Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0284550 | AFK49645.1 | 97.447 | 235 | 6 | 0 | 1 | 235 | 1 | 235 | 3.46e-170 | 478 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0284550 | sp|Q93ZH2|NFYA3_ARATH | 47.568 | 185 | 89 | 4 | 26 | 206 | 129 | 309 | 5.80e-41 | 145 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0284550 | I3TAV3 | 97.447 | 235 | 6 | 0 | 1 | 235 | 1 | 235 | 1.65e-170 | 478 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0284550 | TF | NF-YA |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0195820 | Msa0284550 | 0.819329 | 1.229763e-52 | -8.615850e-47 |
| Msa0202880 | Msa0284550 | 0.889910 | 1.586561e-73 | -8.615850e-47 |
| Msa0245980 | Msa0284550 | 0.998317 | 1.129252e-261 | -8.615850e-47 |
| Msa0284550 | Msa0344690 | -0.800513 | 1.391502e-48 | -8.615850e-47 |
| Msa0284550 | Msa0443290 | 0.825984 | 3.478996e-54 | -8.615850e-47 |
| Msa0284550 | Msa0490870 | 0.804515 | 2.081467e-49 | -8.615850e-47 |
| Msa0284550 | Msa1303200 | -0.805399 | 1.360472e-49 | -8.615850e-47 |
| Msa0284550 | Msa1394540 | 0.801318 | 9.526628e-49 | -8.615850e-47 |
| Msa0284550 | Msa1466810 | 0.809303 | 2.023069e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0284550 | MtrunA17_Chr2g0300261 | 97.447 | 235 | 6 | 0 | 1 | 235 | 1 | 235 | 3.18e-174 | 478 |
| Msa0284550 | MtrunA17_Chr8g0343451 | 46.907 | 194 | 92 | 6 | 11 | 204 | 103 | 285 | 2.22e-44 | 151 |
| Msa0284550 | MtrunA17_Chr2g0329811 | 51.007 | 149 | 61 | 4 | 6 | 145 | 108 | 253 | 7.94e-39 | 137 |
| Msa0284550 | MtrunA17_Chr3g0103391 | 53.731 | 134 | 45 | 5 | 23 | 156 | 123 | 239 | 5.42e-36 | 129 |
| Msa0284550 | MtrunA17_Chr8g0352251 | 54.472 | 123 | 49 | 3 | 33 | 153 | 114 | 231 | 2.84e-35 | 127 |
| Msa0284550 | MtrunA17_Chr2g0292411 | 53.774 | 106 | 46 | 2 | 59 | 162 | 95 | 199 | 2.63e-30 | 111 |
| Msa0284550 | MtrunA17_Chr1g0177091 | 45.775 | 142 | 61 | 3 | 5 | 145 | 105 | 231 | 1.38e-29 | 112 |
| Msa0284550 | MtrunA17_Chr7g0267581 | 54.630 | 108 | 33 | 4 | 32 | 138 | 134 | 226 | 1.87e-28 | 109 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0284550 | AT1G72830.1 | 47.568 | 185 | 89 | 4 | 26 | 206 | 129 | 309 | 5.90e-42 | 145 |
| Msa0284550 | AT1G72830.2 | 47.312 | 186 | 89 | 5 | 26 | 206 | 129 | 310 | 3.66e-40 | 141 |
| Msa0284550 | AT1G54160.1 | 68.367 | 98 | 29 | 1 | 47 | 142 | 145 | 242 | 1.74e-38 | 136 |
| Msa0284550 | AT1G17590.3 | 61.947 | 113 | 32 | 3 | 32 | 142 | 133 | 236 | 2.03e-38 | 136 |
| Msa0284550 | AT1G17590.2 | 61.947 | 113 | 32 | 3 | 32 | 142 | 133 | 236 | 2.03e-38 | 136 |
| Msa0284550 | AT1G17590.4 | 61.947 | 113 | 32 | 3 | 32 | 142 | 133 | 236 | 2.03e-38 | 136 |
| Msa0284550 | AT1G17590.1 | 61.947 | 113 | 32 | 3 | 32 | 142 | 133 | 236 | 2.03e-38 | 136 |
| Msa0284550 | AT3G14020.2 | 62.626 | 99 | 37 | 0 | 48 | 146 | 141 | 239 | 3.00e-35 | 127 |
| Msa0284550 | AT3G14020.1 | 62.626 | 99 | 37 | 0 | 48 | 146 | 141 | 239 | 3.00e-35 | 127 |
| Msa0284550 | AT1G30500.2 | 56.364 | 110 | 44 | 3 | 32 | 141 | 58 | 163 | 7.25e-34 | 120 |
| Msa0284550 | AT1G30500.1 | 56.364 | 110 | 40 | 3 | 32 | 141 | 58 | 159 | 8.59e-34 | 120 |
| Msa0284550 | AT2G34720.1 | 51.613 | 124 | 53 | 4 | 19 | 138 | 38 | 158 | 1.62e-33 | 120 |
| Msa0284550 | AT2G34720.2 | 52.586 | 116 | 50 | 3 | 25 | 138 | 11 | 123 | 3.85e-33 | 118 |
| Msa0284550 | AT2G34720.3 | 52.586 | 116 | 50 | 3 | 25 | 138 | 11 | 123 | 3.85e-33 | 118 |
| Msa0284550 | AT5G12840.4 | 53.271 | 107 | 45 | 2 | 33 | 139 | 131 | 232 | 3.01e-32 | 119 |
| Msa0284550 | AT5G12840.2 | 53.271 | 107 | 45 | 2 | 33 | 139 | 131 | 232 | 3.01e-32 | 119 |
| Msa0284550 | AT5G12840.5 | 53.271 | 107 | 45 | 2 | 33 | 139 | 132 | 233 | 3.45e-32 | 118 |
| Msa0284550 | AT5G12840.3 | 53.271 | 107 | 45 | 2 | 33 | 139 | 132 | 233 | 3.45e-32 | 118 |
| Msa0284550 | AT5G12840.1 | 53.271 | 107 | 45 | 2 | 33 | 139 | 132 | 233 | 3.45e-32 | 118 |
| Msa0284550 | AT3G20910.1 | 49.587 | 121 | 54 | 4 | 33 | 151 | 126 | 241 | 1.79e-30 | 115 |
| Msa0284550 | AT1G72830.3 | 42.162 | 185 | 74 | 5 | 26 | 206 | 129 | 284 | 3.07e-28 | 109 |
| Msa0284550 | AT5G06510.4 | 64.474 | 76 | 22 | 2 | 64 | 137 | 23 | 95 | 5.17e-25 | 97.4 |
| Msa0284550 | AT5G06510.7 | 64.474 | 76 | 22 | 2 | 64 | 137 | 23 | 95 | 5.17e-25 | 97.4 |
| Msa0284550 | AT5G06510.3 | 64.474 | 76 | 22 | 2 | 64 | 137 | 69 | 141 | 1.30e-24 | 97.4 |
| Msa0284550 | AT5G06510.1 | 64.474 | 76 | 22 | 2 | 64 | 137 | 118 | 190 | 1.54e-24 | 98.6 |
| Msa0284550 | AT5G06510.5 | 64.474 | 76 | 22 | 2 | 64 | 137 | 118 | 190 | 1.54e-24 | 98.6 |
| Msa0284550 | AT5G06510.2 | 64.474 | 76 | 22 | 2 | 64 | 137 | 118 | 190 | 1.54e-24 | 98.6 |
| Msa0284550 | AT5G06510.6 | 64.474 | 76 | 22 | 2 | 64 | 137 | 118 | 190 | 1.54e-24 | 98.6 |
| Msa0284550 | AT3G05690.1 | 49.123 | 114 | 37 | 4 | 29 | 137 | 102 | 199 | 5.27e-24 | 97.8 |
| Msa0284550 | AT3G05690.2 | 49.123 | 114 | 37 | 4 | 29 | 137 | 139 | 236 | 9.86e-24 | 97.4 |
Find 69 sgRNAs with CRISPR-Local
Find 170 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TATTGCTTACACTTGTCTTT+TGG | 0.230753 | 2_3:-22700667 | Msa0284550:three_prime_UTR |
| ACTTGTTGTTGGGTTGAAAT+TGG | 0.261072 | 2_3:+22703578 | None:intergenic |
| CCATCATTTGAGGCAACATT+TGG | 0.267754 | 2_3:+22701713 | None:intergenic |
| TTTGTCGCTGGTTCACATTC+TGG | 0.272296 | 2_3:-22701127 | Msa0284550:CDS |
| CAGCCAGAGCACATGTTTCT+TGG | 0.297173 | 2_3:-22700968 | Msa0284550:CDS |
| TGGCTTAATCACTTCGGTTT+CGG | 0.310800 | 2_3:-22700826 | Msa0284550:three_prime_UTR |
| CATGCTTTGAATAGAGTTAG+AGG | 0.318785 | 2_3:-22701202 | Msa0284550:CDS |
| TACATGTGAAAGTAATAAAA+AGG | 0.321877 | 2_3:+22700701 | None:intergenic |
| CATCATTTGAGGCAACATTT+GGG | 0.363234 | 2_3:+22701714 | None:intergenic |
| CTTGTTGTTGGGTTGAAATT+GGG | 0.377337 | 2_3:+22703579 | None:intergenic |
| GAGCAATTGAACTCGGTATC+AGG | 0.378172 | 2_3:+22702028 | None:intergenic |
| AGAAGTGTTGTACTTGTTGT+TGG | 0.382513 | 2_3:+22703567 | None:intergenic |
| CCAAATGTTGCCTCAAATGA+TGG | 0.389646 | 2_3:-22701713 | Msa0284550:CDS |
| CCTAAAACTGAAACTGTTGC+TGG | 0.404257 | 2_3:+22700991 | None:intergenic |
| TTGAATAGAGTTAGAGGATC+TGG | 0.407085 | 2_3:-22701196 | Msa0284550:CDS |
| GATCAATATATAATTTGCTT+TGG | 0.413092 | 2_3:-22700602 | Msa0284550:three_prime_UTR |
| TGCAGTGGAGGACTCGCATT+TGG | 0.418965 | 2_3:-22700911 | Msa0284550:CDS |
| GAGAGAGTACCTTTGGGATC+TGG | 0.421698 | 2_3:+22703511 | None:intergenic |
| CTCTATTCAAAGCATGTTTG+TGG | 0.437986 | 2_3:+22701209 | None:intergenic |
| GCTGTTTGGTGCTTAGAAAT+CGG | 0.443184 | 2_3:+22701170 | None:intergenic |
| TGGCGAGATTCGTGAAGATA+TGG | 0.445004 | 2_3:+22701229 | None:intergenic |
| GAAGTGTTGTACTTGTTGTT+GGG | 0.454031 | 2_3:+22703568 | None:intergenic |
| CCACTTGATCTTGCACAAGA+TGG | 0.459081 | 2_3:-22701664 | Msa0284550:CDS |
| ATTAGACTCTGAAAGCTGTT+TGG | 0.461146 | 2_3:+22701156 | None:intergenic |
| AATTTGCTTTGGTTTGAGCT+TGG | 0.466625 | 2_3:-22700591 | Msa0284550:three_prime_UTR |
| GATGGAAGATATGTTATCTC+TGG | 0.468775 | 2_3:+22701042 | None:intergenic |
| CACTTGATCTTGCACAAGAT+GGG | 0.471002 | 2_3:-22701663 | Msa0284550:CDS |
| AGCAACGCGCTTCTGTTGTC+CGG | 0.486636 | 2_3:-22700880 | Msa0284550:CDS |
| TCTTGGAAACTCTCCAAACA+TGG | 0.497227 | 2_3:-22700951 | Msa0284550:CDS |
| CCCTGACAACAATTATCAAA+AGG | 0.501288 | 2_3:-22701104 | Msa0284550:CDS |
| TCGGACAGGCAAATCATCCT+TGG | 0.503377 | 2_3:-22700846 | Msa0284550:three_prime_UTR |
| CGGTGATAGTTTCATCGGAC+AGG | 0.509040 | 2_3:-22700860 | Msa0284550:exon |
| TTTCCAAGAAACATGTGCTC+TGG | 0.515589 | 2_3:+22700965 | None:intergenic |
| AAGATCTAAAATTTAAGTAA+TGG | 0.520847 | 2_3:-22702097 | Msa0284550:five_prime_UTR |
| AGTAATGGCTGTGTTGTTGA+AGG | 0.525778 | 2_3:-22702082 | Msa0284550:five_prime_UTR |
| GGATGATTCAAAGAGAGAAA+AGG | 0.526180 | 2_3:+22702049 | None:intergenic |
| TTGTCCGGTGATAGTTTCAT+CGG | 0.526378 | 2_3:-22700865 | Msa0284550:exon |
| CATCCTTGGCTTAATCACTT+CGG | 0.544205 | 2_3:-22700832 | Msa0284550:three_prime_UTR |
| AAAGGAAGATCCTTCAGAGA+TGG | 0.545453 | 2_3:-22701086 | Msa0284550:CDS |
| CAAATGTTGCCTCAAATGAT+GGG | 0.557136 | 2_3:-22701712 | Msa0284550:CDS |
| AGTTGATCATAATCACTCAA+TGG | 0.558578 | 2_3:-22702002 | Msa0284550:intron |
| TGATGACTTTCCATCTCTGA+AGG | 0.561649 | 2_3:+22701076 | None:intergenic |
| CCGATCGGAACAACTTGTGA+TGG | 0.564255 | 2_3:+22701024 | None:intergenic |
| GATGCTAATCCCATCATTTG+AGG | 0.565976 | 2_3:+22701703 | None:intergenic |
| AAACACTTACAACAGCATGC+GGG | 0.571388 | 2_3:+22701838 | None:intergenic |
| ATCATTTGAGGCAACATTTG+GGG | 0.571616 | 2_3:+22701715 | None:intergenic |
| AAGTGGTAATGCAACTCTAG+TGG | 0.571902 | 2_3:+22701681 | None:intergenic |
| CTTGGAAACTCTCCAAACAT+GGG | 0.573579 | 2_3:-22700950 | Msa0284550:CDS |
| TCTAATGCAGAATTTGTCGC+TGG | 0.580969 | 2_3:-22701139 | Msa0284550:CDS |
| GGAGGAGCACCACAATGCAG+TGG | 0.581886 | 2_3:-22700926 | Msa0284550:CDS |
| AGTGGAGGACTCGCATTTGG+CGG | 0.584913 | 2_3:-22700908 | Msa0284550:CDS |
| CCATCTTGTGCAAGATCAAG+TGG | 0.592935 | 2_3:+22701664 | None:intergenic |
| CCATCACAAGTTGTTCCGAT+CGG | 0.593385 | 2_3:-22701024 | Msa0284550:CDS |
| TTGGAAACTCTCCAAACATG+GGG | 0.601862 | 2_3:-22700949 | Msa0284550:CDS |
| AATACCATGGTATACTGAGA+AGG | 0.610675 | 2_3:-22701618 | Msa0284550:CDS |
| AACACTTACAACAGCATGCG+GGG | 0.613676 | 2_3:+22701839 | None:intergenic |
| AACTTGTGAGCAATTGAACT+CGG | 0.618219 | 2_3:+22702021 | None:intergenic |
| GGAGCACCACAATGCAGTGG+AGG | 0.620324 | 2_3:-22700923 | Msa0284550:CDS |
| CTGTCCGATGAAACTATCAC+CGG | 0.624235 | 2_3:+22700861 | None:intergenic |
| AAAACACTTACAACAGCATG+CGG | 0.630340 | 2_3:+22701837 | None:intergenic |
| GTCAATGCAAAACAATACCA+TGG | 0.632585 | 2_3:-22701631 | Msa0284550:CDS |
| GGAAACTCTCCAAACATGGG+GGG | 0.636980 | 2_3:-22700947 | Msa0284550:CDS |
| TCATACTTGCCAGATCCCAA+AGG | 0.645047 | 2_3:-22703520 | Msa0284550:intron |
| AAACCGAAGTGATTAAGCCA+AGG | 0.645864 | 2_3:+22700829 | None:intergenic |
| AATAGAGTTAGAGGATCTGG+TGG | 0.657703 | 2_3:-22701193 | Msa0284550:CDS |
| GTCGCCTTCTCAGTATACCA+TGG | 0.679853 | 2_3:+22701614 | None:intergenic |
| GCGAGTCCTCCACTGCATTG+TGG | 0.686798 | 2_3:+22700917 | None:intergenic |
| TGGAAACTCTCCAAACATGG+GGG | 0.690180 | 2_3:-22700948 | Msa0284550:CDS |
| ACAATCACGAGCTAAGCTTG+AGG | 0.693616 | 2_3:-22701593 | Msa0284550:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAACAAAAAAGGAAAAA+AGG | + | chr2_3:22700717-22700736 | None:intergenic | 15.0% |
| !! | TTTCTTAGAAAACATAAATT+AGG | + | chr2_3:22701494-22701513 | None:intergenic | 15.0% |
| !!! | GTTTAAAATGTTTTATTGTT+TGG | - | chr2_3:22701591-22701610 | Msa0284550:CDS | 15.0% |
| !! | AAACTGAAAAAAATTGATTA+AGG | - | chr2_3:22701730-22701749 | Msa0284550:intron | 15.0% |
| !!! | AAGATCTAAAATTTAAGTAA+TGG | - | chr2_3:22702051-22702070 | Msa0284550:CDS | 15.0% |
| !!! | TTCTTTTTTAGCATGATTTA+AGG | - | chr2_3:22700792-22700811 | Msa0284550:three_prime_UTR | 20.0% |
| !!! | CATGATTTAAGGTTAAATTT+TGG | - | chr2_3:22700803-22700822 | Msa0284550:three_prime_UTR | 20.0% |
| !! | AATCATAAACAATCCATATT+TGG | - | chr2_3:22701093-22701112 | Msa0284550:CDS | 20.0% |
| !! | ATCATAAACAATCCATATTT+GGG | - | chr2_3:22701094-22701113 | Msa0284550:CDS | 20.0% |
| !!! | AGTTTCAATTTTTTAGTACT+TGG | - | chr2_3:22701142-22701161 | Msa0284550:CDS | 20.0% |
| !! | AATTCTCAAAATCTTACAAA+GGG | + | chr2_3:22701305-22701324 | None:intergenic | 20.0% |
| !! | ATGAATTAGTGTGAATATTA+TGG | - | chr2_3:22701416-22701435 | Msa0284550:intron | 20.0% |
| !!! | TTTTTTTCAGTTTACTAACA+AGG | + | chr2_3:22701723-22701742 | None:intergenic | 20.0% |
| !! | AGTAAACTATTCAATAAAAC+AGG | + | chr2_3:22702879-22702898 | None:intergenic | 20.0% |
| !! | TACATGTGAAAGTAATAAAA+AGG | + | chr2_3:22703450-22703469 | None:intergenic | 20.0% |
| !!! | CTTTCACATGTATTTTAAAT+TGG | - | chr2_3:22703458-22703477 | Msa0284550:intron | 20.0% |
| !!! | GATCAATATATAATTTGCTT+TGG | - | chr2_3:22703546-22703565 | Msa0284550:five_prime_UTR | 20.0% |
| ! | AAAAAGGAAAAAAGGTAAAG+AGG | + | chr2_3:22700709-22700728 | None:intergenic | 25.0% |
| !!! | GTCTGTTTTGTTTTTTTTTG+AGG | - | chr2_3:22700887-22700906 | Msa0284550:CDS | 25.0% |
| ! | TAGTTCATTCATACTAGAAT+TGG | + | chr2_3:22700931-22700950 | None:intergenic | 25.0% |
| ! | TCCTAGCATATTTGATTATT+TGG | - | chr2_3:22700984-22701003 | Msa0284550:CDS | 25.0% |
| ! | TCATAAACAATCCATATTTG+GGG | - | chr2_3:22701095-22701114 | Msa0284550:CDS | 25.0% |
| ! | AATATTGAACTCAAGTTTCA+AGG | - | chr2_3:22701185-22701204 | Msa0284550:CDS | 25.0% |
| !! | TATGGATTGAATACAAACTA+AGG | + | chr2_3:22701251-22701270 | None:intergenic | 25.0% |
| ! | CAATTCTCAAAATCTTACAA+AGG | + | chr2_3:22701306-22701325 | None:intergenic | 25.0% |
| !!! | TGTAAGATTTTGAGAATTGT+TGG | - | chr2_3:22701307-22701326 | Msa0284550:intron | 25.0% |
| ! | TACAACAATGTATGTGAAAT+TGG | - | chr2_3:22701392-22701411 | Msa0284550:intron | 25.0% |
| ! | GTATAGATATGTTCGTAATT+TGG | - | chr2_3:22701799-22701818 | Msa0284550:intron | 25.0% |
| !! | CACAAAATATGTGTTTCTAA+AGG | + | chr2_3:22701905-22701924 | None:intergenic | 25.0% |
| !! | AAGTAATGTAAAAGCATAAG+AGG | + | chr2_3:22701968-22701987 | None:intergenic | 25.0% |
| ! | TTCTATGTTTGTGATATTCT+TGG | - | chr2_3:22701990-22702009 | Msa0284550:intron | 25.0% |
| ! | TTATACAAAATCATTCTCTC+AGG | - | chr2_3:22702026-22702045 | Msa0284550:CDS | 25.0% |
| !!! | TGTTTTGCATTGACATAAAT+GGG | + | chr2_3:22702511-22702530 | None:intergenic | 25.0% |
| !!! | TTGTTTTGCATTGACATAAA+TGG | + | chr2_3:22702512-22702531 | None:intergenic | 25.0% |
| ! | AAAAAGTAAAGTTCAAAGCA+TGG | + | chr2_3:22702617-22702636 | None:intergenic | 25.0% |
| !!! | GAACTTTACTTTTTTCATTC+AGG | - | chr2_3:22702623-22702642 | Msa0284550:intron | 25.0% |
| !! | CTACTAGTTTATATGCTATA+AGG | + | chr2_3:22702650-22702669 | None:intergenic | 25.0% |
| !! | TGATTTTATATAACCATCCA+AGG | - | chr2_3:22702742-22702761 | Msa0284550:intron | 25.0% |
| !! | GATTTTATATAACCATCCAA+GGG | - | chr2_3:22702743-22702762 | Msa0284550:intron | 25.0% |
| ! | AATTTCACCATGTAATAACA+TGG | + | chr2_3:22702833-22702852 | None:intergenic | 25.0% |
| !!! | TGGTGAAATTGTTATTTGAA+AGG | - | chr2_3:22702843-22702862 | Msa0284550:intron | 25.0% |
| !!! | GGTGAAATTGTTATTTGAAA+GGG | - | chr2_3:22702844-22702863 | Msa0284550:intron | 25.0% |
| !! | GAATGAACTAGTTCTTTTGT+TGG | - | chr2_3:22700941-22700960 | Msa0284550:CDS | 30.0% |
| GCCAAATAATCAAATATGCT+AGG | + | chr2_3:22700988-22701007 | None:intergenic | 30.0% | |
| TAAGATCAATGAGAAGTGAA+AGG | - | chr2_3:22701068-22701087 | Msa0284550:CDS | 30.0% | |
| CATAAACAATCCATATTTGG+GGG | - | chr2_3:22701096-22701115 | Msa0284550:CDS | 30.0% | |
| ! | GTTTGACGATCCATTTTATA+TGG | - | chr2_3:22701219-22701238 | Msa0284550:CDS | 30.0% |
| GTGTGAATATTATGGAGTTA+AGG | - | chr2_3:22701424-22701443 | Msa0284550:intron | 30.0% | |
| AGAAAACATAAATTAGGCCA+TGG | + | chr2_3:22701488-22701507 | None:intergenic | 30.0% | |
| AATACTTGAGAAGTAGTGAT+TGG | + | chr2_3:22701662-22701681 | None:intergenic | 30.0% | |
| !!! | GTTCGTAATTTGGTGTTTTA+TGG | - | chr2_3:22701809-22701828 | Msa0284550:intron | 30.0% |
| !!! | ACAAAAGCTTTTTCGCATTT+AGG | + | chr2_3:22701862-22701881 | None:intergenic | 30.0% |
| AGTTGATCATAATCACTCAA+TGG | - | chr2_3:22702146-22702165 | Msa0284550:intron | 30.0% | |
| GTATGTGAAACTTCTGTATT+TGG | - | chr2_3:22702168-22702187 | Msa0284550:intron | 30.0% | |
| AACTACTTCGTTACTAAAAG+TGG | + | chr2_3:22702207-22702226 | None:intergenic | 30.0% | |
| GCAAAAATTGGATCACTATA+AGG | + | chr2_3:22702269-22702288 | None:intergenic | 30.0% | |
| ! | TATAGTGATCCAATTTTTGC+TGG | - | chr2_3:22702269-22702288 | Msa0284550:intron | 30.0% |
| !! | TATTAGCACTTTTTGATGCT+TGG | - | chr2_3:22702366-22702385 | Msa0284550:intron | 30.0% |
| TTTCTCGTTACAATCTCAAA+AGG | + | chr2_3:22702718-22702737 | None:intergenic | 30.0% | |
| CAAAATGCCATGTTATTACA+TGG | - | chr2_3:22702823-22702842 | Msa0284550:intron | 30.0% | |
| !! | CCTTTTGATAATTGTTGTCA+GGG | + | chr2_3:22703047-22703066 | None:intergenic | 30.0% |
| !! | TCCTTTTGATAATTGTTGTC+AGG | + | chr2_3:22703048-22703067 | None:intergenic | 30.0% |
| !!! | TATGTTATCTCTGGTTTTTG+AGG | + | chr2_3:22703100-22703119 | None:intergenic | 30.0% |
| ! | TATTGCTTACACTTGTCTTT+TGG | - | chr2_3:22703481-22703500 | Msa0284550:intron | 30.0% |
| !!! | GTTTCTGCATGAAACTTTTT+TGG | - | chr2_3:22703518-22703537 | Msa0284550:intron | 30.0% |
| !! | ACTTGTTGTTGGGTTGAAAT+TGG | + | chr2_3:22700573-22700592 | None:intergenic | 35.0% |
| !! | GAAGTGTTGTACTTGTTGTT+GGG | + | chr2_3:22700583-22700602 | None:intergenic | 35.0% |
| !! | AGAAGTGTTGTACTTGTTGT+TGG | + | chr2_3:22700584-22700603 | None:intergenic | 35.0% |
| ! | TGGTGTTTTTCATTTGCATG+TGG | - | chr2_3:22700823-22700842 | Msa0284550:three_prime_UTR | 35.0% |
| ! | TTGTTGGTTGAGATTTGGAA+AGG | - | chr2_3:22700855-22700874 | Msa0284550:three_prime_UTR | 35.0% |
| ! | GACGATCCATTTTATATGGT+TGG | - | chr2_3:22701223-22701242 | Msa0284550:CDS | 35.0% |
| ! | AAGGCACCAACCATATAAAA+TGG | + | chr2_3:22701232-22701251 | None:intergenic | 35.0% |
| TCACTACTTCTCAAGTATTC+AGG | - | chr2_3:22701663-22701682 | Msa0284550:CDS | 35.0% | |
| AGGAAATAGACAAAGAGTGA+AGG | + | chr2_3:22701759-22701778 | None:intergenic | 35.0% | |
| TCAAATCAGCTAGTCACTTA+AGG | + | chr2_3:22701779-22701798 | None:intergenic | 35.0% | |
| ! | GTGTTTCTAAAGGATGTGAA+GGG | + | chr2_3:22701895-22701914 | None:intergenic | 35.0% |
| ! | TGTGTTTCTAAAGGATGTGA+AGG | + | chr2_3:22701896-22701915 | None:intergenic | 35.0% |
| GGATGATTCAAAGAGAGAAA+AGG | + | chr2_3:22702102-22702121 | None:intergenic | 35.0% | |
| AACTTGTGAGCAATTGAACT+CGG | + | chr2_3:22702130-22702149 | None:intergenic | 35.0% | |
| ACTAACGAACCAGCAAAAAT+TGG | + | chr2_3:22702281-22702300 | None:intergenic | 35.0% | |
| AAAACACTTACAACAGCATG+CGG | + | chr2_3:22702314-22702333 | None:intergenic | 35.0% | |
| ! | ATCATTTGAGGCAACATTTG+GGG | + | chr2_3:22702436-22702455 | None:intergenic | 35.0% |
| ! | CATCATTTGAGGCAACATTT+GGG | + | chr2_3:22702437-22702456 | None:intergenic | 35.0% |
| CAAATGTTGCCTCAAATGAT+GGG | - | chr2_3:22702436-22702455 | Msa0284550:intron | 35.0% | |
| GTCAATGCAAAACAATACCA+TGG | - | chr2_3:22702517-22702536 | Msa0284550:intron | 35.0% | |
| AATACCATGGTATACTGAGA+AGG | - | chr2_3:22702530-22702549 | Msa0284550:intron | 35.0% | |
| AATTCTACCACTTGTCATCA+CGG | + | chr2_3:22702784-22702803 | None:intergenic | 35.0% | |
| CTCTATTCAAAGCATGTTTG+TGG | + | chr2_3:22702942-22702961 | None:intergenic | 35.0% | |
| ! | CATGCTTTGAATAGAGTTAG+AGG | - | chr2_3:22702946-22702965 | Msa0284550:intron | 35.0% |
| TTGAATAGAGTTAGAGGATC+TGG | - | chr2_3:22702952-22702971 | Msa0284550:intron | 35.0% | |
| ! | ATTAGACTCTGAAAGCTGTT+TGG | + | chr2_3:22702995-22703014 | None:intergenic | 35.0% |
| CCCTGACAACAATTATCAAA+AGG | - | chr2_3:22703044-22703063 | Msa0284550:intron | 35.0% | |
| GATGGAAGATATGTTATCTC+TGG | + | chr2_3:22703109-22703128 | None:intergenic | 35.0% | |
| !! | TCGGTGTTTTCATGGTAATT+TGG | - | chr2_3:22703341-22703360 | Msa0284550:intron | 35.0% |
| !! | AATTTGCTTTGGTTTGAGCT+TGG | - | chr2_3:22703557-22703576 | Msa0284550:five_prime_UTR | 35.0% |
| TCATTTGCATGTGGAGTTTG+AGG | - | chr2_3:22700832-22700851 | Msa0284550:three_prime_UTR | 40.0% | |
| ! | TGAGGTTGTTGGTTGAGATT+TGG | - | chr2_3:22700850-22700869 | Msa0284550:three_prime_UTR | 40.0% |
| AGTCAGCTGACATCTTCATA+TGG | + | chr2_3:22701269-22701288 | None:intergenic | 40.0% | |
| ! | TCTAATCGAGTTGTTCTCCA+TGG | - | chr2_3:22701468-22701487 | Msa0284550:intron | 40.0% |
| CTACTTCTCAAGTATTCAGG+CGG | - | chr2_3:22701666-22701685 | Msa0284550:CDS | 40.0% | |
| TACTTCTCAAGTATTCAGGC+GGG | - | chr2_3:22701667-22701686 | Msa0284550:CDS | 40.0% | |
| ! | TTTCTAAAGGATGTGAAGGG+AGG | + | chr2_3:22701892-22701911 | None:intergenic | 40.0% |
| ! | AGTAATGGCTGTGTTGTTGA+AGG | - | chr2_3:22702066-22702085 | Msa0284550:exon | 40.0% |
| ! | AGTTATTGTCGTCCGTTTTC+AGG | - | chr2_3:22702223-22702242 | Msa0284550:intron | 40.0% |
| AAACACTTACAACAGCATGC+GGG | + | chr2_3:22702313-22702332 | None:intergenic | 40.0% | |
| ! | CCATCATTTGAGGCAACATT+TGG | + | chr2_3:22702438-22702457 | None:intergenic | 40.0% |
| CCAAATGTTGCCTCAAATGA+TGG | - | chr2_3:22702435-22702454 | Msa0284550:intron | 40.0% | |
| GATGCTAATCCCATCATTTG+AGG | + | chr2_3:22702448-22702467 | None:intergenic | 40.0% | |
| ! | AAGTGGTAATGCAACTCTAG+TGG | + | chr2_3:22702470-22702489 | None:intergenic | 40.0% |
| CACTTGATCTTGCACAAGAT+GGG | - | chr2_3:22702485-22702504 | Msa0284550:intron | 40.0% | |
| ! | GTAGCAAAGTTTTTCATGCG+TGG | - | chr2_3:22702666-22702685 | Msa0284550:intron | 40.0% |
| ! | ATCTCAAAAGGCAAGAGTGT+AGG | + | chr2_3:22702706-22702725 | None:intergenic | 40.0% |
| ATTCTACCACTTGTCATCAC+GGG | + | chr2_3:22702783-22702802 | None:intergenic | 40.0% | |
| AATAGAGTTAGAGGATCTGG+TGG | - | chr2_3:22702955-22702974 | Msa0284550:intron | 40.0% | |
| !! | GCTGTTTGGTGCTTAGAAAT+CGG | + | chr2_3:22702981-22703000 | None:intergenic | 40.0% |
| TCTAATGCAGAATTTGTCGC+TGG | - | chr2_3:22703009-22703028 | Msa0284550:intron | 40.0% | |
| AAAGGAAGATCCTTCAGAGA+TGG | - | chr2_3:22703062-22703081 | Msa0284550:intron | 40.0% | |
| TGATGACTTTCCATCTCTGA+AGG | + | chr2_3:22703075-22703094 | None:intergenic | 40.0% | |
| CCTAAAACTGAAACTGTTGC+TGG | + | chr2_3:22703160-22703179 | None:intergenic | 40.0% | |
| ! | CCAGCAACAGTTTCAGTTTT+AGG | - | chr2_3:22703157-22703176 | Msa0284550:intron | 40.0% |
| TTTCCAAGAAACATGTGCTC+TGG | + | chr2_3:22703186-22703205 | None:intergenic | 40.0% | |
| TCTTGGAAACTCTCCAAACA+TGG | - | chr2_3:22703197-22703216 | Msa0284550:intron | 40.0% | |
| CTTGGAAACTCTCCAAACAT+GGG | - | chr2_3:22703198-22703217 | Msa0284550:intron | 40.0% | |
| TTGGAAACTCTCCAAACATG+GGG | - | chr2_3:22703199-22703218 | Msa0284550:intron | 40.0% | |
| TTGTCCGGTGATAGTTTCAT+CGG | - | chr2_3:22703283-22703302 | Msa0284550:intron | 40.0% | |
| CATCCTTGGCTTAATCACTT+CGG | - | chr2_3:22703316-22703335 | Msa0284550:intron | 40.0% | |
| AAACCGAAGTGATTAAGCCA+AGG | + | chr2_3:22703322-22703341 | None:intergenic | 40.0% | |
| TGGCTTAATCACTTCGGTTT+CGG | - | chr2_3:22703322-22703341 | Msa0284550:intron | 40.0% | |
| ! | CTTACACTTGTCTTTTGGAC+TGG | - | chr2_3:22703486-22703505 | Msa0284550:intron | 40.0% |
| !! | ACTTGTCTTTTGGACTGGAT+TGG | - | chr2_3:22703491-22703510 | Msa0284550:intron | 40.0% |
| TCATACTTGCCAGATCCCAA+AGG | - | chr2_3:22700628-22700647 | Msa0284550:three_prime_UTR | 45.0% | |
| !! | GAGAGAGAGAGAGTACCTTT+GGG | + | chr2_3:22700646-22700665 | None:intergenic | 45.0% |
| !! | AGAGAGAGAGAGAGTACCTT+TGG | + | chr2_3:22700647-22700666 | None:intergenic | 45.0% |
| ! | CATGTGGAGTTTGAGGTTGT+TGG | - | chr2_3:22700839-22700858 | Msa0284550:three_prime_UTR | 45.0% |
| TGACAACAAGCCCCCAAATA+TGG | + | chr2_3:22701109-22701128 | None:intergenic | 45.0% | |
| AAGCATAAGAGGAACACGAC+AGG | + | chr2_3:22701957-22701976 | None:intergenic | 45.0% | |
| GAGCAATTGAACTCGGTATC+AGG | + | chr2_3:22702123-22702142 | None:intergenic | 45.0% | |
| CATGAGTCTGAGCCTGAAAA+CGG | + | chr2_3:22702238-22702257 | None:intergenic | 45.0% | |
| AACACTTACAACAGCATGCG+GGG | + | chr2_3:22702312-22702331 | None:intergenic | 45.0% | |
| CCATCTTGTGCAAGATCAAG+TGG | + | chr2_3:22702487-22702506 | None:intergenic | 45.0% | |
| CCACTTGATCTTGCACAAGA+TGG | - | chr2_3:22702484-22702503 | Msa0284550:intron | 45.0% | |
| ACAATCACGAGCTAAGCTTG+AGG | - | chr2_3:22702555-22702574 | Msa0284550:intron | 45.0% | |
| TAACCATCCAAGGGTGAACA+AGG | - | chr2_3:22702752-22702771 | Msa0284550:intron | 45.0% | |
| TGGCGAGATTCGTGAAGATA+TGG | + | chr2_3:22702922-22702941 | None:intergenic | 45.0% | |
| !! | TTTGTCGCTGGTTCACATTC+TGG | - | chr2_3:22703021-22703040 | Msa0284550:intron | 45.0% |
| CCATCACAAGTTGTTCCGAT+CGG | - | chr2_3:22703124-22703143 | Msa0284550:intron | 45.0% | |
| GCTGGAAAAACATGTCCGAT+CGG | + | chr2_3:22703142-22703161 | None:intergenic | 45.0% | |
| TGGAAACTCTCCAAACATGG+GGG | - | chr2_3:22703200-22703219 | Msa0284550:intron | 45.0% | |
| CTGTCCGATGAAACTATCAC+CGG | + | chr2_3:22703290-22703309 | None:intergenic | 45.0% | |
| !!! | CTTCGGTTTCGGTGTTTTCA+TGG | - | chr2_3:22703333-22703352 | Msa0284550:intron | 45.0% |
| !! | ATAATAAAAAAAAACAAAAA+AGG | + | chr2_3:22700725-22700744 | None:intergenic | 5.0% |
| !! | GAGAGAGTACCTTTGGGATC+TGG | + | chr2_3:22700640-22700659 | None:intergenic | 50.0% |
| GTCGCCTTCTCAGTATACCA+TGG | + | chr2_3:22702537-22702556 | None:intergenic | 50.0% | |
| GAACCTTGTTCACCCTTGGA+TGG | + | chr2_3:22702758-22702777 | None:intergenic | 50.0% | |
| CCGATCGGAACAACTTGTGA+TGG | + | chr2_3:22703127-22703146 | None:intergenic | 50.0% | |
| CAGCCAGAGCACATGTTTCT+TGG | - | chr2_3:22703180-22703199 | Msa0284550:intron | 50.0% | |
| GGAAACTCTCCAAACATGGG+GGG | - | chr2_3:22703201-22703220 | Msa0284550:intron | 50.0% | |
| CGGTGATAGTTTCATCGGAC+AGG | - | chr2_3:22703288-22703307 | Msa0284550:intron | 50.0% | |
| TCGGACAGGCAAATCATCCT+TGG | - | chr2_3:22703302-22703321 | Msa0284550:intron | 50.0% | |
| GGAGGAACCTTGTTCACCCT+TGG | + | chr2_3:22702762-22702781 | None:intergenic | 55.0% | |
| GTTCCTCCCGTGATGACAAG+TGG | - | chr2_3:22702774-22702793 | Msa0284550:intron | 55.0% | |
| CTACCACTTGTCATCACGGG+AGG | + | chr2_3:22702780-22702799 | None:intergenic | 55.0% | |
| AACTCTCCAAACATGGGGGG+AGG | - | chr2_3:22703204-22703223 | Msa0284550:intron | 55.0% | |
| TGCAGTGGAGGACTCGCATT+TGG | - | chr2_3:22703237-22703256 | Msa0284550:intron | 55.0% | |
| AGTGGAGGACTCGCATTTGG+CGG | - | chr2_3:22703240-22703259 | Msa0284550:intron | 55.0% | |
| AGCAACGCGCTTCTGTTGTC+CGG | - | chr2_3:22703268-22703287 | Msa0284550:intron | 55.0% | |
| !! | GGAGGAGCACCACAATGCAG+TGG | - | chr2_3:22703222-22703241 | Msa0284550:intron | 60.0% |
| ! | GGAGCACCACAATGCAGTGG+AGG | - | chr2_3:22703225-22703244 | Msa0284550:intron | 60.0% |
| GCGAGTCCTCCACTGCATTG+TGG | + | chr2_3:22703234-22703253 | None:intergenic | 60.0% | |
| GGTGCTCCTCCCCCCATGTT+TGG | + | chr2_3:22703213-22703232 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_3 | gene | 22700570 | 22703600 | 22700570 | ID=Msa0284550;Name=Msa0284550 |
| chr2_3 | mRNA | 22700570 | 22703600 | 22700570 | ID=Msa0284550-mRNA-1;Parent=Msa0284550;Name=Msa0284550-mRNA-1;_AED=0.10;_eAED=0.10;_QI=125|1|1|1|0.75|0.6|5|307|235 |
| chr2_3 | exon | 22700570 | 22701251 | 22700570 | ID=Msa0284550-mRNA-1:exon:8815;Parent=Msa0284550-mRNA-1 |
| chr2_3 | exon | 22701564 | 22701743 | 22701564 | ID=Msa0284550-mRNA-1:exon:8814;Parent=Msa0284550-mRNA-1 |
| chr2_3 | exon | 22701848 | 22701925 | 22701848 | ID=Msa0284550-mRNA-1:exon:8813;Parent=Msa0284550-mRNA-1 |
| chr2_3 | exon | 22702003 | 22702122 | 22702003 | ID=Msa0284550-mRNA-1:exon:8812;Parent=Msa0284550-mRNA-1 |
| chr2_3 | exon | 22703521 | 22703600 | 22703521 | ID=Msa0284550-mRNA-1:exon:8811;Parent=Msa0284550-mRNA-1 |
| chr2_3 | five_prime_UTR | 22703521 | 22703600 | 22703521 | ID=Msa0284550-mRNA-1:five_prime_utr;Parent=Msa0284550-mRNA-1 |
| chr2_3 | five_prime_UTR | 22702078 | 22702122 | 22702078 | ID=Msa0284550-mRNA-1:five_prime_utr;Parent=Msa0284550-mRNA-1 |
| chr2_3 | CDS | 22702003 | 22702077 | 22702003 | ID=Msa0284550-mRNA-1:cds;Parent=Msa0284550-mRNA-1 |
| chr2_3 | CDS | 22701848 | 22701925 | 22701848 | ID=Msa0284550-mRNA-1:cds;Parent=Msa0284550-mRNA-1 |
| chr2_3 | CDS | 22701564 | 22701743 | 22701564 | ID=Msa0284550-mRNA-1:cds;Parent=Msa0284550-mRNA-1 |
| chr2_3 | CDS | 22700877 | 22701251 | 22700877 | ID=Msa0284550-mRNA-1:cds;Parent=Msa0284550-mRNA-1 |
| chr2_3 | three_prime_UTR | 22700570 | 22700876 | 22700570 | ID=Msa0284550-mRNA-1:three_prime_utr;Parent=Msa0284550-mRNA-1 |
| Gene Sequence |
| Protein sequence |
