Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0202880 | AFK49645.1 | 97.447 | 235 | 6 | 0 | 1 | 235 | 1 | 235 | 1.01e-169 | 477 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0202880 | sp|Q93ZH2|NFYA3_ARATH | 47.027 | 185 | 90 | 4 | 26 | 206 | 129 | 309 | 1.75e-40 | 144 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0202880 | I3TAV3 | 97.447 | 235 | 6 | 0 | 1 | 235 | 1 | 235 | 4.84e-170 | 477 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0202880 | TF | NF-YA |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0003300 | Msa0202880 | 0.825291 | 5.078662e-54 | -8.615850e-47 |
| Msa0026450 | Msa0202880 | 0.818626 | 1.776732e-52 | -8.615850e-47 |
| Msa0036920 | Msa0202880 | 0.806218 | 9.150397e-50 | -8.615850e-47 |
| Msa0075880 | Msa0202880 | 0.808068 | 3.713293e-50 | -8.615850e-47 |
| Msa0145260 | Msa0202880 | 0.821732 | 3.452006e-53 | -8.615850e-47 |
| Msa0195820 | Msa0202880 | 0.814274 | 1.674518e-51 | -8.615850e-47 |
| Msa0202880 | Msa0245980 | 0.889508 | 2.274059e-73 | -8.615850e-47 |
| Msa0202880 | Msa0272730 | 0.805980 | 1.027073e-49 | -8.615850e-47 |
| Msa0202880 | Msa0273100 | 0.801410 | 9.123874e-49 | -8.615850e-47 |
| Msa0202880 | Msa0284550 | 0.889910 | 1.586561e-73 | -8.615850e-47 |
| Msa0202880 | Msa0306210 | -0.807357 | 5.257926e-50 | -8.615850e-47 |
| Msa0202880 | Msa0338110 | 0.807567 | 4.746638e-50 | -8.615850e-47 |
| Msa0202880 | Msa0340450 | 0.808879 | 2.493324e-50 | -8.615850e-47 |
| Msa0202880 | Msa0344690 | -0.831796 | 1.362760e-55 | -8.615850e-47 |
| Msa0202880 | Msa0379640 | 0.801117 | 1.047235e-48 | -8.615850e-47 |
| Msa0202880 | Msa0433410 | -0.811206 | 7.861469e-51 | -8.615850e-47 |
| Msa0202880 | Msa0443290 | 0.816968 | 4.206582e-52 | -8.615850e-47 |
| Msa0202880 | Msa0444750 | -0.804690 | 1.913844e-49 | -8.615850e-47 |
| Msa0202880 | Msa0469940 | -0.831749 | 1.399361e-55 | -8.615850e-47 |
| Msa0202880 | Msa0490870 | 0.823679 | 1.216281e-53 | -8.615850e-47 |
| Msa0202880 | Msa0532810 | -0.803339 | 3.653757e-49 | -8.615850e-47 |
| Msa0202880 | Msa0553460 | 0.807086 | 6.000667e-50 | -8.615850e-47 |
| Msa0202880 | Msa0555020 | 0.808417 | 3.129513e-50 | -8.615850e-47 |
| Msa0202880 | Msa0567020 | 0.817197 | 3.735523e-52 | -8.615850e-47 |
| Msa0202880 | Msa0572480 | 0.804139 | 2.493214e-49 | -8.615850e-47 |
| Msa0202880 | Msa0607540 | 0.817656 | 2.944701e-52 | -8.615850e-47 |
| Msa0202880 | Msa0608620 | 0.803486 | 3.407440e-49 | -8.615850e-47 |
| Msa0202880 | Msa0648880 | 0.812099 | 5.027366e-51 | -8.615850e-47 |
| Msa0202880 | Msa0657610 | 0.803754 | 2.997116e-49 | -8.615850e-47 |
| Msa0202880 | Msa0658570 | 0.839735 | 1.326265e-57 | -8.615850e-47 |
| Msa0202880 | Msa0690440 | 0.806295 | 8.819009e-50 | -8.615850e-47 |
| Msa0202880 | Msa0691380 | 0.806736 | 7.118431e-50 | -8.615850e-47 |
| Msa0202880 | Msa0703490 | 0.810307 | 1.230260e-50 | -8.615850e-47 |
| Msa0202880 | Msa0724210 | 0.813966 | 1.958147e-51 | -8.615850e-47 |
| Msa0202880 | Msa0740110 | -0.807032 | 6.162091e-50 | -8.615850e-47 |
| Msa0202880 | Msa0865510 | -0.807702 | 4.443764e-50 | -8.615850e-47 |
| Msa0202880 | Msa0886330 | -0.800554 | 1.365012e-48 | -8.615850e-47 |
| Msa0202880 | Msa0926890 | 0.801563 | 8.486278e-49 | -8.615850e-47 |
| Msa0202880 | Msa0935910 | 0.810014 | 1.422438e-50 | -8.615850e-47 |
| Msa0202880 | Msa1001200 | 0.803101 | 4.092999e-49 | -8.615850e-47 |
| Msa0202880 | Msa1041730 | 0.800776 | 1.229886e-48 | -8.615850e-47 |
| Msa0202880 | Msa1075220 | -0.817342 | 3.465161e-52 | -8.615850e-47 |
| Msa0202880 | Msa1121490 | 0.802478 | 5.503496e-49 | -8.615850e-47 |
| Msa0202880 | Msa1139000 | -0.821940 | 3.090180e-53 | -8.615850e-47 |
| Msa0202880 | Msa1144720 | -0.830097 | 3.557896e-55 | -8.615850e-47 |
| Msa0202880 | Msa1156340 | -0.807005 | 6.242113e-50 | -8.615850e-47 |
| Msa0202880 | Msa1162550 | -0.824374 | 8.355718e-54 | -8.615850e-47 |
| Msa0202880 | Msa1286760 | 0.800252 | 1.572719e-48 | -8.615850e-47 |
| Msa0202880 | Msa1322890 | 0.815538 | 8.783049e-52 | -8.615850e-47 |
| Msa0202880 | Msa1376890 | 0.830059 | 3.634317e-55 | -8.615850e-47 |
| Msa0202880 | Msa1390050 | 0.808609 | 2.847078e-50 | -8.615850e-47 |
| Msa0202880 | Msa1420290 | 0.804049 | 2.602467e-49 | -8.615850e-47 |
| Msa0202880 | Msa1457040 | 0.801882 | 7.300042e-49 | -8.615850e-47 |
| Msa0202880 | Msa1459050 | 0.825164 | 5.443342e-54 | -8.615850e-47 |
| Msa0202880 | Msa1466810 | 0.801549 | 8.545481e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0202880 | MtrunA17_Chr2g0300261 | 97.447 | 235 | 6 | 0 | 1 | 235 | 1 | 235 | 9.33e-174 | 477 |
| Msa0202880 | MtrunA17_Chr8g0343451 | 46.907 | 194 | 92 | 6 | 11 | 204 | 103 | 285 | 7.90e-44 | 149 |
| Msa0202880 | MtrunA17_Chr2g0329811 | 51.007 | 149 | 61 | 4 | 6 | 145 | 108 | 253 | 5.54e-39 | 137 |
| Msa0202880 | MtrunA17_Chr3g0103391 | 53.731 | 134 | 45 | 5 | 23 | 156 | 123 | 239 | 1.12e-36 | 131 |
| Msa0202880 | MtrunA17_Chr8g0352251 | 52.273 | 132 | 56 | 3 | 33 | 162 | 114 | 240 | 2.84e-36 | 129 |
| Msa0202880 | MtrunA17_Chr2g0292411 | 53.774 | 106 | 46 | 2 | 59 | 162 | 95 | 199 | 5.37e-31 | 113 |
| Msa0202880 | MtrunA17_Chr1g0177091 | 45.775 | 142 | 61 | 3 | 5 | 145 | 105 | 231 | 1.09e-29 | 113 |
| Msa0202880 | MtrunA17_Chr7g0267581 | 52.500 | 120 | 39 | 5 | 32 | 150 | 134 | 236 | 4.24e-29 | 111 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0202880 | AT1G72830.1 | 47.027 | 185 | 90 | 4 | 26 | 206 | 129 | 309 | 1.78e-41 | 144 |
| Msa0202880 | AT1G72830.2 | 46.774 | 186 | 90 | 5 | 26 | 206 | 129 | 310 | 9.92e-40 | 140 |
| Msa0202880 | AT1G54160.1 | 68.367 | 98 | 29 | 1 | 47 | 142 | 145 | 242 | 1.30e-38 | 136 |
| Msa0202880 | AT1G17590.3 | 61.947 | 113 | 32 | 3 | 32 | 142 | 133 | 236 | 1.31e-38 | 137 |
| Msa0202880 | AT1G17590.2 | 61.947 | 113 | 32 | 3 | 32 | 142 | 133 | 236 | 1.31e-38 | 137 |
| Msa0202880 | AT1G17590.4 | 61.947 | 113 | 32 | 3 | 32 | 142 | 133 | 236 | 1.31e-38 | 137 |
| Msa0202880 | AT1G17590.1 | 61.947 | 113 | 32 | 3 | 32 | 142 | 133 | 236 | 1.31e-38 | 137 |
| Msa0202880 | AT3G14020.2 | 62.626 | 99 | 37 | 0 | 48 | 146 | 141 | 239 | 1.90e-35 | 128 |
| Msa0202880 | AT3G14020.1 | 62.626 | 99 | 37 | 0 | 48 | 146 | 141 | 239 | 1.90e-35 | 128 |
| Msa0202880 | AT1G30500.2 | 56.364 | 110 | 44 | 3 | 32 | 141 | 58 | 163 | 4.47e-34 | 121 |
| Msa0202880 | AT1G30500.1 | 56.364 | 110 | 40 | 3 | 32 | 141 | 58 | 159 | 6.23e-34 | 120 |
| Msa0202880 | AT2G34720.1 | 46.104 | 154 | 68 | 5 | 19 | 168 | 38 | 180 | 7.74e-34 | 120 |
| Msa0202880 | AT2G34720.2 | 46.575 | 146 | 65 | 4 | 25 | 168 | 11 | 145 | 1.48e-33 | 119 |
| Msa0202880 | AT2G34720.3 | 46.575 | 146 | 65 | 4 | 25 | 168 | 11 | 145 | 1.48e-33 | 119 |
| Msa0202880 | AT5G12840.4 | 53.271 | 107 | 45 | 2 | 33 | 139 | 131 | 232 | 2.36e-32 | 119 |
| Msa0202880 | AT5G12840.2 | 53.271 | 107 | 45 | 2 | 33 | 139 | 131 | 232 | 2.36e-32 | 119 |
| Msa0202880 | AT5G12840.5 | 53.271 | 107 | 45 | 2 | 33 | 139 | 132 | 233 | 2.77e-32 | 119 |
| Msa0202880 | AT5G12840.3 | 53.271 | 107 | 45 | 2 | 33 | 139 | 132 | 233 | 2.77e-32 | 119 |
| Msa0202880 | AT5G12840.1 | 53.271 | 107 | 45 | 2 | 33 | 139 | 132 | 233 | 2.77e-32 | 119 |
| Msa0202880 | AT3G20910.1 | 49.587 | 121 | 54 | 4 | 33 | 151 | 126 | 241 | 9.51e-31 | 115 |
| Msa0202880 | AT1G72830.3 | 41.622 | 185 | 75 | 5 | 26 | 206 | 129 | 284 | 9.83e-28 | 107 |
| Msa0202880 | AT5G06510.4 | 64.474 | 76 | 22 | 2 | 64 | 137 | 23 | 95 | 4.65e-25 | 97.4 |
| Msa0202880 | AT5G06510.7 | 64.474 | 76 | 22 | 2 | 64 | 137 | 23 | 95 | 4.65e-25 | 97.4 |
| Msa0202880 | AT5G06510.3 | 64.474 | 76 | 22 | 2 | 64 | 137 | 69 | 141 | 1.30e-24 | 97.4 |
| Msa0202880 | AT5G06510.1 | 64.474 | 76 | 22 | 2 | 64 | 137 | 118 | 190 | 1.38e-24 | 98.6 |
| Msa0202880 | AT5G06510.5 | 64.474 | 76 | 22 | 2 | 64 | 137 | 118 | 190 | 1.38e-24 | 98.6 |
| Msa0202880 | AT5G06510.2 | 64.474 | 76 | 22 | 2 | 64 | 137 | 118 | 190 | 1.38e-24 | 98.6 |
| Msa0202880 | AT5G06510.6 | 64.474 | 76 | 22 | 2 | 64 | 137 | 118 | 190 | 1.38e-24 | 98.6 |
| Msa0202880 | AT3G05690.1 | 49.123 | 114 | 37 | 4 | 29 | 137 | 102 | 199 | 5.32e-24 | 97.8 |
| Msa0202880 | AT3G05690.2 | 49.123 | 114 | 37 | 4 | 29 | 137 | 139 | 236 | 1.03e-23 | 97.4 |
Find 68 sgRNAs with CRISPR-Local
Find 159 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TATTGCTTACACTTGTCTTT+TGG | 0.230753 | 2_1:-25766802 | Msa0202880:three_prime_UTR |
| ACTTGTTGTTGGGTTGAAAT+TGG | 0.261072 | 2_1:+25769736 | None:intergenic |
| TTTGTCACTGGTTCACATTC+TGG | 0.264957 | 2_1:-25767263 | Msa0202880:CDS |
| ACTAATGAACCAGCGAAAAT+TGG | 0.269126 | 2_1:+25768058 | None:intergenic |
| CAGCCAGAGCACATGTTTCT+TGG | 0.297173 | 2_1:-25767104 | Msa0202880:CDS |
| CATGCTTTGAATAGAGTTAG+AGG | 0.318785 | 2_1:-25767338 | Msa0202880:CDS |
| TACATGTGAAAGTAATAAAA+AGG | 0.321877 | 2_1:+25766837 | None:intergenic |
| TGGCTTAATCACTTTGGTTT+CGG | 0.324050 | 2_1:-25766962 | Msa0202880:three_prime_UTR |
| GCGAAAATTGGATCACTATA+AGG | 0.333039 | 2_1:+25768070 | None:intergenic |
| CTTGTTGTTGGGTTGAAATT+GGG | 0.377337 | 2_1:+25769737 | None:intergenic |
| GAGCAATTGAACTCGGTATC+AGG | 0.378172 | 2_1:+25768215 | None:intergenic |
| AGAAGTGTTGTACTTGTTGT+TGG | 0.382513 | 2_1:+25769725 | None:intergenic |
| CCTAAAACTGAAACTGTTGC+TGG | 0.404257 | 2_1:+25767127 | None:intergenic |
| TTGAATAGAGTTAGAGGATC+TGG | 0.407085 | 2_1:-25767332 | Msa0202880:CDS |
| GATCAATATATAATTTGCTT+TGG | 0.413092 | 2_1:-25766737 | Msa0202880:three_prime_UTR |
| TCAAATGTTGCCTCAAATGA+TGG | 0.414655 | 2_1:-25767849 | Msa0202880:CDS |
| TGCAGTGGAGGACTCGCATT+TGG | 0.418965 | 2_1:-25767047 | Msa0202880:CDS |
| GAGAGAGTACCTTTGGGATC+TGG | 0.421698 | 2_1:+25769669 | None:intergenic |
| CTCTATTCAAAGCATGTTTG+TGG | 0.437986 | 2_1:+25767345 | None:intergenic |
| GCTGTTTGGTGCTTAGAAAT+CGG | 0.443184 | 2_1:+25767306 | None:intergenic |
| TGGCGAGATTCGTGAAGATA+TGG | 0.445004 | 2_1:+25767365 | None:intergenic |
| CATCCTTGGCTTAATCACTT+TGG | 0.450015 | 2_1:-25766968 | Msa0202880:three_prime_UTR |
| ATCATTTGAGGCAACATTTG+AGG | 0.451884 | 2_1:+25767851 | None:intergenic |
| GAAGTGTTGTACTTGTTGTT+GGG | 0.454031 | 2_1:+25769726 | None:intergenic |
| CCACTTGATCTTGCACAAGA+TGG | 0.459081 | 2_1:-25767800 | Msa0202880:CDS |
| ATTAGACTCTGAAAGCTGTT+TGG | 0.461146 | 2_1:+25767292 | None:intergenic |
| AATTTGCTTTGGTTTGAGCT+TGG | 0.466625 | 2_1:-25766726 | Msa0202880:three_prime_UTR |
| GATGGAAGATATGTTATCTC+TGG | 0.468775 | 2_1:+25767178 | None:intergenic |
| CACTTGATCTTGCACAAGAT+GGG | 0.471002 | 2_1:-25767799 | Msa0202880:CDS |
| AGCAACGCGCTTCTGTTGTC+CGG | 0.486636 | 2_1:-25767016 | Msa0202880:CDS |
| TCTTGGAAACTCTCCAAACA+TGG | 0.497227 | 2_1:-25767087 | Msa0202880:CDS |
| CACTGACAACAATTATCAAA+AGG | 0.500188 | 2_1:-25767240 | Msa0202880:CDS |
| TCGGACAGGCAAATCATCCT+TGG | 0.503377 | 2_1:-25766982 | Msa0202880:three_prime_UTR |
| AAGTTATGTCAAAGCATAAG+AGG | 0.507515 | 2_1:+25768370 | None:intergenic |
| CGGTGATAGTTTCATCGGAC+AGG | 0.509040 | 2_1:-25766996 | Msa0202880:exon |
| TTTCCAAGAAACATGTGCTC+TGG | 0.515589 | 2_1:+25767101 | None:intergenic |
| AGTAATGGCTGTGTTGTTGA+AGG | 0.525778 | 2_1:-25768269 | Msa0202880:five_prime_UTR |
| GGATGATTCAAAGAGAGAAA+AGG | 0.526180 | 2_1:+25768236 | None:intergenic |
| TTGTCCGGTGATAGTTTCAT+CGG | 0.526378 | 2_1:-25767001 | Msa0202880:exon |
| TTATACAGAATCATTCTCTC+AGG | 0.534332 | 2_1:-25768309 | Msa0202880:five_prime_UTR |
| AAAGGAAGATCCTTCAGAGA+TGG | 0.545453 | 2_1:-25767222 | Msa0202880:CDS |
| CAAATGTTGCCTCAAATGAT+GGG | 0.554653 | 2_1:-25767848 | Msa0202880:CDS |
| TCTAATGCAGAATTTGTCAC+TGG | 0.556177 | 2_1:-25767275 | Msa0202880:CDS |
| AGTTGATCATAATCACTCAA+TGG | 0.558578 | 2_1:-25768189 | Msa0202880:intron |
| TGATGACTTTCCATCTCTGA+AGG | 0.561649 | 2_1:+25767212 | None:intergenic |
| CCGATCGGAACAACTTGTGA+TGG | 0.564255 | 2_1:+25767160 | None:intergenic |
| GATGCTAATCCCATCATTTG+AGG | 0.565976 | 2_1:+25767839 | None:intergenic |
| AAGTGGTAATGCAACTCTAG+TGG | 0.571902 | 2_1:+25767817 | None:intergenic |
| CTTGGAAACTCTCCAAACAT+GGG | 0.573579 | 2_1:-25767086 | Msa0202880:CDS |
| GGAGGAGCACCACAATGCAG+TGG | 0.581886 | 2_1:-25767062 | Msa0202880:CDS |
| AGTGGAGGACTCGCATTTGG+CGG | 0.584913 | 2_1:-25767044 | Msa0202880:CDS |
| CCATCTTGTGCAAGATCAAG+TGG | 0.592935 | 2_1:+25767800 | None:intergenic |
| CCATCACAAGTTGTTCCGAT+CGG | 0.593385 | 2_1:-25767160 | Msa0202880:CDS |
| TTGGAAACTCTCCAAACATG+GGG | 0.601862 | 2_1:-25767085 | Msa0202880:CDS |
| AATACCATGGTATACTGAGA+AGG | 0.610675 | 2_1:-25767754 | Msa0202880:CDS |
| AACTTGTGAGCAATTGAACT+CGG | 0.618219 | 2_1:+25768208 | None:intergenic |
| GGAGCACCACAATGCAGTGG+AGG | 0.620324 | 2_1:-25767059 | Msa0202880:CDS |
| CTGTCCGATGAAACTATCAC+CGG | 0.624235 | 2_1:+25766997 | None:intergenic |
| GTCAATGCAAAACAATACCA+TGG | 0.632585 | 2_1:-25767767 | Msa0202880:CDS |
| GGAAACTCTCCAAACATGGG+GGG | 0.636980 | 2_1:-25767083 | Msa0202880:CDS |
| TCATACTTGCCAGATCCCAA+AGG | 0.638158 | 2_1:-25769678 | Msa0202880:intron |
| AAACCAAAGTGATTAAGCCA+AGG | 0.645864 | 2_1:+25766965 | None:intergenic |
| AATAGAGTTAGAGGATCTGG+TGG | 0.657703 | 2_1:-25767329 | Msa0202880:CDS |
| GTCGCCTTCTCAGTATACCA+TGG | 0.679853 | 2_1:+25767750 | None:intergenic |
| GCGAGTCCTCCACTGCATTG+TGG | 0.686798 | 2_1:+25767053 | None:intergenic |
| TGGAAACTCTCCAAACATGG+GGG | 0.690180 | 2_1:-25767084 | Msa0202880:CDS |
| AAAACACTTACAACAGCATG+CGG | 0.692250 | 2_1:+25768025 | None:intergenic |
| ACAATCACGAGCTAAGCTTG+AGG | 0.693616 | 2_1:-25767729 | Msa0202880:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CATAATAAAAAAAACAAAAA+AGG | + | chr2_1:25766856-25766875 | None:intergenic | 10.0% |
| !! | AAAAAACAAAAAAGGAAAAA+AGG | + | chr2_1:25766848-25766867 | None:intergenic | 15.0% |
| !! | AATCATAAATAATCCATATT+TGG | - | chr2_1:25767224-25767243 | Msa0202880:CDS | 15.0% |
| !! | ATCATAAATAATCCATATTT+GGG | - | chr2_1:25767225-25767244 | Msa0202880:CDS | 15.0% |
| !! | TTTCTTAGAAAACATAAATT+AGG | + | chr2_1:25767625-25767644 | None:intergenic | 15.0% |
| !!! | CTTTAAAAAGTTTTATTGTT+TGG | - | chr2_1:25767723-25767742 | Msa0202880:CDS | 15.0% |
| !! | GTATAAATATGTTCATAATT+TGG | - | chr2_1:25767906-25767925 | Msa0202880:intron | 15.0% |
| !!! | AAGATCTAAATTTTAAGTAA+TGG | - | chr2_1:25768157-25768176 | Msa0202880:intron | 15.0% |
| !!! | TTTCACATGTATTTTAAAAT+TGG | - | chr2_1:25769616-25769635 | Msa0202880:intron | 15.0% |
| !!! | CATGATTTAAGGTTAAATTT+TGG | - | chr2_1:25766933-25766952 | Msa0202880:three_prime_UTR | 20.0% |
| !!! | TCTGTTTTGTTTTTTTTTTG+AGG | - | chr2_1:25767018-25767037 | Msa0202880:CDS | 20.0% |
| !! | TCATAAATAATCCATATTTG+GGG | - | chr2_1:25767226-25767245 | Msa0202880:CDS | 20.0% |
| !!! | AGTTTCAATTTTTTAGTACT+TGG | - | chr2_1:25767273-25767292 | Msa0202880:CDS | 20.0% |
| !! | AATTCTCAAAATCTTACAAA+GGG | + | chr2_1:25767436-25767455 | None:intergenic | 20.0% |
| !! | TAATTCTCAAAATCTTACAA+AGG | + | chr2_1:25767437-25767456 | None:intergenic | 20.0% |
| !!! | TGTAAGATTTTGAGAATTAT+TGG | - | chr2_1:25767438-25767457 | Msa0202880:intron | 20.0% |
| !! | ATGAATTAGTATGAATGTTA+TGG | - | chr2_1:25767547-25767566 | Msa0202880:intron | 20.0% |
| !! | AACTGAAAAAAAACTGATTA+AGG | - | chr2_1:25767863-25767882 | Msa0202880:intron | 20.0% |
| !! | TATTTATACTGAAAGAGTAA+AGG | + | chr2_1:25767895-25767914 | None:intergenic | 20.0% |
| !!! | TTTTATGTTTGTGATATTCT+TGG | - | chr2_1:25768096-25768115 | Msa0202880:intron | 20.0% |
| !!! | TGGTGAAATTTTTATTTGAA+AGG | - | chr2_1:25769000-25769019 | Msa0202880:intron | 20.0% |
| !!! | GGTGAAATTTTTATTTGAAA+GGG | - | chr2_1:25769001-25769020 | Msa0202880:intron | 20.0% |
| !! | AGTAAACTATTCAATAAAAC+AGG | + | chr2_1:25769036-25769055 | None:intergenic | 20.0% |
| !! | TACATGTGAAAGTAATAAAA+AGG | + | chr2_1:25769607-25769626 | None:intergenic | 20.0% |
| !!! | GATCAATATATAATTTGCTT+TGG | - | chr2_1:25769704-25769723 | Msa0202880:five_prime_UTR | 20.0% |
| !! | TCTTCTTTTAGCATGATTTA+AGG | - | chr2_1:25766922-25766941 | Msa0202880:three_prime_UTR | 25.0% |
| ! | TAGTTCATTCATACTAGAAT+TGG | + | chr2_1:25767062-25767081 | None:intergenic | 25.0% |
| ! | TCCTAGCATATTTGATTATT+TGG | - | chr2_1:25767115-25767134 | Msa0202880:CDS | 25.0% |
| ! | CATAAATAATCCATATTTGG+GGG | - | chr2_1:25767227-25767246 | Msa0202880:CDS | 25.0% |
| ! | AATATTGAACTCAAGTTTCA+AGG | - | chr2_1:25767316-25767335 | Msa0202880:CDS | 25.0% |
| !!! | GTTTGATGATCCATTTTATA+TGG | - | chr2_1:25767350-25767369 | Msa0202880:CDS | 25.0% |
| ! | TTCAACAATGTATGTGAAAT+TGG | - | chr2_1:25767523-25767542 | Msa0202880:intron | 25.0% |
| !!! | GTTCATAATTTGGTGTTTTA+TGG | - | chr2_1:25767916-25767935 | Msa0202880:intron | 25.0% |
| !!! | ACAAAAGCTTTTTTGCATTT+AGG | + | chr2_1:25767969-25767988 | None:intergenic | 25.0% |
| !! | CACAAAATATGTGTTTCTAA+AGG | + | chr2_1:25768012-25768031 | None:intergenic | 25.0% |
| ! | GTATGTAAAACTTCTGTATT+TGG | - | chr2_1:25768274-25768293 | Msa0202880:five_prime_UTR | 25.0% |
| !!! | TGTTTTGCATTGACATAAAT+GGG | + | chr2_1:25768668-25768687 | None:intergenic | 25.0% |
| !!! | TTGTTTTGCATTGACATAAA+TGG | + | chr2_1:25768669-25768688 | None:intergenic | 25.0% |
| ! | AAAAAGTAAAGTTCAAAGCA+TGG | + | chr2_1:25768774-25768793 | None:intergenic | 25.0% |
| !!! | GAACTTTACTTTTTTCATTC+AGG | - | chr2_1:25768780-25768799 | Msa0202880:intron | 25.0% |
| !! | CTACTAGTTTATATGCTATA+AGG | + | chr2_1:25768807-25768826 | None:intergenic | 25.0% |
| !! | TGATTTTATATAACCATCCA+AGG | - | chr2_1:25768899-25768918 | Msa0202880:intron | 25.0% |
| !! | GATTTTATATAACCATCCAA+GGG | - | chr2_1:25768900-25768919 | Msa0202880:intron | 25.0% |
| ! | CAAAATGTCATGTTATTACA+TGG | - | chr2_1:25768980-25768999 | Msa0202880:intron | 25.0% |
| AAAAAGGAAAAAAGGCAAAG+AGG | + | chr2_1:25766840-25766859 | None:intergenic | 30.0% | |
| !! | GAATGAACTAGTTCTTTTGT+TGG | - | chr2_1:25767072-25767091 | Msa0202880:CDS | 30.0% |
| GCCAAATAATCAAATATGCT+AGG | + | chr2_1:25767119-25767138 | None:intergenic | 30.0% | |
| TAAGATCAATGAGAAGTGAA+AGG | - | chr2_1:25767199-25767218 | Msa0202880:CDS | 30.0% | |
| ! | GATGATCCATTTTATATGGT+TGG | - | chr2_1:25767354-25767373 | Msa0202880:CDS | 30.0% |
| ! | TATGGATTGAGTACAAACTA+AGG | + | chr2_1:25767382-25767401 | None:intergenic | 30.0% |
| GTATGAATGTTATGGAGTTA+AGG | - | chr2_1:25767555-25767574 | Msa0202880:intron | 30.0% | |
| AGAAAACATAAATTAGGCCA+TGG | + | chr2_1:25767619-25767638 | None:intergenic | 30.0% | |
| CGAAAATGAAGCTATTAACA+CGG | + | chr2_1:25767830-25767849 | None:intergenic | 30.0% | |
| AAGTTATGTCAAAGCATAAG+AGG | + | chr2_1:25768074-25768093 | None:intergenic | 30.0% | |
| TTATACAGAATCATTCTCTC+AGG | - | chr2_1:25768132-25768151 | Msa0202880:intron | 30.0% | |
| AGTTGATCATAATCACTCAA+TGG | - | chr2_1:25768252-25768271 | Msa0202880:exon | 30.0% | |
| TTTCTCGTTACAATCTCAAA+AGG | + | chr2_1:25768875-25768894 | None:intergenic | 30.0% | |
| CACTGACAACAATTATCAAA+AGG | - | chr2_1:25769201-25769220 | Msa0202880:intron | 30.0% | |
| !!! | TATGTTATCTCTGGTTTTTG+AGG | + | chr2_1:25769257-25769276 | None:intergenic | 30.0% |
| ! | TATTGCTTACACTTGTCTTT+TGG | - | chr2_1:25769639-25769658 | Msa0202880:intron | 30.0% |
| !!! | GTTTCTGCATGAAACTTTTT+TGG | - | chr2_1:25769676-25769695 | Msa0202880:intron | 30.0% |
| !! | ACTTGTTGTTGGGTTGAAAT+TGG | + | chr2_1:25766708-25766727 | None:intergenic | 35.0% |
| !! | GAAGTGTTGTACTTGTTGTT+GGG | + | chr2_1:25766718-25766737 | None:intergenic | 35.0% |
| !! | AGAAGTGTTGTACTTGTTGT+TGG | + | chr2_1:25766719-25766738 | None:intergenic | 35.0% |
| ! | TGGTGTTTTTCATTTGCATG+TGG | - | chr2_1:25766953-25766972 | Msa0202880:three_prime_UTR | 35.0% |
| ! | TTGTTGGTTGAGATTTGGAA+AGG | - | chr2_1:25766985-25767004 | Msa0202880:three_prime_UTR | 35.0% |
| ! | AAGGCACCAACCATATAAAA+TGG | + | chr2_1:25767363-25767382 | None:intergenic | 35.0% |
| TCTATTAGAGTTGTTCTCCA+TGG | - | chr2_1:25767599-25767618 | Msa0202880:intron | 35.0% | |
| TCACTACTTCTCAAGTATTC+AGG | - | chr2_1:25767795-25767814 | Msa0202880:CDS | 35.0% | |
| ! | GTGTTTCTAAAGGATGTGAA+GGG | + | chr2_1:25768002-25768021 | None:intergenic | 35.0% |
| ! | TGTGTTTCTAAAGGATGTGA+AGG | + | chr2_1:25768003-25768022 | None:intergenic | 35.0% |
| GGATGATTCAAAGAGAGAAA+AGG | + | chr2_1:25768208-25768227 | None:intergenic | 35.0% | |
| AACTTGTGAGCAATTGAACT+CGG | + | chr2_1:25768236-25768255 | None:intergenic | 35.0% | |
| GCGAAAATTGGATCACTATA+AGG | + | chr2_1:25768374-25768393 | None:intergenic | 35.0% | |
| ! | TATAGTGATCCAATTTTCGC+TGG | - | chr2_1:25768374-25768393 | Msa0202880:five_prime_UTR | 35.0% |
| ACTAATGAACCAGCGAAAAT+TGG | + | chr2_1:25768386-25768405 | None:intergenic | 35.0% | |
| AAAACACTTACAACAGCATG+CGG | + | chr2_1:25768419-25768438 | None:intergenic | 35.0% | |
| ! | ATCATTTGAGGCAACATTTG+AGG | + | chr2_1:25768593-25768612 | None:intergenic | 35.0% |
| TCAAATGTTGCCTCAAATGA+TGG | - | chr2_1:25768592-25768611 | Msa0202880:intron | 35.0% | |
| CAAATGTTGCCTCAAATGAT+GGG | - | chr2_1:25768593-25768612 | Msa0202880:intron | 35.0% | |
| GTCAATGCAAAACAATACCA+TGG | - | chr2_1:25768674-25768693 | Msa0202880:intron | 35.0% | |
| AATACCATGGTATACTGAGA+AGG | - | chr2_1:25768687-25768706 | Msa0202880:intron | 35.0% | |
| ! | ATCTCAAAAGGTAAGAGTGT+AGG | + | chr2_1:25768863-25768882 | None:intergenic | 35.0% |
| AATTCTACCACTTGTCATCA+CGG | + | chr2_1:25768941-25768960 | None:intergenic | 35.0% | |
| CTCTATTCAAAGCATGTTTG+TGG | + | chr2_1:25769099-25769118 | None:intergenic | 35.0% | |
| ! | CATGCTTTGAATAGAGTTAG+AGG | - | chr2_1:25769103-25769122 | Msa0202880:intron | 35.0% |
| TTGAATAGAGTTAGAGGATC+TGG | - | chr2_1:25769109-25769128 | Msa0202880:intron | 35.0% | |
| ! | ATTAGACTCTGAAAGCTGTT+TGG | + | chr2_1:25769152-25769171 | None:intergenic | 35.0% |
| TCTAATGCAGAATTTGTCAC+TGG | - | chr2_1:25769166-25769185 | Msa0202880:intron | 35.0% | |
| GATGGAAGATATGTTATCTC+TGG | + | chr2_1:25769266-25769285 | None:intergenic | 35.0% | |
| AAACCAAAGTGATTAAGCCA+AGG | + | chr2_1:25769479-25769498 | None:intergenic | 35.0% | |
| ! | TGGCTTAATCACTTTGGTTT+CGG | - | chr2_1:25769479-25769498 | Msa0202880:intron | 35.0% |
| !! | TCGGTGTTTTCATGGTAATT+TGG | - | chr2_1:25769498-25769517 | Msa0202880:intron | 35.0% |
| !! | AATTTGCTTTGGTTTGAGCT+TGG | - | chr2_1:25769715-25769734 | Msa0202880:five_prime_UTR | 35.0% |
| AAAAAGGCAAAGAGGCAAAC+AGG | + | chr2_1:25766832-25766851 | None:intergenic | 40.0% | |
| TCATTTGCATGTGGAGTTTG+AGG | - | chr2_1:25766962-25766981 | Msa0202880:three_prime_UTR | 40.0% | |
| ! | TGAGGTTGTTGGTTGAGATT+TGG | - | chr2_1:25766980-25766999 | Msa0202880:three_prime_UTR | 40.0% |
| AGTCAGCTGACATCTTCATA+TGG | + | chr2_1:25767400-25767419 | None:intergenic | 40.0% | |
| CTACTTCTCAAGTATTCAGG+CGG | - | chr2_1:25767798-25767817 | Msa0202880:CDS | 40.0% | |
| TACTTCTCAAGTATTCAGGC+GGG | - | chr2_1:25767799-25767818 | Msa0202880:CDS | 40.0% | |
| ! | TTTCTAAAGGATGTGAAGGG+AGG | + | chr2_1:25767999-25768018 | None:intergenic | 40.0% |
| ! | AGTAATGGCTGTGTTGTTGA+AGG | - | chr2_1:25768172-25768191 | Msa0202880:intron | 40.0% |
| ! | AGTTATTGTCGTCCGTTTTC+AGG | - | chr2_1:25768328-25768347 | Msa0202880:five_prime_UTR | 40.0% |
| GATGCTAATCCCATCATTTG+AGG | + | chr2_1:25768605-25768624 | None:intergenic | 40.0% | |
| ! | AAGTGGTAATGCAACTCTAG+TGG | + | chr2_1:25768627-25768646 | None:intergenic | 40.0% |
| CACTTGATCTTGCACAAGAT+GGG | - | chr2_1:25768642-25768661 | Msa0202880:intron | 40.0% | |
| ! | GTAGCAAAGTTTTTCATGCG+TGG | - | chr2_1:25768823-25768842 | Msa0202880:intron | 40.0% |
| ATTCTACCACTTGTCATCAC+GGG | + | chr2_1:25768940-25768959 | None:intergenic | 40.0% | |
| AATAGAGTTAGAGGATCTGG+TGG | - | chr2_1:25769112-25769131 | Msa0202880:intron | 40.0% | |
| !! | GCTGTTTGGTGCTTAGAAAT+CGG | + | chr2_1:25769138-25769157 | None:intergenic | 40.0% |
| !! | TTTGTCACTGGTTCACATTC+TGG | - | chr2_1:25769178-25769197 | Msa0202880:intron | 40.0% |
| AAAGGAAGATCCTTCAGAGA+TGG | - | chr2_1:25769219-25769238 | Msa0202880:intron | 40.0% | |
| TGATGACTTTCCATCTCTGA+AGG | + | chr2_1:25769232-25769251 | None:intergenic | 40.0% | |
| CCTAAAACTGAAACTGTTGC+TGG | + | chr2_1:25769317-25769336 | None:intergenic | 40.0% | |
| ! | CCAGCAACAGTTTCAGTTTT+AGG | - | chr2_1:25769314-25769333 | Msa0202880:intron | 40.0% |
| TTTCCAAGAAACATGTGCTC+TGG | + | chr2_1:25769343-25769362 | None:intergenic | 40.0% | |
| TCTTGGAAACTCTCCAAACA+TGG | - | chr2_1:25769354-25769373 | Msa0202880:intron | 40.0% | |
| CTTGGAAACTCTCCAAACAT+GGG | - | chr2_1:25769355-25769374 | Msa0202880:intron | 40.0% | |
| TTGGAAACTCTCCAAACATG+GGG | - | chr2_1:25769356-25769375 | Msa0202880:intron | 40.0% | |
| TTGTCCGGTGATAGTTTCAT+CGG | - | chr2_1:25769440-25769459 | Msa0202880:intron | 40.0% | |
| CATCCTTGGCTTAATCACTT+TGG | - | chr2_1:25769473-25769492 | Msa0202880:intron | 40.0% | |
| !!! | CTTTGGTTTCGGTGTTTTCA+TGG | - | chr2_1:25769490-25769509 | Msa0202880:intron | 40.0% |
| ! | CTTACACTTGTCTTTTGGAC+TGG | - | chr2_1:25769644-25769663 | Msa0202880:intron | 40.0% |
| !! | ACTTGTCTTTTGGACTGGAT+TGG | - | chr2_1:25769649-25769668 | Msa0202880:intron | 40.0% |
| TCATACTTGCCAGATCCCAA+AGG | - | chr2_1:25766763-25766782 | Msa0202880:three_prime_UTR | 45.0% | |
| !! | GAGAGAGAGAGAGTACCTTT+GGG | + | chr2_1:25766781-25766800 | None:intergenic | 45.0% |
| !! | AGAGAGAGAGAGAGTACCTT+TGG | + | chr2_1:25766782-25766801 | None:intergenic | 45.0% |
| ! | CATGTGGAGTTTGAGGTTGT+TGG | - | chr2_1:25766969-25766988 | Msa0202880:three_prime_UTR | 45.0% |
| TGACATCAAGCCCCCAAATA+TGG | + | chr2_1:25767240-25767259 | None:intergenic | 45.0% | |
| GAGCAATTGAACTCGGTATC+AGG | + | chr2_1:25768229-25768248 | None:intergenic | 45.0% | |
| CATGAGTCTGAGCCTGAAAA+CGG | + | chr2_1:25768343-25768362 | None:intergenic | 45.0% | |
| CCATCTTGTGCAAGATCAAG+TGG | + | chr2_1:25768644-25768663 | None:intergenic | 45.0% | |
| CCACTTGATCTTGCACAAGA+TGG | - | chr2_1:25768641-25768660 | Msa0202880:intron | 45.0% | |
| ACAATCACGAGCTAAGCTTG+AGG | - | chr2_1:25768712-25768731 | Msa0202880:intron | 45.0% | |
| TAACCATCCAAGGGTGAACA+AGG | - | chr2_1:25768909-25768928 | Msa0202880:intron | 45.0% | |
| TGGCGAGATTCGTGAAGATA+TGG | + | chr2_1:25769079-25769098 | None:intergenic | 45.0% | |
| CCATCACAAGTTGTTCCGAT+CGG | - | chr2_1:25769281-25769300 | Msa0202880:intron | 45.0% | |
| GCTGGAAAAACATGTCCGAT+CGG | + | chr2_1:25769299-25769318 | None:intergenic | 45.0% | |
| TGGAAACTCTCCAAACATGG+GGG | - | chr2_1:25769357-25769376 | Msa0202880:intron | 45.0% | |
| CTGTCCGATGAAACTATCAC+CGG | + | chr2_1:25769447-25769466 | None:intergenic | 45.0% | |
| !! | GAGAGAGTACCTTTGGGATC+TGG | + | chr2_1:25766775-25766794 | None:intergenic | 50.0% |
| GTCGCCTTCTCAGTATACCA+TGG | + | chr2_1:25768694-25768713 | None:intergenic | 50.0% | |
| GAACCTTGTTCACCCTTGGA+TGG | + | chr2_1:25768915-25768934 | None:intergenic | 50.0% | |
| CCGATCGGAACAACTTGTGA+TGG | + | chr2_1:25769284-25769303 | None:intergenic | 50.0% | |
| CAGCCAGAGCACATGTTTCT+TGG | - | chr2_1:25769337-25769356 | Msa0202880:intron | 50.0% | |
| GGAAACTCTCCAAACATGGG+GGG | - | chr2_1:25769358-25769377 | Msa0202880:intron | 50.0% | |
| CGGTGATAGTTTCATCGGAC+AGG | - | chr2_1:25769445-25769464 | Msa0202880:intron | 50.0% | |
| TCGGACAGGCAAATCATCCT+TGG | - | chr2_1:25769459-25769478 | Msa0202880:intron | 50.0% | |
| GGAGGAACCTTGTTCACCCT+TGG | + | chr2_1:25768919-25768938 | None:intergenic | 55.0% | |
| GTTCCTCCCGTGATGACAAG+TGG | - | chr2_1:25768931-25768950 | Msa0202880:intron | 55.0% | |
| CTACCACTTGTCATCACGGG+AGG | + | chr2_1:25768937-25768956 | None:intergenic | 55.0% | |
| AACTCTCCAAACATGGGGGG+AGG | - | chr2_1:25769361-25769380 | Msa0202880:intron | 55.0% | |
| TGCAGTGGAGGACTCGCATT+TGG | - | chr2_1:25769394-25769413 | Msa0202880:intron | 55.0% | |
| AGTGGAGGACTCGCATTTGG+CGG | - | chr2_1:25769397-25769416 | Msa0202880:intron | 55.0% | |
| AGCAACGCGCTTCTGTTGTC+CGG | - | chr2_1:25769425-25769444 | Msa0202880:intron | 55.0% | |
| !! | GGAGGAGCACCACAATGCAG+TGG | - | chr2_1:25769379-25769398 | Msa0202880:intron | 60.0% |
| ! | GGAGCACCACAATGCAGTGG+AGG | - | chr2_1:25769382-25769401 | Msa0202880:intron | 60.0% |
| GCGAGTCCTCCACTGCATTG+TGG | + | chr2_1:25769391-25769410 | None:intergenic | 60.0% | |
| GGTGCTCCTCCCCCCATGTT+TGG | + | chr2_1:25769370-25769389 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_1 | gene | 25766705 | 25769758 | 25766705 | ID=Msa0202880;Name=Msa0202880 |
| chr2_1 | mRNA | 25766705 | 25769758 | 25766705 | ID=Msa0202880-mRNA-1;Parent=Msa0202880;Name=Msa0202880-mRNA-1;_AED=0.09;_eAED=0.09;_QI=234|1|1|1|0.75|0.6|5|308|235 |
| chr2_1 | exon | 25766705 | 25767387 | 25766705 | ID=Msa0202880-mRNA-1:exon:9782;Parent=Msa0202880-mRNA-1 |
| chr2_1 | exon | 25767700 | 25767879 | 25767700 | ID=Msa0202880-mRNA-1:exon:9781;Parent=Msa0202880-mRNA-1 |
| chr2_1 | exon | 25768036 | 25768113 | 25768036 | ID=Msa0202880-mRNA-1:exon:9780;Parent=Msa0202880-mRNA-1 |
| chr2_1 | exon | 25768190 | 25768418 | 25768190 | ID=Msa0202880-mRNA-1:exon:9779;Parent=Msa0202880-mRNA-1 |
| chr2_1 | exon | 25769679 | 25769758 | 25769679 | ID=Msa0202880-mRNA-1:exon:9778;Parent=Msa0202880-mRNA-1 |
| chr2_1 | five_prime_UTR | 25769679 | 25769758 | 25769679 | ID=Msa0202880-mRNA-1:five_prime_utr;Parent=Msa0202880-mRNA-1 |
| chr2_1 | five_prime_UTR | 25768265 | 25768418 | 25768265 | ID=Msa0202880-mRNA-1:five_prime_utr;Parent=Msa0202880-mRNA-1 |
| chr2_1 | CDS | 25768190 | 25768264 | 25768190 | ID=Msa0202880-mRNA-1:cds;Parent=Msa0202880-mRNA-1 |
| chr2_1 | CDS | 25768036 | 25768113 | 25768036 | ID=Msa0202880-mRNA-1:cds;Parent=Msa0202880-mRNA-1 |
| chr2_1 | CDS | 25767700 | 25767879 | 25767700 | ID=Msa0202880-mRNA-1:cds;Parent=Msa0202880-mRNA-1 |
| chr2_1 | CDS | 25767013 | 25767387 | 25767013 | ID=Msa0202880-mRNA-1:cds;Parent=Msa0202880-mRNA-1 |
| chr2_1 | three_prime_UTR | 25766705 | 25767012 | 25766705 | ID=Msa0202880-mRNA-1:three_prime_utr;Parent=Msa0202880-mRNA-1 |
| Gene Sequence |
| Protein sequence |
