Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1439650 | XP_003595077.1 | 94.262 | 244 | 14 | 0 | 1 | 244 | 1 | 244 | 5.51e-169 | 476 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1439650 | sp|Q2HIV9|BH035_ARATH | 62.449 | 245 | 83 | 6 | 1 | 241 | 1 | 240 | 2.03e-94 | 280 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1439650 | G7IG90 | 94.262 | 244 | 14 | 0 | 1 | 244 | 1 | 244 | 2.63e-169 | 476 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1439650 | TF | bHLH |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0043740 | Msa1439650 | 0.822460 | 2.341310e-53 | -8.615850e-47 |
| Msa0051050 | Msa1439650 | 0.839323 | 1.697740e-57 | -8.615850e-47 |
| Msa0090090 | Msa1439650 | 0.829096 | 6.232498e-55 | -8.615850e-47 |
| Msa0101240 | Msa1439650 | 0.827547 | 1.473002e-54 | -8.615850e-47 |
| Msa1360420 | Msa1439650 | 0.833834 | 4.247605e-56 | -8.615850e-47 |
| Msa1400340 | Msa1439650 | 0.812939 | 3.293753e-51 | -8.615850e-47 |
| Msa1409490 | Msa1439650 | 0.809046 | 2.296251e-50 | -8.615850e-47 |
| Msa1416730 | Msa1439650 | 0.807077 | 6.027421e-50 | -8.615850e-47 |
| Msa0614380 | Msa1439650 | 0.844289 | 8.292210e-59 | -8.615850e-47 |
| Msa0697590 | Msa1439650 | 0.822510 | 2.279849e-53 | -8.615850e-47 |
| Msa0718800 | Msa1439650 | 0.804100 | 2.539928e-49 | -8.615850e-47 |
| Msa0734250 | Msa1439650 | 0.806788 | 6.940277e-50 | -8.615850e-47 |
| Msa0827820 | Msa1439650 | 0.806176 | 9.341312e-50 | -8.615850e-47 |
| Msa0137560 | Msa1439650 | 0.817668 | 2.927319e-52 | -8.615850e-47 |
| Msa0151990 | Msa1439650 | 0.805161 | 1.525379e-49 | -8.615850e-47 |
| Msa0189600 | Msa1439650 | 0.820015 | 8.574915e-53 | -8.615850e-47 |
| Msa0204830 | Msa1439650 | 0.885264 | 9.443371e-72 | -8.615850e-47 |
| Msa1250420 | Msa1439650 | 0.816577 | 5.148601e-52 | -8.615850e-47 |
| Msa1266490 | Msa1439650 | 0.807260 | 5.513743e-50 | -8.615850e-47 |
| Msa0408340 | Msa1439650 | 0.815480 | 9.046294e-52 | -8.615850e-47 |
| Msa0427700 | Msa1439650 | 0.818496 | 1.901707e-52 | -8.615850e-47 |
| Msa1029870 | Msa1439650 | 0.815599 | 8.511566e-52 | -8.615850e-47 |
| Msa1043120 | Msa1439650 | 0.813697 | 2.244360e-51 | -8.615850e-47 |
| Msa1074890 | Msa1439650 | 0.813668 | 2.277663e-51 | -8.615850e-47 |
| Msa1084640 | Msa1439650 | 0.812809 | 3.516545e-51 | -8.615850e-47 |
| Msa0244890 | Msa1439650 | 0.968002 | 4.627099e-128 | -8.615850e-47 |
| Msa0244900 | Msa1439650 | 0.876638 | 1.190664e-68 | -8.615850e-47 |
| Msa0254260 | Msa1439650 | 0.837905 | 3.943700e-57 | -8.615850e-47 |
| Msa0271540 | Msa1439650 | 0.848821 | 4.799952e-60 | -8.615850e-47 |
| Msa0283480 | Msa1439650 | 0.838856 | 2.243134e-57 | -8.615850e-47 |
| Msa0283490 | Msa1439650 | 0.964974 | 5.244876e-124 | -8.615850e-47 |
| Msa0290680 | Msa1439650 | 0.806026 | 1.004705e-49 | -8.615850e-47 |
| Msa0300840 | Msa1439650 | 0.817754 | 2.798914e-52 | -8.615850e-47 |
| Msa0319260 | Msa1439650 | 0.833613 | 4.822098e-56 | -8.615850e-47 |
| Msa0319270 | Msa1439650 | 0.822338 | 2.499145e-53 | -8.615850e-47 |
| Msa0331970 | Msa1439650 | 0.916747 | 1.227820e-85 | -8.615850e-47 |
| Msa0332390 | Msa1439650 | 0.814999 | 1.157410e-51 | -8.615850e-47 |
| Msa0338340 | Msa1439650 | 0.821563 | 3.776994e-53 | -8.615850e-47 |
| Msa1115740 | Msa1439650 | 0.808408 | 3.143744e-50 | -8.615850e-47 |
| Msa1189820 | Msa1439650 | 0.810952 | 8.922558e-51 | -8.615850e-47 |
| Msa0567380 | Msa1439650 | 0.828772 | 7.466366e-55 | -8.615850e-47 |
| Msa0568800 | Msa1439650 | 0.816479 | 5.413320e-52 | -8.615850e-47 |
| Msa0599140 | Msa1439650 | 0.810216 | 1.286801e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1439650 | MtrunA17_Chr2g0298751 | 94.262 | 244 | 14 | 0 | 1 | 244 | 1 | 244 | 5.07e-173 | 476 |
| Msa1439650 | MtrunA17_Chr8g0365711 | 32.353 | 170 | 107 | 2 | 51 | 220 | 243 | 404 | 1.13e-23 | 98.6 |
| Msa1439650 | MtrunA17_Chr1g0211081 | 32.911 | 237 | 128 | 7 | 6 | 213 | 258 | 492 | 3.77e-22 | 94.7 |
| Msa1439650 | MtrunA17_Chr2g0320291 | 28.796 | 191 | 113 | 5 | 51 | 236 | 132 | 304 | 5.14e-19 | 84.3 |
| Msa1439650 | MtrunA17_Chr7g0252041 | 32.632 | 190 | 115 | 6 | 49 | 232 | 283 | 465 | 8.94e-18 | 82.0 |
| Msa1439650 | MtrunA17_Chr3g0131691 | 30.481 | 187 | 122 | 5 | 48 | 232 | 294 | 474 | 1.12e-17 | 81.6 |
| Msa1439650 | MtrunA17_Chr4g0028071 | 31.098 | 164 | 96 | 3 | 51 | 211 | 148 | 297 | 7.14e-17 | 78.6 |
| Msa1439650 | MtrunA17_Chr7g0260841 | 30.286 | 175 | 85 | 4 | 53 | 227 | 356 | 493 | 1.39e-14 | 72.8 |
| Msa1439650 | MtrunA17_Chr7g0275821 | 27.219 | 169 | 92 | 4 | 53 | 216 | 253 | 395 | 3.59e-14 | 71.2 |
| Msa1439650 | MtrunA17_Chr4g0049331 | 28.049 | 164 | 101 | 4 | 53 | 214 | 136 | 284 | 8.98e-14 | 69.3 |
| Msa1439650 | MtrunA17_Chr8g0366751 | 29.487 | 156 | 96 | 3 | 53 | 202 | 463 | 610 | 1.79e-13 | 69.3 |
| Msa1439650 | MtrunA17_Chr2g0333611 | 23.944 | 213 | 129 | 5 | 27 | 221 | 3 | 200 | 3.21e-13 | 66.6 |
| Msa1439650 | MtrunA17_Chr5g0411341 | 30.719 | 153 | 98 | 4 | 53 | 202 | 494 | 641 | 3.92e-13 | 68.6 |
| Msa1439650 | MtrunA17_Chr8g0346161 | 50.820 | 61 | 23 | 1 | 53 | 113 | 292 | 345 | 2.95e-12 | 65.9 |
| Msa1439650 | MtrunA17_Chr8g0346151 | 60.000 | 45 | 18 | 0 | 53 | 97 | 280 | 324 | 4.23e-12 | 65.1 |
| Msa1439650 | MtrunA17_Chr5g0400661 | 26.257 | 179 | 109 | 6 | 53 | 219 | 150 | 317 | 4.86e-12 | 64.7 |
| Msa1439650 | MtrunA17_Chr2g0280161 | 28.221 | 163 | 103 | 2 | 53 | 214 | 178 | 327 | 5.15e-12 | 64.7 |
| Msa1439650 | MtrunA17_Chr3g0141091 | 51.282 | 78 | 34 | 2 | 48 | 122 | 169 | 245 | 7.77e-12 | 63.9 |
| Msa1439650 | MtrunA17_Chr1g0185621 | 50.909 | 55 | 27 | 0 | 43 | 97 | 466 | 520 | 1.04e-11 | 64.3 |
| Msa1439650 | MtrunA17_Chr5g0411541 | 35.032 | 157 | 80 | 4 | 48 | 204 | 152 | 286 | 1.53e-11 | 63.2 |
| Msa1439650 | MtrunA17_Chr4g0048851 | 28.743 | 167 | 99 | 3 | 50 | 215 | 45 | 192 | 2.83e-11 | 61.2 |
| Msa1439650 | MtrunA17_Chr2g0333641 | 25.758 | 198 | 117 | 6 | 53 | 242 | 138 | 313 | 4.00e-11 | 62.0 |
| Msa1439650 | MtrunA17_Chr4g0054571 | 45.000 | 60 | 33 | 0 | 53 | 112 | 151 | 210 | 5.56e-11 | 61.6 |
| Msa1439650 | MtrunA17_Chr8g0336681 | 26.012 | 173 | 114 | 4 | 46 | 214 | 150 | 312 | 6.97e-11 | 61.2 |
| Msa1439650 | MtrunA17_Chr5g0400621 | 37.838 | 74 | 43 | 1 | 37 | 107 | 139 | 212 | 7.21e-11 | 61.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1439650 | AT5G57150.1 | 63.525 | 244 | 81 | 6 | 1 | 241 | 1 | 239 | 1.56e-96 | 283 |
| Msa1439650 | AT4G29930.1 | 55.200 | 250 | 98 | 3 | 1 | 238 | 1 | 248 | 4.84e-90 | 266 |
| Msa1439650 | AT4G29930.6 | 55.417 | 240 | 87 | 3 | 1 | 238 | 1 | 222 | 8.75e-88 | 259 |
| Msa1439650 | AT4G29930.2 | 55.000 | 240 | 85 | 3 | 1 | 238 | 1 | 219 | 7.94e-87 | 257 |
| Msa1439650 | AT5G57150.5 | 65.596 | 218 | 67 | 6 | 1 | 215 | 1 | 213 | 1.63e-86 | 256 |
| Msa1439650 | AT5G57150.2 | 63.801 | 221 | 71 | 6 | 1 | 217 | 1 | 216 | 1.47e-85 | 254 |
| Msa1439650 | AT5G57150.3 | 64.384 | 219 | 69 | 6 | 1 | 215 | 1 | 214 | 1.49e-85 | 254 |
| Msa1439650 | AT5G57150.4 | 64.384 | 219 | 69 | 6 | 1 | 215 | 1 | 214 | 6.71e-84 | 251 |
| Msa1439650 | AT4G29930.3 | 54.825 | 228 | 89 | 3 | 1 | 216 | 1 | 226 | 6.79e-80 | 241 |
| Msa1439650 | AT4G29930.7 | 54.825 | 228 | 89 | 3 | 1 | 216 | 1 | 226 | 6.79e-80 | 241 |
| Msa1439650 | AT4G29930.5 | 54.587 | 218 | 76 | 3 | 1 | 216 | 1 | 197 | 1.58e-76 | 231 |
| Msa1439650 | AT4G29930.4 | 54.857 | 175 | 65 | 3 | 1 | 163 | 1 | 173 | 8.28e-55 | 174 |
| Msa1439650 | AT1G12860.1 | 33.690 | 187 | 111 | 6 | 49 | 232 | 264 | 440 | 1.12e-18 | 84.7 |
| Msa1439650 | AT3G26744.1 | 32.447 | 188 | 116 | 5 | 49 | 232 | 304 | 484 | 2.24e-18 | 84.0 |
| Msa1439650 | AT3G26744.4 | 32.447 | 188 | 116 | 5 | 49 | 232 | 304 | 484 | 2.24e-18 | 84.0 |
| Msa1439650 | AT3G26744.2 | 32.447 | 188 | 116 | 5 | 49 | 232 | 304 | 484 | 2.24e-18 | 84.0 |
| Msa1439650 | AT2G28160.2 | 31.013 | 158 | 93 | 4 | 51 | 205 | 130 | 274 | 2.10e-17 | 80.1 |
| Msa1439650 | AT2G28160.1 | 31.013 | 158 | 93 | 4 | 51 | 205 | 130 | 274 | 2.25e-17 | 80.1 |
| Msa1439650 | AT2G16910.1 | 31.183 | 186 | 113 | 5 | 51 | 225 | 313 | 494 | 3.51e-17 | 80.9 |
| Msa1439650 | AT3G26744.6 | 34.568 | 162 | 95 | 5 | 49 | 206 | 304 | 458 | 1.81e-16 | 78.6 |
| Msa1439650 | AT1G01260.1 | 29.518 | 166 | 82 | 3 | 53 | 218 | 434 | 564 | 5.61e-16 | 77.4 |
| Msa1439650 | AT1G01260.2 | 29.518 | 166 | 82 | 3 | 53 | 218 | 434 | 564 | 5.61e-16 | 77.4 |
| Msa1439650 | AT1G01260.3 | 29.518 | 166 | 82 | 3 | 53 | 218 | 434 | 564 | 5.61e-16 | 77.4 |
| Msa1439650 | AT2G46510.1 | 61.818 | 55 | 21 | 0 | 53 | 107 | 396 | 450 | 2.87e-15 | 75.1 |
| Msa1439650 | AT1G12860.2 | 34.783 | 161 | 92 | 6 | 49 | 206 | 264 | 414 | 3.46e-15 | 74.7 |
| Msa1439650 | AT5G46760.1 | 29.032 | 186 | 115 | 7 | 53 | 233 | 416 | 589 | 3.56e-15 | 74.7 |
| Msa1439650 | AT4G17880.1 | 30.625 | 160 | 78 | 4 | 53 | 202 | 417 | 553 | 3.04e-14 | 72.0 |
| Msa1439650 | AT4G16430.1 | 46.053 | 76 | 40 | 1 | 53 | 127 | 321 | 396 | 3.77e-14 | 71.6 |
| Msa1439650 | AT1G32640.1 | 31.333 | 150 | 91 | 4 | 53 | 202 | 453 | 590 | 6.39e-14 | 71.2 |
| Msa1439650 | AT4G37850.2 | 29.444 | 180 | 107 | 6 | 53 | 228 | 153 | 316 | 1.45e-13 | 69.3 |
| Msa1439650 | AT4G37850.1 | 29.444 | 180 | 107 | 6 | 53 | 228 | 153 | 316 | 1.45e-13 | 69.3 |
| Msa1439650 | AT1G63650.3 | 29.213 | 178 | 116 | 4 | 41 | 212 | 397 | 570 | 5.18e-13 | 68.6 |
| Msa1439650 | AT1G63650.1 | 29.213 | 178 | 116 | 4 | 41 | 212 | 397 | 570 | 5.18e-13 | 68.6 |
| Msa1439650 | AT1G63650.2 | 29.213 | 178 | 116 | 4 | 41 | 212 | 397 | 570 | 5.18e-13 | 68.6 |
| Msa1439650 | AT5G46830.1 | 27.473 | 182 | 111 | 3 | 53 | 228 | 344 | 510 | 4.23e-12 | 65.9 |
| Msa1439650 | AT4G21330.1 | 30.357 | 168 | 107 | 4 | 51 | 218 | 31 | 188 | 5.26e-12 | 63.5 |
| Msa1439650 | AT1G10610.1 | 27.513 | 189 | 120 | 4 | 51 | 232 | 263 | 441 | 1.25e-11 | 64.3 |
| Msa1439650 | AT1G10610.2 | 27.513 | 189 | 120 | 4 | 51 | 232 | 233 | 411 | 1.62e-11 | 63.9 |
| Msa1439650 | AT1G10610.3 | 26.064 | 188 | 124 | 3 | 51 | 232 | 166 | 344 | 1.66e-11 | 63.5 |
| Msa1439650 | AT2G22770.1 | 23.834 | 193 | 117 | 3 | 33 | 209 | 113 | 291 | 5.29e-11 | 62.0 |
| Msa1439650 | AT4G00870.1 | 43.333 | 60 | 34 | 0 | 53 | 112 | 250 | 309 | 8.89e-11 | 61.6 |
Find 63 sgRNAs with CRISPR-Local
Find 439 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTAAGGTGGTTGGTTTATT+TGG | 0.143628 | tig0028827:-38203 | None:intergenic |
| TCTTGATCAAAATCATAATT+TGG | 0.197391 | tig0028827:-39529 | None:intergenic |
| CTGATCTGTTCTCTTCTTCT+TGG | 0.200519 | tig0028827:-39572 | None:intergenic |
| TGATGATTGAAAGAAATTTA+AGG | 0.231892 | tig0028827:-38219 | None:intergenic |
| GGATAAAGCTTCAATTATTA+AGG | 0.255192 | tig0028827:+39411 | Msa1439650:CDS |
| TAATTTGGATTAATATTATT+AGG | 0.270353 | tig0028827:-39514 | None:intergenic |
| ACCTATCAAGCTCTTGGGTT+TGG | 0.289916 | tig0028827:-38345 | None:intergenic |
| GTGATGAGTACAAGCTTTAC+TGG | 0.315934 | tig0028827:+38305 | Msa1439650:CDS |
| CCTGATGATGCTGCACCATC+TGG | 0.327488 | tig0028827:-38520 | None:intergenic |
| GAGATAATGGAACTTGAATC+TGG | 0.329852 | tig0028827:+39487 | Msa1439650:CDS |
| TGTTTACCTTGCTAATGTTT+GGG | 0.357210 | tig0028827:-38624 | None:intergenic |
| GATTATTCAAGCTGAGATAA+TGG | 0.358095 | tig0028827:+39474 | Msa1439650:CDS |
| TCCCTTCATTAGATGCTCAT+AGG | 0.368457 | tig0028827:-46382 | None:intergenic |
| TTTACCTCAAGGACTTCAAT+TGG | 0.374167 | tig0028827:-39625 | None:intergenic |
| ATTGTTACCTATCAAGCTCT+TGG | 0.383647 | tig0028827:-38351 | None:intergenic |
| ATGTTTACCTTGCTAATGTT+TGG | 0.403010 | tig0028827:-38625 | None:intergenic |
| TAGATGCTCATAGGGCTTAG+AGG | 0.411365 | tig0028827:-46373 | None:intergenic |
| TTGTGGTTGCAGCTGGGGAT+TGG | 0.412240 | tig0028827:+38462 | Msa1439650:intron |
| TTGTTACCTATCAAGCTCTT+GGG | 0.420680 | tig0028827:-38350 | None:intergenic |
| TTGCAGCTGGGGATTGGATG+AGG | 0.423798 | tig0028827:+38468 | Msa1439650:intron |
| TCCAAACCCAAGAGCTTGAT+AGG | 0.430262 | tig0028827:+38344 | Msa1439650:CDS |
| TGAAAGAAATTTAAGGTGGT+TGG | 0.431422 | tig0028827:-38212 | None:intergenic |
| GTTGTTAAAGTTGAAATTGA+AGG | 0.431964 | tig0028827:-38268 | None:intergenic |
| CCCTTCATTAGATGCTCATA+GGG | 0.440042 | tig0028827:-46381 | None:intergenic |
| TATCAAGCTCTTGGGTTTGG+AGG | 0.453409 | tig0028827:-38342 | None:intergenic |
| ACATTGTCTCTGAAAGGAAT+AGG | 0.453984 | tig0028827:+38557 | Msa1439650:CDS |
| GCCCTATGAGCATCTAATGA+AGG | 0.457378 | tig0028827:+46380 | Msa1439650:exon |
| CCAGATGGTGCAGCATCATC+AGG | 0.460325 | tig0028827:+38520 | Msa1439650:CDS |
| TGAGCTTGACATGTAACAAA+AGG | 0.468788 | tig0028827:+40968 | Msa1439650:CDS |
| CTGATGATGCTGCACCATCT+GGG | 0.496200 | tig0028827:-38519 | None:intergenic |
| AGCCACTAGTATATAAGTAT+AGG | 0.503320 | tig0028827:+46612 | Msa1439650:three_prime_UTR |
| GCAGCTTAGGGTTACATACA+TGG | 0.504078 | tig0028827:+40927 | Msa1439650:intron |
| AAGAGCTTCCTGTGTTGCTA+AGG | 0.527358 | tig0028827:+39548 | Msa1439650:CDS |
| TTGGGTTTGGAGGAACATGT+TGG | 0.533281 | tig0028827:-38332 | None:intergenic |
| CCCTATGAGCATCTAATGAA+GGG | 0.535852 | tig0028827:+46381 | Msa1439650:exon |
| AATTTCAACTTTAACAACCA+TGG | 0.540733 | tig0028827:+38273 | Msa1439650:exon |
| AGTATATAAGTATAGGATTG+AGG | 0.543177 | tig0028827:+46619 | Msa1439650:three_prime_UTR |
| CTAAGAACATTGTCTCTGAA+AGG | 0.544041 | tig0028827:+38551 | Msa1439650:CDS |
| GAGCTTGACATGTAACAAAA+GGG | 0.547151 | tig0028827:+40969 | Msa1439650:CDS |
| CTTTCCAATTGAAGTCCTTG+AGG | 0.548914 | tig0028827:+39621 | Msa1439650:CDS |
| ATTCCATCACTATATATACT+AGG | 0.557096 | tig0028827:+38166 | Msa1439650:five_prime_UTR |
| TAATAATTTGAAAATTGAGT+AGG | 0.560330 | tig0028827:-46693 | None:intergenic |
| TGATGATGCTGCACCATCTG+GGG | 0.561453 | tig0028827:-38518 | None:intergenic |
| TTCTTGGACCTTAGCAACAC+AGG | 0.566724 | tig0028827:-39556 | None:intergenic |
| AGGGTCATTAAGAGCTGCAA+TGG | 0.567337 | tig0028827:-46353 | None:intergenic |
| CTCATCACCAATGTTCTCCA+TGG | 0.572679 | tig0028827:-38290 | None:intergenic |
| ATCCTATACTTATATACTAG+TGG | 0.576611 | tig0028827:-46614 | None:intergenic |
| AGATGCTCATAGGGCTTAGA+GGG | 0.580755 | tig0028827:-46372 | None:intergenic |
| TTGCCTAGTATATATAGTGA+TGG | 0.583665 | tig0028827:-38169 | None:intergenic |
| TGATGAGTACAAGCTTTACT+GGG | 0.584970 | tig0028827:+38306 | Msa1439650:CDS |
| TTTGAAGACAGTCTTCATTG+AGG | 0.586246 | tig0028827:+41080 | Msa1439650:CDS |
| TTAACAACCATGGAGAACAT+TGG | 0.592898 | tig0028827:+38283 | Msa1439650:exon |
| TTGTCTCTGAAAGGAATAGG+AGG | 0.600641 | tig0028827:+38560 | Msa1439650:CDS |
| AGATAATGGAACTTGAATCT+GGG | 0.607917 | tig0028827:+39488 | Msa1439650:CDS |
| TAACAAAAGGGCAGACACAA+TGG | 0.621554 | tig0028827:+40981 | Msa1439650:CDS |
| ACTCTTTGCACTTAGAGCAG+TGG | 0.626022 | tig0028827:+38600 | Msa1439650:CDS |
| TATGATTCAAGCTCCCCAGA+TGG | 0.634637 | tig0028827:+38505 | Msa1439650:CDS |
| CAGCTTAGGGTTACATACAT+GGG | 0.636587 | tig0028827:+40928 | Msa1439650:intron |
| CTATGAAAATACGAAAGCCA+CGG | 0.657789 | tig0028827:-46644 | None:intergenic |
| AGTGGTCCCAAACATTAGCA+AGG | 0.661525 | tig0028827:+38618 | Msa1439650:CDS |
| TGATTGAAAGAAATTTAAGG+TGG | 0.679867 | tig0028827:-38216 | None:intergenic |
| AGTATAGGATTGAGGAACCG+TGG | 0.680536 | tig0028827:+46627 | Msa1439650:three_prime_UTR |
| ATACATGGGAGAGAATACAA+TGG | 0.777577 | tig0028827:+40942 | Msa1439650:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTTTTTTTTTTTTTTT+GGG | - | tig0028827:44275-44294 | None:intergenic | 0.0% |
| !!! | TTTTTTTTTTTTTTTTTTTT+TGG | - | tig0028827:44275-44294 | None:intergenic | 0.0% |
| !!! | TTATTTTAATTTTTAATATT+CGG | + | tig0028827:45007-45026 | Msa1439650:intron | 0.0% |
| !! | TACTAAATATATGTTATAAA+TGG | - | tig0028827:39095-39114 | None:intergenic | 10.0% |
| !! | TAATTTGGATTAATATTATT+AGG | - | tig0028827:39517-39536 | None:intergenic | 10.0% |
| !! | TGTATATAATATTAATTGAA+GGG | + | tig0028827:39992-40011 | Msa1439650:intron | 10.0% |
| !! | AATCAAATCAATATTTATAT+TGG | - | tig0028827:40410-40429 | None:intergenic | 10.0% |
| !!! | TTTTATTTTAATTTTTTGAC+AGG | - | tig0028827:40484-40503 | None:intergenic | 10.0% |
| !! | TATAATCTATATTTATTGTT+GGG | - | tig0028827:40764-40783 | None:intergenic | 10.0% |
| !!! | TTTTTGTTTTATATTATTTG+AGG | - | tig0028827:41246-41265 | None:intergenic | 10.0% |
| !! | TCAATGTAAATTATATTTAA+AGG | + | tig0028827:41314-41333 | Msa1439650:intron | 10.0% |
| !!! | ACAATTTTTTAAATATTGTT+TGG | - | tig0028827:41409-41428 | None:intergenic | 10.0% |
| !! | TTATTAAATTATTGTTTACT+TGG | - | tig0028827:42666-42685 | None:intergenic | 10.0% |
| !! | TTTCTTATATTAAGATTAAA+TGG | - | tig0028827:44087-44106 | None:intergenic | 10.0% |
| !!! | TTTTATTTAACTAAAAAGTA+CGG | - | tig0028827:45936-45955 | None:intergenic | 10.0% |
| !!! | CATTTTTTTAATTCAAAATT+AGG | + | tig0028827:46173-46192 | Msa1439650:intron | 10.0% |
| !!! | AATTAATTTACTTTTGTACT+TGG | - | tig0028827:38784-38803 | None:intergenic | 15.0% |
| !! | AGTACAAAAGTAAATTAATT+TGG | + | tig0028827:38784-38803 | Msa1439650:intron | 15.0% |
| !! | AAACAATACATGTATATATA+CGG | - | tig0028827:38822-38841 | None:intergenic | 15.0% |
| !!! | TTTTTTAAACATTTTGTTAG+AGG | + | tig0028827:38905-38924 | Msa1439650:intron | 15.0% |
| !! | AATAGTTGATTAGAATAATT+CGG | - | tig0028827:39930-39949 | None:intergenic | 15.0% |
| !! | GTGTATATAATATTAATTGA+AGG | + | tig0028827:39991-40010 | Msa1439650:intron | 15.0% |
| !! | ATAATCTATATTTATTGTTG+GGG | - | tig0028827:40763-40782 | None:intergenic | 15.0% |
| !! | CTATAATCTATATTTATTGT+TGG | - | tig0028827:40765-40784 | None:intergenic | 15.0% |
| !! | AATAAAGAAAGTGAAATTAA+AGG | - | tig0028827:41117-41136 | None:intergenic | 15.0% |
| !! | TAACTAATTGAATTATGTTT+CGG | - | tig0028827:41460-41479 | None:intergenic | 15.0% |
| !!! | GATTTTTTTAAGTAATTTAG+TGG | - | tig0028827:41619-41638 | None:intergenic | 15.0% |
| !!! | TGAACACTTTTAAATAAAAA+AGG | + | tig0028827:41849-41868 | Msa1439650:intron | 15.0% |
| !! | TTAAATGAAAGAGTTAAAAA+AGG | + | tig0028827:41940-41959 | Msa1439650:intron | 15.0% |
| !! | TAAATGAAAGAGTTAAAAAA+GGG | + | tig0028827:41941-41960 | Msa1439650:intron | 15.0% |
| !! | AATATAAGAATAATTGACAA+AGG | + | tig0028827:42493-42512 | Msa1439650:intron | 15.0% |
| !! | ATATAAGAATAATTGACAAA+GGG | + | tig0028827:42494-42513 | Msa1439650:intron | 15.0% |
| !!! | GTTACCTTATTTATTTATTT+CGG | + | tig0028827:42984-43003 | Msa1439650:intron | 15.0% |
| !!! | ATATCTTTTTAATAGTTGAT+CGG | - | tig0028827:43326-43345 | None:intergenic | 15.0% |
| !! | ATCAACTATTAAAAAGATAT+GGG | + | tig0028827:43326-43345 | Msa1439650:intron | 15.0% |
| !!! | TAAAAAAAAGTTACTTGTTT+TGG | + | tig0028827:43769-43788 | Msa1439650:intron | 15.0% |
| !!! | TAAGAAACAATTTTTTTATG+TGG | + | tig0028827:44100-44119 | Msa1439650:intron | 15.0% |
| !!! | TTTTTTTTTTTTTTGGGATA+AGG | - | tig0028827:44269-44288 | None:intergenic | 15.0% |
| !! | ACTATAAAAATTTAACTCAT+GGG | - | tig0028827:44539-44558 | None:intergenic | 15.0% |
| !! | TACTATAAAAATTTAACTCA+TGG | - | tig0028827:44540-44559 | None:intergenic | 15.0% |
| !! | AAAAAAATTATATATGGACA+AGG | - | tig0028827:44679-44698 | None:intergenic | 15.0% |
| !! | AAACGGAAAAAAATTATATA+TGG | - | tig0028827:44685-44704 | None:intergenic | 15.0% |
| !! | ATATAAAATAGATGAGAAAA+CGG | - | tig0028827:44702-44721 | None:intergenic | 15.0% |
| !!! | ATAAGTCTTTAATTTAATGT+TGG | - | tig0028827:44789-44808 | None:intergenic | 15.0% |
| !! | AAAATCTCTATTAATTGATT+TGG | - | tig0028827:44817-44836 | None:intergenic | 15.0% |
| !! | AATTCAATATAAAATCATGT+TGG | + | tig0028827:44847-44866 | Msa1439650:intron | 15.0% |
| !!! | AACTAATAAATACTTTTTCA+GGG | - | tig0028827:45094-45113 | None:intergenic | 15.0% |
| !! | AACATGCATTATTATATATA+GGG | + | tig0028827:45349-45368 | Msa1439650:intron | 15.0% |
| !! | CTCATTTAAATAGTAAAATA+TGG | - | tig0028827:45459-45478 | None:intergenic | 15.0% |
| !!! | TTATTTTTAAAATGTTGTGT+TGG | - | tig0028827:45551-45570 | None:intergenic | 15.0% |
| !! | ATAAGTATTATAACTTATCA+TGG | + | tig0028827:45989-46008 | Msa1439650:intron | 15.0% |
| !!! | TAATGAGGTATTATTTTTTA+GGG | - | tig0028827:46058-46077 | None:intergenic | 15.0% |
| !!! | ATAATGAGGTATTATTTTTT+AGG | - | tig0028827:46059-46078 | None:intergenic | 15.0% |
| !! | AGAAAATAAAATAAAATGAG+AGG | + | tig0028827:46230-46249 | Msa1439650:intron | 15.0% |
| !! | TAATAATTTGAAAATTGAGT+AGG | - | tig0028827:46696-46715 | None:intergenic | 15.0% |
| !!! | ACTCAATTTTCAAATTATTA+AGG | + | tig0028827:46696-46715 | Msa1439650:three_prime_UTR | 15.0% |
| !! | TGATGATTGAAAGAAATTTA+AGG | - | tig0028827:38222-38241 | None:intergenic | 20.0% |
| !!! | ATCTTGATAATTGAGATATA+TGG | + | tig0028827:38439-38458 | Msa1439650:intron | 20.0% |
| !!! | TTTGTTTTGTTTGAATTAAG+TGG | + | tig0028827:38728-38747 | Msa1439650:intron | 20.0% |
| !! | ATAATTACTATACCATATGA+TGG | - | tig0028827:39323-39342 | None:intergenic | 20.0% |
| !! | CATATGGTATAGTAATTATT+TGG | + | tig0028827:39324-39343 | Msa1439650:intron | 20.0% |
| !! | TCTTGATCAAAATCATAATT+TGG | - | tig0028827:39532-39551 | None:intergenic | 20.0% |
| !! | AGAAAAAGTTATTATTGCAT+TGG | + | tig0028827:40026-40045 | Msa1439650:intron | 20.0% |
| !!! | CACTTTTAAGTATAAGAATT+AGG | - | tig0028827:40135-40154 | None:intergenic | 20.0% |
| !! | ACAAAAATAAGACATTGTAT+AGG | + | tig0028827:40365-40384 | Msa1439650:intron | 20.0% |
| !! | CAAAAATAAGACATTGTATA+GGG | + | tig0028827:40366-40385 | Msa1439650:intron | 20.0% |
| !!! | TGTCTATTTTATTAGAGAAA+TGG | - | tig0028827:40537-40556 | None:intergenic | 20.0% |
| !! | TCAGATAAAAAAAATAGTAG+TGG | + | tig0028827:40558-40577 | Msa1439650:intron | 20.0% |
| !! | CAGATAAAAAAAATAGTAGT+GGG | + | tig0028827:40559-40578 | Msa1439650:intron | 20.0% |
| !!! | CTAATATATTTTCTCTACTA+GGG | - | tig0028827:40659-40678 | None:intergenic | 20.0% |
| !! | GAACATGAACATAAAAAATT+AGG | - | tig0028827:40682-40701 | None:intergenic | 20.0% |
| !! | TAATCTATATTTATTGTTGG+GGG | - | tig0028827:40762-40781 | None:intergenic | 20.0% |
| !! | TGATGCTAAAAAAATAAATG+TGG | + | tig0028827:40821-40840 | Msa1439650:intron | 20.0% |
| !! | GATGCTAAAAAAATAAATGT+GGG | + | tig0028827:40822-40841 | Msa1439650:intron | 20.0% |
| !! | ATGCTAAAAAAATAAATGTG+GGG | + | tig0028827:40823-40842 | Msa1439650:intron | 20.0% |
| !!! | TCCTATTTAATTTGCTTTAT+AGG | + | tig0028827:41190-41209 | Msa1439650:intron | 20.0% |
| !! | ACCTATAAAGCAAATTAAAT+AGG | - | tig0028827:41194-41213 | None:intergenic | 20.0% |
| !!! | ACATTTTAAGATGAATAAGT+GGG | - | tig0028827:41362-41381 | None:intergenic | 20.0% |
| !! | AACTAATTGAATTATGTTTC+GGG | - | tig0028827:41459-41478 | None:intergenic | 20.0% |
| !! | AAATATTGTTAGCTATTCAT+CGG | + | tig0028827:41646-41665 | Msa1439650:intron | 20.0% |
| !! | AAATAAAAAAGGCAATAATG+AGG | + | tig0028827:41860-41879 | Msa1439650:intron | 20.0% |
| !! | AATAAAAAAGGCAATAATGA+GGG | + | tig0028827:41861-41880 | Msa1439650:intron | 20.0% |
| !! | AAATGAAAGAGTTAAAAAAG+GGG | + | tig0028827:41942-41961 | Msa1439650:intron | 20.0% |
| !! | AAGCACAATATTTAGAAAAT+TGG | - | tig0028827:42268-42287 | None:intergenic | 20.0% |
| !!! | TATAGAATTTTAACTCTTCA+TGG | + | tig0028827:42326-42345 | Msa1439650:intron | 20.0% |
| !! | ACTAATTAGTGCTATATATT+TGG | - | tig0028827:42463-42482 | None:intergenic | 20.0% |
| !! | TATGCCGAAATAAATAAATA+AGG | - | tig0028827:42991-43010 | None:intergenic | 20.0% |
| !! | AAAAAAAAAATTAAACCACG+CGG | - | tig0028827:43028-43047 | None:intergenic | 20.0% |
| !! | GATCAACTATTAAAAAGATA+TGG | + | tig0028827:43325-43344 | Msa1439650:intron | 20.0% |
| !! | AGACTCATTTATAAATACTT+CGG | - | tig0028827:43641-43660 | None:intergenic | 20.0% |
| !! | TCAGTAACTCTATATATTTA+TGG | + | tig0028827:44205-44224 | Msa1439650:intron | 20.0% |
| !! | CAGTAACTCTATATATTTAT+GGG | + | tig0028827:44206-44225 | Msa1439650:intron | 20.0% |
| !!! | ATATTTTAAATTGTTCCTCA+TGG | - | tig0028827:44239-44258 | None:intergenic | 20.0% |
| !!! | TTATTTCACACTCTAAAAAT+AGG | - | tig0028827:44343-44362 | None:intergenic | 20.0% |
| !! | TACAGTATAATATTATCACA+TGG | - | tig0028827:44730-44749 | None:intergenic | 20.0% |
| !!! | TACTTATTTCCTATTTTGTT+TGG | - | tig0028827:44756-44775 | None:intergenic | 20.0% |
| !! | AGAAACAAAAAATATGAATG+TGG | - | tig0028827:44939-44958 | None:intergenic | 20.0% |
| !!! | CAACTAATAAATACTTTTTC+AGG | - | tig0028827:45095-45114 | None:intergenic | 20.0% |
| !!! | AAATTAACCTTATTTAGTGT+TGG | + | tig0028827:45194-45213 | Msa1439650:intron | 20.0% |
| !! | GAACATGCATTATTATATAT+AGG | + | tig0028827:45348-45367 | Msa1439650:intron | 20.0% |
| !! | CTCAATTGAAAAGAATAAAA+AGG | - | tig0028827:45634-45653 | None:intergenic | 20.0% |
| !!! | CTTTTTATTCTTTTCAATTG+AGG | + | tig0028827:45632-45651 | Msa1439650:intron | 20.0% |
| !! | AGAAATTTACTTATTACTAG+TGG | + | tig0028827:45724-45743 | Msa1439650:intron | 20.0% |
| !! | ATTATAACTTATCATGGATA+TGG | + | tig0028827:45995-46014 | Msa1439650:intron | 20.0% |
| !!! | AATGAGGTATTATTTTTTAG+GGG | - | tig0028827:46057-46076 | None:intergenic | 20.0% |
| !! | TATTACAATGACAAATAATG+AGG | - | tig0028827:46073-46092 | None:intergenic | 20.0% |
| !!! | TTTTAATTCAAAATTAGGGA+AGG | + | tig0028827:46178-46197 | Msa1439650:intron | 20.0% |
| !! | TTTAATTCAAAATTAGGGAA+GGG | + | tig0028827:46179-46198 | Msa1439650:intron | 20.0% |
| !!! | GTTTTATCCTTTTTATTTTC+AGG | + | tig0028827:46285-46304 | Msa1439650:intron | 20.0% |
| ! | ATTCCATCACTATATATACT+AGG | + | tig0028827:38166-38185 | Msa1439650:five_prime_UTR | 25.0% |
| ! | TGATTGAAAGAAATTTAAGG+TGG | - | tig0028827:38219-38238 | None:intergenic | 25.0% |
| ! | GTTGTTAAAGTTGAAATTGA+AGG | - | tig0028827:38271-38290 | None:intergenic | 25.0% |
| ! | AATTTCAACTTTAACAACCA+TGG | + | tig0028827:38273-38292 | Msa1439650:exon | 25.0% |
| ! | ATAATTGAGATATATGGTTG+TGG | + | tig0028827:38445-38464 | Msa1439650:intron | 25.0% |
| !! | GTAAACATCACTAATTTTAG+CGG | + | tig0028827:38640-38659 | Msa1439650:intron | 25.0% |
| ! | AATTAGTACTACTCAATTTC+TGG | + | tig0028827:38683-38702 | Msa1439650:intron | 25.0% |
| ! | ATTAGTACTACTCAATTTCT+GGG | + | tig0028827:38684-38703 | Msa1439650:intron | 25.0% |
| ! | TTTGTTTGAATTAAGTGGTT+TGG | + | tig0028827:38733-38752 | Msa1439650:intron | 25.0% |
| ! | TTGTTTGAATTAAGTGGTTT+GGG | + | tig0028827:38734-38753 | Msa1439650:intron | 25.0% |
| !!! | TGTATTTTAGGATTTAAGTC+GGG | - | tig0028827:38946-38965 | None:intergenic | 25.0% |
| !!! | CTGTATTTTAGGATTTAAGT+CGG | - | tig0028827:38947-38966 | None:intergenic | 25.0% |
| !! | CGATAGATTTTGTCTATTTT+GGG | - | tig0028827:39018-39037 | None:intergenic | 25.0% |
| !! | TCGATAGATTTTGTCTATTT+TGG | - | tig0028827:39019-39038 | None:intergenic | 25.0% |
| ! | AATTTCTTTCTAATGATGAG+TGG | + | tig0028827:39367-39386 | Msa1439650:intron | 25.0% |
| ! | GGATAAAGCTTCAATTATTA+AGG | + | tig0028827:39411-39430 | Msa1439650:CDS | 25.0% |
| !!! | AAACAACGTTCATTTTGAAA+CGG | - | tig0028827:39848-39867 | None:intergenic | 25.0% |
| ! | TTCAAAATGAACGTTGTTTA+AGG | + | tig0028827:39849-39868 | Msa1439650:intron | 25.0% |
| ! | TTAAGGTGGTGATTTATAAT+TGG | - | tig0028827:40606-40625 | None:intergenic | 25.0% |
| ! | TATAAATCACCACCTTAATA+AGG | + | tig0028827:40608-40627 | Msa1439650:intron | 25.0% |
| ! | ATAAATCACCACCTTAATAA+GGG | + | tig0028827:40609-40628 | Msa1439650:intron | 25.0% |
| !! | GCTAATATATTTTCTCTACT+AGG | - | tig0028827:40660-40679 | None:intergenic | 25.0% |
| ! | GGTCATTAACAAAAAAATAG+TGG | - | tig0028827:40737-40756 | None:intergenic | 25.0% |
| ! | AGATTATAGAAGAGATTGTA+AGG | + | tig0028827:40776-40795 | Msa1439650:intron | 25.0% |
| ! | TGAGTGTGTAATTTGATATA+TGG | + | tig0028827:40898-40917 | Msa1439650:intron | 25.0% |
| ! | TGTTAACTTAGCTATGTTTA+CGG | - | tig0028827:41291-41310 | None:intergenic | 25.0% |
| !!! | CATTTTAAGATGAATAAGTG+GGG | - | tig0028827:41361-41380 | None:intergenic | 25.0% |
| !!! | CACATTTTAAGATGAATAAG+TGG | - | tig0028827:41363-41382 | None:intergenic | 25.0% |
| !!! | GTTAAAATTCACTTTTTTCG+AGG | - | tig0028827:41597-41616 | None:intergenic | 25.0% |
| ! | AAGATATTACAGCTAGAATA+AGG | + | tig0028827:41746-41765 | Msa1439650:intron | 25.0% |
| ! | AGATATTACAGCTAGAATAA+GGG | + | tig0028827:41747-41766 | Msa1439650:intron | 25.0% |
| ! | AAGTGTTCATTGTTCAATTA+TGG | - | tig0028827:41838-41857 | None:intergenic | 25.0% |
| ! | TTAAAAAAGGGGAGAAATAA+GGG | + | tig0028827:41953-41972 | Msa1439650:intron | 25.0% |
| ! | TAGTTGTTAACATTTGATGA+AGG | - | tig0028827:42000-42019 | None:intergenic | 25.0% |
| !!! | TTCTAAAACGACACTTAAAA+AGG | - | tig0028827:42034-42053 | None:intergenic | 25.0% |
| !! | GATTAAAATGAGGGTATAAT+AGG | - | tig0028827:42100-42119 | None:intergenic | 25.0% |
| ! | AAAAAATAGGAAATTATCCG+TGG | - | tig0028827:42122-42141 | None:intergenic | 25.0% |
| ! | TAAAGTGTGTGCAAAAAAAT+AGG | - | tig0028827:42135-42154 | None:intergenic | 25.0% |
| ! | ACAAAAAAATCCGAATTTGT+TGG | - | tig0028827:42213-42232 | None:intergenic | 25.0% |
| ! | TAAATATTGTGCTTATCTCT+TGG | + | tig0028827:42274-42293 | Msa1439650:intron | 25.0% |
| ! | TATTGTTTACTTGGTATTTC+AGG | - | tig0028827:42657-42676 | None:intergenic | 25.0% |
| !! | GAAACACGTTTTCAAATTAT+TGG | - | tig0028827:42954-42973 | None:intergenic | 25.0% |
| !! | TTTTCTTCTTCGTCTAATAA+TGG | + | tig0028827:43064-43083 | Msa1439650:intron | 25.0% |
| !! | CATGCTATAATTTGCAAAAT+GGG | + | tig0028827:43115-43134 | Msa1439650:intron | 25.0% |
| !!! | AGTTTAAGTTAGTAGTGTTT+TGG | + | tig0028827:43236-43255 | Msa1439650:intron | 25.0% |
| !!! | GTTTAAGTTAGTAGTGTTTT+GGG | + | tig0028827:43237-43256 | Msa1439650:intron | 25.0% |
| !!! | TTTAAGTTAGTAGTGTTTTG+GGG | + | tig0028827:43238-43257 | Msa1439650:intron | 25.0% |
| !! | CAAAGAAAAACTTCTACTTT+TGG | + | tig0028827:43466-43485 | Msa1439650:intron | 25.0% |
| !! | TGTCAAGATGAATATCTTTT+GGG | - | tig0028827:43530-43549 | None:intergenic | 25.0% |
| ! | CATTTGATAAAAAAAGCTGA+AGG | - | tig0028827:43879-43898 | None:intergenic | 25.0% |
| ! | AGAATAATCAATTTCAATGG+TGG | - | tig0028827:44015-44034 | None:intergenic | 25.0% |
| ! | ACCATTGAAATTGATTATTC+TGG | + | tig0028827:44014-44033 | Msa1439650:intron | 25.0% |
| ! | ACCAGAATAATCAATTTCAA+TGG | - | tig0028827:44018-44037 | None:intergenic | 25.0% |
| ! | ACTGTATTTCCAAACAAAAT+AGG | + | tig0028827:44744-44763 | Msa1439650:intron | 25.0% |
| !! | TGTCCAATTTTATATTTCTC+AGG | + | tig0028827:44961-44980 | Msa1439650:intron | 25.0% |
| ! | TGCATTATTATATATAGGGT+TGG | + | tig0028827:45353-45372 | Msa1439650:intron | 25.0% |
| ! | GCATTATTATATATAGGGTT+GGG | + | tig0028827:45354-45373 | Msa1439650:intron | 25.0% |
| ! | CATTATTATATATAGGGTTG+GGG | + | tig0028827:45355-45374 | Msa1439650:intron | 25.0% |
| !!! | TTTTTCAAGGTGAATAACTA+GGG | - | tig0028827:45396-45415 | None:intergenic | 25.0% |
| !!! | TTTTTTTGTCAAGTAGTCTA+GGG | - | tig0028827:45431-45450 | None:intergenic | 25.0% |
| !!! | TTTTTTTTGTCAAGTAGTCT+AGG | - | tig0028827:45432-45451 | None:intergenic | 25.0% |
| !! | TTTACTAAACCTTCTCTTTT+GGG | - | tig0028827:45589-45608 | None:intergenic | 25.0% |
| !! | TTTTACTAAACCTTCTCTTT+TGG | - | tig0028827:45590-45609 | None:intergenic | 25.0% |
| !! | TATTTGATTCAAGGATTTTG+AGG | + | tig0028827:45659-45678 | Msa1439650:intron | 25.0% |
| ! | TTATGACAAATCATTACTGA+AGG | + | tig0028827:45878-45897 | Msa1439650:intron | 25.0% |
| ! | TTAATTCAAAATTAGGGAAG+GGG | + | tig0028827:46180-46199 | Msa1439650:intron | 25.0% |
| ! | TCATTTGCCTGAAAATAAAA+AGG | - | tig0028827:46295-46314 | None:intergenic | 25.0% |
| !!! | TTTTTATTTTCAGGCAAATG+AGG | + | tig0028827:46294-46313 | Msa1439650:intron | 25.0% |
| !! | ACGGAATGAACAATTTTAAA+AGG | - | tig0028827:46422-46441 | None:intergenic | 25.0% |
| ! | CTATAAATAAGCACTTCATT+AGG | - | tig0028827:46580-46599 | None:intergenic | 25.0% |
| ! | ATCCTATACTTATATACTAG+TGG | - | tig0028827:46617-46636 | None:intergenic | 25.0% |
| ! | AGTATATAAGTATAGGATTG+AGG | + | tig0028827:46619-46638 | Msa1439650:three_prime_UTR | 25.0% |
| TTGCCTAGTATATATAGTGA+TGG | - | tig0028827:38172-38191 | None:intergenic | 30.0% | |
| !! | TTTAAGGTGGTTGGTTTATT+TGG | - | tig0028827:38206-38225 | None:intergenic | 30.0% |
| ! | TGAAAGAAATTTAAGGTGGT+TGG | - | tig0028827:38215-38234 | None:intergenic | 30.0% |
| TCACTTTGATTCAAGTATGA+AGG | + | tig0028827:38384-38403 | Msa1439650:intron | 30.0% | |
| TGTTTACCTTGCTAATGTTT+GGG | - | tig0028827:38627-38646 | None:intergenic | 30.0% | |
| ATGTTTACCTTGCTAATGTT+TGG | - | tig0028827:38628-38647 | None:intergenic | 30.0% | |
| CGACTTAAATCCTAAAATAC+AGG | + | tig0028827:38945-38964 | Msa1439650:intron | 30.0% | |
| TAGGAAATTGTCAAAATCGA+TGG | - | tig0028827:39138-39157 | None:intergenic | 30.0% | |
| ! | GACTTTTGTAGAATCGATAT+AGG | - | tig0028827:39157-39176 | None:intergenic | 30.0% |
| ! | AAATCGAAGGATTTTACTCA+AGG | - | tig0028827:39179-39198 | None:intergenic | 30.0% |
| AAAATCGCAATCAAAATCGA+AGG | - | tig0028827:39035-39054 | None:intergenic | 30.0% | |
| TTGATGTCTTTGACATCTAA+TGG | + | tig0028827:39287-39306 | Msa1439650:intron | 30.0% | |
| GGAAAATATCAACCATCATA+TGG | + | tig0028827:39308-39327 | Msa1439650:intron | 30.0% | |
| !!! | TAGTGACTTTTTTTTCCAGA+TGG | + | tig0028827:39390-39409 | Msa1439650:intron | 30.0% |
| ! | TAATTGAAGCTTTATCCATC+TGG | - | tig0028827:39408-39427 | None:intergenic | 30.0% |
| GATTATTCAAGCTGAGATAA+TGG | + | tig0028827:39474-39493 | Msa1439650:CDS | 30.0% | |
| !! | AGATAATGGAACTTGAATCT+GGG | + | tig0028827:39488-39507 | Msa1439650:CDS | 30.0% |
| !!! | GACACTCATTTTAAAACAGA+GGG | + | tig0028827:40096-40115 | Msa1439650:intron | 30.0% |
| AACAATGAAGTGTGAATCTA+AGG | - | tig0028827:40172-40191 | None:intergenic | 30.0% | |
| !! | TTCTGAAGTTTGATGATAAG+AGG | - | tig0028827:40304-40323 | None:intergenic | 30.0% |
| ! | TTTATAATTGGTTCTCAGCA+TGG | - | tig0028827:40594-40613 | None:intergenic | 30.0% |
| !! | AGTCTGATTTGGTATTTGAT+AGG | - | tig0028827:40711-40730 | None:intergenic | 30.0% |
| !! | AATAGTGGATAAGTCTGATT+TGG | - | tig0028827:40722-40741 | None:intergenic | 30.0% |
| ! | GGAAGAAGAAAATGAACTTT+TGG | - | tig0028827:41225-41244 | None:intergenic | 30.0% |
| GTTAACTTAGCTATGTTTAC+GGG | - | tig0028827:41290-41309 | None:intergenic | 30.0% | |
| AGACATGCATTGTTATATGT+AGG | + | tig0028827:41535-41554 | Msa1439650:intron | 30.0% | |
| GACATGCATTGTTATATGTA+GGG | + | tig0028827:41536-41555 | Msa1439650:intron | 30.0% | |
| ACATGCATTGTTATATGTAG+GGG | + | tig0028827:41537-41556 | Msa1439650:intron | 30.0% | |
| GTAAATAAGTAGAGTGTATG+AGG | - | tig0028827:41575-41594 | None:intergenic | 30.0% | |
| GATATTACAGCTAGAATAAG+GGG | + | tig0028827:41748-41767 | Msa1439650:intron | 30.0% | |
| ATATTACAGCTAGAATAAGG+GGG | + | tig0028827:41749-41768 | Msa1439650:intron | 30.0% | |
| !! | CTTTTCCACTTTTGTAAAAG+TGG | - | tig0028827:41807-41826 | None:intergenic | 30.0% |
| ! | CTTTTACAAAAGTGGAAAAG+TGG | + | tig0028827:41807-41826 | Msa1439650:intron | 30.0% |
| GTTAAAAAAGGGGAGAAATA+AGG | + | tig0028827:41952-41971 | Msa1439650:intron | 30.0% | |
| AAACGACACTTAAAAAGGAA+CGG | - | tig0028827:42585-42604 | None:intergenic | 30.0% | |
| !! | TATACCCTCATTTTAATCCA+CGG | + | tig0028827:42102-42121 | Msa1439650:intron | 30.0% |
| ! | TTATCCGTGGATTAAAATGA+GGG | - | tig0028827:42109-42128 | None:intergenic | 30.0% |
| ! | ATTATCCGTGGATTAAAATG+AGG | - | tig0028827:42110-42129 | None:intergenic | 30.0% |
| CTTCATGGAACTATTATCAT+AGG | + | tig0028827:42341-42360 | Msa1439650:intron | 30.0% | |
| !!! | GTGTCGTTTTGGTATTTTAA+GGG | - | tig0028827:42538-42557 | None:intergenic | 30.0% |
| !!! | AGTGTCGTTTTGGTATTTTA+AGG | - | tig0028827:42539-42558 | None:intergenic | 30.0% |
| !!! | CCTTTTTAAGTGTCGTTTTA+GGG | - | tig0028827:42031-42050 | None:intergenic | 30.0% |
| !!! | TCCTTTTTAAGTGTCGTTTT+AGG | - | tig0028827:42030-42049 | None:intergenic | 30.0% |
| AAACGACACTTAAAAAGGAA+CGG | + | tig0028827:42585-42604 | Msa1439650:intron | 30.0% | |
| CTTCAAAATAGAACTCCATT+AGG | + | tig0028827:42727-42746 | Msa1439650:intron | 30.0% | |
| GCAAAGTTTACAAAACCTAA+TGG | - | tig0028827:42745-42764 | None:intergenic | 30.0% | |
| TGAATCAAAGTAGAAAAGAG+TGG | + | tig0028827:42849-42868 | Msa1439650:intron | 30.0% | |
| CACTAGTGATACATGAATTA+GGG | + | tig0028827:42895-42914 | Msa1439650:intron | 30.0% | |
| GTTAAACTTGTATCATGAGA+CGG | + | tig0028827:42917-42936 | Msa1439650:intron | 30.0% | |
| TTAAACTTGTATCATGAGAC+GGG | + | tig0028827:42918-42937 | Msa1439650:intron | 30.0% | |
| TCTAATAATGGCAAAATGTC+AGG | + | tig0028827:43076-43095 | Msa1439650:intron | 30.0% | |
| ! | GCATGCTATAATTTGCAAAA+TGG | + | tig0028827:43114-43133 | Msa1439650:intron | 30.0% |
| ! | CTGTCAAGATGAATATCTTT+TGG | - | tig0028827:43531-43550 | None:intergenic | 30.0% |
| CTTGTTAATAAGTGTTCTCT+AGG | + | tig0028827:43659-43678 | Msa1439650:intron | 30.0% | |
| ! | TGTTCTCTAGGAAATTGTTA+AGG | + | tig0028827:43671-43690 | Msa1439650:intron | 30.0% |
| CAACATGTGTTAATGAATGT+TGG | - | tig0028827:43908-43927 | None:intergenic | 30.0% | |
| !! | TTGATTTGCTACTGTATCTA+AGG | - | tig0028827:44386-44405 | None:intergenic | 30.0% |
| GCACCTGAGAAATATAAAAT+TGG | - | tig0028827:44967-44986 | None:intergenic | 30.0% | |
| GAATACACCAACACTAAATA+AGG | - | tig0028827:45204-45223 | None:intergenic | 30.0% | |
| CAAAATATGAAGTTCTATCG+TGG | - | tig0028827:45301-45320 | None:intergenic | 30.0% | |
| !!! | CTTTTTCAAGGTGAATAACT+AGG | - | tig0028827:45397-45416 | None:intergenic | 30.0% |
| !!! | GGTTAGAATTCACTTTTTCA+AGG | - | tig0028827:45409-45428 | None:intergenic | 30.0% |
| !!! | TTTTTTGTCAAGTAGTCTAG+GGG | - | tig0028827:45430-45449 | None:intergenic | 30.0% |
| TAAATTAGTCCCAAAAGAGA+AGG | + | tig0028827:45577-45596 | Msa1439650:intron | 30.0% | |
| ! | TGAGGTATCTATTTGATTCA+AGG | + | tig0028827:45650-45669 | Msa1439650:intron | 30.0% |
| !! | TCAGTAATGGATATTACTGA+GGG | + | tig0028827:45783-45802 | Msa1439650:intron | 30.0% |
| ATTATTCCCTCAGTAATTAC+TGG | + | tig0028827:45901-45920 | Msa1439650:intron | 30.0% | |
| TTATTCCCTCAGTAATTACT+GGG | + | tig0028827:45902-45921 | Msa1439650:intron | 30.0% | |
| ! | AAAATATATCTAGCTTGACG+TGG | + | tig0028827:46136-46155 | Msa1439650:intron | 30.0% |
| TAATTCAAAATTAGGGAAGG+GGG | + | tig0028827:46181-46200 | Msa1439650:intron | 30.0% | |
| AGCCACTAGTATATAAGTAT+AGG | + | tig0028827:46612-46631 | Msa1439650:three_prime_UTR | 30.0% | |
| TTAACAACCATGGAGAACAT+TGG | + | tig0028827:38283-38302 | Msa1439650:exon | 35.0% | |
| TGATGAGTACAAGCTTTACT+GGG | + | tig0028827:38306-38325 | Msa1439650:CDS | 35.0% | |
| TTGTTACCTATCAAGCTCTT+GGG | - | tig0028827:38353-38372 | None:intergenic | 35.0% | |
| ATTGTTACCTATCAAGCTCT+TGG | - | tig0028827:38354-38373 | None:intergenic | 35.0% | |
| CTAAGAACATTGTCTCTGAA+AGG | + | tig0028827:38551-38570 | Msa1439650:CDS | 35.0% | |
| ! | ACATTGTCTCTGAAAGGAAT+AGG | + | tig0028827:38557-38576 | Msa1439650:CDS | 35.0% |
| ! | GTCGCAAAATCCTGTATTTT+AGG | - | tig0028827:38958-38977 | None:intergenic | 35.0% |
| TCGAAAGGGAATAGCAAAAT+CGG | - | tig0028827:39222-39241 | None:intergenic | 35.0% | |
| TAACCTAGGTTGTCAAAATC+GGG | - | tig0028827:39258-39277 | None:intergenic | 35.0% | |
| CTAACCTAGGTTGTCAAAAT+CGG | - | tig0028827:39259-39278 | None:intergenic | 35.0% | |
| !! | GAGATAATGGAACTTGAATC+TGG | + | tig0028827:39487-39506 | Msa1439650:CDS | 35.0% |
| TTTACCTCAAGGACTTCAAT+TGG | - | tig0028827:39628-39647 | None:intergenic | 35.0% | |
| TTGAAGTCCTTGAGGTAAAT+TGG | + | tig0028827:39629-39648 | Msa1439650:intron | 35.0% | |
| !!! | AACGTTCATTTTGAAACGGA+GGG | - | tig0028827:39844-39863 | None:intergenic | 35.0% |
| !!! | CGACACTCATTTTAAAACAG+AGG | + | tig0028827:40095-40114 | Msa1439650:intron | 35.0% |
| CTATATTTATTGTTGGGGGT+TGG | - | tig0028827:40758-40777 | None:intergenic | 35.0% | |
| GCATCAATAATACAAGAGAG+AGG | - | tig0028827:40807-40826 | None:intergenic | 35.0% | |
| ATACATGGGAGAGAATACAA+TGG | + | tig0028827:40942-40961 | Msa1439650:CDS | 35.0% | |
| TGAGCTTGACATGTAACAAA+AGG | + | tig0028827:40968-40987 | Msa1439650:CDS | 35.0% | |
| GAGCTTGACATGTAACAAAA+GGG | + | tig0028827:40969-40988 | Msa1439650:CDS | 35.0% | |
| TTTGAAGACAGTCTTCATTG+AGG | + | tig0028827:41080-41099 | Msa1439650:CDS | 35.0% | |
| !!! | CTATTGATTTTGAAGCATGG+AGG | - | tig0028827:41775-41794 | None:intergenic | 35.0% |
| !!! | GGTCTATTGATTTTGAAGCA+TGG | - | tig0028827:41778-41797 | None:intergenic | 35.0% |
| ! | ACTTTTGTAAAAGTGGTGAG+CGG | - | tig0028827:41800-41819 | None:intergenic | 35.0% |
| TACCACGTGTGTAATAAGAT+TGG | + | tig0028827:41909-41928 | Msa1439650:intron | 35.0% | |
| TACCAATCTTATTACACACG+TGG | - | tig0028827:41914-41933 | None:intergenic | 35.0% | |
| CGTGTGTAATAAGATTGGTA+TGG | + | tig0028827:41914-41933 | Msa1439650:intron | 35.0% | |
| CTCTCTTTCTCCAACAAATT+CGG | + | tig0028827:42200-42219 | Msa1439650:intron | 35.0% | |
| TACCAAAACGACACTTGAAT+AGG | + | tig0028827:42544-42563 | Msa1439650:intron | 35.0% | |
| !!! | TTCCTATTCAAGTGTCGTTT+TGG | - | tig0028827:42549-42568 | None:intergenic | 35.0% |
| CCCTAAAACGACACTTAAAA+AGG | + | tig0028827:42580-42599 | Msa1439650:intron | 35.0% | |
| !! | TTAGGGAGAGTGTATTCTTT+TGG | + | tig0028827:42689-42708 | Msa1439650:intron | 35.0% |
| TCTCTATTCTATGCTTGAGA+GGG | - | tig0028827:42778-42797 | None:intergenic | 35.0% | |
| ATCTCTATTCTATGCTTGAG+AGG | - | tig0028827:42779-42798 | None:intergenic | 35.0% | |
| ATCAAAGTAGAAAAGAGTGG+AGG | + | tig0028827:42852-42871 | Msa1439650:intron | 35.0% | |
| TCAAAGTAGAAAAGAGTGGA+GGG | + | tig0028827:42853-42872 | Msa1439650:intron | 35.0% | |
| CCTAATTCATGTATCACTAG+TGG | - | tig0028827:42897-42916 | None:intergenic | 35.0% | |
| CCACTAGTGATACATGAATT+AGG | + | tig0028827:42894-42913 | Msa1439650:intron | 35.0% | |
| AAAAATTAAACCACGCGGTA+AGG | - | tig0028827:43023-43042 | None:intergenic | 35.0% | |
| !! | TGACAAGGATTTTGCCATTT+TGG | - | tig0028827:43181-43200 | None:intergenic | 35.0% |
| ATATACACGCAGATATGACA+AGG | - | tig0028827:43196-43215 | None:intergenic | 35.0% | |
| !! | AAATGTTAACTTGTGCCCTT+GGG | - | tig0028827:43507-43526 | None:intergenic | 35.0% |
| TTCAAAGCTCATCAGAGTTA+GGG | + | tig0028827:43588-43607 | Msa1439650:intron | 35.0% | |
| ! | GGTGAAGAATCTTTTCTTTG+TGG | - | tig0028827:43846-43865 | None:intergenic | 35.0% |
| ATAAGTGTTCCACTCATTGT+GGG | - | tig0028827:45124-45143 | None:intergenic | 35.0% | |
| AATAAGTGTTCCACTCATTG+TGG | - | tig0028827:45125-45144 | None:intergenic | 35.0% | |
| GTGTTGGAGAGATAGATTTA+CGG | - | tig0028827:45535-45554 | None:intergenic | 35.0% | |
| TGCACAAAATCTGTCAGTAA+TGG | + | tig0028827:45770-45789 | Msa1439650:intron | 35.0% | |
| !! | GTCAGTAATGGATATTACTG+AGG | + | tig0028827:45782-45801 | Msa1439650:intron | 35.0% |
| AATGGATATTACTGAGGGAT+TGG | + | tig0028827:45788-45807 | Msa1439650:intron | 35.0% | |
| ACTGATGTCAGTATTACTGA+GGG | - | tig0028827:45817-45836 | None:intergenic | 35.0% | |
| TACTGATGTCAGTATTACTG+AGG | - | tig0028827:45818-45837 | None:intergenic | 35.0% | |
| ACTGACATCAGTATTGTTAC+TGG | + | tig0028827:45825-45844 | Msa1439650:intron | 35.0% | |
| TATTCCCTCAGTAATTACTG+GGG | + | tig0028827:45903-45922 | Msa1439650:intron | 35.0% | |
| CTCACGTTGGACATAATTAA+CGG | - | tig0028827:46441-46460 | None:intergenic | 35.0% | |
| CACGTGAATGAGCAATAAAA+GGG | + | tig0028827:46540-46559 | Msa1439650:intron | 35.0% | |
| CTATGAAAATACGAAAGCCA+CGG | - | tig0028827:46647-46666 | None:intergenic | 35.0% | |
| GTGATGAGTACAAGCTTTAC+TGG | + | tig0028827:38305-38324 | Msa1439650:CDS | 40.0% | |
| !!! | GATTGGATGAGGCTTTTTCA+GGG | + | tig0028827:38479-38498 | Msa1439650:CDS | 40.0% |
| ! | TTGTCTCTGAAAGGAATAGG+AGG | + | tig0028827:38560-38579 | Msa1439650:CDS | 40.0% |
| CGAAAGGGAATAGCAAAATC+GGG | - | tig0028827:39221-39240 | None:intergenic | 40.0% | |
| GACTTTACTTCAGGTCGAAA+GGG | - | tig0028827:39236-39255 | None:intergenic | 40.0% | |
| CAAAATCGGGACTTTACTTC+AGG | - | tig0028827:39245-39264 | None:intergenic | 40.0% | |
| ATCAATCGAACGTCTAACCT+AGG | - | tig0028827:39272-39291 | None:intergenic | 40.0% | |
| CTGATCTGTTCTCTTCTTCT+TGG | - | tig0028827:39575-39594 | None:intergenic | 40.0% | |
| CTTTCCAATTGAAGTCCTTG+AGG | + | tig0028827:39621-39640 | Msa1439650:CDS | 40.0% | |
| GAGATGATGATAGAGACAGT+GGG | - | tig0028827:39655-39674 | None:intergenic | 40.0% | |
| AGAGATGATGATAGAGACAG+TGG | - | tig0028827:39656-39675 | None:intergenic | 40.0% | |
| ATCACTGAGCTCACAACTTA+TGG | + | tig0028827:39721-39740 | Msa1439650:intron | 40.0% | |
| CCAAGTTATGTGTGAGTCAA+TGG | - | tig0028827:39748-39767 | None:intergenic | 40.0% | |
| !! | CCATTGACTCACACATAACT+TGG | + | tig0028827:39745-39764 | Msa1439650:intron | 40.0% |
| !!! | TTCATTTTGAAACGGAGGGA+TGG | - | tig0028827:39840-39859 | None:intergenic | 40.0% |
| !!! | CAACGTTCATTTTGAAACGG+AGG | - | tig0028827:39845-39864 | None:intergenic | 40.0% |
| AATGGTAGCCCTTATTAAGG+TGG | - | tig0028827:40620-40639 | None:intergenic | 40.0% | |
| TATATGGTTGAGTGCAGCTT+AGG | + | tig0028827:40914-40933 | Msa1439650:intron | 40.0% | |
| ATATGGTTGAGTGCAGCTTA+GGG | + | tig0028827:40915-40934 | Msa1439650:intron | 40.0% | |
| CAGCTTAGGGTTACATACAT+GGG | + | tig0028827:40928-40947 | Msa1439650:intron | 40.0% | |
| TAACAAAAGGGCAGACACAA+TGG | + | tig0028827:40981-41000 | Msa1439650:CDS | 40.0% | |
| GCATTGTTATATGTAGGGGT+CGG | + | tig0028827:41541-41560 | Msa1439650:intron | 40.0% | |
| CATTGTTATATGTAGGGGTC+GGG | + | tig0028827:41542-41561 | Msa1439650:intron | 40.0% | |
| ATTGTTATATGTAGGGGTCG+GGG | + | tig0028827:41543-41562 | Msa1439650:intron | 40.0% | |
| ! | CTTTTGTAAAAGTGGTGAGC+GGG | - | tig0028827:41799-41818 | None:intergenic | 40.0% |
| !! | GCTCACCACTTTTACAAAAG+TGG | + | tig0028827:41799-41818 | Msa1439650:intron | 40.0% |
| GGTACTTAACTCGAATGTTC+TGG | - | tig0028827:41893-41912 | None:intergenic | 40.0% | |
| GACACTTAAAAAGGAACGGA+GGG | - | tig0028827:42589-42608 | None:intergenic | 40.0% | |
| GACACTTAAAAAGGAACGGA+TGG | + | tig0028827:42589-42608 | Msa1439650:intron | 40.0% | |
| !!! | GGATTTTGCCATTTTGGTGT+GGG | - | tig0028827:43175-43194 | None:intergenic | 40.0% |
| !!! | AGGATTTTGCCATTTTGGTG+TGG | - | tig0028827:43176-43195 | None:intergenic | 40.0% |
| !! | TCATGTTAACTTGTGCCCTT+AGG | + | tig0028827:43349-43368 | Msa1439650:intron | 40.0% |
| !! | CATGTTAACTTGTGCCCTTA+GGG | + | tig0028827:43350-43369 | Msa1439650:intron | 40.0% |
| !! | TTCCTTAACTTGTGCCCTAA+GGG | - | tig0028827:43367-43386 | None:intergenic | 40.0% |
| TTCCTTAACTTATGCCCCAA+GGG | + | tig0028827:43489-43508 | Msa1439650:intron | 40.0% | |
| !! | AATGTTAACTTGTGCCCTTG+GGG | - | tig0028827:43506-43525 | None:intergenic | 40.0% |
| !! | GAAATGTTAACTTGTGCCCT+TGG | - | tig0028827:43508-43527 | None:intergenic | 40.0% |
| CTTCAAAGCTCATCAGAGTT+AGG | + | tig0028827:43587-43606 | Msa1439650:intron | 40.0% | |
| ! | CAGAGTTAGGGTTGATTTCA+AGG | + | tig0028827:43600-43619 | Msa1439650:intron | 40.0% |
| AAAGCTGAAGGTCGTTATCA+AGG | - | tig0028827:43867-43886 | None:intergenic | 40.0% | |
| TTTATGGGCAAGTTTCCATG+AGG | + | tig0028827:44221-44240 | Msa1439650:intron | 40.0% | |
| TTGATATGTCCCACAATGAG+TGG | + | tig0028827:45112-45131 | Msa1439650:intron | 40.0% | |
| TCAAGTAACCCTATTGTGGA+TGG | + | tig0028827:45682-45701 | Msa1439650:intron | 40.0% | |
| TGCTAAGACCATCCACAATA+GGG | - | tig0028827:45693-45712 | None:intergenic | 40.0% | |
| ATGCTAAGACCATCCACAAT+AGG | - | tig0028827:45694-45713 | None:intergenic | 40.0% | |
| TTGTGCATTACTGAGTCTCA+AGG | - | tig0028827:45757-45776 | None:intergenic | 40.0% | |
| GACATCAGTATTGTTACTGG+CGG | + | tig0028827:45828-45847 | Msa1439650:intron | 40.0% | |
| ! | GCGGAATTTTCCCTCAATAA+CGG | + | tig0028827:45847-45866 | Msa1439650:intron | 40.0% |
| !! | ATTTTCCCTCAATAACGGAG+AGG | + | tig0028827:45852-45871 | Msa1439650:intron | 40.0% |
| AACTACCTCTCCGTTATTGA+GGG | - | tig0028827:45860-45879 | None:intergenic | 40.0% | |
| TAACTACCTCTCCGTTATTG+AGG | - | tig0028827:45861-45880 | None:intergenic | 40.0% | |
| ATTCCCTCAGTAATTACTGG+GGG | + | tig0028827:45904-45923 | Msa1439650:intron | 40.0% | |
| CCCTTCATTAGATGCTCATA+GGG | - | tig0028827:46384-46403 | None:intergenic | 40.0% | |
| CCCTATGAGCATCTAATGAA+GGG | + | tig0028827:46381-46400 | Msa1439650:exon | 40.0% | |
| TCCCTTCATTAGATGCTCAT+AGG | - | tig0028827:46385-46404 | None:intergenic | 40.0% | |
| GAACATGAGTTAACTCACGT+TGG | - | tig0028827:46454-46473 | None:intergenic | 40.0% | |
| GCACGTGAATGAGCAATAAA+AGG | + | tig0028827:46539-46558 | Msa1439650:intron | 40.0% | |
| CTCATCACCAATGTTCTCCA+TGG | - | tig0028827:38293-38312 | None:intergenic | 45.0% | |
| TTGGGTTTGGAGGAACATGT+TGG | - | tig0028827:38335-38354 | None:intergenic | 45.0% | |
| TATCAAGCTCTTGGGTTTGG+AGG | - | tig0028827:38345-38364 | None:intergenic | 45.0% | |
| TCCAAACCCAAGAGCTTGAT+AGG | + | tig0028827:38344-38363 | Msa1439650:CDS | 45.0% | |
| ACCTATCAAGCTCTTGGGTT+TGG | - | tig0028827:38348-38367 | None:intergenic | 45.0% | |
| TATATGGTTGTGGTTGCAGC+TGG | + | tig0028827:38455-38474 | Msa1439650:intron | 45.0% | |
| ATATGGTTGTGGTTGCAGCT+GGG | + | tig0028827:38456-38475 | Msa1439650:intron | 45.0% | |
| !! | GGATTGGATGAGGCTTTTTC+AGG | + | tig0028827:38478-38497 | Msa1439650:CDS | 45.0% |
| TATGATTCAAGCTCCCCAGA+TGG | + | tig0028827:38505-38524 | Msa1439650:CDS | 45.0% | |
| ACTCTTTGCACTTAGAGCAG+TGG | + | tig0028827:38600-38619 | Msa1439650:CDS | 45.0% | |
| AGTGGTCCCAAACATTAGCA+AGG | + | tig0028827:38618-38637 | Msa1439650:CDS | 45.0% | |
| GGACTTTACTTCAGGTCGAA+AGG | - | tig0028827:39237-39256 | None:intergenic | 45.0% | |
| !! | AGTCCCGATTTTGACAACCT+AGG | + | tig0028827:39252-39271 | Msa1439650:intron | 45.0% |
| ! | AAGAGCTTCCTGTGTTGCTA+AGG | + | tig0028827:39548-39567 | Msa1439650:CDS | 45.0% |
| TTCTTGGACCTTAGCAACAC+AGG | - | tig0028827:39559-39578 | None:intergenic | 45.0% | |
| GGCAATGGTAGCCCTTATTA+AGG | - | tig0028827:40623-40642 | None:intergenic | 45.0% | |
| ! | TTCTCTACTAGGGTACCTGA+TGG | - | tig0028827:40649-40668 | None:intergenic | 45.0% |
| GCAGCTTAGGGTTACATACA+TGG | + | tig0028827:40927-40946 | Msa1439650:intron | 45.0% | |
| ! | GCCAACATCACCTCTTTTTC+AGG | + | tig0028827:41051-41070 | Msa1439650:CDS | 45.0% |
| GCCTGAAAAAGAGGTGATGT+TGG | - | tig0028827:41055-41074 | None:intergenic | 45.0% | |
| !!! | ACATCACCTCTTTTTCAGGC+AGG | + | tig0028827:41055-41074 | Msa1439650:CDS | 45.0% |
| CAAAAGCCTGCCTGAAAAAG+AGG | - | tig0028827:41064-41083 | None:intergenic | 45.0% | |
| ! | ATGAATAAGTGGGGTGTCTG+TGG | - | tig0028827:41352-41371 | None:intergenic | 45.0% |
| TGTGAGCATAGCTCAGTTGA+CGG | + | tig0028827:41512-41531 | Msa1439650:intron | 45.0% | |
| CGACACTTAAAAAGGAACGG+AGG | - | tig0028827:42588-42607 | None:intergenic | 45.0% | |
| TCACATCACCCACACCAAAA+TGG | + | tig0028827:43164-43183 | Msa1439650:intron | 45.0% | |
| !!! | TAGTGTTTTGGGGCTCGTTA+GGG | + | tig0028827:43248-43267 | Msa1439650:intron | 45.0% |
| !! | GTTCCTTAACTTGTGCCCTA+AGG | - | tig0028827:43368-43387 | None:intergenic | 45.0% |
| GTTCCTTAACTTATGCCCCA+AGG | + | tig0028827:43488-43507 | Msa1439650:intron | 45.0% | |
| !! | TGAGAGTGCTCTCAAAGCAT+TGG | - | tig0028827:43803-43822 | None:intergenic | 45.0% |
| ! | CCAACTGATTTACACTCACG+TGG | - | tig0028827:45325-45344 | None:intergenic | 45.0% |
| CCACGTGAGTGTAAATCAGT+TGG | + | tig0028827:45322-45341 | Msa1439650:intron | 45.0% | |
| GTGAGTGTAAATCAGTTGGC+AGG | + | tig0028827:45326-45345 | Msa1439650:intron | 45.0% | |
| ! | AGGTGAATAACTAGGGTGTC+TGG | - | tig0028827:45389-45408 | None:intergenic | 45.0% |
| GAGGTCAAGTAACCCTATTG+TGG | + | tig0028827:45678-45697 | Msa1439650:intron | 45.0% | |
| GTTCCCCCAGTAATTACTGA+GGG | - | tig0028827:45910-45929 | None:intergenic | 45.0% | |
| TGTTCCCCCAGTAATTACTG+AGG | - | tig0028827:45911-45930 | None:intergenic | 45.0% | |
| AGGGTCATTAAGAGCTGCAA+TGG | - | tig0028827:46356-46375 | None:intergenic | 45.0% | |
| AGATGCTCATAGGGCTTAGA+GGG | - | tig0028827:46375-46394 | None:intergenic | 45.0% | |
| TAGATGCTCATAGGGCTTAG+AGG | - | tig0028827:46376-46395 | None:intergenic | 45.0% | |
| GCCCTATGAGCATCTAATGA+AGG | + | tig0028827:46380-46399 | Msa1439650:exon | 45.0% | |
| TAGCGTGAGTTAACTCACGT+AGG | + | tig0028827:46517-46536 | Msa1439650:intron | 45.0% | |
| AGTATAGGATTGAGGAACCG+TGG | + | tig0028827:46627-46646 | Msa1439650:three_prime_UTR | 45.0% | |
| !! | AATTACTAATAAATAATTAA+TGG | - | tig0028827:38667-38686 | None:intergenic | 5.0% |
| !!! | TATTTATATTTTATTATAGA+CGG | + | tig0028827:38842-38861 | Msa1439650:intron | 5.0% |
| !!! | ATATTTAGTATTAATTTTTT+TGG | + | tig0028827:39105-39124 | Msa1439650:intron | 5.0% |
| !!! | TATTTAGTATTAATTTTTTT+GGG | + | tig0028827:39106-39125 | Msa1439650:intron | 5.0% |
| !! | TTAAATAAAAAATAATACTT+TGG | + | tig0028827:39963-39982 | Msa1439650:intron | 5.0% |
| !!! | TTTTTTTTTTTTTTTTAAGA+TGG | - | tig0028827:40254-40273 | None:intergenic | 5.0% |
| !!! | AATATATATTTTTAATAAAG+AGG | - | tig0028827:41168-41187 | None:intergenic | 5.0% |
| !!! | GATAATTTTTAAAATAAAAT+TGG | - | tig0028827:41686-41705 | None:intergenic | 5.0% |
| !!! | ATTTTATTTTAAAAATTATC+AGG | + | tig0028827:41686-41705 | Msa1439650:intron | 5.0% |
| !! | ACAATAATTTAATAATATTT+AGG | + | tig0028827:42671-42690 | Msa1439650:intron | 5.0% |
| !! | CAATAATTTAATAATATTTA+GGG | + | tig0028827:42672-42691 | Msa1439650:intron | 5.0% |
| !! | TCAATTAAATTTAATATTTA+AGG | - | tig0028827:44605-44624 | None:intergenic | 5.0% |
| !!! | ATTTTTTTAATTCAAAATTA+GGG | + | tig0028827:46174-46193 | Msa1439650:intron | 5.0% |
| TATGGTTGTGGTTGCAGCTG+GGG | + | tig0028827:38457-38476 | Msa1439650:intron | 50.0% | |
| ! | TGATGATGCTGCACCATCTG+GGG | - | tig0028827:38521-38540 | None:intergenic | 50.0% |
| ! | CTGATGATGCTGCACCATCT+GGG | - | tig0028827:38522-38541 | None:intergenic | 50.0% |
| CAGTGGGCCAATTTACCTCA+AGG | - | tig0028827:39639-39658 | None:intergenic | 50.0% | |
| ! | TACTAGGGTACCTGATGGTG+TGG | - | tig0028827:40644-40663 | None:intergenic | 50.0% |
| TAAACCACGCGGTAAGGTCT+TGG | - | tig0028827:43017-43036 | None:intergenic | 50.0% | |
| TGGTGTGGGTGATGTGAGAA+AGG | - | tig0028827:43161-43180 | None:intergenic | 50.0% | |
| !!! | GTAGTGTTTTGGGGCTCGTT+AGG | + | tig0028827:43247-43266 | Msa1439650:intron | 50.0% |
| TGCCCTTAGGGCACAAGTTA+AGG | + | tig0028827:43362-43381 | Msa1439650:intron | 50.0% | |
| TGCCCTTGGGGCATAAGTTA+AGG | - | tig0028827:43494-43513 | None:intergenic | 50.0% | |
| TTGTGGTTGCAGCTGGGGAT+TGG | + | tig0028827:38462-38481 | Msa1439650:intron | 55.0% | |
| TTGCAGCTGGGGATTGGATG+AGG | + | tig0028827:38468-38487 | Msa1439650:intron | 55.0% | |
| ! | CCTGATGATGCTGCACCATC+TGG | - | tig0028827:38523-38542 | None:intergenic | 55.0% |
| CCAGATGGTGCAGCATCATC+AGG | + | tig0028827:38520-38539 | Msa1439650:CDS | 55.0% | |
| GCTACCATTGCCACACCATC+AGG | + | tig0028827:40631-40650 | Msa1439650:intron | 55.0% | |
| ! | GGTACCTGATGGTGTGGCAA+TGG | - | tig0028827:40638-40657 | None:intergenic | 55.0% |
| ATGACCAAGACCTTACCGCG+TGG | + | tig0028827:43010-43029 | Msa1439650:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0028827 | gene | 38157 | 46750 | 38157 | ID=Msa1439650;Name=Msa1439650 |
| tig0028827 | mRNA | 38157 | 46750 | 38157 | ID=Msa1439650-mRNA-1;Parent=Msa1439650;Name=Msa1439650-mRNA-1;_AED=0.17;_eAED=0.17;_QI=135|1|1|1|0.8|0.66|6|169|244 |
| tig0028827 | exon | 38157 | 38365 | 38157 | ID=Msa1439650-mRNA-1:exon:11878;Parent=Msa1439650-mRNA-1 |
| tig0028827 | exon | 38474 | 38639 | 38474 | ID=Msa1439650-mRNA-1:exon:11879;Parent=Msa1439650-mRNA-1 |
| tig0028827 | exon | 39409 | 39642 | 39409 | ID=Msa1439650-mRNA-1:exon:11880;Parent=Msa1439650-mRNA-1 |
| tig0028827 | exon | 40931 | 41101 | 40931 | ID=Msa1439650-mRNA-1:exon:11881;Parent=Msa1439650-mRNA-1 |
| tig0028827 | exon | 46307 | 46401 | 46307 | ID=Msa1439650-mRNA-1:exon:11882;Parent=Msa1439650-mRNA-1 |
| tig0028827 | exon | 46587 | 46750 | 46587 | ID=Msa1439650-mRNA-1:exon:11883;Parent=Msa1439650-mRNA-1 |
| tig0028827 | five_prime_UTR | 38157 | 38291 | 38157 | ID=Msa1439650-mRNA-1:five_prime_utr;Parent=Msa1439650-mRNA-1 |
| tig0028827 | CDS | 38292 | 38365 | 38292 | ID=Msa1439650-mRNA-1:cds;Parent=Msa1439650-mRNA-1 |
| tig0028827 | CDS | 38474 | 38639 | 38474 | ID=Msa1439650-mRNA-1:cds;Parent=Msa1439650-mRNA-1 |
| tig0028827 | CDS | 39409 | 39642 | 39409 | ID=Msa1439650-mRNA-1:cds;Parent=Msa1439650-mRNA-1 |
| tig0028827 | CDS | 40931 | 41101 | 40931 | ID=Msa1439650-mRNA-1:cds;Parent=Msa1439650-mRNA-1 |
| tig0028827 | CDS | 46307 | 46396 | 46307 | ID=Msa1439650-mRNA-1:cds;Parent=Msa1439650-mRNA-1 |
| tig0028827 | three_prime_UTR | 46397 | 46401 | 46397 | ID=Msa1439650-mRNA-1:three_prime_utr;Parent=Msa1439650-mRNA-1 |
| tig0028827 | three_prime_UTR | 46587 | 46750 | 46587 | ID=Msa1439650-mRNA-1:three_prime_utr;Parent=Msa1439650-mRNA-1 |
| Gene Sequence |
| Protein sequence |
