Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0283490 | XP_003595077.1 | 94.262 | 244 | 14 | 0 | 1 | 244 | 1 | 244 | 5.51e-169 | 476 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0283490 | sp|Q2HIV9|BH035_ARATH | 62.449 | 245 | 83 | 6 | 1 | 241 | 1 | 240 | 2.03e-94 | 280 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0283490 | G7IG90 | 94.262 | 244 | 14 | 0 | 1 | 244 | 1 | 244 | 2.63e-169 | 476 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0283490 | TF | bHLH |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0043740 | Msa0283490 | 0.816913 | 4.327241e-52 | -8.615850e-47 |
| Msa0051050 | Msa0283490 | 0.839894 | 1.205481e-57 | -8.615850e-47 |
| Msa0090090 | Msa0283490 | 0.822066 | 2.890073e-53 | -8.615850e-47 |
| Msa0101240 | Msa0283490 | 0.824658 | 7.165158e-54 | -8.615850e-47 |
| Msa0137560 | Msa0283490 | 0.809147 | 2.184835e-50 | -8.615850e-47 |
| Msa0151990 | Msa0283490 | 0.814013 | 1.912331e-51 | -8.615850e-47 |
| Msa0156300 | Msa0283490 | 0.800891 | 1.165272e-48 | -8.615850e-47 |
| Msa0189600 | Msa0283490 | 0.805844 | 1.097071e-49 | -8.615850e-47 |
| Msa0204830 | Msa0283490 | 0.882496 | 9.922775e-71 | -8.615850e-47 |
| Msa0244890 | Msa0283490 | 0.956645 | 1.809622e-114 | -8.615850e-47 |
| Msa0244900 | Msa0283490 | 0.869792 | 2.373547e-66 | -8.615850e-47 |
| Msa0254260 | Msa0283490 | 0.835016 | 2.143886e-56 | -8.615850e-47 |
| Msa0271540 | Msa0283490 | 0.829089 | 6.255113e-55 | -8.615850e-47 |
| Msa0283480 | Msa0283490 | 0.867133 | 1.713334e-65 | -8.615850e-47 |
| Msa0283490 | Msa0283500 | 0.804408 | 2.191222e-49 | -8.615850e-47 |
| Msa0283490 | Msa0283600 | 0.802640 | 5.097104e-49 | -8.615850e-47 |
| Msa0283490 | Msa0290680 | 0.807921 | 3.991373e-50 | -8.615850e-47 |
| Msa0283490 | Msa0300840 | 0.819930 | 8.966600e-53 | -8.615850e-47 |
| Msa0283490 | Msa0319260 | 0.832434 | 9.473996e-56 | -8.615850e-47 |
| Msa0283490 | Msa0319270 | 0.809591 | 1.754737e-50 | -8.615850e-47 |
| Msa0283490 | Msa0321580 | 0.803883 | 2.817841e-49 | -8.615850e-47 |
| Msa0283490 | Msa0331970 | 0.889160 | 3.104630e-73 | -8.615850e-47 |
| Msa0283490 | Msa0332390 | 0.823387 | 1.423336e-53 | -8.615850e-47 |
| Msa0283490 | Msa0338340 | 0.810618 | 1.053893e-50 | -8.615850e-47 |
| Msa0283490 | Msa0408340 | 0.828111 | 1.078041e-54 | -8.615850e-47 |
| Msa0283490 | Msa0427700 | 0.817713 | 2.858715e-52 | -8.615850e-47 |
| Msa0283490 | Msa0501410 | 0.800094 | 1.693252e-48 | -8.615850e-47 |
| Msa0283490 | Msa0567380 | 0.838731 | 2.415486e-57 | -8.615850e-47 |
| Msa0283490 | Msa0568800 | 0.818649 | 1.756083e-52 | -8.615850e-47 |
| Msa0283490 | Msa0599140 | 0.805009 | 1.641399e-49 | -8.615850e-47 |
| Msa0283490 | Msa0614380 | 0.855751 | 5.111242e-62 | -8.615850e-47 |
| Msa0283490 | Msa0697590 | 0.824712 | 6.956196e-54 | -8.615850e-47 |
| Msa0283490 | Msa0758850 | 0.805821 | 1.109144e-49 | -8.615850e-47 |
| Msa0283490 | Msa1029870 | 0.805624 | 1.220022e-49 | -8.615850e-47 |
| Msa0283490 | Msa1043120 | 0.819334 | 1.226860e-52 | -8.615850e-47 |
| Msa0283490 | Msa1074890 | 0.802903 | 4.499003e-49 | -8.615850e-47 |
| Msa0283490 | Msa1084640 | 0.817431 | 3.309878e-52 | -8.615850e-47 |
| Msa0283490 | Msa1115740 | 0.802346 | 5.859525e-49 | -8.615850e-47 |
| Msa0283490 | Msa1162240 | 0.800516 | 1.389315e-48 | -8.615850e-47 |
| Msa0283490 | Msa1169460 | 0.801519 | 8.665870e-49 | -8.615850e-47 |
| Msa0283490 | Msa1189820 | 0.831980 | 1.227174e-55 | -8.615850e-47 |
| Msa0283490 | Msa1266490 | 0.814809 | 1.275281e-51 | -8.615850e-47 |
| Msa0283490 | Msa1284990 | 0.819296 | 1.251096e-52 | -8.615850e-47 |
| Msa0283490 | Msa1360420 | 0.829285 | 5.608067e-55 | -8.615850e-47 |
| Msa0283490 | Msa1400340 | 0.817197 | 3.736037e-52 | -8.615850e-47 |
| Msa0283490 | Msa1409490 | 0.811715 | 6.096017e-51 | -8.615850e-47 |
| Msa0283490 | Msa1416730 | 0.808885 | 2.485749e-50 | -8.615850e-47 |
| Msa0283490 | Msa1439650 | 0.964974 | 5.244876e-124 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0283490 | MtrunA17_Chr2g0298751 | 94.262 | 244 | 14 | 0 | 1 | 244 | 1 | 244 | 5.07e-173 | 476 |
| Msa0283490 | MtrunA17_Chr8g0365711 | 32.353 | 170 | 107 | 2 | 51 | 220 | 243 | 404 | 1.13e-23 | 98.6 |
| Msa0283490 | MtrunA17_Chr1g0211081 | 32.911 | 237 | 128 | 7 | 6 | 213 | 258 | 492 | 3.77e-22 | 94.7 |
| Msa0283490 | MtrunA17_Chr2g0320291 | 28.796 | 191 | 113 | 5 | 51 | 236 | 132 | 304 | 5.14e-19 | 84.3 |
| Msa0283490 | MtrunA17_Chr7g0252041 | 32.632 | 190 | 115 | 6 | 49 | 232 | 283 | 465 | 8.94e-18 | 82.0 |
| Msa0283490 | MtrunA17_Chr3g0131691 | 30.481 | 187 | 122 | 5 | 48 | 232 | 294 | 474 | 1.12e-17 | 81.6 |
| Msa0283490 | MtrunA17_Chr4g0028071 | 31.098 | 164 | 96 | 3 | 51 | 211 | 148 | 297 | 7.14e-17 | 78.6 |
| Msa0283490 | MtrunA17_Chr7g0260841 | 30.286 | 175 | 85 | 4 | 53 | 227 | 356 | 493 | 1.39e-14 | 72.8 |
| Msa0283490 | MtrunA17_Chr7g0275821 | 27.219 | 169 | 92 | 4 | 53 | 216 | 253 | 395 | 3.59e-14 | 71.2 |
| Msa0283490 | MtrunA17_Chr4g0049331 | 28.049 | 164 | 101 | 4 | 53 | 214 | 136 | 284 | 8.98e-14 | 69.3 |
| Msa0283490 | MtrunA17_Chr8g0366751 | 29.487 | 156 | 96 | 3 | 53 | 202 | 463 | 610 | 1.79e-13 | 69.3 |
| Msa0283490 | MtrunA17_Chr2g0333611 | 23.944 | 213 | 129 | 5 | 27 | 221 | 3 | 200 | 3.21e-13 | 66.6 |
| Msa0283490 | MtrunA17_Chr5g0411341 | 30.719 | 153 | 98 | 4 | 53 | 202 | 494 | 641 | 3.92e-13 | 68.6 |
| Msa0283490 | MtrunA17_Chr8g0346161 | 50.820 | 61 | 23 | 1 | 53 | 113 | 292 | 345 | 2.95e-12 | 65.9 |
| Msa0283490 | MtrunA17_Chr8g0346151 | 60.000 | 45 | 18 | 0 | 53 | 97 | 280 | 324 | 4.23e-12 | 65.1 |
| Msa0283490 | MtrunA17_Chr5g0400661 | 26.257 | 179 | 109 | 6 | 53 | 219 | 150 | 317 | 4.86e-12 | 64.7 |
| Msa0283490 | MtrunA17_Chr2g0280161 | 28.221 | 163 | 103 | 2 | 53 | 214 | 178 | 327 | 5.15e-12 | 64.7 |
| Msa0283490 | MtrunA17_Chr3g0141091 | 51.282 | 78 | 34 | 2 | 48 | 122 | 169 | 245 | 7.77e-12 | 63.9 |
| Msa0283490 | MtrunA17_Chr1g0185621 | 50.909 | 55 | 27 | 0 | 43 | 97 | 466 | 520 | 1.04e-11 | 64.3 |
| Msa0283490 | MtrunA17_Chr5g0411541 | 35.032 | 157 | 80 | 4 | 48 | 204 | 152 | 286 | 1.53e-11 | 63.2 |
| Msa0283490 | MtrunA17_Chr4g0048851 | 28.743 | 167 | 99 | 3 | 50 | 215 | 45 | 192 | 2.83e-11 | 61.2 |
| Msa0283490 | MtrunA17_Chr2g0333641 | 25.758 | 198 | 117 | 6 | 53 | 242 | 138 | 313 | 4.00e-11 | 62.0 |
| Msa0283490 | MtrunA17_Chr4g0054571 | 45.000 | 60 | 33 | 0 | 53 | 112 | 151 | 210 | 5.56e-11 | 61.6 |
| Msa0283490 | MtrunA17_Chr8g0336681 | 26.012 | 173 | 114 | 4 | 46 | 214 | 150 | 312 | 6.97e-11 | 61.2 |
| Msa0283490 | MtrunA17_Chr5g0400621 | 37.838 | 74 | 43 | 1 | 37 | 107 | 139 | 212 | 7.21e-11 | 61.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0283490 | AT5G57150.1 | 63.525 | 244 | 81 | 6 | 1 | 241 | 1 | 239 | 1.56e-96 | 283 |
| Msa0283490 | AT4G29930.1 | 55.200 | 250 | 98 | 3 | 1 | 238 | 1 | 248 | 4.84e-90 | 266 |
| Msa0283490 | AT4G29930.6 | 55.417 | 240 | 87 | 3 | 1 | 238 | 1 | 222 | 8.75e-88 | 259 |
| Msa0283490 | AT4G29930.2 | 55.000 | 240 | 85 | 3 | 1 | 238 | 1 | 219 | 7.94e-87 | 257 |
| Msa0283490 | AT5G57150.5 | 65.596 | 218 | 67 | 6 | 1 | 215 | 1 | 213 | 1.63e-86 | 256 |
| Msa0283490 | AT5G57150.2 | 63.801 | 221 | 71 | 6 | 1 | 217 | 1 | 216 | 1.47e-85 | 254 |
| Msa0283490 | AT5G57150.3 | 64.384 | 219 | 69 | 6 | 1 | 215 | 1 | 214 | 1.49e-85 | 254 |
| Msa0283490 | AT5G57150.4 | 64.384 | 219 | 69 | 6 | 1 | 215 | 1 | 214 | 6.71e-84 | 251 |
| Msa0283490 | AT4G29930.3 | 54.825 | 228 | 89 | 3 | 1 | 216 | 1 | 226 | 6.79e-80 | 241 |
| Msa0283490 | AT4G29930.7 | 54.825 | 228 | 89 | 3 | 1 | 216 | 1 | 226 | 6.79e-80 | 241 |
| Msa0283490 | AT4G29930.5 | 54.587 | 218 | 76 | 3 | 1 | 216 | 1 | 197 | 1.58e-76 | 231 |
| Msa0283490 | AT4G29930.4 | 54.857 | 175 | 65 | 3 | 1 | 163 | 1 | 173 | 8.28e-55 | 174 |
| Msa0283490 | AT1G12860.1 | 33.690 | 187 | 111 | 6 | 49 | 232 | 264 | 440 | 1.12e-18 | 84.7 |
| Msa0283490 | AT3G26744.1 | 32.447 | 188 | 116 | 5 | 49 | 232 | 304 | 484 | 2.24e-18 | 84.0 |
| Msa0283490 | AT3G26744.4 | 32.447 | 188 | 116 | 5 | 49 | 232 | 304 | 484 | 2.24e-18 | 84.0 |
| Msa0283490 | AT3G26744.2 | 32.447 | 188 | 116 | 5 | 49 | 232 | 304 | 484 | 2.24e-18 | 84.0 |
| Msa0283490 | AT2G28160.2 | 31.013 | 158 | 93 | 4 | 51 | 205 | 130 | 274 | 2.10e-17 | 80.1 |
| Msa0283490 | AT2G28160.1 | 31.013 | 158 | 93 | 4 | 51 | 205 | 130 | 274 | 2.25e-17 | 80.1 |
| Msa0283490 | AT2G16910.1 | 31.183 | 186 | 113 | 5 | 51 | 225 | 313 | 494 | 3.51e-17 | 80.9 |
| Msa0283490 | AT3G26744.6 | 34.568 | 162 | 95 | 5 | 49 | 206 | 304 | 458 | 1.81e-16 | 78.6 |
| Msa0283490 | AT1G01260.1 | 29.518 | 166 | 82 | 3 | 53 | 218 | 434 | 564 | 5.61e-16 | 77.4 |
| Msa0283490 | AT1G01260.2 | 29.518 | 166 | 82 | 3 | 53 | 218 | 434 | 564 | 5.61e-16 | 77.4 |
| Msa0283490 | AT1G01260.3 | 29.518 | 166 | 82 | 3 | 53 | 218 | 434 | 564 | 5.61e-16 | 77.4 |
| Msa0283490 | AT2G46510.1 | 61.818 | 55 | 21 | 0 | 53 | 107 | 396 | 450 | 2.87e-15 | 75.1 |
| Msa0283490 | AT1G12860.2 | 34.783 | 161 | 92 | 6 | 49 | 206 | 264 | 414 | 3.46e-15 | 74.7 |
| Msa0283490 | AT5G46760.1 | 29.032 | 186 | 115 | 7 | 53 | 233 | 416 | 589 | 3.56e-15 | 74.7 |
| Msa0283490 | AT4G17880.1 | 30.625 | 160 | 78 | 4 | 53 | 202 | 417 | 553 | 3.04e-14 | 72.0 |
| Msa0283490 | AT4G16430.1 | 46.053 | 76 | 40 | 1 | 53 | 127 | 321 | 396 | 3.77e-14 | 71.6 |
| Msa0283490 | AT1G32640.1 | 31.333 | 150 | 91 | 4 | 53 | 202 | 453 | 590 | 6.39e-14 | 71.2 |
| Msa0283490 | AT4G37850.2 | 29.444 | 180 | 107 | 6 | 53 | 228 | 153 | 316 | 1.45e-13 | 69.3 |
| Msa0283490 | AT4G37850.1 | 29.444 | 180 | 107 | 6 | 53 | 228 | 153 | 316 | 1.45e-13 | 69.3 |
| Msa0283490 | AT1G63650.3 | 29.213 | 178 | 116 | 4 | 41 | 212 | 397 | 570 | 5.18e-13 | 68.6 |
| Msa0283490 | AT1G63650.1 | 29.213 | 178 | 116 | 4 | 41 | 212 | 397 | 570 | 5.18e-13 | 68.6 |
| Msa0283490 | AT1G63650.2 | 29.213 | 178 | 116 | 4 | 41 | 212 | 397 | 570 | 5.18e-13 | 68.6 |
| Msa0283490 | AT5G46830.1 | 27.473 | 182 | 111 | 3 | 53 | 228 | 344 | 510 | 4.23e-12 | 65.9 |
| Msa0283490 | AT4G21330.1 | 30.357 | 168 | 107 | 4 | 51 | 218 | 31 | 188 | 5.26e-12 | 63.5 |
| Msa0283490 | AT1G10610.1 | 27.513 | 189 | 120 | 4 | 51 | 232 | 263 | 441 | 1.25e-11 | 64.3 |
| Msa0283490 | AT1G10610.2 | 27.513 | 189 | 120 | 4 | 51 | 232 | 233 | 411 | 1.62e-11 | 63.9 |
| Msa0283490 | AT1G10610.3 | 26.064 | 188 | 124 | 3 | 51 | 232 | 166 | 344 | 1.66e-11 | 63.5 |
| Msa0283490 | AT2G22770.1 | 23.834 | 193 | 117 | 3 | 33 | 209 | 113 | 291 | 5.29e-11 | 62.0 |
| Msa0283490 | AT4G00870.1 | 43.333 | 60 | 34 | 0 | 53 | 112 | 250 | 309 | 8.89e-11 | 61.6 |
Find 62 sgRNAs with CRISPR-Local
Find 454 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTAAGGTGGTTGGTTTATT+TGG | 0.143628 | 2_3:-20718507 | None:intergenic |
| TCTTGATCAAAATCATAATT+TGG | 0.197391 | 2_3:-20719844 | None:intergenic |
| CTGATCTGTTCTCTTCTTCT+TGG | 0.200519 | 2_3:-20719887 | None:intergenic |
| TGATGATTGAAAGAAATTTA+AGG | 0.231892 | 2_3:-20718523 | None:intergenic |
| GGATAAAGCTTCAATTATTA+AGG | 0.255192 | 2_3:+20719726 | Msa0283490:CDS |
| TAATTTGGATTAATATTATT+AGG | 0.270353 | 2_3:-20719829 | None:intergenic |
| ACCTATCAAGCTCTTGGGTT+TGG | 0.289916 | 2_3:-20718649 | None:intergenic |
| GTGATGAGTACAAGCTTTAC+TGG | 0.315934 | 2_3:+20718609 | Msa0283490:CDS |
| CCTGATGATGCTGCACCATC+TGG | 0.327488 | 2_3:-20718824 | None:intergenic |
| GAGATAATGGAACTTGAATC+TGG | 0.329852 | 2_3:+20719802 | Msa0283490:CDS |
| TGTTTACCTTGCTAATGTTT+GGG | 0.357210 | 2_3:-20718928 | None:intergenic |
| GATTATTCAAGCTGAGATAA+TGG | 0.358095 | 2_3:+20719789 | Msa0283490:CDS |
| TCCCTTCATTAGATGCTCAT+AGG | 0.368457 | 2_3:-20726998 | None:intergenic |
| TTTACCTCAAGGACTTCAAT+TGG | 0.374167 | 2_3:-20719940 | None:intergenic |
| ATTGTTACCTATCAAGCTCT+TGG | 0.383647 | 2_3:-20718655 | None:intergenic |
| ATGTTTACCTTGCTAATGTT+TGG | 0.403010 | 2_3:-20718929 | None:intergenic |
| TAGATGCTCATAGGGCTTAG+AGG | 0.411365 | 2_3:-20726989 | None:intergenic |
| TTGTGGTTGCAGCTGGGGAT+TGG | 0.412240 | 2_3:+20718766 | Msa0283490:intron |
| TTGTTACCTATCAAGCTCTT+GGG | 0.420680 | 2_3:-20718654 | None:intergenic |
| TTGCAGCTGGGGATTGGATG+AGG | 0.423798 | 2_3:+20718772 | Msa0283490:intron |
| TCCAAACCCAAGAGCTTGAT+AGG | 0.430262 | 2_3:+20718648 | Msa0283490:CDS |
| TGAAAGAAATTTAAGGTGGT+TGG | 0.431422 | 2_3:-20718516 | None:intergenic |
| GTTGTTAAAGTTGAAATTGA+AGG | 0.431964 | 2_3:-20718572 | None:intergenic |
| CCCTTCATTAGATGCTCATA+GGG | 0.440042 | 2_3:-20726997 | None:intergenic |
| TATCAAGCTCTTGGGTTTGG+AGG | 0.453409 | 2_3:-20718646 | None:intergenic |
| ACATTGTCTCTGAAAGGAAT+AGG | 0.453984 | 2_3:+20718861 | Msa0283490:CDS |
| GCCCTATGAGCATCTAATGA+AGG | 0.457378 | 2_3:+20726996 | Msa0283490:exon |
| CCAGATGGTGCAGCATCATC+AGG | 0.460325 | 2_3:+20718824 | Msa0283490:CDS |
| TGAGCTTGACATGTAACAAA+AGG | 0.468788 | 2_3:+20721284 | Msa0283490:CDS |
| CTGATGATGCTGCACCATCT+GGG | 0.496200 | 2_3:-20718823 | None:intergenic |
| AGCCACTAGTATATAAGTAT+AGG | 0.503320 | 2_3:+20727228 | Msa0283490:three_prime_UTR |
| GCAGCTTAGGGTTACATACA+TGG | 0.504078 | 2_3:+20721243 | Msa0283490:intron |
| AAGAGCTTCCTGTGTTGCTA+AGG | 0.527358 | 2_3:+20719863 | Msa0283490:CDS |
| TTGGGTTTGGAGGAACATGT+TGG | 0.533281 | 2_3:-20718636 | None:intergenic |
| CCCTATGAGCATCTAATGAA+GGG | 0.535852 | 2_3:+20726997 | Msa0283490:exon |
| AATTTCAACTTTAACAACCA+TGG | 0.540733 | 2_3:+20718577 | Msa0283490:exon |
| AGTATATAAGTATAGGATTG+AGG | 0.543177 | 2_3:+20727235 | Msa0283490:three_prime_UTR |
| CTAAGAACATTGTCTCTGAA+AGG | 0.544041 | 2_3:+20718855 | Msa0283490:CDS |
| GAGCTTGACATGTAACAAAA+GGG | 0.547151 | 2_3:+20721285 | Msa0283490:CDS |
| CTTTCCAATTGAAGTCCTTG+AGG | 0.548914 | 2_3:+20719936 | Msa0283490:CDS |
| TAATAATTTGAAAATTGAGT+AGG | 0.560330 | 2_3:-20727309 | None:intergenic |
| TGATGATGCTGCACCATCTG+GGG | 0.561453 | 2_3:-20718822 | None:intergenic |
| TTCTTGGACCTTAGCAACAC+AGG | 0.566724 | 2_3:-20719871 | None:intergenic |
| AGGGTCATTAAGAGCTGCAA+TGG | 0.567337 | 2_3:-20726969 | None:intergenic |
| CTCATCACCAATGTTCTCCA+TGG | 0.572679 | 2_3:-20718594 | None:intergenic |
| ATCCTATACTTATATACTAG+TGG | 0.576611 | 2_3:-20727230 | None:intergenic |
| AGATGCTCATAGGGCTTAGA+GGG | 0.580755 | 2_3:-20726988 | None:intergenic |
| TGATGAGTACAAGCTTTACT+GGG | 0.584970 | 2_3:+20718610 | Msa0283490:CDS |
| TTTGAAGACAGTCTTCATTG+AGG | 0.586246 | 2_3:+20721396 | Msa0283490:CDS |
| TTTATATATACATATAGTGA+TGG | 0.588578 | 2_3:-20718465 | None:intergenic |
| TTAACAACCATGGAGAACAT+TGG | 0.592898 | 2_3:+20718587 | Msa0283490:exon |
| TTGTCTCTGAAAGGAATAGG+AGG | 0.600641 | 2_3:+20718864 | Msa0283490:CDS |
| AGATAATGGAACTTGAATCT+GGG | 0.607917 | 2_3:+20719803 | Msa0283490:CDS |
| TAACAAAAGGGCAGACACAA+TGG | 0.621554 | 2_3:+20721297 | Msa0283490:CDS |
| ACTCTTTGCACTTAGAGCAG+TGG | 0.626022 | 2_3:+20718904 | Msa0283490:CDS |
| TATGATTCAAGCTCCCCAGA+TGG | 0.634637 | 2_3:+20718809 | Msa0283490:CDS |
| CAGCTTAGGGTTACATACAT+GGG | 0.636587 | 2_3:+20721244 | Msa0283490:intron |
| CTATGAAAATACGAAAGCCA+CGG | 0.657789 | 2_3:-20727260 | None:intergenic |
| AGTGGTCCCAAACATTAGCA+AGG | 0.661525 | 2_3:+20718922 | Msa0283490:CDS |
| TGATTGAAAGAAATTTAAGG+TGG | 0.679867 | 2_3:-20718520 | None:intergenic |
| AGTATAGGATTGAGGAACCG+TGG | 0.680536 | 2_3:+20727243 | Msa0283490:three_prime_UTR |
| ATACATGGGAGAGAATACAA+TGG | 0.777577 | 2_3:+20721258 | Msa0283490:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTTTTTTTTTTTTTTT+GGG | - | chr2_3:20724908-20724927 | None:intergenic | 0.0% |
| !!! | TTTTTTTTTTTTTTTTTTTT+TGG | - | chr2_3:20724908-20724927 | None:intergenic | 0.0% |
| !! | TACTAAATATATGTTATAAA+TGG | - | chr2_3:20719399-20719418 | None:intergenic | 10.0% |
| !! | TAATTTGGATTAATATTATT+AGG | - | chr2_3:20719832-20719851 | None:intergenic | 10.0% |
| !! | TGTATATAATATTAATTGAA+GGG | + | chr2_3:20720308-20720327 | Msa0283490:intron | 10.0% |
| !! | AATCAAATCAATATTTATAT+TGG | - | chr2_3:20720726-20720745 | None:intergenic | 10.0% |
| !!! | TTTTATTTTAATTTTTTGAC+AGG | - | chr2_3:20720800-20720819 | None:intergenic | 10.0% |
| !! | TATAATCTATATTTATTGTT+GGG | - | chr2_3:20721080-20721099 | None:intergenic | 10.0% |
| !!! | TTTTTGTTTTATATTATTTG+AGG | - | chr2_3:20721562-20721581 | None:intergenic | 10.0% |
| !! | TCAATGTAAATTATATTTAA+AGG | + | chr2_3:20721630-20721649 | Msa0283490:intron | 10.0% |
| !!! | ACAATTTTTTAAATATTGTT+TGG | - | chr2_3:20721725-20721744 | None:intergenic | 10.0% |
| !! | TATATATATTAAACATGAAT+AGG | - | chr2_3:20722295-20722314 | None:intergenic | 10.0% |
| !! | TTATTAAATTATTGTTTACT+TGG | - | chr2_3:20723138-20723157 | None:intergenic | 10.0% |
| !! | TTTCTTATATTAAGATTAAA+TGG | - | chr2_3:20724719-20724738 | None:intergenic | 10.0% |
| !!! | TTTTATTTAACTAAAAAGTA+CGG | - | chr2_3:20726552-20726571 | None:intergenic | 10.0% |
| !!! | CATTTTTTTAATTCAAAATT+AGG | + | chr2_3:20726789-20726808 | Msa0283490:intron | 10.0% |
| !! | TTTATATATACATATAGTGA+TGG | - | chr2_3:20718468-20718487 | None:intergenic | 15.0% |
| !!! | AATTAATTTACTTTTGTACT+TGG | - | chr2_3:20719088-20719107 | None:intergenic | 15.0% |
| !! | AGTACAAAAGTAAATTAATT+TGG | + | chr2_3:20719088-20719107 | Msa0283490:intron | 15.0% |
| !! | AAACAATACATGTATATATA+CGG | - | chr2_3:20719126-20719145 | None:intergenic | 15.0% |
| !!! | TTTTTTAAACATTTTGTTAG+AGG | + | chr2_3:20719209-20719228 | Msa0283490:intron | 15.0% |
| !! | AATAGTTGATTAGAATAATT+CGG | - | chr2_3:20720246-20720265 | None:intergenic | 15.0% |
| !! | GTGTATATAATATTAATTGA+AGG | + | chr2_3:20720307-20720326 | Msa0283490:intron | 15.0% |
| !! | ATAATCTATATTTATTGTTG+GGG | - | chr2_3:20721079-20721098 | None:intergenic | 15.0% |
| !! | CTATAATCTATATTTATTGT+TGG | - | chr2_3:20721081-20721100 | None:intergenic | 15.0% |
| !! | AATAAAGAAAGTGAAATTAA+AGG | - | chr2_3:20721433-20721452 | None:intergenic | 15.0% |
| !! | TAACTAATTGAATTATGTTT+CGG | - | chr2_3:20721776-20721795 | None:intergenic | 15.0% |
| !!! | GATTTTTTTAAGTAATTTAG+TGG | - | chr2_3:20721935-20721954 | None:intergenic | 15.0% |
| !!! | TGAACACTTTTAAATAAAAA+AGG | + | chr2_3:20722165-20722184 | Msa0283490:intron | 15.0% |
| !! | AATTAAGTCAAGTAAAAAAT+AGG | + | chr2_3:20722385-20722404 | Msa0283490:intron | 15.0% |
| !! | ATTAAGTCAAGTAAAAAATA+GGG | + | chr2_3:20722386-20722405 | Msa0283490:intron | 15.0% |
| !! | TTAAATGAAAGAGTTAAAAA+AGG | + | chr2_3:20722431-20722450 | Msa0283490:intron | 15.0% |
| !! | TAAATGAAAGAGTTAAAAAA+GGG | + | chr2_3:20722432-20722451 | Msa0283490:intron | 15.0% |
| !! | AATATAAGAATAATTGACAA+AGG | + | chr2_3:20722965-20722984 | Msa0283490:intron | 15.0% |
| !! | ATATAAGAATAATTGACAAA+GGG | + | chr2_3:20722966-20722985 | Msa0283490:intron | 15.0% |
| !!! | GTTACCTTATTTATTTATTT+CGG | + | chr2_3:20723455-20723474 | Msa0283490:intron | 15.0% |
| !!! | ATATCTTTTTAATAGTTGAT+CGG | - | chr2_3:20723796-20723815 | None:intergenic | 15.0% |
| !! | ATCAACTATTAAAAAGATAT+GGG | + | chr2_3:20723796-20723815 | Msa0283490:intron | 15.0% |
| !!! | TAAAAAAAAGTTACTTGTTT+TGG | + | chr2_3:20724239-20724258 | Msa0283490:intron | 15.0% |
| !! | AATATGTAAATTAATGTACT+TGG | - | chr2_3:20724580-20724599 | None:intergenic | 15.0% |
| !! | TATTTAGTACTAGTAAATAT+AGG | - | chr2_3:20724694-20724713 | None:intergenic | 15.0% |
| !!! | AAGAAACAATTTTTTTTATG+TGG | + | chr2_3:20724733-20724752 | Msa0283490:intron | 15.0% |
| !!! | TTTTTTTTTTTTTTGGGATA+AGG | - | chr2_3:20724902-20724921 | None:intergenic | 15.0% |
| !! | ACTATAAAAATTTAACTCAT+GGG | - | chr2_3:20725173-20725192 | None:intergenic | 15.0% |
| !! | TACTATAAAAATTTAACTCA+TGG | - | chr2_3:20725174-20725193 | None:intergenic | 15.0% |
| !! | AATACGGAAAAAATTATATA+TGG | - | chr2_3:20725319-20725338 | None:intergenic | 15.0% |
| !! | TATAAAATAGATGAGAAATA+CGG | - | chr2_3:20725335-20725354 | None:intergenic | 15.0% |
| !!! | TATTTTCCTATTTTGTTAAA+AGG | - | chr2_3:20725394-20725413 | None:intergenic | 15.0% |
| !!! | ATAAGTCTTTAATTTAATGT+TGG | - | chr2_3:20725433-20725452 | None:intergenic | 15.0% |
| !! | AAAATCTCTATTAATTGATT+TGG | - | chr2_3:20725461-20725480 | None:intergenic | 15.0% |
| !! | AATTCAATATAAAATCATGT+TGG | + | chr2_3:20725491-20725510 | Msa0283490:intron | 15.0% |
| !!! | AACTAATAAATACTTTTTCA+GGG | - | chr2_3:20725709-20725728 | None:intergenic | 15.0% |
| !! | AACATGCATTATTATATATA+GGG | + | chr2_3:20725964-20725983 | Msa0283490:intron | 15.0% |
| !! | CTCATTTAAATAGTAAAATA+TGG | - | chr2_3:20726075-20726094 | None:intergenic | 15.0% |
| !!! | TTATTTTTAAAATGTTGTGT+TGG | - | chr2_3:20726167-20726186 | None:intergenic | 15.0% |
| !! | ATAAGTATTATAACTTATCA+TGG | + | chr2_3:20726605-20726624 | Msa0283490:intron | 15.0% |
| !!! | TAATGAGGTATTATTTTTTA+GGG | - | chr2_3:20726674-20726693 | None:intergenic | 15.0% |
| !!! | ATAATGAGGTATTATTTTTT+AGG | - | chr2_3:20726675-20726694 | None:intergenic | 15.0% |
| !! | AGAAAATAAAATAAAATGAG+AGG | + | chr2_3:20726846-20726865 | Msa0283490:intron | 15.0% |
| !! | TAATAATTTGAAAATTGAGT+AGG | - | chr2_3:20727312-20727331 | None:intergenic | 15.0% |
| !!! | ACTCAATTTTCAAATTATTA+AGG | + | chr2_3:20727312-20727331 | Msa0283490:three_prime_UTR | 15.0% |
| !! | TGATGATTGAAAGAAATTTA+AGG | - | chr2_3:20718526-20718545 | None:intergenic | 20.0% |
| !!! | ATCTTGATAATTGAGATATA+TGG | + | chr2_3:20718743-20718762 | Msa0283490:intron | 20.0% |
| !!! | TTTGTTTTGTTTGAATTAAG+TGG | + | chr2_3:20719032-20719051 | Msa0283490:intron | 20.0% |
| !! | ATAATTACTATACCATATGA+TGG | - | chr2_3:20719638-20719657 | None:intergenic | 20.0% |
| !! | CATATGGTATAGTAATTATT+TGG | + | chr2_3:20719639-20719658 | Msa0283490:intron | 20.0% |
| !! | TCTTGATCAAAATCATAATT+TGG | - | chr2_3:20719847-20719866 | None:intergenic | 20.0% |
| !! | AGAAAAAGTTATTATTGCAT+TGG | + | chr2_3:20720342-20720361 | Msa0283490:intron | 20.0% |
| !!! | CACTTTTAAGTATAAGAATT+AGG | - | chr2_3:20720451-20720470 | None:intergenic | 20.0% |
| !! | ACAAAAATAAGACATTGTAT+AGG | + | chr2_3:20720681-20720700 | Msa0283490:intron | 20.0% |
| !! | CAAAAATAAGACATTGTATA+GGG | + | chr2_3:20720682-20720701 | Msa0283490:intron | 20.0% |
| !!! | TGTCTATTTTATTAGAGAAA+TGG | - | chr2_3:20720853-20720872 | None:intergenic | 20.0% |
| !! | TCAGATAAAAAAAATAGTAG+TGG | + | chr2_3:20720874-20720893 | Msa0283490:intron | 20.0% |
| !! | CAGATAAAAAAAATAGTAGT+GGG | + | chr2_3:20720875-20720894 | Msa0283490:intron | 20.0% |
| !!! | CTAATATATTTTCTCTACTA+GGG | - | chr2_3:20720975-20720994 | None:intergenic | 20.0% |
| !! | GAACATGAACATAAAAAATT+AGG | - | chr2_3:20720998-20721017 | None:intergenic | 20.0% |
| !! | TAATCTATATTTATTGTTGG+GGG | - | chr2_3:20721078-20721097 | None:intergenic | 20.0% |
| !! | TGATGCTAAAAAAATAAATG+TGG | + | chr2_3:20721137-20721156 | Msa0283490:intron | 20.0% |
| !! | GATGCTAAAAAAATAAATGT+GGG | + | chr2_3:20721138-20721157 | Msa0283490:intron | 20.0% |
| !! | ATGCTAAAAAAATAAATGTG+GGG | + | chr2_3:20721139-20721158 | Msa0283490:intron | 20.0% |
| !!! | TCCTATTTAATTTGCTTTAT+AGG | + | chr2_3:20721506-20721525 | Msa0283490:intron | 20.0% |
| !! | ACCTATAAAGCAAATTAAAT+AGG | - | chr2_3:20721510-20721529 | None:intergenic | 20.0% |
| !!! | ACATTTTAAGATGAATAAGT+GGG | - | chr2_3:20721678-20721697 | None:intergenic | 20.0% |
| !! | AACTAATTGAATTATGTTTC+GGG | - | chr2_3:20721775-20721794 | None:intergenic | 20.0% |
| !! | AAATATTGTTAGCTATTCAT+CGG | + | chr2_3:20721962-20721981 | Msa0283490:intron | 20.0% |
| !! | AAATAAAAAAGGCAATAATG+AGG | + | chr2_3:20722176-20722195 | Msa0283490:intron | 20.0% |
| !! | AATAAAAAAGGCAATAATGA+GGG | + | chr2_3:20722177-20722196 | Msa0283490:intron | 20.0% |
| !! | AGTAGTATAATACTCAAAAT+GGG | - | chr2_3:20722247-20722266 | None:intergenic | 20.0% |
| !! | AAGTAGTATAATACTCAAAA+TGG | - | chr2_3:20722248-20722267 | None:intergenic | 20.0% |
| !!! | TAGGAGTATAAAAAAAGAAT+AGG | - | chr2_3:20722276-20722295 | None:intergenic | 20.0% |
| !! | AAATGAAAGAGTTAAAAAAG+GGG | + | chr2_3:20722433-20722452 | Msa0283490:intron | 20.0% |
| !! | AAGCACAATATTTAGAAAAT+TGG | - | chr2_3:20722759-20722778 | None:intergenic | 20.0% |
| !!! | TATAGAATTTTAACTCTTCA+TGG | + | chr2_3:20722817-20722836 | Msa0283490:intron | 20.0% |
| !! | ACTAATTAGTGCTATATATT+TGG | - | chr2_3:20722935-20722954 | None:intergenic | 20.0% |
| !! | TATGCCGAAATAAATAAATA+AGG | - | chr2_3:20723462-20723481 | None:intergenic | 20.0% |
| !! | AAAAAAAAAATTAAACCACG+CGG | - | chr2_3:20723499-20723518 | None:intergenic | 20.0% |
| !! | GATCAACTATTAAAAAGATA+TGG | + | chr2_3:20723795-20723814 | Msa0283490:intron | 20.0% |
| !! | AGACTCATTTATAAATACTT+CGG | - | chr2_3:20724111-20724130 | None:intergenic | 20.0% |
| !! | TCAGTAACTCTATATATTTA+TGG | + | chr2_3:20724838-20724857 | Msa0283490:intron | 20.0% |
| !! | CAGTAACTCTATATATTTAT+GGG | + | chr2_3:20724839-20724858 | Msa0283490:intron | 20.0% |
| !!! | ATATTTTAAATTGTTCCTCA+TGG | - | chr2_3:20724872-20724891 | None:intergenic | 20.0% |
| !!! | ATTTCACACTCTTTAAAAAT+AGG | - | chr2_3:20724975-20724994 | None:intergenic | 20.0% |
| !! | GAAAAAATTATATATGGACA+AGG | - | chr2_3:20725313-20725332 | None:intergenic | 20.0% |
| !! | TACAGTATAATATTATCACA+TGG | - | chr2_3:20725367-20725386 | None:intergenic | 20.0% |
| !!! | TACTTTCCTTTTAACAAAAT+AGG | + | chr2_3:20725385-20725404 | Msa0283490:intron | 20.0% |
| !! | AGAAACAAAAAATATGAATG+TGG | - | chr2_3:20725583-20725602 | None:intergenic | 20.0% |
| !!! | CAACTAATAAATACTTTTTC+AGG | - | chr2_3:20725710-20725729 | None:intergenic | 20.0% |
| !!! | AAATTAACCTTATTTAGTGT+TGG | + | chr2_3:20725809-20725828 | Msa0283490:intron | 20.0% |
| !! | GAACATGCATTATTATATAT+AGG | + | chr2_3:20725963-20725982 | Msa0283490:intron | 20.0% |
| !! | CTCAATTGAAAAGAATAAAA+AGG | - | chr2_3:20726250-20726269 | None:intergenic | 20.0% |
| !!! | CTTTTTATTCTTTTCAATTG+AGG | + | chr2_3:20726248-20726267 | Msa0283490:intron | 20.0% |
| !! | AGAAATTTACTTATTACTAG+TGG | + | chr2_3:20726340-20726359 | Msa0283490:intron | 20.0% |
| !! | ATTATAACTTATCATGGATA+TGG | + | chr2_3:20726611-20726630 | Msa0283490:intron | 20.0% |
| !!! | AATGAGGTATTATTTTTTAG+GGG | - | chr2_3:20726673-20726692 | None:intergenic | 20.0% |
| !! | TATTACAATGACAAATAATG+AGG | - | chr2_3:20726689-20726708 | None:intergenic | 20.0% |
| !!! | TTTTAATTCAAAATTAGGGA+AGG | + | chr2_3:20726794-20726813 | Msa0283490:intron | 20.0% |
| !! | TTTAATTCAAAATTAGGGAA+GGG | + | chr2_3:20726795-20726814 | Msa0283490:intron | 20.0% |
| !!! | GTTTTATCCTTTTTATTTTC+AGG | + | chr2_3:20726901-20726920 | Msa0283490:intron | 20.0% |
| ! | TGATTGAAAGAAATTTAAGG+TGG | - | chr2_3:20718523-20718542 | None:intergenic | 25.0% |
| ! | GTTGTTAAAGTTGAAATTGA+AGG | - | chr2_3:20718575-20718594 | None:intergenic | 25.0% |
| ! | AATTTCAACTTTAACAACCA+TGG | + | chr2_3:20718577-20718596 | Msa0283490:exon | 25.0% |
| ! | ATAATTGAGATATATGGTTG+TGG | + | chr2_3:20718749-20718768 | Msa0283490:intron | 25.0% |
| !! | GTAAACATCACTAATTTTAG+CGG | + | chr2_3:20718944-20718963 | Msa0283490:intron | 25.0% |
| ! | AATTAGTACTACTCAATTTC+TGG | + | chr2_3:20718987-20719006 | Msa0283490:intron | 25.0% |
| ! | ATTAGTACTACTCAATTTCT+GGG | + | chr2_3:20718988-20719007 | Msa0283490:intron | 25.0% |
| ! | TTTGTTTGAATTAAGTGGTT+TGG | + | chr2_3:20719037-20719056 | Msa0283490:intron | 25.0% |
| ! | TTGTTTGAATTAAGTGGTTT+GGG | + | chr2_3:20719038-20719057 | Msa0283490:intron | 25.0% |
| !!! | TGTATTTTAGGATTTAAGTC+GGG | - | chr2_3:20719250-20719269 | None:intergenic | 25.0% |
| !!! | CTGTATTTTAGGATTTAAGT+CGG | - | chr2_3:20719251-20719270 | None:intergenic | 25.0% |
| !! | CGATAGATTTTGTCTATTTT+GGG | - | chr2_3:20719322-20719341 | None:intergenic | 25.0% |
| !! | TCGATAGATTTTGTCTATTT+TGG | - | chr2_3:20719323-20719342 | None:intergenic | 25.0% |
| ! | CGATATAGGAAATTGTAAAA+TGG | - | chr2_3:20719458-20719477 | None:intergenic | 25.0% |
| ! | AATTTCTTTCTAATGATGAG+TGG | + | chr2_3:20719682-20719701 | Msa0283490:intron | 25.0% |
| ! | GGATAAAGCTTCAATTATTA+AGG | + | chr2_3:20719726-20719745 | Msa0283490:CDS | 25.0% |
| !!! | AAACAACGTTCATTTTGAAA+CGG | - | chr2_3:20720164-20720183 | None:intergenic | 25.0% |
| ! | TTCAAAATGAACGTTGTTTA+AGG | + | chr2_3:20720165-20720184 | Msa0283490:intron | 25.0% |
| ! | TTAAGGTGGTGATTTATAAT+TGG | - | chr2_3:20720922-20720941 | None:intergenic | 25.0% |
| ! | TATAAATCACCACCTTAATA+AGG | + | chr2_3:20720924-20720943 | Msa0283490:intron | 25.0% |
| ! | ATAAATCACCACCTTAATAA+GGG | + | chr2_3:20720925-20720944 | Msa0283490:intron | 25.0% |
| !! | GCTAATATATTTTCTCTACT+AGG | - | chr2_3:20720976-20720995 | None:intergenic | 25.0% |
| ! | GGTCATTAACAAAAAAATAG+TGG | - | chr2_3:20721053-20721072 | None:intergenic | 25.0% |
| ! | AGATTATAGAAGAGATTGTA+AGG | + | chr2_3:20721092-20721111 | Msa0283490:intron | 25.0% |
| ! | TGAGTGTGTAATTTGATATA+TGG | + | chr2_3:20721214-20721233 | Msa0283490:intron | 25.0% |
| ! | TGTTAACTTAGCTATGTTTA+CGG | - | chr2_3:20721607-20721626 | None:intergenic | 25.0% |
| !!! | CATTTTAAGATGAATAAGTG+GGG | - | chr2_3:20721677-20721696 | None:intergenic | 25.0% |
| !!! | CACATTTTAAGATGAATAAG+TGG | - | chr2_3:20721679-20721698 | None:intergenic | 25.0% |
| !!! | GTTAAAATTCACTTTTTTCG+AGG | - | chr2_3:20721913-20721932 | None:intergenic | 25.0% |
| ! | AAGATATTACAGCTAGAATA+AGG | + | chr2_3:20722062-20722081 | Msa0283490:intron | 25.0% |
| ! | AGATATTACAGCTAGAATAA+GGG | + | chr2_3:20722063-20722082 | Msa0283490:intron | 25.0% |
| ! | AAGTGTTCATTGTTCAATTA+TGG | - | chr2_3:20722154-20722173 | None:intergenic | 25.0% |
| ! | TTAAAAAAGGGGAGAAATAA+GGG | + | chr2_3:20722444-20722463 | Msa0283490:intron | 25.0% |
| ! | TAGTTGTTAACATTTGATGA+AGG | - | chr2_3:20722491-20722510 | None:intergenic | 25.0% |
| !!! | TTCTAAAACGACACTTAAAA+AGG | - | chr2_3:20722525-20722544 | None:intergenic | 25.0% |
| !! | GATTAAAATGAGGGTATAAT+AGG | - | chr2_3:20722591-20722610 | None:intergenic | 25.0% |
| ! | AAAAAATAGGAAATTATCCG+TGG | - | chr2_3:20722613-20722632 | None:intergenic | 25.0% |
| ! | TAAAGTGTGTGCAAAAAAAT+AGG | - | chr2_3:20722626-20722645 | None:intergenic | 25.0% |
| ! | ACAAAAAAATCCGAATTTGT+TGG | - | chr2_3:20722704-20722723 | None:intergenic | 25.0% |
| ! | TAAATATTGTGCTTATCTCT+TGG | + | chr2_3:20722765-20722784 | Msa0283490:intron | 25.0% |
| ! | TATTGTTTACTTGGTATTTC+AGG | - | chr2_3:20723129-20723148 | None:intergenic | 25.0% |
| !! | GAAACACGTTTTCAAATTAT+TGG | - | chr2_3:20723425-20723444 | None:intergenic | 25.0% |
| !! | TTTTCTTCTTCGTCTAATAA+TGG | + | chr2_3:20723534-20723553 | Msa0283490:intron | 25.0% |
| !! | CATGCTATAATTTGCAAAAT+GGG | + | chr2_3:20723585-20723604 | Msa0283490:intron | 25.0% |
| !!! | AGTTTAAGTTAGTAGTGTTT+TGG | + | chr2_3:20723706-20723725 | Msa0283490:intron | 25.0% |
| !!! | GTTTAAGTTAGTAGTGTTTT+GGG | + | chr2_3:20723707-20723726 | Msa0283490:intron | 25.0% |
| !!! | TTTAAGTTAGTAGTGTTTTG+GGG | + | chr2_3:20723708-20723727 | Msa0283490:intron | 25.0% |
| !! | TGTCAAGATGAATATCTTTT+GGG | - | chr2_3:20724000-20724019 | None:intergenic | 25.0% |
| ! | CATTTGATAAAAAAAGCTGA+AGG | - | chr2_3:20724349-20724368 | None:intergenic | 25.0% |
| ! | AGAATAATCAATTTCAATGG+TGG | - | chr2_3:20724485-20724504 | None:intergenic | 25.0% |
| ! | ACCATTGAAATTGATTATTC+TGG | + | chr2_3:20724484-20724503 | Msa0283490:intron | 25.0% |
| ! | ACCAGAATAATCAATTTCAA+TGG | - | chr2_3:20724488-20724507 | None:intergenic | 25.0% |
| ! | AGTATAATATTATCACATGG+TGG | - | chr2_3:20725364-20725383 | None:intergenic | 25.0% |
| !! | TCTTTAATTTAATGTTGGTG+TGG | - | chr2_3:20725428-20725447 | None:intergenic | 25.0% |
| !! | TGTCCAATTTTATATTTCTC+AGG | + | chr2_3:20725605-20725624 | Msa0283490:intron | 25.0% |
| ! | TGCATTATTATATATAGGGT+TGG | + | chr2_3:20725968-20725987 | Msa0283490:intron | 25.0% |
| ! | GCATTATTATATATAGGGTT+GGG | + | chr2_3:20725969-20725988 | Msa0283490:intron | 25.0% |
| ! | CATTATTATATATAGGGTTG+GGG | + | chr2_3:20725970-20725989 | Msa0283490:intron | 25.0% |
| !!! | TTTTTCAAGGTGAATAACTA+GGG | - | chr2_3:20726011-20726030 | None:intergenic | 25.0% |
| !!! | TTTTTTTGTCAAGTAGTCTA+GGG | - | chr2_3:20726047-20726066 | None:intergenic | 25.0% |
| !!! | TTTTTTTTGTCAAGTAGTCT+AGG | - | chr2_3:20726048-20726067 | None:intergenic | 25.0% |
| !! | TTTACTAAACCTTCTCTTTT+GGG | - | chr2_3:20726205-20726224 | None:intergenic | 25.0% |
| !! | TTTTACTAAACCTTCTCTTT+TGG | - | chr2_3:20726206-20726225 | None:intergenic | 25.0% |
| !! | TTTCAATTGAGGTATCTATT+TGG | + | chr2_3:20726259-20726278 | Msa0283490:intron | 25.0% |
| ! | TTATGACAAATCATTACTGA+AGG | + | chr2_3:20726494-20726513 | Msa0283490:intron | 25.0% |
| ! | TTAATTCAAAATTAGGGAAG+GGG | + | chr2_3:20726796-20726815 | Msa0283490:intron | 25.0% |
| ! | TCATTTGCCTGAAAATAAAA+AGG | - | chr2_3:20726911-20726930 | None:intergenic | 25.0% |
| !!! | TTTTTATTTTCAGGCAAATG+AGG | + | chr2_3:20726910-20726929 | Msa0283490:intron | 25.0% |
| !! | ACGGAATGAACAATTTTAAA+AGG | - | chr2_3:20727038-20727057 | None:intergenic | 25.0% |
| ! | CTATAAATAAGCACTTCATT+AGG | - | chr2_3:20727196-20727215 | None:intergenic | 25.0% |
| ! | ATCCTATACTTATATACTAG+TGG | - | chr2_3:20727233-20727252 | None:intergenic | 25.0% |
| ! | AGTATATAAGTATAGGATTG+AGG | + | chr2_3:20727235-20727254 | Msa0283490:three_prime_UTR | 25.0% |
| !! | TTTAAGGTGGTTGGTTTATT+TGG | - | chr2_3:20718510-20718529 | None:intergenic | 30.0% |
| ! | TGAAAGAAATTTAAGGTGGT+TGG | - | chr2_3:20718519-20718538 | None:intergenic | 30.0% |
| TCACTTTGATTCAAGTATGA+AGG | + | chr2_3:20718688-20718707 | Msa0283490:intron | 30.0% | |
| TGTTTACCTTGCTAATGTTT+GGG | - | chr2_3:20718931-20718950 | None:intergenic | 30.0% | |
| ATGTTTACCTTGCTAATGTT+TGG | - | chr2_3:20718932-20718951 | None:intergenic | 30.0% | |
| CGACTTAAATCCTAAAATAC+AGG | + | chr2_3:20719249-20719268 | Msa0283490:intron | 30.0% | |
| AAAATGGCAATCAAAATCGA+TGG | - | chr2_3:20719442-20719461 | None:intergenic | 30.0% | |
| ! | GACTTTTGTAGAATCGATAT+AGG | - | chr2_3:20719472-20719491 | None:intergenic | 30.0% |
| ! | AAATCGAAGGATTTTACTCA+AGG | - | chr2_3:20719494-20719513 | None:intergenic | 30.0% |
| AAAATCGCAATCAAAATCGA+AGG | - | chr2_3:20719339-20719358 | None:intergenic | 30.0% | |
| TTGATGTCTTTGACATCTAA+TGG | + | chr2_3:20719602-20719621 | Msa0283490:intron | 30.0% | |
| GGAAAATATCAACCATCATA+TGG | + | chr2_3:20719623-20719642 | Msa0283490:intron | 30.0% | |
| !!! | TAGTGACTTTTTTTTCCAGA+TGG | + | chr2_3:20719705-20719724 | Msa0283490:intron | 30.0% |
| ! | TAATTGAAGCTTTATCCATC+TGG | - | chr2_3:20719723-20719742 | None:intergenic | 30.0% |
| GATTATTCAAGCTGAGATAA+TGG | + | chr2_3:20719789-20719808 | Msa0283490:CDS | 30.0% | |
| !! | AGATAATGGAACTTGAATCT+GGG | + | chr2_3:20719803-20719822 | Msa0283490:CDS | 30.0% |
| !!! | GACACTCATTTTAAAACAGA+GGG | + | chr2_3:20720412-20720431 | Msa0283490:intron | 30.0% |
| AACAATGAAGTGTGAATCTA+AGG | - | chr2_3:20720488-20720507 | None:intergenic | 30.0% | |
| !! | TTCTGAAGTTTGATGATAAG+AGG | - | chr2_3:20720620-20720639 | None:intergenic | 30.0% |
| ! | TTTATAATTGGTTCTCAGCA+TGG | - | chr2_3:20720910-20720929 | None:intergenic | 30.0% |
| !! | AGTCTGATTTGGTATTTGAT+AGG | - | chr2_3:20721027-20721046 | None:intergenic | 30.0% |
| !! | AATAGTGGATAAGTCTGATT+TGG | - | chr2_3:20721038-20721057 | None:intergenic | 30.0% |
| GTTAACTTAGCTATGTTTAC+GGG | - | chr2_3:20721606-20721625 | None:intergenic | 30.0% | |
| AGACATGCATTGTTATATGT+AGG | + | chr2_3:20721851-20721870 | Msa0283490:intron | 30.0% | |
| GACATGCATTGTTATATGTA+GGG | + | chr2_3:20721852-20721871 | Msa0283490:intron | 30.0% | |
| ACATGCATTGTTATATGTAG+GGG | + | chr2_3:20721853-20721872 | Msa0283490:intron | 30.0% | |
| GTAAATAAGTAGAGTGTATG+AGG | - | chr2_3:20721891-20721910 | None:intergenic | 30.0% | |
| GATATTACAGCTAGAATAAG+GGG | + | chr2_3:20722064-20722083 | Msa0283490:intron | 30.0% | |
| ATATTACAGCTAGAATAAGG+GGG | + | chr2_3:20722065-20722084 | Msa0283490:intron | 30.0% | |
| !! | CTTTTCCACTTTTGTAAAAG+TGG | - | chr2_3:20722123-20722142 | None:intergenic | 30.0% |
| ! | CTTTTACAAAAGTGGAAAAG+TGG | + | chr2_3:20722123-20722142 | Msa0283490:intron | 30.0% |
| AAGTCAAGTAAAAAATAGGG+AGG | + | chr2_3:20722389-20722408 | Msa0283490:intron | 30.0% | |
| AAAATAGGGAGGAATAAGAT+TGG | + | chr2_3:20722400-20722419 | Msa0283490:intron | 30.0% | |
| GTTAAAAAAGGGGAGAAATA+AGG | + | chr2_3:20722443-20722462 | Msa0283490:intron | 30.0% | |
| AAACGACACTTAAAAAGGAA+CGG | - | chr2_3:20723057-20723076 | None:intergenic | 30.0% | |
| !! | TATACCCTCATTTTAATCCA+CGG | + | chr2_3:20722593-20722612 | Msa0283490:intron | 30.0% |
| ! | TTATCCGTGGATTAAAATGA+GGG | - | chr2_3:20722600-20722619 | None:intergenic | 30.0% |
| ! | ATTATCCGTGGATTAAAATG+AGG | - | chr2_3:20722601-20722620 | None:intergenic | 30.0% |
| CTTCATGGAACTATTATCAT+AGG | + | chr2_3:20722832-20722851 | Msa0283490:intron | 30.0% | |
| !!! | GTGTCGTTTTGGTATTTTAA+GGG | - | chr2_3:20723010-20723029 | None:intergenic | 30.0% |
| !!! | AGTGTCGTTTTGGTATTTTA+AGG | - | chr2_3:20723011-20723030 | None:intergenic | 30.0% |
| !!! | CCTTTTTAAGTGTCGTTTTA+GGG | - | chr2_3:20722522-20722541 | None:intergenic | 30.0% |
| !!! | TCCTTTTTAAGTGTCGTTTT+AGG | - | chr2_3:20722521-20722540 | None:intergenic | 30.0% |
| AAACGACACTTAAAAAGGAA+CGG | + | chr2_3:20723057-20723076 | Msa0283490:intron | 30.0% | |
| CTTCAAAATAGAACTCCATT+AGG | + | chr2_3:20723199-20723218 | Msa0283490:intron | 30.0% | |
| GCAAAGTTTACAAAACCTAA+TGG | - | chr2_3:20723217-20723236 | None:intergenic | 30.0% | |
| TGAATCAAAGTAGAAAAGAG+TGG | + | chr2_3:20723321-20723340 | Msa0283490:intron | 30.0% | |
| CACTAGTGATACATGAATTA+GGG | + | chr2_3:20723367-20723386 | Msa0283490:intron | 30.0% | |
| TCTAATAATGGCAAAATGTC+AGG | + | chr2_3:20723546-20723565 | Msa0283490:intron | 30.0% | |
| ! | GCATGCTATAATTTGCAAAA+TGG | + | chr2_3:20723584-20723603 | Msa0283490:intron | 30.0% |
| ! | CTGTCAAGATGAATATCTTT+TGG | - | chr2_3:20724001-20724020 | None:intergenic | 30.0% |
| CTTGTTAATAAGTGTTCTCT+AGG | + | chr2_3:20724129-20724148 | Msa0283490:intron | 30.0% | |
| ! | TGTTCTCTAGGAAATTGTTA+AGG | + | chr2_3:20724141-20724160 | Msa0283490:intron | 30.0% |
| CAACATGTGTTAATGAATGT+TGG | - | chr2_3:20724378-20724397 | None:intergenic | 30.0% | |
| !! | TTGATTTGCTACTGTATCTA+AGG | - | chr2_3:20725020-20725039 | None:intergenic | 30.0% |
| GCACCTGAGAAATATAAAAT+TGG | - | chr2_3:20725611-20725630 | None:intergenic | 30.0% | |
| GAATACACCAACACTAAATA+AGG | - | chr2_3:20725819-20725838 | None:intergenic | 30.0% | |
| CAAAATATGAAGTTCTATCG+TGG | - | chr2_3:20725916-20725935 | None:intergenic | 30.0% | |
| !!! | CTTTTTCAAGGTGAATAACT+AGG | - | chr2_3:20726012-20726031 | None:intergenic | 30.0% |
| CTAGTTATTCACCTTGAAAA+AGG | + | chr2_3:20726010-20726029 | Msa0283490:intron | 30.0% | |
| !! | GTTAGAATTCACCTTTTTCA+AGG | - | chr2_3:20726024-20726043 | None:intergenic | 30.0% |
| !!! | TTTTTTGTCAAGTAGTCTAG+GGG | - | chr2_3:20726046-20726065 | None:intergenic | 30.0% |
| TAAATTAGTCCCAAAAGAGA+AGG | + | chr2_3:20726193-20726212 | Msa0283490:intron | 30.0% | |
| !! | TATTTGGTTCAAGGATTTTG+AGG | + | chr2_3:20726275-20726294 | Msa0283490:intron | 30.0% |
| !! | TCAGTAATGGATATTACTGA+GGG | + | chr2_3:20726399-20726418 | Msa0283490:intron | 30.0% |
| ATTATTCCCTCAGTAATTAC+TGG | + | chr2_3:20726517-20726536 | Msa0283490:intron | 30.0% | |
| TTATTCCCTCAGTAATTACT+GGG | + | chr2_3:20726518-20726537 | Msa0283490:intron | 30.0% | |
| ! | AAAATATATCTAGCTTGACG+TGG | + | chr2_3:20726752-20726771 | Msa0283490:intron | 30.0% |
| TAATTCAAAATTAGGGAAGG+GGG | + | chr2_3:20726797-20726816 | Msa0283490:intron | 30.0% | |
| AGCCACTAGTATATAAGTAT+AGG | + | chr2_3:20727228-20727247 | Msa0283490:three_prime_UTR | 30.0% | |
| TTAACAACCATGGAGAACAT+TGG | + | chr2_3:20718587-20718606 | Msa0283490:exon | 35.0% | |
| TGATGAGTACAAGCTTTACT+GGG | + | chr2_3:20718610-20718629 | Msa0283490:CDS | 35.0% | |
| TTGTTACCTATCAAGCTCTT+GGG | - | chr2_3:20718657-20718676 | None:intergenic | 35.0% | |
| ATTGTTACCTATCAAGCTCT+TGG | - | chr2_3:20718658-20718677 | None:intergenic | 35.0% | |
| CTAAGAACATTGTCTCTGAA+AGG | + | chr2_3:20718855-20718874 | Msa0283490:CDS | 35.0% | |
| ! | ACATTGTCTCTGAAAGGAAT+AGG | + | chr2_3:20718861-20718880 | Msa0283490:CDS | 35.0% |
| ! | GTCGCAAAATCCTGTATTTT+AGG | - | chr2_3:20719262-20719281 | None:intergenic | 35.0% |
| TCGAAAGGGAATAGCAAAAT+CGG | - | chr2_3:20719537-20719556 | None:intergenic | 35.0% | |
| TAACCTAGGTTGTCAAAATC+GGG | - | chr2_3:20719573-20719592 | None:intergenic | 35.0% | |
| CTAACCTAGGTTGTCAAAAT+CGG | - | chr2_3:20719574-20719593 | None:intergenic | 35.0% | |
| !! | GAGATAATGGAACTTGAATC+TGG | + | chr2_3:20719802-20719821 | Msa0283490:CDS | 35.0% |
| TTTACCTCAAGGACTTCAAT+TGG | - | chr2_3:20719943-20719962 | None:intergenic | 35.0% | |
| TTGAAGTCCTTGAGGTAAAT+TGG | + | chr2_3:20719944-20719963 | Msa0283490:intron | 35.0% | |
| !!! | AACGTTCATTTTGAAACGGA+GGG | - | chr2_3:20720160-20720179 | None:intergenic | 35.0% |
| !!! | CGACACTCATTTTAAAACAG+AGG | + | chr2_3:20720411-20720430 | Msa0283490:intron | 35.0% |
| CTATATTTATTGTTGGGGGT+TGG | - | chr2_3:20721074-20721093 | None:intergenic | 35.0% | |
| GCATCAATAATACAAGAGAG+AGG | - | chr2_3:20721123-20721142 | None:intergenic | 35.0% | |
| ATACATGGGAGAGAATACAA+TGG | + | chr2_3:20721258-20721277 | Msa0283490:CDS | 35.0% | |
| TGAGCTTGACATGTAACAAA+AGG | + | chr2_3:20721284-20721303 | Msa0283490:CDS | 35.0% | |
| GAGCTTGACATGTAACAAAA+GGG | + | chr2_3:20721285-20721304 | Msa0283490:CDS | 35.0% | |
| TTTGAAGACAGTCTTCATTG+AGG | + | chr2_3:20721396-20721415 | Msa0283490:CDS | 35.0% | |
| GGAAGAAGAAAATGAACGTT+TGG | - | chr2_3:20721541-20721560 | None:intergenic | 35.0% | |
| !!! | CTATTGATTTTGAAGCATGG+AGG | - | chr2_3:20722091-20722110 | None:intergenic | 35.0% |
| !!! | GGTCTATTGATTTTGAAGCA+TGG | - | chr2_3:20722094-20722113 | None:intergenic | 35.0% |
| ! | ACTTTTGTAAAAGTGGTGAG+CGG | - | chr2_3:20722116-20722135 | None:intergenic | 35.0% |
| CTCTCTTTCTCCAACAAATT+CGG | + | chr2_3:20722691-20722710 | Msa0283490:intron | 35.0% | |
| TACCAAAACGACACTTGAAT+AGG | + | chr2_3:20723016-20723035 | Msa0283490:intron | 35.0% | |
| !!! | TTCCTATTCAAGTGTCGTTT+TGG | - | chr2_3:20723021-20723040 | None:intergenic | 35.0% |
| CCCTAAAACGACACTTAAAA+AGG | + | chr2_3:20723052-20723071 | Msa0283490:intron | 35.0% | |
| !! | TTAGGGAGAGTGTATTCTTT+TGG | + | chr2_3:20723161-20723180 | Msa0283490:intron | 35.0% |
| TCTCTATTCTATGCTTGAGA+GGG | - | chr2_3:20723250-20723269 | None:intergenic | 35.0% | |
| ATCTCTATTCTATGCTTGAG+AGG | - | chr2_3:20723251-20723270 | None:intergenic | 35.0% | |
| ATCAAAGTAGAAAAGAGTGG+AGG | + | chr2_3:20723324-20723343 | Msa0283490:intron | 35.0% | |
| TCAAAGTAGAAAAGAGTGGA+GGG | + | chr2_3:20723325-20723344 | Msa0283490:intron | 35.0% | |
| CCTAATTCATGTATCACTAG+TGG | - | chr2_3:20723369-20723388 | None:intergenic | 35.0% | |
| CCACTAGTGATACATGAATT+AGG | + | chr2_3:20723366-20723385 | Msa0283490:intron | 35.0% | |
| !! | GGTTAACTTGTATCATGAGA+CGG | + | chr2_3:20723388-20723407 | Msa0283490:intron | 35.0% |
| !! | GTTAACTTGTATCATGAGAC+GGG | + | chr2_3:20723389-20723408 | Msa0283490:intron | 35.0% |
| AAAAATTAAACCACGCGGTA+AGG | - | chr2_3:20723494-20723513 | None:intergenic | 35.0% | |
| !! | TGACAAGGATTTTGCCATTT+TGG | - | chr2_3:20723651-20723670 | None:intergenic | 35.0% |
| ATATACACGCAGATATGACA+AGG | - | chr2_3:20723666-20723685 | None:intergenic | 35.0% | |
| !! | AAATGTTAACTTGTGCCCTT+GGG | - | chr2_3:20723977-20723996 | None:intergenic | 35.0% |
| TTCAAAGCTCATCAGAGTTA+GGG | + | chr2_3:20724058-20724077 | Msa0283490:intron | 35.0% | |
| ! | GGTGAAGAATCTTTTCTTTG+TGG | - | chr2_3:20724316-20724335 | None:intergenic | 35.0% |
| ATAAGTGTTCCACTCATTGT+GGG | - | chr2_3:20725739-20725758 | None:intergenic | 35.0% | |
| AATAAGTGTTCCACTCATTG+TGG | - | chr2_3:20725740-20725759 | None:intergenic | 35.0% | |
| GTGTTGGAGAGATAGATTTA+CGG | - | chr2_3:20726151-20726170 | None:intergenic | 35.0% | |
| ! | TGAGGTATCTATTTGGTTCA+AGG | + | chr2_3:20726266-20726285 | Msa0283490:intron | 35.0% |
| TGCACAAAATCTGTCAGTAA+TGG | + | chr2_3:20726386-20726405 | Msa0283490:intron | 35.0% | |
| !! | GTCAGTAATGGATATTACTG+AGG | + | chr2_3:20726398-20726417 | Msa0283490:intron | 35.0% |
| AATGGATATTACTGAGGGAT+TGG | + | chr2_3:20726404-20726423 | Msa0283490:intron | 35.0% | |
| ACTGATGTCAGTATTACTGA+GGG | - | chr2_3:20726433-20726452 | None:intergenic | 35.0% | |
| TACTGATGTCAGTATTACTG+AGG | - | chr2_3:20726434-20726453 | None:intergenic | 35.0% | |
| ACTGACATCAGTATTGTTAC+TGG | + | chr2_3:20726441-20726460 | Msa0283490:intron | 35.0% | |
| TATTCCCTCAGTAATTACTG+GGG | + | chr2_3:20726519-20726538 | Msa0283490:intron | 35.0% | |
| CTCACGTTGGACATAATTAA+CGG | - | chr2_3:20727057-20727076 | None:intergenic | 35.0% | |
| CACGTGAATGAGCAATAAAA+GGG | + | chr2_3:20727156-20727175 | Msa0283490:intron | 35.0% | |
| CTATGAAAATACGAAAGCCA+CGG | - | chr2_3:20727263-20727282 | None:intergenic | 35.0% | |
| GTGATGAGTACAAGCTTTAC+TGG | + | chr2_3:20718609-20718628 | Msa0283490:CDS | 40.0% | |
| !!! | GATTGGATGAGGCTTTTTCA+GGG | + | chr2_3:20718783-20718802 | Msa0283490:CDS | 40.0% |
| ! | TTGTCTCTGAAAGGAATAGG+AGG | + | chr2_3:20718864-20718883 | Msa0283490:CDS | 40.0% |
| CGAAAGGGAATAGCAAAATC+GGG | - | chr2_3:20719536-20719555 | None:intergenic | 40.0% | |
| GACTTTACTTCAGGTCGAAA+GGG | - | chr2_3:20719551-20719570 | None:intergenic | 40.0% | |
| CAAAATCGGGACTTTACTTC+AGG | - | chr2_3:20719560-20719579 | None:intergenic | 40.0% | |
| ATCAATCGAACGTCTAACCT+AGG | - | chr2_3:20719587-20719606 | None:intergenic | 40.0% | |
| CTGATCTGTTCTCTTCTTCT+TGG | - | chr2_3:20719890-20719909 | None:intergenic | 40.0% | |
| CTTTCCAATTGAAGTCCTTG+AGG | + | chr2_3:20719936-20719955 | Msa0283490:CDS | 40.0% | |
| GAGATGATGATAGAGACAGT+GGG | - | chr2_3:20719970-20719989 | None:intergenic | 40.0% | |
| AGAGATGATGATAGAGACAG+TGG | - | chr2_3:20719971-20719990 | None:intergenic | 40.0% | |
| ATCACTGAGCTCACAACTTA+TGG | + | chr2_3:20720036-20720055 | Msa0283490:intron | 40.0% | |
| CCAAGTTATGTGTGAGTCAA+TGG | - | chr2_3:20720063-20720082 | None:intergenic | 40.0% | |
| !! | CCATTGACTCACACATAACT+TGG | + | chr2_3:20720060-20720079 | Msa0283490:intron | 40.0% |
| !!! | TTCATTTTGAAACGGAGGGA+TGG | - | chr2_3:20720156-20720175 | None:intergenic | 40.0% |
| !!! | CAACGTTCATTTTGAAACGG+AGG | - | chr2_3:20720161-20720180 | None:intergenic | 40.0% |
| AATGGTAGCCCTTATTAAGG+TGG | - | chr2_3:20720936-20720955 | None:intergenic | 40.0% | |
| TATATGGTTGAGTGCAGCTT+AGG | + | chr2_3:20721230-20721249 | Msa0283490:intron | 40.0% | |
| ATATGGTTGAGTGCAGCTTA+GGG | + | chr2_3:20721231-20721250 | Msa0283490:intron | 40.0% | |
| CAGCTTAGGGTTACATACAT+GGG | + | chr2_3:20721244-20721263 | Msa0283490:intron | 40.0% | |
| TAACAAAAGGGCAGACACAA+TGG | + | chr2_3:20721297-20721316 | Msa0283490:CDS | 40.0% | |
| GCATTGTTATATGTAGGGGT+CGG | + | chr2_3:20721857-20721876 | Msa0283490:intron | 40.0% | |
| CATTGTTATATGTAGGGGTC+GGG | + | chr2_3:20721858-20721877 | Msa0283490:intron | 40.0% | |
| ATTGTTATATGTAGGGGTCG+GGG | + | chr2_3:20721859-20721878 | Msa0283490:intron | 40.0% | |
| ! | CTTTTGTAAAAGTGGTGAGC+GGG | - | chr2_3:20722115-20722134 | None:intergenic | 40.0% |
| !! | GCTCACCACTTTTACAAAAG+TGG | + | chr2_3:20722115-20722134 | Msa0283490:intron | 40.0% |
| GGTACTTAACTCGAATGTTC+TGG | - | chr2_3:20722209-20722228 | None:intergenic | 40.0% | |
| AATGGGAGAAATTACACACG+TGG | - | chr2_3:20722230-20722249 | None:intergenic | 40.0% | |
| AGGGAGGAATAAGATTGGTA+TGG | + | chr2_3:20722405-20722424 | Msa0283490:intron | 40.0% | |
| GACACTTAAAAAGGAACGGA+GGG | - | chr2_3:20723061-20723080 | None:intergenic | 40.0% | |
| GACACTTAAAAAGGAACGGA+TGG | + | chr2_3:20723061-20723080 | Msa0283490:intron | 40.0% | |
| !!! | GGATTTTGCCATTTTGGTGT+GGG | - | chr2_3:20723645-20723664 | None:intergenic | 40.0% |
| !!! | AGGATTTTGCCATTTTGGTG+TGG | - | chr2_3:20723646-20723665 | None:intergenic | 40.0% |
| !! | TCATGTTAACTTGTGCCCTT+AGG | + | chr2_3:20723819-20723838 | Msa0283490:intron | 40.0% |
| !! | CATGTTAACTTGTGCCCTTA+GGG | + | chr2_3:20723820-20723839 | Msa0283490:intron | 40.0% |
| !! | TTCCTTAACTTGTGCCCTAA+GGG | - | chr2_3:20723837-20723856 | None:intergenic | 40.0% |
| TTCCTTAACTTATGCCCCAA+GGG | + | chr2_3:20723959-20723978 | Msa0283490:intron | 40.0% | |
| !! | AATGTTAACTTGTGCCCTTG+GGG | - | chr2_3:20723976-20723995 | None:intergenic | 40.0% |
| !! | GAAATGTTAACTTGTGCCCT+TGG | - | chr2_3:20723978-20723997 | None:intergenic | 40.0% |
| CTTCAAAGCTCATCAGAGTT+AGG | + | chr2_3:20724057-20724076 | Msa0283490:intron | 40.0% | |
| ! | CAGAGTTAGGGTTGATTTCA+AGG | + | chr2_3:20724070-20724089 | Msa0283490:intron | 40.0% |
| AAAGCTGAAGGTCGTTATCA+AGG | - | chr2_3:20724337-20724356 | None:intergenic | 40.0% | |
| TTTATGGGCAAGTTTCCATG+AGG | + | chr2_3:20724854-20724873 | Msa0283490:intron | 40.0% | |
| TTGATATGTCCCACAATGAG+TGG | + | chr2_3:20725727-20725746 | Msa0283490:intron | 40.0% | |
| TCAAGTAACCCTATTGTGGA+TGG | + | chr2_3:20726298-20726317 | Msa0283490:intron | 40.0% | |
| TGCTAAGACCATCCACAATA+GGG | - | chr2_3:20726309-20726328 | None:intergenic | 40.0% | |
| ATGCTAAGACCATCCACAAT+AGG | - | chr2_3:20726310-20726329 | None:intergenic | 40.0% | |
| TTGTGCATTACTGAGTCTCA+AGG | - | chr2_3:20726373-20726392 | None:intergenic | 40.0% | |
| GACATCAGTATTGTTACTGG+CGG | + | chr2_3:20726444-20726463 | Msa0283490:intron | 40.0% | |
| ! | GCGGAATTTTCCCTCAATAA+CGG | + | chr2_3:20726463-20726482 | Msa0283490:intron | 40.0% |
| !! | ATTTTCCCTCAATAACGGAG+AGG | + | chr2_3:20726468-20726487 | Msa0283490:intron | 40.0% |
| AACTACCTCTCCGTTATTGA+GGG | - | chr2_3:20726476-20726495 | None:intergenic | 40.0% | |
| TAACTACCTCTCCGTTATTG+AGG | - | chr2_3:20726477-20726496 | None:intergenic | 40.0% | |
| ATTCCCTCAGTAATTACTGG+GGG | + | chr2_3:20726520-20726539 | Msa0283490:intron | 40.0% | |
| CCCTTCATTAGATGCTCATA+GGG | - | chr2_3:20727000-20727019 | None:intergenic | 40.0% | |
| CCCTATGAGCATCTAATGAA+GGG | + | chr2_3:20726997-20727016 | Msa0283490:exon | 40.0% | |
| TCCCTTCATTAGATGCTCAT+AGG | - | chr2_3:20727001-20727020 | None:intergenic | 40.0% | |
| GAACATGAGTTAACTCACGT+TGG | - | chr2_3:20727070-20727089 | None:intergenic | 40.0% | |
| GCACGTGAATGAGCAATAAA+AGG | + | chr2_3:20727155-20727174 | Msa0283490:intron | 40.0% | |
| CTCATCACCAATGTTCTCCA+TGG | - | chr2_3:20718597-20718616 | None:intergenic | 45.0% | |
| TTGGGTTTGGAGGAACATGT+TGG | - | chr2_3:20718639-20718658 | None:intergenic | 45.0% | |
| TATCAAGCTCTTGGGTTTGG+AGG | - | chr2_3:20718649-20718668 | None:intergenic | 45.0% | |
| TCCAAACCCAAGAGCTTGAT+AGG | + | chr2_3:20718648-20718667 | Msa0283490:CDS | 45.0% | |
| ACCTATCAAGCTCTTGGGTT+TGG | - | chr2_3:20718652-20718671 | None:intergenic | 45.0% | |
| TATATGGTTGTGGTTGCAGC+TGG | + | chr2_3:20718759-20718778 | Msa0283490:intron | 45.0% | |
| ATATGGTTGTGGTTGCAGCT+GGG | + | chr2_3:20718760-20718779 | Msa0283490:intron | 45.0% | |
| !! | GGATTGGATGAGGCTTTTTC+AGG | + | chr2_3:20718782-20718801 | Msa0283490:CDS | 45.0% |
| TATGATTCAAGCTCCCCAGA+TGG | + | chr2_3:20718809-20718828 | Msa0283490:CDS | 45.0% | |
| ACTCTTTGCACTTAGAGCAG+TGG | + | chr2_3:20718904-20718923 | Msa0283490:CDS | 45.0% | |
| AGTGGTCCCAAACATTAGCA+AGG | + | chr2_3:20718922-20718941 | Msa0283490:CDS | 45.0% | |
| GGACTTTACTTCAGGTCGAA+AGG | - | chr2_3:20719552-20719571 | None:intergenic | 45.0% | |
| !! | AGTCCCGATTTTGACAACCT+AGG | + | chr2_3:20719567-20719586 | Msa0283490:intron | 45.0% |
| ! | AAGAGCTTCCTGTGTTGCTA+AGG | + | chr2_3:20719863-20719882 | Msa0283490:CDS | 45.0% |
| TTCTTGGACCTTAGCAACAC+AGG | - | chr2_3:20719874-20719893 | None:intergenic | 45.0% | |
| GGCAATGGTAGCCCTTATTA+AGG | - | chr2_3:20720939-20720958 | None:intergenic | 45.0% | |
| ! | TTCTCTACTAGGGTACCTGA+TGG | - | chr2_3:20720965-20720984 | None:intergenic | 45.0% |
| GCAGCTTAGGGTTACATACA+TGG | + | chr2_3:20721243-20721262 | Msa0283490:intron | 45.0% | |
| ! | GCCAACATCACCTCTTTTTC+AGG | + | chr2_3:20721367-20721386 | Msa0283490:CDS | 45.0% |
| GCCTGAAAAAGAGGTGATGT+TGG | - | chr2_3:20721371-20721390 | None:intergenic | 45.0% | |
| !!! | ACATCACCTCTTTTTCAGGC+AGG | + | chr2_3:20721371-20721390 | Msa0283490:CDS | 45.0% |
| CAAAAGCCTGCCTGAAAAAG+AGG | - | chr2_3:20721380-20721399 | None:intergenic | 45.0% | |
| ! | ATGAATAAGTGGGGTGTCTG+TGG | - | chr2_3:20721668-20721687 | None:intergenic | 45.0% |
| TGTGAGCATAGCTCAGTTGA+CGG | + | chr2_3:20721828-20721847 | Msa0283490:intron | 45.0% | |
| CGACACTTAAAAAGGAACGG+AGG | - | chr2_3:20723060-20723079 | None:intergenic | 45.0% | |
| ATGTGAGAAAGGAGTGGCTT+TGG | - | chr2_3:20723620-20723639 | None:intergenic | 45.0% | |
| TCACATCACCCACACCAAAA+TGG | + | chr2_3:20723634-20723653 | Msa0283490:intron | 45.0% | |
| !!! | TAGTGTTTTGGGGCTCGTTA+GGG | + | chr2_3:20723718-20723737 | Msa0283490:intron | 45.0% |
| !! | GTTCCTTAACTTGTGCCCTA+AGG | - | chr2_3:20723838-20723857 | None:intergenic | 45.0% |
| GTTCCTTAACTTATGCCCCA+AGG | + | chr2_3:20723958-20723977 | Msa0283490:intron | 45.0% | |
| !! | TGAGAGTGCTCTCAAAGCAT+TGG | - | chr2_3:20724273-20724292 | None:intergenic | 45.0% |
| ! | CCAACTGATTTACACTCACG+TGG | - | chr2_3:20725940-20725959 | None:intergenic | 45.0% |
| CCACGTGAGTGTAAATCAGT+TGG | + | chr2_3:20725937-20725956 | Msa0283490:intron | 45.0% | |
| GTGAGTGTAAATCAGTTGGC+AGG | + | chr2_3:20725941-20725960 | Msa0283490:intron | 45.0% | |
| ! | AGGTGAATAACTAGGGTGTC+TGG | - | chr2_3:20726004-20726023 | None:intergenic | 45.0% |
| GAGGTCAAGTAACCCTATTG+TGG | + | chr2_3:20726294-20726313 | Msa0283490:intron | 45.0% | |
| GTTCCCCCAGTAATTACTGA+GGG | - | chr2_3:20726526-20726545 | None:intergenic | 45.0% | |
| TGTTCCCCCAGTAATTACTG+AGG | - | chr2_3:20726527-20726546 | None:intergenic | 45.0% | |
| AGGGTCATTAAGAGCTGCAA+TGG | - | chr2_3:20726972-20726991 | None:intergenic | 45.0% | |
| AGATGCTCATAGGGCTTAGA+GGG | - | chr2_3:20726991-20727010 | None:intergenic | 45.0% | |
| TAGATGCTCATAGGGCTTAG+AGG | - | chr2_3:20726992-20727011 | None:intergenic | 45.0% | |
| GCCCTATGAGCATCTAATGA+AGG | + | chr2_3:20726996-20727015 | Msa0283490:exon | 45.0% | |
| TAGCGTGAGTTAACTCACGT+AGG | + | chr2_3:20727133-20727152 | Msa0283490:intron | 45.0% | |
| AGTATAGGATTGAGGAACCG+TGG | + | chr2_3:20727243-20727262 | Msa0283490:three_prime_UTR | 45.0% | |
| !! | AATTACTAATAAATAATTAA+TGG | - | chr2_3:20718971-20718990 | None:intergenic | 5.0% |
| !!! | TATTTATATTTTATTATAGA+CGG | + | chr2_3:20719146-20719165 | Msa0283490:intron | 5.0% |
| !!! | ATATTTAGTATTAATTTTTT+TGG | + | chr2_3:20719409-20719428 | Msa0283490:intron | 5.0% |
| !!! | TATTTAGTATTAATTTTTTT+GGG | + | chr2_3:20719410-20719429 | Msa0283490:intron | 5.0% |
| !! | TTAAATAAAAAATAATACTT+TGG | + | chr2_3:20720279-20720298 | Msa0283490:intron | 5.0% |
| !!! | TTTTTTTTTTTTTTTTAAGA+TGG | - | chr2_3:20720570-20720589 | None:intergenic | 5.0% |
| !!! | AATATATATTTTTAATAAAG+AGG | - | chr2_3:20721484-20721503 | None:intergenic | 5.0% |
| !!! | GATAATTTTTAAAATAAAAT+TGG | - | chr2_3:20722002-20722021 | None:intergenic | 5.0% |
| !!! | ATTTTATTTTAAAAATTATC+AGG | + | chr2_3:20722002-20722021 | Msa0283490:intron | 5.0% |
| !! | ACAATAATTTAATAATATTT+AGG | + | chr2_3:20723143-20723162 | Msa0283490:intron | 5.0% |
| !! | CAATAATTTAATAATATTTA+GGG | + | chr2_3:20723144-20723163 | Msa0283490:intron | 5.0% |
| !! | TCAATTAAATTTAATATTTA+AGG | - | chr2_3:20725239-20725258 | None:intergenic | 5.0% |
| !!! | ATTTTTTTAATTCAAAATTA+GGG | + | chr2_3:20726790-20726809 | Msa0283490:intron | 5.0% |
| TATGGTTGTGGTTGCAGCTG+GGG | + | chr2_3:20718761-20718780 | Msa0283490:intron | 50.0% | |
| ! | TGATGATGCTGCACCATCTG+GGG | - | chr2_3:20718825-20718844 | None:intergenic | 50.0% |
| ! | CTGATGATGCTGCACCATCT+GGG | - | chr2_3:20718826-20718845 | None:intergenic | 50.0% |
| CAGTGGGCCAATTTACCTCA+AGG | - | chr2_3:20719954-20719973 | None:intergenic | 50.0% | |
| ! | TACTAGGGTACCTGATGGTG+TGG | - | chr2_3:20720960-20720979 | None:intergenic | 50.0% |
| TAAACCACGCGGTAAGGTCT+TGG | - | chr2_3:20723488-20723507 | None:intergenic | 50.0% | |
| !! | AAAGGAGTGGCTTTGGTGGA+AGG | - | chr2_3:20723613-20723632 | None:intergenic | 50.0% |
| !! | TGAGAAAGGAGTGGCTTTGG+TGG | - | chr2_3:20723617-20723636 | None:intergenic | 50.0% |
| TGGGTGATGTGAGAAAGGAG+TGG | - | chr2_3:20723626-20723645 | None:intergenic | 50.0% | |
| TGGTGTGGGTGATGTGAGAA+AGG | - | chr2_3:20723631-20723650 | None:intergenic | 50.0% | |
| !!! | GTAGTGTTTTGGGGCTCGTT+AGG | + | chr2_3:20723717-20723736 | Msa0283490:intron | 50.0% |
| TGCCCTTAGGGCACAAGTTA+AGG | + | chr2_3:20723832-20723851 | Msa0283490:intron | 50.0% | |
| TGCCCTTGGGGCATAAGTTA+AGG | - | chr2_3:20723964-20723983 | None:intergenic | 50.0% | |
| TTGTGGTTGCAGCTGGGGAT+TGG | + | chr2_3:20718766-20718785 | Msa0283490:intron | 55.0% | |
| TTGCAGCTGGGGATTGGATG+AGG | + | chr2_3:20718772-20718791 | Msa0283490:intron | 55.0% | |
| ! | CCTGATGATGCTGCACCATC+TGG | - | chr2_3:20718827-20718846 | None:intergenic | 55.0% |
| CCAGATGGTGCAGCATCATC+AGG | + | chr2_3:20718824-20718843 | Msa0283490:CDS | 55.0% | |
| GCTACCATTGCCACACCATC+AGG | + | chr2_3:20720947-20720966 | Msa0283490:intron | 55.0% | |
| ! | GGTACCTGATGGTGTGGCAA+TGG | - | chr2_3:20720954-20720973 | None:intergenic | 55.0% |
| ATGACCAAGACCTTACCGCG+TGG | + | chr2_3:20723481-20723500 | Msa0283490:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_3 | gene | 20718453 | 20727366 | 20718453 | ID=Msa0283490;Name=Msa0283490 |
| chr2_3 | mRNA | 20718453 | 20727366 | 20718453 | ID=Msa0283490-mRNA-1;Parent=Msa0283490;Name=Msa0283490-mRNA-1;_AED=0.17;_eAED=0.17;_QI=143|1|1|1|0.8|0.66|6|169|244 |
| chr2_3 | exon | 20718453 | 20718669 | 20718453 | ID=Msa0283490-mRNA-1:exon:8201;Parent=Msa0283490-mRNA-1 |
| chr2_3 | exon | 20718778 | 20718943 | 20718778 | ID=Msa0283490-mRNA-1:exon:8202;Parent=Msa0283490-mRNA-1 |
| chr2_3 | exon | 20719724 | 20719957 | 20719724 | ID=Msa0283490-mRNA-1:exon:8203;Parent=Msa0283490-mRNA-1 |
| chr2_3 | exon | 20721247 | 20721417 | 20721247 | ID=Msa0283490-mRNA-1:exon:8204;Parent=Msa0283490-mRNA-1 |
| chr2_3 | exon | 20726923 | 20727017 | 20726923 | ID=Msa0283490-mRNA-1:exon:8205;Parent=Msa0283490-mRNA-1 |
| chr2_3 | exon | 20727203 | 20727366 | 20727203 | ID=Msa0283490-mRNA-1:exon:8206;Parent=Msa0283490-mRNA-1 |
| chr2_3 | five_prime_UTR | 20718453 | 20718595 | 20718453 | ID=Msa0283490-mRNA-1:five_prime_utr;Parent=Msa0283490-mRNA-1 |
| chr2_3 | CDS | 20718596 | 20718669 | 20718596 | ID=Msa0283490-mRNA-1:cds;Parent=Msa0283490-mRNA-1 |
| chr2_3 | CDS | 20718778 | 20718943 | 20718778 | ID=Msa0283490-mRNA-1:cds;Parent=Msa0283490-mRNA-1 |
| chr2_3 | CDS | 20719724 | 20719957 | 20719724 | ID=Msa0283490-mRNA-1:cds;Parent=Msa0283490-mRNA-1 |
| chr2_3 | CDS | 20721247 | 20721417 | 20721247 | ID=Msa0283490-mRNA-1:cds;Parent=Msa0283490-mRNA-1 |
| chr2_3 | CDS | 20726923 | 20727012 | 20726923 | ID=Msa0283490-mRNA-1:cds;Parent=Msa0283490-mRNA-1 |
| chr2_3 | three_prime_UTR | 20727013 | 20727017 | 20727013 | ID=Msa0283490-mRNA-1:three_prime_utr;Parent=Msa0283490-mRNA-1 |
| chr2_3 | three_prime_UTR | 20727203 | 20727366 | 20727203 | ID=Msa0283490-mRNA-1:three_prime_utr;Parent=Msa0283490-mRNA-1 |
| Gene Sequence |
| Protein sequence |
