AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0427700

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0427700 MtrunA17_Chr3g0130631 89.960 747 47 3 1 742 1 724 0.0 1069
Msa0427700 MtrunA17_Chr8g0384651 75.260 384 78 4 366 743 531 903 1.05e-108 352
Msa0427700 MtrunA17_Chr8g0384651 54.673 428 128 14 1 367 1 423 8.31e-93 309
Msa0427700 MtrunA17_Chr8g0372931 48.184 413 145 12 362 742 1054 1429 2.66e-78 275
Msa0427700 MtrunA17_Chr3g0125121 59.494 237 88 4 511 742 277 510 6.81e-74 249
Msa0427700 MtrunA17_Chr1g0155381 43.213 361 136 6 388 742 1061 1358 5.61e-65 235
Msa0427700 MtrunA17_Chr3g0141421 55.789 95 42 0 648 742 588 682 7.91e-32 132
Msa0427700 MtrunA17_Chr2g0304091 56.818 88 38 0 655 742 356 443 4.12e-28 118
Msa0427700 MtrunA17_Chr8g0376701 52.273 88 42 0 655 742 363 450 6.59e-28 117
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0427700 AT4G12770.2 54.491 334 106 7 452 742 548 878 8.99e-83 282
Msa0427700 AT4G12770.2 32.168 429 164 13 1 356 1 375 2.08e-34 141
Msa0427700 AT4G12780.3 56.522 345 135 6 412 742 523 866 1.02e-82 281
Msa0427700 AT4G12780.3 28.637 433 149 17 1 356 1 350 1.91e-17 87.4
Msa0427700 AT4G12780.1 56.522 345 135 6 412 742 550 893 1.15e-82 282
Msa0427700 AT4G12780.1 30.679 427 163 18 1 350 1 371 6.81e-28 120
Msa0427700 AT4G12770.1 54.030 335 108 7 452 742 548 880 9.63e-82 279
Msa0427700 AT4G12770.1 32.168 429 164 13 1 356 1 375 1.93e-34 141
Msa0427700 AT4G12780.2 54.420 362 133 8 412 742 523 883 7.87e-79 271
Msa0427700 AT4G12780.2 28.637 433 149 17 1 356 1 350 3.19e-17 87.0
Msa0427700 AT1G21660.1 52.743 237 105 3 506 742 283 512 5.19e-71 241
Msa0427700 AT4G36520.1 49.329 298 84 7 456 742 1171 1412 1.26e-64 234
Msa0427700 AT1G75310.2 40.849 377 162 8 368 742 1124 1441 2.32e-56 209
Msa0427700 AT1G75310.1 44.966 298 134 6 449 742 1167 1438 1.26e-52 198
Msa0427700 AT4G12780.5 56.863 255 93 7 412 651 550 802 1.85e-28 122
Msa0427700 AT4G12780.5 30.679 427 163 18 1 350 1 371 1.78e-27 119
Msa0427700 AT4G12780.6 56.863 255 93 7 412 651 523 775 2.46e-28 122
Msa0427700 AT4G12780.6 28.637 433 149 17 1 356 1 350 5.95e-17 85.9
Msa0427700 AT4G12780.4 56.863 255 93 7 412 651 523 775 2.46e-28 122
Msa0427700 AT4G12780.4 28.637 433 149 17 1 356 1 350 5.95e-17 85.9
Msa0427700 AT1G75100.1 46.296 108 58 0 635 742 533 640 1.09e-27 119
Msa0427700 AT1G30280.1 44.318 88 48 1 662 748 361 448 8.78e-20 93.6
Msa0427700 AT1G30280.2 48.148 81 41 1 662 741 361 441 2.08e-19 92.4

Find 205 sgRNAs with CRISPR-Local

Find 451 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAGACACAGTTGTAGGTTTC+TGG 0.157218 3_2:-78378649 None:intergenic
TCCCTCAGCTGGAGAATTTC+AGG 0.198356 3_2:+78378847 Msa0427700:CDS
CCCTTCTGCTGCACTTTATC+AGG 0.215143 3_2:-78380466 None:intergenic
TACAGCCGCTACTGTTAAAA+AGG 0.236113 3_2:+78380414 Msa0427700:CDS
CAGCAGCTGCAGCTCTTTCT+CGG 0.239034 3_2:-78377911 None:intergenic
TTGTTATGTGTTCGTCTATC+AGG 0.263486 3_2:-78377147 None:intergenic
GAAAGATCATCAACAATATT+AGG 0.291136 3_2:-78378698 None:intergenic
AATTTACTAATCTCTTCTAA+TGG 0.298569 3_2:-78376907 None:intergenic
CAGCAGCCTTCTCAGCTCTT+TGG 0.302766 3_2:-78377659 None:intergenic
GATGATTTGATCAATGGATT+TGG 0.304715 3_2:+78375062 Msa0427700:CDS
TGAATGATGATCAGGTATTA+TGG 0.312370 3_2:+78380350 Msa0427700:intron
CCTCAGATCATGACGATATA+TGG 0.313995 3_2:+78377349 Msa0427700:CDS
CCTCAGCAGCAGCCCTTTCA+CGG 0.316110 3_2:-78377752 None:intergenic
AGCAGCTGCAGCTCTTTCTC+GGG 0.328646 3_2:-78377910 None:intergenic
TTAGAATCAGATGAATATTT+AGG 0.329043 3_2:-78377219 None:intergenic
TTCAATTGATTCTTTATCTC+TGG 0.335760 3_2:-78377106 None:intergenic
CACAGGCCCACTCCTGATAT+TGG 0.347676 3_2:+78376763 Msa0427700:intron
CGTTTATTAGCTACTGAATT+CGG 0.366518 3_2:+78374720 Msa0427700:CDS
ATTTACTAATCTCTTCTAAT+GGG 0.371043 3_2:-78376906 None:intergenic
TTGTGTTTGACCACGGTGTT+GGG 0.371244 3_2:-78377071 None:intergenic
ATGATTTGATCAATGGATTT+GGG 0.374205 3_2:+78375063 Msa0427700:CDS
GCAGAAATATATTGCAGAAA+AGG 0.382951 3_2:+78380501 Msa0427700:CDS
GGTGAAATTGGAAGATCCTT+TGG 0.383015 3_2:-78374787 None:intergenic
AGGAGGCCTTGGAGCGCTAT+TGG 0.387575 3_2:-78377997 None:intergenic
ATGTTTGAAGACACAGTTGT+AGG 0.389263 3_2:-78378656 None:intergenic
GATGATCTTCTCGGCGGATT+CGG 0.391097 3_2:+78374993 Msa0427700:CDS
TAAAGAGGTTTATCATAAAC+AGG 0.396140 3_2:-78374939 None:intergenic
TCTGATGATGAACCAATATC+AGG 0.396642 3_2:-78376775 None:intergenic
CTCAGCAGCAGCCCTTTCAC+GGG 0.403036 3_2:-78377751 None:intergenic
AACTCCTGATCATGTTCAAC+AGG 0.404831 3_2:-78377174 None:intergenic
GAAGTTAAGCGCTGGGCTGC+AGG 0.405772 3_2:+78379746 Msa0427700:CDS
GAGTTAGACCTAGGAGGCCT+TGG 0.407343 3_2:-78378008 None:intergenic
GAAGTTGAGAGAGGAAGTTT+TGG 0.413068 3_2:-78374808 None:intergenic
CGCTGGGCTGCAGGGAAAGA+GGG 0.414763 3_2:+78379755 Msa0427700:CDS
GTAGGTTTCTGGTTTACCTC+TGG 0.416290 3_2:-78378638 None:intergenic
CCTCTGAAGGCGTTCCAATC+TGG 0.418587 3_2:-78378903 None:intergenic
CTGCTTCTCTCCTCTGACTT+GGG 0.419390 3_2:-78377459 None:intergenic
AGGGTCTTCTGTTGCATTGG+AGG 0.419847 3_2:-78376824 None:intergenic
CGAGGAGGAGGTGGTCTTGA+AGG 0.420028 3_2:-78377423 None:intergenic
GAAAATAAATAAACAAGAAA+AGG 0.420079 3_2:+78374542 Msa0427700:five_prime_UTR
ACTGCCTGCCAACCACATTC+AGG 0.420484 3_2:-78380373 None:intergenic
AGCTAGAGTGCGTGCTGAAA+GGG 0.423395 3_2:+78377701 Msa0427700:CDS
GTTGCGTTTGATGATCTTCT+CGG 0.423406 3_2:+78374984 Msa0427700:CDS
AAATCGTTCATCGTGAGATC+TGG 0.427946 3_2:-78374693 None:intergenic
GCGCTGGGCTGCAGGGAAAG+AGG 0.430219 3_2:+78379754 Msa0427700:CDS
CTCAGTAACCACACCTTTGA+CGG 0.433699 3_2:-78375097 None:intergenic
GATAGTTCATCAAATTCTAA+TGG 0.437018 3_2:+78376955 Msa0427700:CDS
ACTGCTTCTCTCCTCTGACT+TGG 0.437860 3_2:-78377460 None:intergenic
CCGTCATCGTCGTCGTAAAG+AGG 0.439814 3_2:-78374954 None:intergenic
TGACCACGGTGTTGGGGAAT+CGG 0.440553 3_2:-78377064 None:intergenic
CTGAAAGGGCCGCTGTTCAG+AGG 0.442095 3_2:+78377715 Msa0427700:CDS
CTGCTGCTGAGGCAAAGAAA+AGG 0.445504 3_2:+78377763 Msa0427700:CDS
AAGAAGGGGAAGTAGGCATT+TGG 0.450918 3_2:-78377257 None:intergenic
AGGGCTGAAAAGGCTGCTGC+AGG 0.454335 3_2:+78377783 Msa0427700:CDS
AAACCATCATTAAAATAAGA+AGG 0.455056 3_2:-78377273 None:intergenic
AAGAATTGAAAGGGAAAGGA+AGG 0.455730 3_2:+78377530 Msa0427700:CDS
GATTCCTGTTGAACATGATC+AGG 0.457157 3_2:+78377170 Msa0427700:CDS
TGTGGAAAGGGCTGCTGCAG+AGG 0.458750 3_2:+78377887 Msa0427700:CDS
CGTTCTTCAGCGTGAGGGGA+CGG 0.458812 3_2:+78377973 Msa0427700:CDS
GTAGGCATTTGGCCAGCTAC+TGG 0.464119 3_2:-78377246 None:intergenic
TCAGAGAGGACTAGCAGATA+TGG 0.464943 3_2:+78377039 Msa0427700:CDS
AAAAGGGTCTTCTGTTGCAT+TGG 0.465313 3_2:-78376827 None:intergenic
GAAGAGATCGGAATCATGAT+TGG 0.465418 3_2:-78374859 None:intergenic
AAAGGCTGCTGCAGGGGAAA+AGG 0.465673 3_2:+78377791 Msa0427700:CDS
ACCGGAGGTGCTACGAGAGA+TGG 0.465933 3_2:-78374892 None:intergenic
GAGAGCAAAGAAGAATTGAA+AGG 0.467658 3_2:+78377520 Msa0427700:CDS
ATAGCGCTCCAAGGCCTCCT+AGG 0.469434 3_2:+78378000 Msa0427700:CDS
CACAAGCTGAAGCCCGTGAA+AGG 0.469852 3_2:+78377739 Msa0427700:CDS
GGCAAAGAAAAGGGCTGAAA+AGG 0.470382 3_2:+78377773 Msa0427700:CDS
CCGTGAAAGGGCTGCTGCTG+AGG 0.470897 3_2:+78377752 Msa0427700:CDS
ATCATAAACAGGCGAGTTGA+CGG 0.471295 3_2:-78374928 None:intergenic
CCGTGGTCAAACACAAGTTC+AGG 0.471860 3_2:+78377078 Msa0427700:CDS
CGAATTCAGTAGCTAATAAA+CGG 0.475132 3_2:-78374719 None:intergenic
TCCAAAATATGAAGAAAAGT+TGG 0.477629 3_2:+78377326 Msa0427700:CDS
GCTCCAACTGATTCATCCTC+AGG 0.479394 3_2:+78376871 Msa0427700:CDS
GGAGAATTTCAGGAAGTTGA+AGG 0.481680 3_2:+78378857 Msa0427700:CDS
ATATGTACTGGTCGAGGAGG+AGG 0.482183 3_2:-78377435 None:intergenic
GGAAAGAGAAAATGAAAGAC+AGG 0.482527 3_2:+78377584 Msa0427700:CDS
TTAAAATAAGAAGGGGAAGT+AGG 0.484614 3_2:-78377264 None:intergenic
AAGCTAGAGTGCGTGCTGAA+AGG 0.485213 3_2:+78377700 Msa0427700:CDS
AGAGCAAAGAAGAATTGAAA+GGG 0.486134 3_2:+78377521 Msa0427700:CDS
CCCATCTCTCGTAGCACCTC+CGG 0.486573 3_2:+78374891 Msa0427700:CDS
AGAAAGGCGAAAAGCCAGAT+TGG 0.487061 3_2:+78378889 Msa0427700:CDS
CTTGTGTTTGACCACGGTGT+TGG 0.489404 3_2:-78377072 None:intergenic
ACGGTGGTTTCTTCCGTCTA+CGG 0.494243 3_2:-78374667 None:intergenic
AAAGAAGAATTGAAAGGGAA+AGG 0.494666 3_2:+78377526 Msa0427700:CDS
GTTCTTCAGCGTGAGGGGAC+GGG 0.495306 3_2:+78377974 Msa0427700:CDS
GAGAACAACAGAGACTTGAG+AGG 0.495826 3_2:+78377562 Msa0427700:CDS
CTTAGTACATACATATTGTA+AGG 0.496733 3_2:-78379801 None:intergenic
GACGGACATGGAATCGAAAC+CGG 0.497502 3_2:-78374910 None:intergenic
CGCGCTCCTGAGCCCTCTGA+AGG 0.498449 3_2:-78378916 None:intergenic
GTCGGTGGATCAGCAGTTAG+AGG 0.500658 3_2:-78374642 None:intergenic
AGAAAATGAAAGACAGGCTG+TGG 0.501628 3_2:+78377590 Msa0427700:CDS
ATTGGAAGAGTGAAAGGATC+GGG 0.502219 3_2:-78374841 None:intergenic
GGGATTAGAATTGAAGAGAT+CGG 0.502447 3_2:-78374871 None:intergenic
CATATCTGCCCGAGAATTGA+CGG 0.506680 3_2:-78377301 None:intergenic
AAACCATGAGCAGCAGCAAA+AGG 0.509397 3_2:+78377485 Msa0427700:CDS
GAGTTTCATCAAGCGCCATA+TGG 0.510705 3_2:+78377192 Msa0427700:CDS
AACCATCATTAAAATAAGAA+GGG 0.510911 3_2:-78377272 None:intergenic
CTGTGTCTTCAAACATAAAG+AGG 0.511873 3_2:+78378663 Msa0427700:CDS
TTTGAAGCATCTCCCTCAGC+TGG 0.511972 3_2:+78378836 Msa0427700:intron
TGCTGCTGAGGCAAAGAAAA+GGG 0.513805 3_2:+78377764 Msa0427700:CDS
TCAACAATATTAGGTGATGA+TGG 0.515248 3_2:-78378689 None:intergenic
CCGGAGGTGCTACGAGAGAT+GGG 0.515653 3_2:-78374891 None:intergenic
ACAAGCTGAAGCCCGTGAAA+GGG 0.521348 3_2:+78377740 Msa0427700:CDS
TGGACTTTGAAGTTAAGCGC+TGG 0.522927 3_2:+78379738 Msa0427700:CDS
CTTCCGTCTACGGTGGTCGG+TGG 0.522990 3_2:-78374657 None:intergenic
GAATATTTAGGCATGCCATA+TGG 0.526400 3_2:-78377207 None:intergenic
TCTGCTCTCTTTGAGTCTGT+AGG 0.527874 3_2:-78379383 None:intergenic
TCTGACTTGGGAATATGTAC+TGG 0.528885 3_2:-78377447 None:intergenic
GGACTTTGAAGTTAAGCGCT+GGG 0.530794 3_2:+78379739 Msa0427700:CDS
CTTCTAATGGGTCTGAAAAG+TGG 0.534760 3_2:-78376894 None:intergenic
TTTATACTAGGCAAAGGCAT+TGG 0.535677 3_2:+78379341 Msa0427700:intron
TCAGAGGCTTGCGGAAACAC+TGG 0.536353 3_2:+78379718 Msa0427700:intron
CAGAACGTGCTGCTGTGGAA+AGG 0.537152 3_2:+78377874 Msa0427700:CDS
GAATCGTTCTTCAGCGTGAG+GGG 0.539328 3_2:+78377969 Msa0427700:CDS
GAATTTCCAAGTCCATCAAA+AGG 0.540071 3_2:-78377000 None:intergenic
GGCTGAAAAGGCTGCTGCAG+GGG 0.540322 3_2:+78377785 Msa0427700:CDS
ATCATGATTGGAAGAGTGAA+AGG 0.543443 3_2:-78374847 None:intergenic
ATGGCCTGAATGTGGTTGGC+AGG 0.545019 3_2:+78380369 Msa0427700:CDS
TTGAAGGGGAAAGTGAAGAA+AGG 0.545134 3_2:+78378873 Msa0427700:CDS
TCAGCAGTTAGAGGAAGAGA+AGG 0.545352 3_2:-78374633 None:intergenic
AGAACGTGCTGCTGTGGAAA+GGG 0.545428 3_2:+78377875 Msa0427700:CDS
ATTGGCTGAGAAGAATCAAC+GGG 0.546286 3_2:+78379359 Msa0427700:CDS
GGAACGCCTTCAGAGGGCTC+AGG 0.554110 3_2:+78378910 Msa0427700:CDS
GCAGTTAGAGGAAGAGAAGG+AGG 0.556656 3_2:-78374630 None:intergenic
GAGAATTTCAGGAAGTTGAA+GGG 0.556708 3_2:+78378858 Msa0427700:CDS
GATTCTAATAAACCAGTAGC+TGG 0.557003 3_2:+78377234 Msa0427700:CDS
AGCTCGCCAAAGAGCTGAGA+AGG 0.557004 3_2:+78377653 Msa0427700:CDS
GAAGGTGGTGGAGCAGAAGT+TGG 0.558690 3_2:-78377405 None:intergenic
AAGTTAAGCGCTGGGCTGCA+GGG 0.559252 3_2:+78379747 Msa0427700:CDS
GGGCTGAAAAGGCTGCTGCA+GGG 0.559351 3_2:+78377784 Msa0427700:CDS
TCCTGATAAAGTGCAGCAGA+AGG 0.559973 3_2:+78380465 Msa0427700:CDS
GGAACAAGTCCTCCCGTCAA+AGG 0.560199 3_2:+78375084 Msa0427700:CDS
TTTCTTCCGTCTACGGTGGT+CGG 0.560986 3_2:-78374660 None:intergenic
ATTCGGTCATTCGAAGAAAA+CGG 0.561173 3_2:+78375010 Msa0427700:CDS
TGTACTGGTCGAGGAGGAGG+TGG 0.561547 3_2:-78377432 None:intergenic
TCAGTAACCACACCTTTGAC+GGG 0.564015 3_2:-78375096 None:intergenic
TCCTGAAATTCTCCAGCTGA+GGG 0.565222 3_2:-78378848 None:intergenic
CCTCTTTACGACGACGATGA+CGG 0.565572 3_2:+78374954 Msa0427700:CDS
TAAAGCAGAACGTGCTGCTG+TGG 0.566166 3_2:+78377869 Msa0427700:CDS
TGGCCTGAGGATGAATCAGT+TGG 0.568887 3_2:-78376874 None:intergenic
TGAGCAGCAGCAAAAGGAGA+TGG 0.568955 3_2:+78377491 Msa0427700:CDS
TGAAAGGGCCGCTGTTCAGA+GGG 0.569740 3_2:+78377716 Msa0427700:CDS
ATGTGAATCGAAGTTGAGAG+AGG 0.572513 3_2:-78374817 None:intergenic
AACAGGCGAGTTGACGGACA+TGG 0.572944 3_2:-78374922 None:intergenic
TGAATCGTTCTTCAGCGTGA+GGG 0.573586 3_2:+78377968 Msa0427700:CDS
GCTGGGCTGCAGGGAAAGAG+GGG 0.574702 3_2:+78379756 Msa0427700:CDS
CCAGATTGGAACGCCTTCAG+AGG 0.574933 3_2:+78378903 Msa0427700:CDS
ATATCTGCCCGAGAATTGAC+GGG 0.576043 3_2:-78377300 None:intergenic
GTCCTCTCTGATGAAAATGC+TGG 0.577003 3_2:-78377027 None:intergenic
GATTGGAAGAGTGAAAGGAT+CGG 0.577344 3_2:-78374842 None:intergenic
GAGAAAGAGCTGCAGCTGCA+AGG 0.578548 3_2:+78377826 Msa0427700:CDS
GGAGGTGGTCTTGAAGGTGG+TGG 0.579037 3_2:-78377417 None:intergenic
TTCCTGAAATTCTCCAGCTG+AGG 0.579563 3_2:-78378849 None:intergenic
GTGAAGAATGAGAGAGGTGT+CGG 0.580582 3_2:+78375032 Msa0427700:CDS
GGAGGAGGTGGTCTTGAAGG+TGG 0.581949 3_2:-78377420 None:intergenic
GATCCACCGACCACCGTAGA+CGG 0.589033 3_2:+78374654 Msa0427700:five_prime_UTR
TGATGCACAATTTCAGCCAG+AGG 0.589144 3_2:+78378622 Msa0427700:CDS
CCATATATCGTCATGATCTG+AGG 0.593418 3_2:-78377349 None:intergenic
TTGAATCGTTCTTCAGCGTG+AGG 0.593892 3_2:+78377967 Msa0427700:CDS
GACGGGCCAATAGCGCTCCA+AGG 0.596506 3_2:+78377991 Msa0427700:CDS
ACCATCATTAAAATAAGAAG+GGG 0.596875 3_2:-78377271 None:intergenic
TTGGGAATATGTACTGGTCG+AGG 0.596893 3_2:-78377441 None:intergenic
AAAACGGTGAAGAATGAGAG+AGG 0.603787 3_2:+78375026 Msa0427700:CDS
CAGATTGGAACGCCTTCAGA+GGG 0.608050 3_2:+78378904 Msa0427700:CDS
ATTGGTGCAGATTTGCCTTG+AGG 0.610923 3_2:-78374750 None:intergenic
AATATATTTCTGCTGAAGAG+TGG 0.620107 3_2:-78380491 None:intergenic
CATTGGCTGAGAAGAATCAA+CGG 0.622100 3_2:+78379358 Msa0427700:CDS
GATGAACCAATATCAGGAGT+GGG 0.623236 3_2:-78376769 None:intergenic
TTGGATGATGATGATGACAT+TGG 0.623868 3_2:-78374768 None:intergenic
TCATGACGATATATGGCTAA+CGG 0.623870 3_2:+78377356 Msa0427700:CDS
CCTGATAAAGTGCAGCAGAA+GGG 0.624350 3_2:+78380466 Msa0427700:CDS
GAATTCGGTTTGAAACCTCA+AGG 0.625188 3_2:+78374735 Msa0427700:CDS
TCAGAGGGCTCAGGAGCGCG+CGG 0.626791 3_2:+78378919 Msa0427700:CDS
AGAATTTCAGGAAGTTGAAG+GGG 0.630146 3_2:+78378859 Msa0427700:CDS
TGATGAACCAATATCAGGAG+TGG 0.633810 3_2:-78376770 None:intergenic
ATAAGATACTAAATCTGCAG+AGG 0.634146 3_2:-78380753 None:intergenic
CTCACAGAAGAGTTAGACCT+AGG 0.635511 3_2:-78378017 None:intergenic
TGAGGATGAATCAGTTGGAG+CGG 0.639821 3_2:-78376869 None:intergenic
ATGTCATCATCATCATCCAA+AGG 0.640651 3_2:+78374771 Msa0427700:CDS
TCGTGAGATCTGGTGAACGG+TGG 0.642494 3_2:-78374683 None:intergenic
TCATCGTGAGATCTGGTGAA+CGG 0.643199 3_2:-78374686 None:intergenic
GGTCAAACACAAGTTCAGGT+TGG 0.644850 3_2:+78377082 Msa0427700:CDS
GCAGCAGCAAAAGGAGATGG+AGG 0.644915 3_2:+78377494 Msa0427700:CDS
CAGTTAGAGGAAGAGAAGGA+GGG 0.646142 3_2:-78374629 None:intergenic
TATTATGGCCTGAATGTGGT+TGG 0.649392 3_2:+78380365 Msa0427700:CDS
GTGGTTTCTTCCGTCTACGG+TGG 0.651169 3_2:-78374664 None:intergenic
AGCTTGTGCCCTCTGAACAG+CGG 0.653667 3_2:-78377724 None:intergenic
AGAACAACAGAGACTTGAGA+GGG 0.653891 3_2:+78377563 Msa0427700:CDS
TGTGTTTGACCACGGTGTTG+GGG 0.654993 3_2:-78377070 None:intergenic
TGTGTCTTCAAACATAAAGA+GGG 0.655665 3_2:+78378664 Msa0427700:CDS
GAGAAGATCATCAAACGCAA+CGG 0.656158 3_2:-78374982 None:intergenic
ACATTGATTTCAGAGGCTTG+CGG 0.656214 3_2:+78379709 Msa0427700:intron
AGTACATATTCCCAAGTCAG+AGG 0.661965 3_2:+78377449 Msa0427700:CDS
ACAGAAGAGTTAGACCTAGG+AGG 0.662653 3_2:-78378014 None:intergenic
CCTGAACTTGTGTTTGACCA+CGG 0.670451 3_2:-78377078 None:intergenic
GGAATATGTACTGGTCGAGG+AGG 0.673478 3_2:-78377438 None:intergenic
GTAACCACACCTTTGACGGG+AGG 0.676329 3_2:-78375093 None:intergenic
CAGGTATTATGGCCTGAATG+TGG 0.679133 3_2:+78380361 Msa0427700:intron
AGTACATACATATTGTAAGG+TGG 0.690241 3_2:-78379798 None:intergenic
TGGGTCTGAAAAGTGGCCTG+AGG 0.703931 3_2:-78376887 None:intergenic
GCGTTTGATGATCTTCTCGG+CGG 0.720705 3_2:+78374987 Msa0427700:CDS
GGACATGGAATCGAAACCGG+AGG 0.725329 3_2:-78374907 None:intergenic
GCACCGATTCCCCAACACCG+TGG 0.760752 3_2:+78377061 Msa0427700:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAATGTAATTAATTTTGTAT+AGG - chr3_2:78378358-78378377 None:intergenic 10.0%
!!! AAAAGAGTTTTAAATAAAAA+AGG + chr3_2:78378462-78378481 Msa0427700:intron 10.0%
!!! AAAGAGTTTTAAATAAAAAA+GGG + chr3_2:78378463-78378482 Msa0427700:intron 10.0%
!!! TATTTATTTTCTAAAGTAGT+GGG - chr3_2:78374533-78374552 None:intergenic 15.0%
!!! TTATTTATTTTCTAAAGTAG+TGG - chr3_2:78374534-78374553 None:intergenic 15.0%
!! GAAAATAAATAAACAAGAAA+AGG + chr3_2:78374542-78374561 Msa0427700:five_prime_UTR 15.0%
!! TTAAGTTTAAACACAATTAT+CGG - chr3_2:78375567-78375586 None:intergenic 15.0%
!!! AAATGACAATTTAAAATTTG+AGG - chr3_2:78375621-78375640 None:intergenic 15.0%
!!! CTGATTCAAATATTTTAAAA+GGG - chr3_2:78376846-78376865 None:intergenic 15.0%
!! AAACATTATTTATACTAAAG+CGG + chr3_2:78378054-78378073 Msa0427700:intron 15.0%
!! CATTAATAATAAAAATGATG+GGG - chr3_2:78378110-78378129 None:intergenic 15.0%
!! GCATTAATAATAAAAATGAT+GGG - chr3_2:78378111-78378130 None:intergenic 15.0%
!! TGCATTAATAATAAAAATGA+TGG - chr3_2:78378112-78378131 None:intergenic 15.0%
!!! ATCATTTTTATTATTAATGC+AGG + chr3_2:78378111-78378130 Msa0427700:intron 15.0%
!! AAATAACATTAATGTTTCAT+TGG - chr3_2:78378224-78378243 None:intergenic 15.0%
!!! AAACTCTTTTAAAATAAAAG+TGG - chr3_2:78378452-78378471 None:intergenic 15.0%
!!! TTTAGTTCAAAATTGTAAAT+TGG - chr3_2:78379030-78379049 None:intergenic 15.0%
!!! TTTTTCTTTTTAACAACTAA+TGG - chr3_2:78379190-78379209 None:intergenic 15.0%
!! ATATAATAATAGATAGCATA+AGG - chr3_2:78379855-78379874 None:intergenic 15.0%
!! GAAAGAATATTAAAAAAATC+TGG - chr3_2:78379901-78379920 None:intergenic 15.0%
!! TTGAATGTAATCATATTTGT+TGG + chr3_2:78375376-78375395 Msa0427700:intron 20.0%
!!! AGTGCATTTTAGAATAATAA+CGG + chr3_2:78375540-78375559 Msa0427700:intron 20.0%
!! TAAGTTTAAACACAATTATC+GGG - chr3_2:78375566-78375585 None:intergenic 20.0%
!! TAATTGTGTTTAAACTTAAG+TGG + chr3_2:78375568-78375587 Msa0427700:intron 20.0%
!! TATTCAAGGATAAAAGAATA+TGG - chr3_2:78375703-78375722 None:intergenic 20.0%
!!! TATTCTTTTATCCTTGAATA+TGG + chr3_2:78375703-78375722 Msa0427700:intron 20.0%
!!! CTTTTTGCTTATTATGTATT+TGG + chr3_2:78375969-78375988 Msa0427700:intron 20.0%
!!! TCAGTGATTTAATTTTTGAA+CGG + chr3_2:78376277-78376296 Msa0427700:intron 20.0%
!! AGATTTGAATTGAAATCTTA+TGG + chr3_2:78376588-78376607 Msa0427700:intron 20.0%
!! AACTAATACGTGAAAAATAA+GGG - chr3_2:78376697-78376716 None:intergenic 20.0%
!!! GCTGATTCAAATATTTTAAA+AGG - chr3_2:78376847-78376866 None:intergenic 20.0%
!! ATTTACTAATCTCTTCTAAT+GGG - chr3_2:78376909-78376928 None:intergenic 20.0%
!! AATTTACTAATCTCTTCTAA+TGG - chr3_2:78376910-78376929 None:intergenic 20.0%
!! TTAGAATCAGATGAATATTT+AGG - chr3_2:78377222-78377241 None:intergenic 20.0%
!! AACCATCATTAAAATAAGAA+GGG - chr3_2:78377275-78377294 None:intergenic 20.0%
!! AAACCATCATTAAAATAAGA+AGG - chr3_2:78377276-78377295 None:intergenic 20.0%
!! AAATAATGTTTATCAAGACA+TGG - chr3_2:78378045-78378064 None:intergenic 20.0%
!!! TAAATAGTTAAGGGTATAAT+AGG - chr3_2:78378249-78378268 None:intergenic 20.0%
!! AGAGAGTAATAAATAGTTAA+GGG - chr3_2:78378258-78378277 None:intergenic 20.0%
!! AAGAGAGTAATAAATAGTTA+AGG - chr3_2:78378259-78378278 None:intergenic 20.0%
!! ACAAAATTGTCCTTAATAAA+TGG - chr3_2:78378312-78378331 None:intergenic 20.0%
!!! TTGTTATTGATAGTAAAAGA+AGG + chr3_2:78378981-78379000 Msa0427700:intron 20.0%
!!! ATATATTTTGAACATGCAAT+GGG - chr3_2:78379491-78379510 None:intergenic 20.0%
!!! TATATATTTTGAACATGCAA+TGG - chr3_2:78379492-78379511 None:intergenic 20.0%
!!! TGAAAGAGATAGTTTTTTAT+AGG - chr3_2:78379529-78379548 None:intergenic 20.0%
!!! TTTCTTTAAAAAAATGCTTG+AGG + chr3_2:78379875-78379894 Msa0427700:intron 20.0%
!! TATGGATAACATATAAATAG+TGG - chr3_2:78380051-78380070 None:intergenic 20.0%
!!! AATTTTAGTAATTACCTGAT+TGG - chr3_2:78380089-78380108 None:intergenic 20.0%
!! ATCAGGTAATTACTAAAATT+AGG + chr3_2:78380089-78380108 Msa0427700:intron 20.0%
!! TTAAAAACACTATAAGTTAC+TGG - chr3_2:78380276-78380295 None:intergenic 20.0%
!!! AGTAACTTATAGTGTTTTTA+AGG + chr3_2:78380275-78380294 Msa0427700:intron 20.0%
!! TTAGAAAGAAATGTATAGAA+AGG - chr3_2:78380554-78380573 None:intergenic 20.0%
!! TACTAGATAAGAAATGATAT+AGG - chr3_2:78380692-78380711 None:intergenic 20.0%
! TAAAGAGGTTTATCATAAAC+AGG - chr3_2:78374942-78374961 None:intergenic 25.0%
!!! GATTTTGATGATTTGATCAA+TGG + chr3_2:78375056-78375075 Msa0427700:CDS 25.0%
!! ATGATTTGATCAATGGATTT+GGG + chr3_2:78375063-78375082 Msa0427700:CDS 25.0%
!! TTTTCAATTCTTACAAGTGT+CGG - chr3_2:78375346-78375365 None:intergenic 25.0%
!! AAAAGCTTTTGGTGAAATAT+TGG + chr3_2:78375491-78375510 Msa0427700:intron 25.0%
!!! CATGTTTTATTATATAGTGC+AGG - chr3_2:78375744-78375763 None:intergenic 25.0%
! TAGTAGATCTTTCAAGAATA+TGG + chr3_2:78376041-78376060 Msa0427700:intron 25.0%
! AGTAGATCTTTCAAGAATAT+GGG + chr3_2:78376042-78376061 Msa0427700:intron 25.0%
! TAGACAACTGAAATAAATCT+TGG + chr3_2:78376210-78376229 Msa0427700:intron 25.0%
!!! TTTTTGAATTGGTTCATCAT+TGG + chr3_2:78376302-78376321 Msa0427700:intron 25.0%
! AATGTTCCTATTTGACTAAA+GGG - chr3_2:78376334-78376353 None:intergenic 25.0%
! AAATGTTCCTATTTGACTAA+AGG - chr3_2:78376335-78376354 None:intergenic 25.0%
!!! AGTGTTTTGTTTATAGCTTA+AGG + chr3_2:78376416-78376435 Msa0427700:intron 25.0%
!!! GTGTTTTGTTTATAGCTTAA+GGG + chr3_2:78376417-78376436 Msa0427700:intron 25.0%
! CTTCTTAAATAAAAATGCAC+AGG - chr3_2:78376481-78376500 None:intergenic 25.0%
!!! GTGCATTTTTATTTAAGAAG+TGG + chr3_2:78376481-78376500 Msa0427700:intron 25.0%
!!! AGTGGATTTATCATTTTATC+TGG + chr3_2:78376499-78376518 Msa0427700:intron 25.0%
! TTATCTGGTAGCTTATAAAA+CGG + chr3_2:78376514-78376533 Msa0427700:intron 25.0%
! CAATAACTTTCTTATTCCAT+AGG - chr3_2:78376541-78376560 None:intergenic 25.0%
! TTTAACAAACATGAAGAGAA+TGG + chr3_2:78376639-78376658 Msa0427700:intron 25.0%
! TTAACAAACATGAAGAGAAT+GGG + chr3_2:78376640-78376659 Msa0427700:intron 25.0%
! GGAATAAGAATAATCGAAAA+GGG + chr3_2:78376661-78376680 Msa0427700:intron 25.0%
! CAACTAATACGTGAAAAATA+AGG - chr3_2:78376698-78376717 None:intergenic 25.0%
! GATAGTTCATCAAATTCTAA+TGG + chr3_2:78376955-78376974 Msa0427700:CDS 25.0%
!! TTCAATTGATTCTTTATCTC+TGG - chr3_2:78377109-78377128 None:intergenic 25.0%
! ACCATCATTAAAATAAGAAG+GGG - chr3_2:78377274-78377293 None:intergenic 25.0%
! TCCAAAATATGAAGAAAAGT+TGG + chr3_2:78377326-78377345 Msa0427700:CDS 25.0%
!!! GATCATTTTCATTTTTTTGC+TGG - chr3_2:78377947-78377966 None:intergenic 25.0%
! TGTAAAGCGACTTATAATTT+GGG - chr3_2:78378198-78378217 None:intergenic 25.0%
! TTGTAAAGCGACTTATAATT+TGG - chr3_2:78378199-78378218 None:intergenic 25.0%
! TTGTCCTTAATAAATGGTAT+GGG - chr3_2:78378306-78378325 None:intergenic 25.0%
! ATTGTCCTTAATAAATGGTA+TGG - chr3_2:78378307-78378326 None:intergenic 25.0%
! TCCAAAACGTCATATAATTT+GGG + chr3_2:78378396-78378415 Msa0427700:intron 25.0%
! GAAAGATCATCAACAATATT+AGG - chr3_2:78378701-78378720 None:intergenic 25.0%
! CTTCAAACCATAAAAGAAAA+GGG - chr3_2:78378823-78378842 None:intergenic 25.0%
! TTTGATATCTTGAAAGTGAA+AGG + chr3_2:78379129-78379148 Msa0427700:intron 25.0%
! AACTGAAAGAAAGAAAGAAA+TGG - chr3_2:78379225-78379244 None:intergenic 25.0%
!! AACCATTACCTTTTTATACT+AGG + chr3_2:78379329-78379348 Msa0427700:intron 25.0%
!!! CTTTTCTTTTTATTTGTGAC+CGG + chr3_2:78379436-78379455 Msa0427700:intron 25.0%
!!! TTTTCTTTTTATTTGTGACC+GGG + chr3_2:78379437-78379456 Msa0427700:intron 25.0%
! AATCATCCAACATAAAGATT+AGG - chr3_2:78379598-78379617 None:intergenic 25.0%
! CTTAGTACATACATATTGTA+AGG - chr3_2:78379804-78379823 None:intergenic 25.0%
! ATATGTATGTACTAAGTACT+TGG + chr3_2:78379808-78379827 Msa0427700:intron 25.0%
! TGGAAAATGCTTATACAATA+TGG - chr3_2:78380069-78380088 None:intergenic 25.0%
!! CTAAAATTAGGTGCATTTTA+AGG + chr3_2:78380101-78380120 Msa0427700:intron 25.0%
!!! AACTTATAGTGTTTTTAAGG+TGG + chr3_2:78380278-78380297 Msa0427700:intron 25.0%
CGAATTCAGTAGCTAATAAA+CGG - chr3_2:78374722-78374741 None:intergenic 30.0%
CGTTTATTAGCTACTGAATT+CGG + chr3_2:78374720-78374739 Msa0427700:CDS 30.0%
! GATGATTTGATCAATGGATT+TGG + chr3_2:78375062-78375081 Msa0427700:CDS 30.0%
TTAATTAAGAAGTTACGCTC+AGG - chr3_2:78375123-78375142 None:intergenic 30.0%
!! ATGCTATATAGTTCTGATGA+AGG + chr3_2:78375464-78375483 Msa0427700:intron 30.0%
!! TGCTATATAGTTCTGATGAA+GGG + chr3_2:78375465-78375484 Msa0427700:intron 30.0%
! ATGAAGGGTTTAAAAGCTTT+TGG + chr3_2:78375480-78375499 Msa0427700:intron 30.0%
! GTGAAATATTGGTTAGAGAT+TGG + chr3_2:78375502-78375521 Msa0427700:intron 30.0%
TTGTGTTTAAACTTAAGTGG+TGG + chr3_2:78375571-78375590 Msa0427700:intron 30.0%
!! CTTTTAAGAGGCTTTCATAT+AGG + chr3_2:78375667-78375686 Msa0427700:intron 30.0%
GCAGAATATTATCTATTTGC+TGG + chr3_2:78375773-78375792 Msa0427700:intron 30.0%
AACACTAAGATCAATTTCGA+AGG - chr3_2:78375873-78375892 None:intergenic 30.0%
TCGAAATTGATCTTAGTGTT+TGG + chr3_2:78375873-78375892 Msa0427700:intron 30.0%
TTTGCGAAAAACTGTATGTT+TGG + chr3_2:78375997-78376016 Msa0427700:intron 30.0%
AGGATACAAACAAACACATA+TGG - chr3_2:78376091-78376110 None:intergenic 30.0%
! TTGTATCCTATCATTTTGTG+TGG + chr3_2:78376102-78376121 Msa0427700:intron 30.0%
AGATTACCACACAAAATGAT+AGG - chr3_2:78376111-78376130 None:intergenic 30.0%
CAAACATACCATTGTTTGAA+AGG + chr3_2:78376149-78376168 Msa0427700:intron 30.0%
ACAACTGAAATAAATCTTGG+AGG + chr3_2:78376213-78376232 Msa0427700:intron 30.0%
! TTTGAACGGCATTTTTGAAT+TGG + chr3_2:78376291-78376310 Msa0427700:intron 30.0%
CTCATGAAGTTATAATGTGT+AGG - chr3_2:78376398-78376417 None:intergenic 30.0%
TCTGTAATGCTTTGTCTATT+AGG + chr3_2:78376565-78376584 Msa0427700:intron 30.0%
GGGAATAAGAATAATCGAAA+AGG + chr3_2:78376660-78376679 Msa0427700:intron 30.0%
ATACGTGAAAAATAAGGGAT+CGG - chr3_2:78376692-78376711 None:intergenic 30.0%
TTAACTTATCGTTTCATCAC+AGG + chr3_2:78376746-78376765 Msa0427700:intron 30.0%
CAATTGAAAAATTGTCTGTG+AGG + chr3_2:78377121-78377140 Msa0427700:CDS 30.0%
TTAAAATAAGAAGGGGAAGT+AGG - chr3_2:78377267-78377286 None:intergenic 30.0%
!!! TCCCCTTCTTATTTTAATGA+TGG + chr3_2:78377270-78377289 Msa0427700:CDS 30.0%
! GCCAACTTTTCTTCATATTT+TGG - chr3_2:78377330-78377349 None:intergenic 30.0%
AGAGCAAAGAAGAATTGAAA+GGG + chr3_2:78377521-78377540 Msa0427700:CDS 30.0%
AAAGAAGAATTGAAAGGGAA+AGG + chr3_2:78377526-78377545 Msa0427700:CDS 30.0%
! GACTTATAATTTGTGACGTA+GGG - chr3_2:78378155-78378174 None:intergenic 30.0%
! TGACTTATAATTTGTGACGT+AGG - chr3_2:78378156-78378175 None:intergenic 30.0%
CTTTCCCATACCATTTATTA+AGG + chr3_2:78378299-78378318 Msa0427700:intron 30.0%
GTCCAAAACGTCATATAATT+TGG + chr3_2:78378395-78378414 Msa0427700:intron 30.0%
! TCCCAAATTATATGACGTTT+TGG - chr3_2:78378400-78378419 None:intergenic 30.0%
AAACGTCATATAATTTGGGA+CGG + chr3_2:78378400-78378419 Msa0427700:intron 30.0%
! ATGCAAAAAGTATGACTCTA+TGG - chr3_2:78378558-78378577 None:intergenic 30.0%
TTCTGTATCTCTTTACTTTC+AGG + chr3_2:78378589-78378608 Msa0427700:intron 30.0%
TGTGTCTTCAAACATAAAGA+GGG + chr3_2:78378664-78378683 Msa0427700:CDS 30.0%
TCAACAATATTAGGTGATGA+TGG - chr3_2:78378692-78378711 None:intergenic 30.0%
! GATGATCTTTCCTCAATTTT+TGG + chr3_2:78378710-78378729 Msa0427700:CDS 30.0%
GCAATATACTGTTATTGATG+TGG + chr3_2:78378748-78378767 Msa0427700:intron 30.0%
! TTTCCATCCCTTTTCTTTTA+TGG + chr3_2:78378813-78378832 Msa0427700:intron 30.0%
AAACCATAAAAGAAAAGGGA+TGG - chr3_2:78378819-78378838 None:intergenic 30.0%
GCTTCAAACCATAAAAGAAA+AGG - chr3_2:78378824-78378843 None:intergenic 30.0%
! ATTGATTCCTATAGAAGTGT+TGG + chr3_2:78379055-78379074 Msa0427700:intron 30.0%
!! TTGATTCCTATAGAAGTGTT+GGG + chr3_2:78379056-78379075 Msa0427700:intron 30.0%
! AGTGTTGGGATAAAGAATAA+AGG + chr3_2:78379070-78379089 Msa0427700:intron 30.0%
GTGTTGGGATAAAGAATAAA+GGG + chr3_2:78379071-78379090 Msa0427700:intron 30.0%
TGTTGGGATAAAGAATAAAG+GGG + chr3_2:78379072-78379091 Msa0427700:intron 30.0%
! TAACAACTAATGGATAGTGT+AGG - chr3_2:78379180-78379199 None:intergenic 30.0%
AGCATCTTAAAGAAAAGAGT+TGG - chr3_2:78379250-78379269 None:intergenic 30.0%
!!! CTTTTCTTTAAGATGCTAAC+TGG + chr3_2:78379253-78379272 Msa0427700:intron 30.0%
CATAGACAAACAATTTGAAG+AGG - chr3_2:78379301-78379320 None:intergenic 30.0%
TGCCTAGTATAAAAAGGTAA+TGG - chr3_2:78379334-78379353 None:intergenic 30.0%
! TACCTTTTTATACTAGGCAA+AGG + chr3_2:78379335-78379354 Msa0427700:intron 30.0%
CAACATAAAGATTAGGAAGT+TGG - chr3_2:78379591-78379610 None:intergenic 30.0%
CAACTTCCTAATCTTTATGT+TGG + chr3_2:78379589-78379608 Msa0427700:intron 30.0%
ATAAAAACCGTGCAAATTAG+CGG - chr3_2:78379651-78379670 None:intergenic 30.0%
!! TATCTACACATTGATTTCAG+AGG + chr3_2:78379702-78379721 Msa0427700:intron 30.0%
AGTACATACATATTGTAAGG+TGG - chr3_2:78379801-78379820 None:intergenic 30.0%
AGTGGAGGAATTTAAATTAC+TGG - chr3_2:78380033-78380052 None:intergenic 30.0%
GGATAACATATAAATAGTGG+AGG - chr3_2:78380048-78380067 None:intergenic 30.0%
! TGTATAAGCATTTTCCAATC+AGG + chr3_2:78380072-78380091 Msa0427700:intron 30.0%
TCAATTGACTGTGATTGATT+TGG - chr3_2:78380172-78380191 None:intergenic 30.0%
ATCACAGTCAATTGAAATGA+AGG + chr3_2:78380177-78380196 Msa0427700:intron 30.0%
! TTTCGGTGTACATTAAATCA+CGG - chr3_2:78380219-78380238 None:intergenic 30.0%
TGAATGATGATCAGGTATTA+TGG + chr3_2:78380350-78380369 Msa0427700:intron 30.0%
! ATAAGCCTTTTTAACAGTAG+CGG - chr3_2:78380422-78380441 None:intergenic 30.0%
! AATATATTTCTGCTGAAGAG+TGG - chr3_2:78380494-78380513 None:intergenic 30.0%
GCAGAAATATATTGCAGAAA+AGG + chr3_2:78380501-78380520 Msa0427700:CDS 30.0%
! AAAGGTTTTCGATCTACTAA+AGG + chr3_2:78380519-78380538 Msa0427700:CDS 30.0%
GCCAGTTGAAAATAATGATT+AGG + chr3_2:78380602-78380621 Msa0427700:intron 30.0%
! GCCTAATCATTATTTTCAAC+TGG - chr3_2:78380606-78380625 None:intergenic 30.0%
TATTCTCATGTAACTGAGTT+TGG + chr3_2:78380713-78380732 Msa0427700:intron 30.0%
! TTGGATGATGATGATGACAT+TGG - chr3_2:78374771-78374790 None:intergenic 35.0%
ATGTCATCATCATCATCCAA+AGG + chr3_2:78374771-78374790 Msa0427700:CDS 35.0%
!! AGAGGAAGTTTTGGTGAAAT+TGG - chr3_2:78374802-78374821 None:intergenic 35.0%
ATCATGATTGGAAGAGTGAA+AGG - chr3_2:78374850-78374869 None:intergenic 35.0%
GGGATTAGAATTGAAGAGAT+CGG - chr3_2:78374874-78374893 None:intergenic 35.0%
ATTCGGTCATTCGAAGAAAA+CGG + chr3_2:78375010-78375029 Msa0427700:CDS 35.0%
! TTTGCTTGCATTTGAAGCAA+CGG + chr3_2:78375224-78375243 Msa0427700:intron 35.0%
TATCAATAAACCTCAACCTC+AGG - chr3_2:78375289-78375308 None:intergenic 35.0%
! TATAGCATCGAAACTTCTGA+TGG - chr3_2:78375452-78375471 None:intergenic 35.0%
!! AAAATGCACTGATTCTCCAA+TGG - chr3_2:78375530-78375549 None:intergenic 35.0%
TGAAAGCCTCTTAAAAGACA+GGG - chr3_2:78375664-78375683 None:intergenic 35.0%
ATGAAAGCCTCTTAAAAGAC+AGG - chr3_2:78375665-78375684 None:intergenic 35.0%
CTTGTGAACTTCCATATTCA+AGG - chr3_2:78375717-78375736 None:intergenic 35.0%
GTTATCCTTGCAGTTAAACA+AGG + chr3_2:78375795-78375814 Msa0427700:intron 35.0%
! GTATTCCTTGTTTAACTGCA+AGG - chr3_2:78375803-78375822 None:intergenic 35.0%
TGCAGTTAAACAAGGAATAC+TGG + chr3_2:78375803-78375822 Msa0427700:intron 35.0%
TAGTGTTTGGATCTCAAAAG+TGG + chr3_2:78375886-78375905 Msa0427700:intron 35.0%
GATCTCAAAAGTGGCTATAA+TGG + chr3_2:78375895-78375914 Msa0427700:intron 35.0%
ATTTGCCGAACATTAAGAGT+TGG + chr3_2:78375919-78375938 Msa0427700:intron 35.0%
CCAAACCAACTCTTAATGTT+CGG - chr3_2:78375927-78375946 None:intergenic 35.0%
!! AACATTAAGAGTTGGTTTGG+AGG + chr3_2:78375927-78375946 Msa0427700:intron 35.0%
!! ACATTAAGAGTTGGTTTGGA+GGG + chr3_2:78375928-78375947 Msa0427700:intron 35.0%
ACCATTGTTTGAAAGGTAAC+AGG + chr3_2:78376156-78376175 Msa0427700:intron 35.0%
AAATCTTGGAGGAGTTTGTA+AGG + chr3_2:78376224-78376243 Msa0427700:intron 35.0%
AATCTTGGAGGAGTTTGTAA+GGG + chr3_2:78376225-78376244 Msa0427700:intron 35.0%
! TTGAATTGGTTCATCATTGG+TGG + chr3_2:78376305-78376324 Msa0427700:intron 35.0%
GTGTAGGTACAAGATTTCAT+TGG - chr3_2:78376382-78376401 None:intergenic 35.0%
! AAGGGTTCTTATTTCAGTAG+TGG + chr3_2:78376435-78376454 Msa0427700:intron 35.0%
!!! TAGTGGATTTTTCTTCTCAG+CGG + chr3_2:78376452-78376471 Msa0427700:intron 35.0%
TAGCTTATAAAACGGACCTA+TGG + chr3_2:78376522-78376541 Msa0427700:intron 35.0%
TTAAACGAAATGCGATGCTT+AGG - chr3_2:78376624-78376643 None:intergenic 35.0%
! TCTGATGATGAACCAATATC+AGG - chr3_2:78376778-78376797 None:intergenic 35.0%
! GATGATACTGATCCTTTTGA+TGG + chr3_2:78376988-78377007 Msa0427700:CDS 35.0%
GAATTTCCAAGTCCATCAAA+AGG - chr3_2:78377003-78377022 None:intergenic 35.0%
TTGTTATGTGTTCGTCTATC+AGG - chr3_2:78377150-78377169 None:intergenic 35.0%
GAATATTTAGGCATGCCATA+TGG - chr3_2:78377210-78377229 None:intergenic 35.0%
GATTCTAATAAACCAGTAGC+TGG + chr3_2:78377234-78377253 Msa0427700:CDS 35.0%
TCATGACGATATATGGCTAA+CGG + chr3_2:78377356-78377375 Msa0427700:CDS 35.0%
! GAAGTTGGTTGTGTAAAAAG+AGG - chr3_2:78377393-78377412 None:intergenic 35.0%
GAGAGCAAAGAAGAATTGAA+AGG + chr3_2:78377520-78377539 Msa0427700:CDS 35.0%
AAGAATTGAAAGGGAAAGGA+AGG + chr3_2:78377530-78377549 Msa0427700:CDS 35.0%
GGAAAGAGAAAATGAAAGAC+AGG + chr3_2:78377584-78377603 Msa0427700:CDS 35.0%
!! TAACTCTTGGCTTTGATGTT+TGG + chr3_2:78378078-78378097 Msa0427700:intron 35.0%
ATGTTTGAAGACACAGTTGT+AGG - chr3_2:78378659-78378678 None:intergenic 35.0%
CTGTGTCTTCAAACATAAAG+AGG + chr3_2:78378663-78378682 Msa0427700:CDS 35.0%
!! GATCTTTCCTCAATTTTTGG+AGG + chr3_2:78378713-78378732 Msa0427700:CDS 35.0%
!! TTTCCTCAATTTTTGGAGGT+AGG + chr3_2:78378717-78378736 Msa0427700:intron 35.0%
AATCCTACCTCCAAAAATTG+AGG - chr3_2:78378723-78378742 None:intergenic 35.0%
!! TTTTTGGAGGTAGGATTTTG+TGG + chr3_2:78378726-78378745 Msa0427700:intron 35.0%
GAGAATTTCAGGAAGTTGAA+GGG + chr3_2:78378858-78378877 Msa0427700:CDS 35.0%
AGAATTTCAGGAAGTTGAAG+GGG + chr3_2:78378859-78378878 Msa0427700:CDS 35.0%
AAGAAGGCAACCAATAGTAA+AGG + chr3_2:78378997-78379016 Msa0427700:intron 35.0%
CTTTATCCCAACACTTCTAT+AGG - chr3_2:78379065-78379084 None:intergenic 35.0%
TGCCTTTGCCTAGTATAAAA+AGG - chr3_2:78379340-78379359 None:intergenic 35.0%
! TTTATACTAGGCAAAGGCAT+TGG + chr3_2:78379341-78379360 Msa0427700:intron 35.0%
GTTGGATGATTGTGATTAGT+TGG + chr3_2:78379607-78379626 Msa0427700:intron 35.0%
AGATTCACGAAGGAACATTT+CGG - chr3_2:78380236-78380255 None:intergenic 35.0%
! CTATAAGTTACTGGAGTGTT+TGG - chr3_2:78380267-78380286 None:intergenic 35.0%
TACCTGATCATCATTCATGA+AGG - chr3_2:78380347-78380366 None:intergenic 35.0%
GGTTTCCACATAAGAATTTG+TGG + chr3_2:78380644-78380663 Msa0427700:intron 35.0%
TTTGGCCACAAATTCTTATG+TGG - chr3_2:78380652-78380671 None:intergenic 35.0%
!!! GTAACTGAGTTTGGTTTTCT+AGG + chr3_2:78380722-78380741 Msa0427700:intron 35.0%
AAATCGTTCATCGTGAGATC+TGG - chr3_2:78374696-78374715 None:intergenic 40.0%
! GAATTCGGTTTGAAACCTCA+AGG + chr3_2:78374735-78374754 Msa0427700:CDS 40.0%
GGTGAAATTGGAAGATCCTT+TGG - chr3_2:78374790-78374809 None:intergenic 40.0%
! GAAGTTGAGAGAGGAAGTTT+TGG - chr3_2:78374811-78374830 None:intergenic 40.0%
ATGTGAATCGAAGTTGAGAG+AGG - chr3_2:78374820-78374839 None:intergenic 40.0%
ATTGGAAGAGTGAAAGGATC+GGG - chr3_2:78374844-78374863 None:intergenic 40.0%
GATTGGAAGAGTGAAAGGAT+CGG - chr3_2:78374845-78374864 None:intergenic 40.0%
GAAGAGATCGGAATCATGAT+TGG - chr3_2:78374862-78374881 None:intergenic 40.0%
! ATCATAAACAGGCGAGTTGA+CGG - chr3_2:78374931-78374950 None:intergenic 40.0%
GAGAAGATCATCAAACGCAA+CGG - chr3_2:78374985-78375004 None:intergenic 40.0%
! GTTGCGTTTGATGATCTTCT+CGG + chr3_2:78374984-78375003 Msa0427700:CDS 40.0%
AAAACGGTGAAGAATGAGAG+AGG + chr3_2:78375026-78375045 Msa0427700:CDS 40.0%
! CATATTTGTTGGTGTCTTGC+CGG + chr3_2:78375387-78375406 Msa0427700:intron 40.0%
CTTCTGATGGAAGACATGTT+TGG - chr3_2:78375439-78375458 None:intergenic 40.0%
! AAGTGGTGGAGACACATAAT+TGG + chr3_2:78375585-78375604 Msa0427700:intron 40.0%
AGACAGGGAATGCATGATAT+CGG - chr3_2:78375649-78375668 None:intergenic 40.0%
! TGCATTCCCTGTCTTTTAAG+AGG + chr3_2:78375655-78375674 Msa0427700:intron 40.0%
TAATCTACTGACGACATTGC+AGG - chr3_2:78375829-78375848 None:intergenic 40.0%
! CCGAACATTAAGAGTTGGTT+TGG + chr3_2:78375924-78375943 Msa0427700:intron 40.0%
GCCTGTTACCTTTCAAACAA+TGG - chr3_2:78376160-78376179 None:intergenic 40.0%
ATCTTGGAGGAGTTTGTAAG+GGG + chr3_2:78376226-78376245 Msa0427700:intron 40.0%
TGGACTCCCTTTAGTCAAAT+AGG + chr3_2:78376325-78376344 Msa0427700:intron 40.0%
GATGAACCAATATCAGGAGT+GGG - chr3_2:78376772-78376791 None:intergenic 40.0%
TGATGAACCAATATCAGGAG+TGG - chr3_2:78376773-78376792 None:intergenic 40.0%
AAAAGGGTCTTCTGTTGCAT+TGG - chr3_2:78376830-78376849 None:intergenic 40.0%
! CTTCTAATGGGTCTGAAAAG+TGG - chr3_2:78376897-78376916 None:intergenic 40.0%
!!! ACTGATCCTTTTGATGGACT+TGG + chr3_2:78376994-78377013 Msa0427700:CDS 40.0%
! TACCAGCATTTTCATCAGAG+AGG + chr3_2:78377025-78377044 Msa0427700:CDS 40.0%
GATTCCTGTTGAACATGATC+AGG + chr3_2:78377170-78377189 Msa0427700:CDS 40.0%
AACTCCTGATCATGTTCAAC+AGG - chr3_2:78377177-78377196 None:intergenic 40.0%
!! GTTTTAGACCCGTCAATTCT+CGG + chr3_2:78377292-78377311 Msa0427700:CDS 40.0%
! TTTTAGACCCGTCAATTCTC+GGG + chr3_2:78377293-78377312 Msa0427700:CDS 40.0%
CCATATATCGTCATGATCTG+AGG - chr3_2:78377352-78377371 None:intergenic 40.0%
CCTCAGATCATGACGATATA+TGG + chr3_2:78377349-78377368 Msa0427700:CDS 40.0%
!! TCTGACTTGGGAATATGTAC+TGG - chr3_2:78377450-78377469 None:intergenic 40.0%
AGTACATATTCCCAAGTCAG+AGG + chr3_2:78377449-78377468 Msa0427700:CDS 40.0%
AGAACAACAGAGACTTGAGA+GGG + chr3_2:78377563-78377582 Msa0427700:CDS 40.0%
AGAAAATGAAAGACAGGCTG+TGG + chr3_2:78377590-78377609 Msa0427700:CDS 40.0%
ATACTAAAGCGGCTAACTCT+TGG + chr3_2:78378065-78378084 Msa0427700:intron 40.0%
! GTCATATAATTTGGGACGGA+GGG + chr3_2:78378404-78378423 Msa0427700:intron 40.0%
AAGACACAGTTGTAGGTTTC+TGG - chr3_2:78378652-78378671 None:intergenic 40.0%
GGAGAATTTCAGGAAGTTGA+AGG + chr3_2:78378857-78378876 Msa0427700:CDS 40.0%
TTGAAGGGGAAAGTGAAGAA+AGG + chr3_2:78378873-78378892 Msa0427700:CDS 40.0%
AGGCAACCAATAGTAAAGGA+AGG + chr3_2:78379001-78379020 Msa0427700:intron 40.0%
TGGTTGCCTTCCTTTACTAT+TGG - chr3_2:78379010-78379029 None:intergenic 40.0%
GAATAAAGGGGAGTTAGAGA+AGG + chr3_2:78379084-78379103 Msa0427700:intron 40.0%
! CATTGGCTGAGAAGAATCAA+CGG + chr3_2:78379358-78379377 Msa0427700:CDS 40.0%
ATTGGCTGAGAAGAATCAAC+GGG + chr3_2:78379359-78379378 Msa0427700:CDS 40.0%
!! TCTTTTTATTTGTGACCGGG+TGG + chr3_2:78379440-78379459 Msa0427700:intron 40.0%
CTGACACAGATGCATGTATT+GGG - chr3_2:78379560-78379579 None:intergenic 40.0%
!! ACATTGATTTCAGAGGCTTG+CGG + chr3_2:78379709-78379728 Msa0427700:intron 40.0%
AAGTACTTGGTATAATGCCC+AGG + chr3_2:78379821-78379840 Msa0427700:intron 40.0%
AGTACTTGGTATAATGCCCA+GGG + chr3_2:78379822-78379841 Msa0427700:intron 40.0%
AGCAATGAGGTGATTAGATG+AGG - chr3_2:78379929-78379948 None:intergenic 40.0%
TACAACATTGTCCACTGAGT+AGG - chr3_2:78379952-78379971 None:intergenic 40.0%
TACTACAGTGCTCTGTAAAG+AGG - chr3_2:78380136-78380155 None:intergenic 40.0%
CTCCTTCATGAATGATGATC+AGG + chr3_2:78380342-78380361 Msa0427700:intron 40.0%
TATTATGGCCTGAATGTGGT+TGG + chr3_2:78380365-78380384 Msa0427700:CDS 40.0%
TACAGCCGCTACTGTTAAAA+AGG + chr3_2:78380414-78380433 Msa0427700:CDS 40.0%
AACCCACATGTAGATAACAG+TGG - chr3_2:78380628-78380647 None:intergenic 40.0%
GTGCATTACATGCACACATT+TGG - chr3_2:78380670-78380689 None:intergenic 40.0%
CAGTTAGAGGAAGAGAAGGA+GGG - chr3_2:78374632-78374651 None:intergenic 45.0%
TCAGCAGTTAGAGGAAGAGA+AGG - chr3_2:78374636-78374655 None:intergenic 45.0%
TCATCGTGAGATCTGGTGAA+CGG - chr3_2:78374689-78374708 None:intergenic 45.0%
ATTGGTGCAGATTTGCCTTG+AGG - chr3_2:78374753-78374772 None:intergenic 45.0%
! GTGAAGAATGAGAGAGGTGT+CGG + chr3_2:78375032-78375051 Msa0427700:CDS 45.0%
TCAGTAACCACACCTTTGAC+GGG - chr3_2:78375099-78375118 None:intergenic 45.0%
CTCAGTAACCACACCTTTGA+CGG - chr3_2:78375100-78375119 None:intergenic 45.0%
GGTAGCGTATGATCTAGTGA+AGG + chr3_2:78375245-78375264 Msa0427700:intron 45.0%
ATGTAGTGAGACTGAACCTG+AGG + chr3_2:78375270-78375289 Msa0427700:intron 45.0%
! TGGTTAGAGATTGGCTCCAT+TGG + chr3_2:78375511-78375530 Msa0427700:intron 45.0%
! GGAGTTTGTAAGGGGTACAT+AGG + chr3_2:78376234-78376253 Msa0427700:intron 45.0%
TGAGGATGAATCAGTTGGAG+CGG - chr3_2:78376872-78376891 None:intergenic 45.0%
GTCCTCTCTGATGAAAATGC+TGG - chr3_2:78377030-78377049 None:intergenic 45.0%
! TCAGAGAGGACTAGCAGATA+TGG + chr3_2:78377039-78377058 Msa0427700:CDS 45.0%
TTGTGTTTGACCACGGTGTT+GGG - chr3_2:78377074-78377093 None:intergenic 45.0%
CCTGAACTTGTGTTTGACCA+CGG - chr3_2:78377081-78377100 None:intergenic 45.0%
GGTCAAACACAAGTTCAGGT+TGG + chr3_2:78377082-78377101 Msa0427700:CDS 45.0%
GAGTTTCATCAAGCGCCATA+TGG + chr3_2:78377192-78377211 Msa0427700:CDS 45.0%
AAGAAGGGGAAGTAGGCATT+TGG - chr3_2:78377260-78377279 None:intergenic 45.0%
ATATCTGCCCGAGAATTGAC+GGG - chr3_2:78377303-78377322 None:intergenic 45.0%
CATATCTGCCCGAGAATTGA+CGG - chr3_2:78377304-78377323 None:intergenic 45.0%
! TTGGGAATATGTACTGGTCG+AGG - chr3_2:78377444-78377463 None:intergenic 45.0%
AAACCATGAGCAGCAGCAAA+AGG + chr3_2:78377485-78377504 Msa0427700:CDS 45.0%
GAGAACAACAGAGACTTGAG+AGG + chr3_2:78377562-78377581 Msa0427700:CDS 45.0%
TGCTGCTGAGGCAAAGAAAA+GGG + chr3_2:78377764-78377783 Msa0427700:CDS 45.0%
GGCAAAGAAAAGGGCTGAAA+AGG + chr3_2:78377773-78377792 Msa0427700:CDS 45.0%
TTGAATCGTTCTTCAGCGTG+AGG + chr3_2:78377967-78377986 Msa0427700:CDS 45.0%
TGAATCGTTCTTCAGCGTGA+GGG + chr3_2:78377968-78377987 Msa0427700:CDS 45.0%
ACAGAAGAGTTAGACCTAGG+AGG - chr3_2:78378017-78378036 None:intergenic 45.0%
CTCACAGAAGAGTTAGACCT+AGG - chr3_2:78378020-78378039 None:intergenic 45.0%
! CGTCATATAATTTGGGACGG+AGG + chr3_2:78378403-78378422 Msa0427700:intron 45.0%
TGATGCACAATTTCAGCCAG+AGG + chr3_2:78378622-78378641 Msa0427700:CDS 45.0%
!! GTAGGTTTCTGGTTTACCTC+TGG - chr3_2:78378641-78378660 None:intergenic 45.0%
TCCTGAAATTCTCCAGCTGA+GGG - chr3_2:78378851-78378870 None:intergenic 45.0%
TTCCTGAAATTCTCCAGCTG+AGG - chr3_2:78378852-78378871 None:intergenic 45.0%
AGAAAGGCGAAAAGCCAGAT+TGG + chr3_2:78378889-78378908 Msa0427700:CDS 45.0%
AGGAGAGAGTCTCTTCTCTA+AGG - chr3_2:78379160-78379179 None:intergenic 45.0%
TCTGCTCTCTTTGAGTCTGT+AGG - chr3_2:78379386-78379405 None:intergenic 45.0%
CCTGACACAGATGCATGTAT+TGG - chr3_2:78379561-78379580 None:intergenic 45.0%
CCAATACATGCATCTGTGTC+AGG + chr3_2:78379558-78379577 Msa0427700:intron 45.0%
GTGCAAATTAGCGGAGAACT+CGG - chr3_2:78379642-78379661 None:intergenic 45.0%
! GAGTTCTCCGCTAATTTGCA+CGG + chr3_2:78379641-78379660 Msa0427700:intron 45.0%
!! TGGACTTTGAAGTTAAGCGC+TGG + chr3_2:78379738-78379757 Msa0427700:CDS 45.0%
!! GGACTTTGAAGTTAAGCGCT+GGG + chr3_2:78379739-78379758 Msa0427700:CDS 45.0%
TCATTCGCTCTGCTCATTAC+AGG + chr3_2:78380002-78380021 Msa0427700:intron 45.0%
CAGGTATTATGGCCTGAATG+TGG + chr3_2:78380361-78380380 Msa0427700:intron 45.0%
TCCTGATAAAGTGCAGCAGA+AGG + chr3_2:78380465-78380484 Msa0427700:CDS 45.0%
CCTGATAAAGTGCAGCAGAA+GGG + chr3_2:78380466-78380485 Msa0427700:CDS 45.0%
AGGCCACTGTTATCTACATG+TGG + chr3_2:78380622-78380641 Msa0427700:intron 45.0%
GGCCACTGTTATCTACATGT+GGG + chr3_2:78380623-78380642 Msa0427700:intron 45.0%
GCAGTTAGAGGAAGAGAAGG+AGG - chr3_2:78374633-78374652 None:intergenic 50.0%
TTTCTTCCGTCTACGGTGGT+CGG - chr3_2:78374663-78374682 None:intergenic 50.0%
ACGGTGGTTTCTTCCGTCTA+CGG - chr3_2:78374670-78374689 None:intergenic 50.0%
GACGGACATGGAATCGAAAC+CGG - chr3_2:78374913-78374932 None:intergenic 50.0%
CCTCTTTACGACGACGATGA+CGG + chr3_2:78374954-78374973 Msa0427700:CDS 50.0%
! GCGTTTGATGATCTTCTCGG+CGG + chr3_2:78374987-78375006 Msa0427700:CDS 50.0%
! GATGATCTTCTCGGCGGATT+CGG + chr3_2:78374993-78375012 Msa0427700:CDS 50.0%
TGAGACTGAACCTGAGGTTG+AGG + chr3_2:78375276-78375295 Msa0427700:intron 50.0%
CACGTGTCAGTGTCAAACAC+CGG - chr3_2:78375409-78375428 None:intergenic 50.0%
CAGGGAATGCATGATATCGG+TGG - chr3_2:78375646-78375665 None:intergenic 50.0%
!! GAGTTGGTTTGGAGGGAAAG+AGG + chr3_2:78375935-78375954 Msa0427700:intron 50.0%
AGGGTCTTCTGTTGCATTGG+AGG - chr3_2:78376827-78376846 None:intergenic 50.0%
! GCTCCAACTGATTCATCCTC+AGG + chr3_2:78376871-78376890 Msa0427700:CDS 50.0%
TGGCCTGAGGATGAATCAGT+TGG - chr3_2:78376877-78376896 None:intergenic 50.0%
! TGTGTTTGACCACGGTGTTG+GGG - chr3_2:78377073-78377092 None:intergenic 50.0%
CTTGTGTTTGACCACGGTGT+TGG - chr3_2:78377075-78377094 None:intergenic 50.0%
CCGTGGTCAAACACAAGTTC+AGG + chr3_2:78377078-78377097 Msa0427700:CDS 50.0%
! ATATGTACTGGTCGAGGAGG+AGG - chr3_2:78377438-78377457 None:intergenic 50.0%
! GGAATATGTACTGGTCGAGG+AGG - chr3_2:78377441-78377460 None:intergenic 50.0%
CTGCTTCTCTCCTCTGACTT+GGG - chr3_2:78377462-78377481 None:intergenic 50.0%
ACTGCTTCTCTCCTCTGACT+TGG - chr3_2:78377463-78377482 None:intergenic 50.0%
! TCTCCTTTTGCTGCTGCTCA+TGG - chr3_2:78377491-78377510 None:intergenic 50.0%
TGAGCAGCAGCAAAAGGAGA+TGG + chr3_2:78377491-78377510 Msa0427700:CDS 50.0%
AAGCTAGAGTGCGTGCTGAA+AGG + chr3_2:78377700-78377719 Msa0427700:CDS 50.0%
AGCTAGAGTGCGTGCTGAAA+GGG + chr3_2:78377701-78377720 Msa0427700:CDS 50.0%
ACAAGCTGAAGCCCGTGAAA+GGG + chr3_2:78377740-78377759 Msa0427700:CDS 50.0%
CTGCTGCTGAGGCAAAGAAA+AGG + chr3_2:78377763-78377782 Msa0427700:CDS 50.0%
! TAAAGCAGAACGTGCTGCTG+TGG + chr3_2:78377869-78377888 Msa0427700:CDS 50.0%
! AGAACGTGCTGCTGTGGAAA+GGG + chr3_2:78377875-78377894 Msa0427700:CDS 50.0%
GAATCGTTCTTCAGCGTGAG+GGG + chr3_2:78377969-78377988 Msa0427700:CDS 50.0%
! TTTGAAGCATCTCCCTCAGC+TGG + chr3_2:78378836-78378855 Msa0427700:intron 50.0%
TCCCTCAGCTGGAGAATTTC+AGG + chr3_2:78378847-78378866 Msa0427700:CDS 50.0%
CAGATTGGAACGCCTTCAGA+GGG + chr3_2:78378904-78378923 Msa0427700:CDS 50.0%
CTGTATGAGCAGAAACCACC+CGG - chr3_2:78379458-78379477 None:intergenic 50.0%
AGCATAAGGCAGCAAACCCT+GGG - chr3_2:78379841-78379860 None:intergenic 50.0%
TAGCATAAGGCAGCAAACCC+TGG - chr3_2:78379842-78379861 None:intergenic 50.0%
ACCTCATTGCTCCTACTCAG+TGG + chr3_2:78379938-78379957 Msa0427700:intron 50.0%
TCCACTGAGTAGGAGCAATG+AGG - chr3_2:78379942-78379961 None:intergenic 50.0%
GGCTGCTTCAAGATTCACGA+AGG - chr3_2:78380246-78380265 None:intergenic 50.0%
CCCTTCTGCTGCACTTTATC+AGG - chr3_2:78380469-78380488 None:intergenic 50.0%
GTCGGTGGATCAGCAGTTAG+AGG - chr3_2:78374645-78374664 None:intergenic 55.0%
GTGGTTTCTTCCGTCTACGG+TGG - chr3_2:78374667-78374686 None:intergenic 55.0%
TCGTGAGATCTGGTGAACGG+TGG - chr3_2:78374686-78374705 None:intergenic 55.0%
GGACATGGAATCGAAACCGG+AGG - chr3_2:78374910-78374929 None:intergenic 55.0%
! AACAGGCGAGTTGACGGACA+TGG - chr3_2:78374925-78374944 None:intergenic 55.0%
CCGTCATCGTCGTCGTAAAG+AGG - chr3_2:78374957-78374976 None:intergenic 55.0%
GGAACAAGTCCTCCCGTCAA+AGG + chr3_2:78375084-78375103 Msa0427700:CDS 55.0%
AAGTCCTCCCGTCAAAGGTG+TGG + chr3_2:78375089-78375108 Msa0427700:intron 55.0%
GTAACCACACCTTTGACGGG+AGG - chr3_2:78375096-78375115 None:intergenic 55.0%
!! CAAGTGTCGGCGTGTGAGTA+TGG - chr3_2:78375333-78375352 None:intergenic 55.0%
CACAGGCCCACTCCTGATAT+TGG + chr3_2:78376763-78376782 Msa0427700:intron 55.0%
TGGGTCTGAAAAGTGGCCTG+AGG - chr3_2:78376890-78376909 None:intergenic 55.0%
! TGACCACGGTGTTGGGGAAT+CGG - chr3_2:78377067-78377086 None:intergenic 55.0%
GTAGGCATTTGGCCAGCTAC+TGG - chr3_2:78377249-78377268 None:intergenic 55.0%
!! GAAGGTGGTGGAGCAGAAGT+TGG - chr3_2:78377408-78377427 None:intergenic 55.0%
GCAGCAGCAAAAGGAGATGG+AGG + chr3_2:78377494-78377513 Msa0427700:CDS 55.0%
AGCTCGCCAAAGAGCTGAGA+AGG + chr3_2:78377653-78377672 Msa0427700:CDS 55.0%
CAGCAGCCTTCTCAGCTCTT+TGG - chr3_2:78377662-78377681 None:intergenic 55.0%
TGAAAGGGCCGCTGTTCAGA+GGG + chr3_2:78377716-78377735 Msa0427700:CDS 55.0%
AGCTTGTGCCCTCTGAACAG+CGG - chr3_2:78377727-78377746 None:intergenic 55.0%
CACAAGCTGAAGCCCGTGAA+AGG + chr3_2:78377739-78377758 Msa0427700:CDS 55.0%
AAAGGCTGCTGCAGGGGAAA+AGG + chr3_2:78377791-78377810 Msa0427700:CDS 55.0%
GAGAAAGAGCTGCAGCTGCA+AGG + chr3_2:78377826-78377845 Msa0427700:CDS 55.0%
! CAGAACGTGCTGCTGTGGAA+AGG + chr3_2:78377874-78377893 Msa0427700:CDS 55.0%
AGCAGCTGCAGCTCTTTCTC+GGG - chr3_2:78377913-78377932 None:intergenic 55.0%
CAGCAGCTGCAGCTCTTTCT+CGG - chr3_2:78377914-78377933 None:intergenic 55.0%
GAGTTAGACCTAGGAGGCCT+TGG - chr3_2:78378011-78378030 None:intergenic 55.0%
!! CCTCTGAAGGCGTTCCAATC+TGG - chr3_2:78378906-78378925 None:intergenic 55.0%
CCAGATTGGAACGCCTTCAG+AGG + chr3_2:78378903-78378922 Msa0427700:CDS 55.0%
TCAGAGGCTTGCGGAAACAC+TGG + chr3_2:78379718-78379737 Msa0427700:intron 55.0%
!! AAGTTAAGCGCTGGGCTGCA+GGG + chr3_2:78379747-78379766 Msa0427700:CDS 55.0%
ATGGCCTGAATGTGGTTGGC+AGG + chr3_2:78380369-78380388 Msa0427700:CDS 55.0%
ACTGCCTGCCAACCACATTC+AGG - chr3_2:78380376-78380395 None:intergenic 55.0%
GATCCACCGACCACCGTAGA+CGG + chr3_2:78374654-78374673 Msa0427700:five_prime_UTR 60.0%
!! CCGGAGGTGCTACGAGAGAT+GGG - chr3_2:78374894-78374913 None:intergenic 60.0%
CCCATCTCTCGTAGCACCTC+CGG + chr3_2:78374891-78374910 Msa0427700:CDS 60.0%
!! ACCGGAGGTGCTACGAGAGA+TGG - chr3_2:78374895-78374914 None:intergenic 60.0%
! GGAGGTGGTCTTGAAGGTGG+TGG - chr3_2:78377420-78377439 None:intergenic 60.0%
! GGAGGAGGTGGTCTTGAAGG+TGG - chr3_2:78377423-78377442 None:intergenic 60.0%
! CGAGGAGGAGGTGGTCTTGA+AGG - chr3_2:78377426-78377445 None:intergenic 60.0%
! TGTACTGGTCGAGGAGGAGG+TGG - chr3_2:78377435-78377454 None:intergenic 60.0%
CTGAAAGGGCCGCTGTTCAG+AGG + chr3_2:78377715-78377734 Msa0427700:CDS 60.0%
CTCAGCAGCAGCCCTTTCAC+GGG - chr3_2:78377754-78377773 None:intergenic 60.0%
CCTCAGCAGCAGCCCTTTCA+CGG - chr3_2:78377755-78377774 None:intergenic 60.0%
AGGGCTGAAAAGGCTGCTGC+AGG + chr3_2:78377783-78377802 Msa0427700:CDS 60.0%
GGGCTGAAAAGGCTGCTGCA+GGG + chr3_2:78377784-78377803 Msa0427700:CDS 60.0%
GGCTGAAAAGGCTGCTGCAG+GGG + chr3_2:78377785-78377804 Msa0427700:CDS 60.0%
TGTGGAAAGGGCTGCTGCAG+AGG + chr3_2:78377887-78377906 Msa0427700:CDS 60.0%
CGTTCTTCAGCGTGAGGGGA+CGG + chr3_2:78377973-78377992 Msa0427700:CDS 60.0%
GTTCTTCAGCGTGAGGGGAC+GGG + chr3_2:78377974-78377993 Msa0427700:CDS 60.0%
! AGGAGGCCTTGGAGCGCTAT+TGG - chr3_2:78378000-78378019 None:intergenic 60.0%
ATAGCGCTCCAAGGCCTCCT+AGG + chr3_2:78378000-78378019 Msa0427700:CDS 60.0%
!! GAAGTTAAGCGCTGGGCTGC+AGG + chr3_2:78379746-78379765 Msa0427700:CDS 60.0%
CTTCCGTCTACGGTGGTCGG+TGG - chr3_2:78374660-78374679 None:intergenic 65.0%
!! GCACCGATTCCCCAACACCG+TGG + chr3_2:78377061-78377080 Msa0427700:CDS 65.0%
CCGTGAAAGGGCTGCTGCTG+AGG + chr3_2:78377752-78377771 Msa0427700:CDS 65.0%
GACGGGCCAATAGCGCTCCA+AGG + chr3_2:78377991-78378010 Msa0427700:CDS 65.0%
GGAACGCCTTCAGAGGGCTC+AGG + chr3_2:78378910-78378929 Msa0427700:CDS 65.0%
CGCTGGGCTGCAGGGAAAGA+GGG + chr3_2:78379755-78379774 Msa0427700:CDS 65.0%
GCTGGGCTGCAGGGAAAGAG+GGG + chr3_2:78379756-78379775 Msa0427700:CDS 65.0%
CGCGCTCCTGAGCCCTCTGA+AGG - chr3_2:78378919-78378938 None:intergenic 70.0%
! TCAGAGGGCTCAGGAGCGCG+CGG + chr3_2:78378919-78378938 Msa0427700:CDS 70.0%
GCGCTGGGCTGCAGGGAAAG+AGG + chr3_2:78379754-78379773 Msa0427700:CDS 70.0%
Chromosome Type Strat End Strand Name
chr3_2 gene 78374526 78380767 78374526 ID=Msa0427700;Name=Msa0427700
chr3_2 mRNA 78374526 78380767 78374526 ID=Msa0427700-mRNA-1;Parent=Msa0427700;Name=Msa0427700-mRNA-1;_AED=0.17;_eAED=0.17;_QI=179|0.85|0.87|0.87|1|1|8|0|748
chr3_2 exon 78374526 78375105 78374526 ID=Msa0427700-mRNA-1:exon:20692;Parent=Msa0427700-mRNA-1
chr3_2 exon 78376768 78378034 78376768 ID=Msa0427700-mRNA-1:exon:20693;Parent=Msa0427700-mRNA-1
chr3_2 exon 78378611 78378734 78378611 ID=Msa0427700-mRNA-1:exon:20694;Parent=Msa0427700-mRNA-1
chr3_2 exon 78378843 78378940 78378843 ID=Msa0427700-mRNA-1:exon:20695;Parent=Msa0427700-mRNA-1
chr3_2 exon 78379351 78379416 78379351 ID=Msa0427700-mRNA-1:exon:20696;Parent=Msa0427700-mRNA-1
chr3_2 exon 78379722 78379811 78379722 ID=Msa0427700-mRNA-1:exon:20697;Parent=Msa0427700-mRNA-1
chr3_2 exon 78380364 78380540 78380364 ID=Msa0427700-mRNA-1:exon:20698;Parent=Msa0427700-mRNA-1
chr3_2 exon 78380744 78380767 78380744 ID=Msa0427700-mRNA-1:exon:20699;Parent=Msa0427700-mRNA-1
chr3_2 five_prime_UTR 78374526 78374704 78374526 ID=Msa0427700-mRNA-1:five_prime_utr;Parent=Msa0427700-mRNA-1
chr3_2 CDS 78374705 78375105 78374705 ID=Msa0427700-mRNA-1:cds;Parent=Msa0427700-mRNA-1
chr3_2 CDS 78376768 78378034 78376768 ID=Msa0427700-mRNA-1:cds;Parent=Msa0427700-mRNA-1
chr3_2 CDS 78378611 78378734 78378611 ID=Msa0427700-mRNA-1:cds;Parent=Msa0427700-mRNA-1
chr3_2 CDS 78378843 78378940 78378843 ID=Msa0427700-mRNA-1:cds;Parent=Msa0427700-mRNA-1
chr3_2 CDS 78379351 78379416 78379351 ID=Msa0427700-mRNA-1:cds;Parent=Msa0427700-mRNA-1
chr3_2 CDS 78379722 78379811 78379722 ID=Msa0427700-mRNA-1:cds;Parent=Msa0427700-mRNA-1
chr3_2 CDS 78380364 78380540 78380364 ID=Msa0427700-mRNA-1:cds;Parent=Msa0427700-mRNA-1
chr3_2 CDS 78380744 78380767 78380744 ID=Msa0427700-mRNA-1:cds;Parent=Msa0427700-mRNA-1
Gene Sequence

>Msa0427700

ATGAACGATTTCGACCGTTTATTAGCTACTGAATTCGGTTTGAAACCTCAAGGCAAATCTGCACCAATGTCATCATCATCATCCAAAGGATCTTCCAATTTCACCAAAACTTCCTCTCTCAACTTCGATTCACATTCCCGATCCTTTCACTCTTCCAATCATGATTCCGATCTCTTCAATTCTAATCCCATCTCTCGTAGCACCTCCGGTTTCGATTCCATGTCCGTCAACTCGCCTGTTTATGATAAACCTCTTTACGACGACGATGACGGAAGTGCCGTTGCGTTTGATGATCTTCTCGGCGGATTCGGTCATTCGAAGAAAACGGTGAAGAATGAGAGAGGTGTCGGTGATTTTGATGATTTGATCAATGGATTTGGGAACAAGTCCTCCCGTCAAAGGCCCACTCCTGATATTGGTTCATCATCAGAATCTACTTTCAGTGCATCTAAAACAACCTCCAATGCAACAGAAGACCCTTTTAAAATATTTGAATCAGCTTCCGCTCCAACTGATTCATCCTCAGGCCACTTTTCAGACCCATTAGAAGAGATTAGTAAATTTACTAGTTCTAAAAGCACAAAAAATGATAGTTCATCAAATTCTAATGGTGCAGTATATGATGATACTGATCCTTTTGATGGACTTGGAAATTCAGTACCAGCATTTTCATCAGAGAGGACTAGCAGATATGGCACCGATTCCCCAACACCGTGGTCAAACACAAGTTCAGGTTGGACCAGAGATAAAGAATCAATTGAAAAATTGTCTGTGAGGAGTCCTGATAGACGAACACATAACAAGATTCCTGTTGAACATGATCAGGAGTTTCATCAAGCGCCATATGGCATGCCTAAATATTCATCTGATTCTAATAAACCAGTAGCTGGCCAAATGCCTACTTCCCCTTCTTATTTTAATGATGGTTTTAGACCCGTCAATTCTCGGGCAGATATGTCTCCAAAATATGAAGAAAAGTTGGCCTCAGATCATGACGATATATGGCTAACGGTATCAGAGATTCCTCTTTTTACACAACCAACTTCTGCTCCACCACCTTCAAGACCACCTCCTCCTCGACCAGTACATATTCCCAAGTCAGAGGAGAGAAGCAGTTCAAACCATGAGCAGCAGCAAAAGGAGATGGAGGATAGAGAGCAAAGAAGAATTGAAAGGGAAAGGAAGGAGAAAGAAAGAGAACAACAGAGACTTGAGAGGGAAAGAGAAAATGAAAGACAGGCTGTGGAAAGAGCTACTAGAGAAGCACGTGAAAGAGCAGCTGCTGAAGCTCGCCAAAGAGCTGAGAAGGCTGCTGTTGAGAAAGCTAATGCAGAAGCTAGAGTGCGTGCTGAAAGGGCCGCTGTTCAGAGGGCACAAGCTGAAGCCCGTGAAAGGGCTGCTGCTGAGGCAAAGAAAAGGGCTGAAAAGGCTGCTGCAGGGGAAAAGGTGAGAGAAGCACGAGAAAGAGCTGCAGCTGCAAGGACTGAAGCTGAAGCACGAGTTAAAGCAGAACGTGCTGCTGTGGAAAGGGCTGCTGCAGAGGCCCGAGAAAGAGCTGCAGCTGCTGCAAGAATGTACCAGCAAAAAAATGAAAATGATCTTGAATCGTTCTTCAGCGTGAGGGGACGGGCCAATAGCGCTCCAAGGCCTCCTAGGTCTAACTCTTCTGATTCAGTTTTTGATGCACAATTTCAGCCAGAGGTAAACCAGAAACCTACAACTGTGTCTTCAAACATAAAGAGGGCACCATCATCACCTAATATTGTTGATGATCTTTCCTCAATTTTTGGAGCATCTCCCTCAGCTGGAGAATTTCAGGAAGTTGAAGGGGAAAGTGAAGAAAGGCGAAAAGCCAGATTGGAACGCCTTCAGAGGGCTCAGGAGCGCGCGGCAAAGGCATTGGCTGAGAAGAATCAACGGGACCTACAGACTCAAAGAGAGCAGAATGAGAGACATAGGCTTGCGGAAACACTGGACTTTGAAGTTAAGCGCTGGGCTGCAGGGAAAGAGGGGAACTTGCGTGCTCTACTCTCCACCTTACAATATGTATTATGGCCTGAATGTGGTTGGCAGGCAGTTTCTTTGACTGATCTTATTACAGCCGCTACTGTTAAAAAGGCTTATAGAAAAGCTACACTGTGCATTCATCCTGATAAAGTGCAGCAGAAGGGTGCCACTCTTCAGCAGAAATATATTGCAGAAAAGGTTTTCGATCTACTAAAGGACGTTCTGCCTCTGCAGATTTAG
Protein sequence

>Msa0427700

MNDFDRLLATEFGLKPQGKSAPMSSSSSKGSSNFTKTSSLNFDSHSRSFHSSNHDSDLFNSNPISRSTSGFDSMSVNSPVYDKPLYDDDDGSAVAFDDLLGGFGHSKKTVKNERGVGDFDDLINGFGNKSSRQRPTPDIGSSSESTFSASKTTSNATEDPFKIFESASAPTDSSSGHFSDPLEEISKFTSSKSTKNDSSSNSNGAVYDDTDPFDGLGNSVPAFSSERTSRYGTDSPTPWSNTSSGWTRDKESIEKLSVRSPDRRTHNKIPVEHDQEFHQAPYGMPKYSSDSNKPVAGQMPTSPSYFNDGFRPVNSRADMSPKYEEKLASDHDDIWLTVSEIPLFTQPTSAPPPSRPPPPRPVHIPKSEERSSSNHEQQQKEMEDREQRRIERERKEKEREQQRLERERENERQAVERATREARERAAAEARQRAEKAAVEKANAEARVRAERAAVQRAQAEARERAAAEAKKRAEKAAAGEKVREARERAAAARTEAEARVKAERAAVERAAAEARERAAAAARMYQQKNENDLESFFSVRGRANSAPRPPRSNSSDSVFDAQFQPEVNQKPTTVSSNIKRAPSSPNIVDDLSSIFGASPSAGEFQEVEGESEERRKARLERLQRAQERAAKALAEKNQRDLQTQREQNERHRLAETLDFEVKRWAAGKEGNLRALLSTLQYVLWPECGWQAVSLTDLITAATVKKAYRKATLCIHPDKVQQKGATLQQKYIAEKVFDLLKDVLPLQI*