Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0195820 | MCI23143.1 | 69.136 | 81 | 16 | 3 | 42 | 122 | 25 | 96 | 1.40e-23 | 98.2 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0195820 | sp|Q9XQ94|GLNA2_MEDSA | 48.438 | 128 | 22 | 3 | 32 | 124 | 264 | 382 | 1.51e-25 | 102 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0195820 | A0A392QFH9 | 69.136 | 81 | 16 | 3 | 42 | 122 | 25 | 96 | 6.67e-24 | 98.2 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0002410 | Msa0195820 | 0.814105 | 1.825148e-51 | -8.615850e-47 |
| Msa0039330 | Msa0195820 | 0.816543 | 5.239885e-52 | -8.615850e-47 |
| Msa0074700 | Msa0195820 | 0.800052 | 1.727114e-48 | -8.615850e-47 |
| Msa0095560 | Msa0195820 | 0.812143 | 4.916616e-51 | -8.615850e-47 |
| Msa0101810 | Msa0195820 | -0.802074 | 6.666992e-49 | -8.615850e-47 |
| Msa0140780 | Msa0195820 | 0.816732 | 4.752986e-52 | -8.615850e-47 |
| Msa0188830 | Msa0195820 | 0.811667 | 6.242431e-51 | -8.615850e-47 |
| Msa0195820 | Msa0200260 | 0.810396 | 1.177233e-50 | -8.615850e-47 |
| Msa0195820 | Msa0202880 | 0.814274 | 1.674518e-51 | -8.615850e-47 |
| Msa0195820 | Msa0220580 | 0.801086 | 1.062972e-48 | -8.615850e-47 |
| Msa0195820 | Msa0221060 | 0.818998 | 1.462531e-52 | -8.615850e-47 |
| Msa0195820 | Msa0226250 | 0.812851 | 3.443530e-51 | -8.615850e-47 |
| Msa0195820 | Msa0237310 | 0.801200 | 1.007417e-48 | -8.615850e-47 |
| Msa0195820 | Msa0237660 | 0.900293 | 8.465396e-78 | -8.615850e-47 |
| Msa0195820 | Msa0243100 | 0.813330 | 2.703862e-51 | -8.615850e-47 |
| Msa0195820 | Msa0245980 | 0.814108 | 1.822392e-51 | -8.615850e-47 |
| Msa0195820 | Msa0262520 | 0.827218 | 1.766517e-54 | -8.615850e-47 |
| Msa0195820 | Msa0265380 | 0.803719 | 3.047742e-49 | -8.615850e-47 |
| Msa0195820 | Msa0270100 | 0.802049 | 6.746974e-49 | -8.615850e-47 |
| Msa0195820 | Msa0272730 | 0.811707 | 6.117689e-51 | -8.615850e-47 |
| Msa0195820 | Msa0274730 | 0.800850 | 1.187531e-48 | -8.615850e-47 |
| Msa0195820 | Msa0282250 | 0.802188 | 6.314742e-49 | -8.615850e-47 |
| Msa0195820 | Msa0284550 | 0.819329 | 1.229763e-52 | -8.615850e-47 |
| Msa0195820 | Msa0285450 | 0.806467 | 8.111481e-50 | -8.615850e-47 |
| Msa0195820 | Msa0287650 | 0.801368 | 9.306491e-49 | -8.615850e-47 |
| Msa0195820 | Msa0294950 | 0.818624 | 1.778975e-52 | -8.615850e-47 |
| Msa0195820 | Msa0294960 | 0.810435 | 1.154652e-50 | -8.615850e-47 |
| Msa0195820 | Msa0306210 | -0.801010 | 1.101788e-48 | -8.615850e-47 |
| Msa0195820 | Msa0315530 | 0.803896 | 2.801295e-49 | -8.615850e-47 |
| Msa0195820 | Msa0315730 | 0.911270 | 7.352626e-83 | -8.615850e-47 |
| Msa0195820 | Msa0331920 | 0.809853 | 1.540983e-50 | -8.615850e-47 |
| Msa0195820 | Msa0333720 | -0.811547 | 6.627755e-51 | -8.615850e-47 |
| Msa0195820 | Msa0338110 | 0.829854 | 4.076474e-55 | -8.615850e-47 |
| Msa0195820 | Msa0344690 | -0.813860 | 2.066904e-51 | -8.615850e-47 |
| Msa0195820 | Msa0373930 | 0.816359 | 5.758965e-52 | -8.615850e-47 |
| Msa0195820 | Msa0376590 | 0.823375 | 1.433087e-53 | -8.615850e-47 |
| Msa0195820 | Msa0379640 | 0.834676 | 2.612237e-56 | -8.615850e-47 |
| Msa0195820 | Msa0389340 | 0.811035 | 8.560754e-51 | -8.615850e-47 |
| Msa0195820 | Msa0390400 | -0.823736 | 1.179681e-53 | -8.615850e-47 |
| Msa0195820 | Msa0392040 | -0.801673 | 8.059691e-49 | -8.615850e-47 |
| Msa0195820 | Msa0428930 | 0.811011 | 8.665836e-51 | -8.615850e-47 |
| Msa0195820 | Msa0436370 | 0.814624 | 1.401075e-51 | -8.615850e-47 |
| Msa0195820 | Msa0439970 | 0.804130 | 2.504089e-49 | -8.615850e-47 |
| Msa0195820 | Msa0444750 | -0.812090 | 5.050554e-51 | -8.615850e-47 |
| Msa0195820 | Msa0469940 | -0.804950 | 1.689069e-49 | -8.615850e-47 |
| Msa0195820 | Msa0475490 | 0.829148 | 6.053857e-55 | -8.615850e-47 |
| Msa0195820 | Msa0515010 | 0.800637 | 1.312443e-48 | -8.615850e-47 |
| Msa0195820 | Msa0516370 | 0.816166 | 6.362633e-52 | -8.615850e-47 |
| Msa0195820 | Msa0535210 | 0.804452 | 2.145536e-49 | -8.615850e-47 |
| Msa0195820 | Msa0553460 | 0.819535 | 1.103551e-52 | -8.615850e-47 |
| Msa0195820 | Msa0555020 | 0.834768 | 2.475930e-56 | -8.615850e-47 |
| Msa0195820 | Msa0567020 | 0.818362 | 2.039616e-52 | -8.615850e-47 |
| Msa0195820 | Msa0572480 | 0.820731 | 5.873105e-53 | -8.615850e-47 |
| Msa0195820 | Msa0599890 | 0.827242 | 1.742899e-54 | -8.615850e-47 |
| Msa0195820 | Msa0607540 | 0.827094 | 1.891352e-54 | -8.615850e-47 |
| Msa0195820 | Msa0610890 | 0.800260 | 1.566488e-48 | -8.615850e-47 |
| Msa0195820 | Msa0626190 | 0.803499 | 3.386102e-49 | -8.615850e-47 |
| Msa0195820 | Msa0647830 | 0.809946 | 1.471266e-50 | -8.615850e-47 |
| Msa0195820 | Msa0648880 | 0.821317 | 4.306815e-53 | -8.615850e-47 |
| Msa0195820 | Msa0657610 | 0.831832 | 1.334517e-55 | -8.615850e-47 |
| Msa0195820 | Msa0657970 | 0.806746 | 7.081453e-50 | -8.615850e-47 |
| Msa0195820 | Msa0658570 | 0.839429 | 1.593270e-57 | -8.615850e-47 |
| Msa0195820 | Msa0661190 | -0.808309 | 3.298944e-50 | -8.615850e-47 |
| Msa0195820 | Msa0690440 | 0.807662 | 4.530749e-50 | -8.615850e-47 |
| Msa0195820 | Msa0691380 | 0.823935 | 1.059561e-53 | -8.615850e-47 |
| Msa0195820 | Msa0692230 | 0.830072 | 3.607059e-55 | -8.615850e-47 |
| Msa0195820 | Msa0696640 | 0.800710 | 1.268526e-48 | -8.615850e-47 |
| Msa0195820 | Msa0701900 | 0.810135 | 1.339848e-50 | -8.615850e-47 |
| Msa0195820 | Msa0703490 | 0.816853 | 4.463935e-52 | -8.615850e-47 |
| Msa0195820 | Msa0731940 | 0.801757 | 7.746495e-49 | -8.615850e-47 |
| Msa0195820 | Msa0790510 | 0.825844 | 3.756417e-54 | -8.615850e-47 |
| Msa0195820 | Msa0807030 | 0.806326 | 8.687153e-50 | -8.615850e-47 |
| Msa0195820 | Msa0820770 | 0.804160 | 2.468441e-49 | -8.615850e-47 |
| Msa0195820 | Msa0842620 | 0.803330 | 3.670635e-49 | -8.615850e-47 |
| Msa0195820 | Msa0844240 | 0.811196 | 7.899665e-51 | -8.615850e-47 |
| Msa0195820 | Msa0876850 | -0.824955 | 6.096817e-54 | -8.615850e-47 |
| Msa0195820 | Msa0885280 | 0.801825 | 7.498942e-49 | -8.615850e-47 |
| Msa0195820 | Msa0909620 | 0.804050 | 2.602399e-49 | -8.615850e-47 |
| Msa0195820 | Msa0925810 | 0.812112 | 4.994385e-51 | -8.615850e-47 |
| Msa0195820 | Msa0926890 | 0.805123 | 1.553609e-49 | -8.615850e-47 |
| Msa0195820 | Msa0935670 | 0.805496 | 1.297973e-49 | -8.615850e-47 |
| Msa0195820 | Msa0935910 | 0.802862 | 4.587092e-49 | -8.615850e-47 |
| Msa0195820 | Msa0942080 | -0.830342 | 3.099029e-55 | -8.615850e-47 |
| Msa0195820 | Msa0976670 | 0.804763 | 1.848022e-49 | -8.615850e-47 |
| Msa0195820 | Msa0993290 | 0.800937 | 1.139950e-48 | -8.615850e-47 |
| Msa0195820 | Msa0993600 | 0.800898 | 1.161078e-48 | -8.615850e-47 |
| Msa0195820 | Msa1001200 | 0.835265 | 1.855693e-56 | -8.615850e-47 |
| Msa0195820 | Msa1003620 | 0.800982 | 1.116305e-48 | -8.615850e-47 |
| Msa0195820 | Msa1014540 | 0.812414 | 4.291783e-51 | -8.615850e-47 |
| Msa0195820 | Msa1041730 | 0.828448 | 8.942370e-55 | -8.615850e-47 |
| Msa0195820 | Msa1075080 | -0.819606 | 1.063212e-52 | -8.615850e-47 |
| Msa0195820 | Msa1075220 | -0.861314 | 1.118895e-63 | -8.615850e-47 |
| Msa0195820 | Msa1080160 | 0.803989 | 2.678286e-49 | -8.615850e-47 |
| Msa0195820 | Msa1082500 | 0.809816 | 1.569240e-50 | -8.615850e-47 |
| Msa0195820 | Msa1084260 | 0.802377 | 5.776059e-49 | -8.615850e-47 |
| Msa0195820 | Msa1090260 | 0.806510 | 7.942321e-50 | -8.615850e-47 |
| Msa0195820 | Msa1116130 | -0.862171 | 6.121600e-64 | -8.615850e-47 |
| Msa0195820 | Msa1124540 | -0.800429 | 1.447322e-48 | -8.615850e-47 |
| Msa0195820 | Msa1125080 | 0.809196 | 2.132279e-50 | -8.615850e-47 |
| Msa0195820 | Msa1139000 | -0.860224 | 2.396840e-63 | -8.615850e-47 |
| Msa0195820 | Msa1144720 | -0.800716 | 1.264804e-48 | -8.615850e-47 |
| Msa0195820 | Msa1154280 | 0.801285 | 9.677685e-49 | -8.615850e-47 |
| Msa0195820 | Msa1162550 | -0.858730 | 6.740198e-63 | -8.615850e-47 |
| Msa0195820 | Msa1166500 | -0.804675 | 1.927530e-49 | -8.615850e-47 |
| Msa0195820 | Msa1167220 | 0.833239 | 5.977576e-56 | -8.615850e-47 |
| Msa0195820 | Msa1205130 | 0.818954 | 1.496668e-52 | -8.615850e-47 |
| Msa0195820 | Msa1228210 | 0.810365 | 1.195368e-50 | -8.615850e-47 |
| Msa0195820 | Msa1233890 | 0.800807 | 1.211691e-48 | -8.615850e-47 |
| Msa0195820 | Msa1242220 | 0.810564 | 1.082772e-50 | -8.615850e-47 |
| Msa0195820 | Msa1246500 | 0.801514 | 8.687753e-49 | -8.615850e-47 |
| Msa0195820 | Msa1265340 | -0.801861 | 7.373434e-49 | -8.615850e-47 |
| Msa0195820 | Msa1267610 | 0.809951 | 1.467785e-50 | -8.615850e-47 |
| Msa0195820 | Msa1271280 | 0.801602 | 8.332500e-49 | -8.615850e-47 |
| Msa0195820 | Msa1271300 | 0.805782 | 1.130574e-49 | -8.615850e-47 |
| Msa0195820 | Msa1283860 | 0.812325 | 4.488348e-51 | -8.615850e-47 |
| Msa0195820 | Msa1318990 | 0.800767 | 1.235215e-48 | -8.615850e-47 |
| Msa0195820 | Msa1322890 | 0.818507 | 1.891211e-52 | -8.615850e-47 |
| Msa0195820 | Msa1340650 | 0.807409 | 5.126936e-50 | -8.615850e-47 |
| Msa0195820 | Msa1357530 | 0.806292 | 8.828191e-50 | -8.615850e-47 |
| Msa0195820 | Msa1359040 | 0.804923 | 1.711235e-49 | -8.615850e-47 |
| Msa0195820 | Msa1372760 | 0.811236 | 7.745494e-51 | -8.615850e-47 |
| Msa0195820 | Msa1376890 | 0.834136 | 3.568532e-56 | -8.615850e-47 |
| Msa0195820 | Msa1379850 | 0.813092 | 3.048548e-51 | -8.615850e-47 |
| Msa0195820 | Msa1384350 | 0.829174 | 5.966124e-55 | -8.615850e-47 |
| Msa0195820 | Msa1390050 | 0.802632 | 5.116419e-49 | -8.615850e-47 |
| Msa0195820 | Msa1392260 | 0.821873 | 3.203744e-53 | -8.615850e-47 |
| Msa0195820 | Msa1394540 | 0.827392 | 1.605120e-54 | -8.615850e-47 |
| Msa0195820 | Msa1445610 | -0.819374 | 1.200815e-52 | -8.615850e-47 |
| Msa0195820 | Msa1451620 | -0.843974 | 1.007420e-58 | -8.615850e-47 |
| Msa0195820 | Msa1454120 | 0.837399 | 5.317484e-57 | -8.615850e-47 |
| Msa0195820 | Msa1461810 | -0.807757 | 4.324430e-50 | -8.615850e-47 |
| Msa0195820 | Msa1464940 | 0.823624 | 1.253049e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0195820 | MtrunA17_Chr2g0287211 | 47.656 | 128 | 23 | 3 | 32 | 124 | 264 | 382 | 1.72e-26 | 102 |
| Msa0195820 | MtrunA17_Chr2g0287181 | 60.241 | 83 | 24 | 2 | 42 | 124 | 309 | 382 | 1.00e-23 | 94.7 |
| Msa0195820 | MtrunA17_Chr6g0479141 | 47.368 | 114 | 42 | 5 | 11 | 124 | 231 | 326 | 2.03e-20 | 85.1 |
| Msa0195820 | MtrunA17_Chr3g0110261 | 45.946 | 111 | 42 | 3 | 11 | 121 | 231 | 323 | 1.45e-18 | 80.1 |
| Msa0195820 | MtrunA17_Chr5g0434471 | 45.045 | 111 | 43 | 5 | 11 | 121 | 232 | 324 | 9.80e-18 | 77.8 |
| Msa0195820 | MtrunA17_Chr8g0364341 | 74.419 | 43 | 11 | 0 | 42 | 84 | 10 | 52 | 1.43e-15 | 67.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0195820 | AT5G35630.3 | 63.855 | 83 | 21 | 3 | 42 | 124 | 311 | 384 | 8.73e-24 | 95.5 |
| Msa0195820 | AT5G35630.2 | 63.855 | 83 | 21 | 3 | 42 | 124 | 311 | 384 | 8.73e-24 | 95.5 |
| Msa0195820 | AT5G35630.1 | 63.855 | 83 | 21 | 3 | 42 | 124 | 311 | 384 | 8.73e-24 | 95.5 |
| Msa0195820 | AT5G16570.1 | 60.000 | 80 | 23 | 1 | 42 | 121 | 253 | 323 | 2.47e-21 | 88.2 |
| Msa0195820 | AT5G37600.1 | 47.368 | 114 | 42 | 4 | 11 | 124 | 231 | 326 | 6.00e-21 | 87.0 |
| Msa0195820 | AT3G17820.1 | 47.368 | 114 | 42 | 5 | 11 | 124 | 231 | 326 | 8.50e-21 | 86.7 |
| Msa0195820 | AT1G66200.1 | 45.614 | 114 | 44 | 3 | 11 | 124 | 231 | 326 | 6.25e-20 | 84.3 |
| Msa0195820 | AT1G66200.3 | 45.614 | 114 | 44 | 3 | 11 | 124 | 240 | 335 | 7.64e-20 | 84.0 |
| Msa0195820 | AT1G48470.1 | 42.105 | 114 | 48 | 4 | 11 | 124 | 231 | 326 | 2.09e-17 | 77.4 |
Find 40 sgRNAs with CRISPR-Local
Find 184 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTAAAGCTAGTGATCATATT+TGG | 0.164932 | 2_1:-12780662 | Msa0195820:CDS |
| GAAAATAAGAATTTGGTCTA+TGG | 0.304887 | 2_1:-12780700 | Msa0195820:CDS |
| CTGCAAAACCGCATTGTTGC+TGG | 0.360494 | 2_1:-12781068 | Msa0195820:five_prime_UTR |
| TAAAGCTAGTGATCATATTT+GGG | 0.364379 | 2_1:-12780661 | Msa0195820:CDS |
| AATCGTAGAAAATAAGAATT+TGG | 0.367337 | 2_1:-12780707 | Msa0195820:intron |
| ACAAAGAGTATGAGGGAAGA+TGG | 0.386116 | 2_1:-12780212 | Msa0195820:CDS |
| TTAACAAACATACAAGTGAT+TGG | 0.390013 | 2_1:+12781127 | None:intergenic |
| CCAATAATGCTGTTATCATA+TGG | 0.403134 | 2_1:+12779631 | None:intergenic |
| GAGGGAAGATGGAGGATTTG+AGG | 0.409547 | 2_1:-12780201 | Msa0195820:CDS |
| GTGATCATATTTGGGCTTCA+AGG | 0.422348 | 2_1:-12780653 | Msa0195820:intron |
| TGTCTTGATTGTAGGTTACT+TGG | 0.424146 | 2_1:-12779683 | Msa0195820:intron |
| TAACAAACATACAAGTGATT+GGG | 0.425802 | 2_1:+12781128 | None:intergenic |
| CATAACATCGAATTCCAATC+TGG | 0.435804 | 2_1:+12781151 | None:intergenic |
| CACACACACACGCAGTGGTT+TGG | 0.467443 | 2_1:-12781178 | Msa0195820:five_prime_UTR |
| CAGGCGTCTGGCTTCGAACA+TGG | 0.479083 | 2_1:-12779656 | Msa0195820:CDS |
| TTGTAGGTTACTTGGAAGAC+AGG | 0.491910 | 2_1:-12779675 | Msa0195820:intron |
| TTACTTGGAAGACAGGCGTC+TGG | 0.507417 | 2_1:-12779668 | Msa0195820:CDS |
| TGCTGGGATGTCTGAAGCAA+TGG | 0.529796 | 2_1:-12781051 | Msa0195820:exon |
| GAATCTATCCCTTCGTCACA+AGG | 0.532243 | 2_1:-12780159 | Msa0195820:CDS |
| AGGATTTGAGGTAATAAAGA+AGG | 0.535229 | 2_1:-12780189 | Msa0195820:CDS |
| CCAATAAAATGTGTTGATGC+TGG | 0.546412 | 2_1:+12780075 | None:intergenic |
| CACATTGAAGCATACGGAGA+AGG | 0.554607 | 2_1:-12780134 | Msa0195820:CDS |
| TGCAAAACCGCATTGTTGCT+GGG | 0.560499 | 2_1:-12781067 | Msa0195820:five_prime_UTR |
| AAGAGTATGAGGGAAGATGG+AGG | 0.561153 | 2_1:-12780209 | Msa0195820:CDS |
| ACACATTACCATTGGGATGG+TGG | 0.576682 | 2_1:+12781001 | None:intergenic |
| CAATGTGGACCTTGTGACGA+AGG | 0.583073 | 2_1:+12780150 | None:intergenic |
| CCACACAGATCGAGCATCCA+CGG | 0.597316 | 2_1:+12779932 | None:intergenic |
| AAGGTCCACATTGAAGCATA+CGG | 0.598182 | 2_1:-12780140 | Msa0195820:CDS |
| AATGTGGACCTTGTGACGAA+GGG | 0.601964 | 2_1:+12780151 | None:intergenic |
| GCTGGGATGTCTGAAGCAAT+GGG | 0.603554 | 2_1:-12781050 | Msa0195820:exon |
| GAGACAGAGAAGAACAGCAA+AGG | 0.605496 | 2_1:-12779906 | Msa0195820:intron |
| ATCATTCTCCACCATCCCAA+TGG | 0.623318 | 2_1:-12781009 | Msa0195820:intron |
| CCGTGGATGCTCGATCTGTG+TGG | 0.630861 | 2_1:-12779932 | Msa0195820:CDS |
| CTTCTCCGTATGCTTCAATG+TGG | 0.632247 | 2_1:+12780135 | None:intergenic |
| CGTGGATGCTCGATCTGTGT+GGG | 0.635126 | 2_1:-12779931 | Msa0195820:CDS |
| GAAACACATTACCATTGGGA+TGG | 0.642994 | 2_1:+12780998 | None:intergenic |
| ACGGAGAAGGAAATGAGAGA+AGG | 0.644942 | 2_1:-12780121 | Msa0195820:CDS |
| GTGCAGGGAGTTGCTAACCG+TGG | 0.715157 | 2_1:-12779949 | Msa0195820:intron |
| CAGACATCCCAGCAACAATG+CGG | 0.724672 | 2_1:+12781060 | None:intergenic |
| TGTGTGTGTATTGAAATGCA+TGG | 0.735425 | 2_1:+12781203 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTATTATTATTATTTAATAA+TGG | - | chr2_1:12780026-12780045 | Msa0195820:intron | 0.0% |
| !! | TTATTATTATTATTTAATAA+TGG | - | chr2_1:12780026-12780045 | Msa0195820:intron | 0.0% |
| !!! | TAATTCTTTTTATATGAATA+TGG | - | chr2_1:12780146-12780165 | Msa0195820:CDS | 10.0% |
| !!! | ATTAATTTTACTAATTGTTT+TGG | - | chr2_1:12780507-12780526 | Msa0195820:intron | 10.0% |
| !!! | TAATTCTTTTTATATGAATA+TGG | - | chr2_1:12780146-12780165 | Msa0195820:CDS | 10.0% |
| !!! | ATTAATTTTACTAATTGTTT+TGG | - | chr2_1:12780507-12780526 | Msa0195820:intron | 10.0% |
| !! | TAGTAAAATTAATTAGCATA+AGG | + | chr2_1:12780500-12780519 | None:intergenic | 15.0% |
| !! | ATATATCTAAATGTTAACAA+TGG | + | chr2_1:12781040-12781059 | None:intergenic | 15.0% |
| !! | TAGTAAAATTAATTAGCATA+AGG | + | chr2_1:12780500-12780519 | None:intergenic | 15.0% |
| !! | ATATATCTAAATGTTAACAA+TGG | + | chr2_1:12781040-12781059 | None:intergenic | 15.0% |
| !! | TATAAAAAGAATTACAGTGT+TGG | + | chr2_1:12780140-12780159 | None:intergenic | 20.0% |
| !! | AATCGTAGAAAATAAGAATT+TGG | - | chr2_1:12780188-12780207 | Msa0195820:CDS | 20.0% |
| !!! | TATCTTTTAATAGAATAAGC+TGG | - | chr2_1:12780407-12780426 | Msa0195820:intron | 20.0% |
| !! | TAATAAAAAATGGCAACTAA+AGG | + | chr2_1:12780477-12780496 | None:intergenic | 20.0% |
| !! | TAGCATAAGGTAATAAAAAA+TGG | + | chr2_1:12780487-12780506 | None:intergenic | 20.0% |
| !! | CCGATAAAAAAACATATATA+CGG | + | chr2_1:12781135-12781154 | None:intergenic | 20.0% |
| !!! | CCGTATATATGTTTTTTTAT+CGG | - | chr2_1:12781132-12781151 | Msa0195820:five_prime_UTR | 20.0% |
| !! | TATAAAAAGAATTACAGTGT+TGG | + | chr2_1:12780140-12780159 | None:intergenic | 20.0% |
| !! | AATCGTAGAAAATAAGAATT+TGG | - | chr2_1:12780188-12780207 | Msa0195820:CDS | 20.0% |
| !!! | TATCTTTTAATAGAATAAGC+TGG | - | chr2_1:12780407-12780426 | Msa0195820:intron | 20.0% |
| !! | TAATAAAAAATGGCAACTAA+AGG | + | chr2_1:12780477-12780496 | None:intergenic | 20.0% |
| !! | TAGCATAAGGTAATAAAAAA+TGG | + | chr2_1:12780487-12780506 | None:intergenic | 20.0% |
| !! | CCGATAAAAAAACATATATA+CGG | + | chr2_1:12781135-12781154 | None:intergenic | 20.0% |
| !!! | CCGTATATATGTTTTTTTAT+CGG | - | chr2_1:12781132-12781151 | Msa0195820:five_prime_UTR | 20.0% |
| ! | TAACAAACATACAAGTGATT+GGG | + | chr2_1:12779770-12779789 | None:intergenic | 25.0% |
| ! | TTAACAAACATACAAGTGAT+TGG | + | chr2_1:12779771-12779790 | None:intergenic | 25.0% |
| ! | TAAAAAACATTAGTGAGAGA+GGG | + | chr2_1:12779927-12779946 | None:intergenic | 25.0% |
| ! | ATAAAAAACATTAGTGAGAG+AGG | + | chr2_1:12779928-12779947 | None:intergenic | 25.0% |
| ! | GAAAATAAGAATTTGGTCTA+TGG | - | chr2_1:12780195-12780214 | Msa0195820:CDS | 25.0% |
| ! | TTAAAGCTAGTGATCATATT+TGG | - | chr2_1:12780233-12780252 | Msa0195820:intron | 25.0% |
| ! | TAAAGCTAGTGATCATATTT+GGG | - | chr2_1:12780234-12780253 | Msa0195820:intron | 25.0% |
| ! | TAACACATTATTGAACCAAA+AGG | + | chr2_1:12780374-12780393 | None:intergenic | 25.0% |
| !!! | CTCAATTGATTTTGGATTAA+GGG | + | chr2_1:12780444-12780463 | None:intergenic | 25.0% |
| !!! | TATAGTACCTCAATTGATTT+TGG | + | chr2_1:12780452-12780471 | None:intergenic | 25.0% |
| !!! | TTTTTAGTACAAAGAGTATG+AGG | - | chr2_1:12780675-12780694 | Msa0195820:CDS | 25.0% |
| !!! | TTTTAGTACAAAGAGTATGA+GGG | - | chr2_1:12780676-12780695 | Msa0195820:CDS | 25.0% |
| ! | GTAAAACATTCTTATCTAGT+TGG | - | chr2_1:12780921-12780940 | Msa0195820:intron | 25.0% |
| ! | CATATATACGGTAATACTTA+TGG | + | chr2_1:12781123-12781142 | None:intergenic | 25.0% |
| ! | TAACAAACATACAAGTGATT+GGG | + | chr2_1:12779770-12779789 | None:intergenic | 25.0% |
| ! | TTAACAAACATACAAGTGAT+TGG | + | chr2_1:12779771-12779790 | None:intergenic | 25.0% |
| ! | TAAAAAACATTAGTGAGAGA+GGG | + | chr2_1:12779927-12779946 | None:intergenic | 25.0% |
| ! | ATAAAAAACATTAGTGAGAG+AGG | + | chr2_1:12779928-12779947 | None:intergenic | 25.0% |
| ! | GAAAATAAGAATTTGGTCTA+TGG | - | chr2_1:12780195-12780214 | Msa0195820:CDS | 25.0% |
| ! | TTAAAGCTAGTGATCATATT+TGG | - | chr2_1:12780233-12780252 | Msa0195820:intron | 25.0% |
| ! | TAAAGCTAGTGATCATATTT+GGG | - | chr2_1:12780234-12780253 | Msa0195820:intron | 25.0% |
| ! | TAACACATTATTGAACCAAA+AGG | + | chr2_1:12780374-12780393 | None:intergenic | 25.0% |
| !!! | CTCAATTGATTTTGGATTAA+GGG | + | chr2_1:12780444-12780463 | None:intergenic | 25.0% |
| !!! | TATAGTACCTCAATTGATTT+TGG | + | chr2_1:12780452-12780471 | None:intergenic | 25.0% |
| !!! | TTTTTAGTACAAAGAGTATG+AGG | - | chr2_1:12780675-12780694 | Msa0195820:CDS | 25.0% |
| !!! | TTTTAGTACAAAGAGTATGA+GGG | - | chr2_1:12780676-12780695 | Msa0195820:CDS | 25.0% |
| ! | GTAAAACATTCTTATCTAGT+TGG | - | chr2_1:12780921-12780940 | Msa0195820:intron | 25.0% |
| ! | CATATATACGGTAATACTTA+TGG | + | chr2_1:12781123-12781142 | None:intergenic | 25.0% |
| AAAAAACATTAGTGAGAGAG+GGG | + | chr2_1:12779926-12779945 | None:intergenic | 30.0% | |
| !! | CCTCAATTGATTTTGGATTA+AGG | + | chr2_1:12780445-12780464 | None:intergenic | 30.0% |
| CCTTAATCCAAAATCAATTG+AGG | - | chr2_1:12780442-12780461 | Msa0195820:intron | 30.0% | |
| AATGTCAAAAAACCTGTCAT+TGG | + | chr2_1:12780578-12780597 | None:intergenic | 30.0% | |
| ! | AGGATTTGAGGTAATAAAGA+AGG | - | chr2_1:12780706-12780725 | Msa0195820:intron | 30.0% |
| ! | CAGCATCAACACATTTTATT+GGG | - | chr2_1:12780821-12780840 | Msa0195820:intron | 30.0% |
| ! | CTTGGTATTCATTCATTTTC+AGG | + | chr2_1:12781081-12781100 | None:intergenic | 30.0% |
| ! | TTTTACCACTAAAGTGATCT+TGG | + | chr2_1:12781099-12781118 | None:intergenic | 30.0% |
| GAACATATTGTCTTGATTGT+AGG | - | chr2_1:12781204-12781223 | Msa0195820:five_prime_UTR | 30.0% | |
| AAAAAACATTAGTGAGAGAG+GGG | + | chr2_1:12779926-12779945 | None:intergenic | 30.0% | |
| !! | CCTCAATTGATTTTGGATTA+AGG | + | chr2_1:12780445-12780464 | None:intergenic | 30.0% |
| CCTTAATCCAAAATCAATTG+AGG | - | chr2_1:12780442-12780461 | Msa0195820:intron | 30.0% | |
| AATGTCAAAAAACCTGTCAT+TGG | + | chr2_1:12780578-12780597 | None:intergenic | 30.0% | |
| ! | AGGATTTGAGGTAATAAAGA+AGG | - | chr2_1:12780706-12780725 | Msa0195820:intron | 30.0% |
| ! | CAGCATCAACACATTTTATT+GGG | - | chr2_1:12780821-12780840 | Msa0195820:intron | 30.0% |
| ! | CTTGGTATTCATTCATTTTC+AGG | + | chr2_1:12781081-12781100 | None:intergenic | 30.0% |
| ! | TTTTACCACTAAAGTGATCT+TGG | + | chr2_1:12781099-12781118 | None:intergenic | 30.0% |
| GAACATATTGTCTTGATTGT+AGG | - | chr2_1:12781204-12781223 | Msa0195820:five_prime_UTR | 30.0% | |
| TGTGTGTGTATTGAAATGCA+TGG | + | chr2_1:12779695-12779714 | None:intergenic | 35.0% | |
| CATAACATCGAATTCCAATC+TGG | + | chr2_1:12779747-12779766 | None:intergenic | 35.0% | |
| TCAAATTTGAATCCTATCCG+AGG | - | chr2_1:12780095-12780114 | Msa0195820:CDS | 35.0% | |
| ! | CTTAATTCTGTAGAGCCTTT+TGG | - | chr2_1:12780356-12780375 | Msa0195820:intron | 35.0% |
| ! | CCAATAAAATGTGTTGATGC+TGG | + | chr2_1:12780823-12780842 | None:intergenic | 35.0% |
| ! | CCAGCATCAACACATTTTAT+TGG | - | chr2_1:12780820-12780839 | Msa0195820:intron | 35.0% |
| GAATACCAAGATCACTTTAG+TGG | - | chr2_1:12781091-12781110 | Msa0195820:five_prime_UTR | 35.0% | |
| TGTCTTGATTGTAGGTTACT+TGG | - | chr2_1:12781212-12781231 | Msa0195820:five_prime_UTR | 35.0% | |
| TGTGTGTGTATTGAAATGCA+TGG | + | chr2_1:12779695-12779714 | None:intergenic | 35.0% | |
| CATAACATCGAATTCCAATC+TGG | + | chr2_1:12779747-12779766 | None:intergenic | 35.0% | |
| TCAAATTTGAATCCTATCCG+AGG | - | chr2_1:12780095-12780114 | Msa0195820:CDS | 35.0% | |
| ! | CTTAATTCTGTAGAGCCTTT+TGG | - | chr2_1:12780356-12780375 | Msa0195820:intron | 35.0% |
| ! | CCAATAAAATGTGTTGATGC+TGG | + | chr2_1:12780823-12780842 | None:intergenic | 35.0% |
| ! | CCAGCATCAACACATTTTAT+TGG | - | chr2_1:12780820-12780839 | Msa0195820:intron | 35.0% |
| GAATACCAAGATCACTTTAG+TGG | - | chr2_1:12781091-12781110 | Msa0195820:five_prime_UTR | 35.0% | |
| TGTCTTGATTGTAGGTTACT+TGG | - | chr2_1:12781212-12781231 | Msa0195820:five_prime_UTR | 35.0% | |
| !!! | AGTGGTTTGGTTTTCCAGAT+TGG | - | chr2_1:12779730-12779749 | Msa0195820:intron | 40.0% |
| GAAACACATTACCATTGGGA+TGG | + | chr2_1:12779900-12779919 | None:intergenic | 40.0% | |
| GTGGGAAACACATTACCATT+GGG | + | chr2_1:12779904-12779923 | None:intergenic | 40.0% | |
| AATAATGGCTTTCTACGTGC+AGG | - | chr2_1:12780041-12780060 | Msa0195820:intron | 40.0% | |
| ATTGAAAACGTGCACTTCCT+CGG | + | chr2_1:12780115-12780134 | None:intergenic | 40.0% | |
| GTGATCATATTTGGGCTTCA+AGG | - | chr2_1:12780242-12780261 | Msa0195820:intron | 40.0% | |
| GGTTACGGAAAATTACCTCA+AGG | + | chr2_1:12780273-12780292 | None:intergenic | 40.0% | |
| CTACTGTGACAAGTAGGTTA+CGG | + | chr2_1:12780288-12780307 | None:intergenic | 40.0% | |
| ACCTACTTGTCACAGTAGAA+AGG | - | chr2_1:12780290-12780309 | Msa0195820:intron | 40.0% | |
| TTGAACCTTGATAGAGTGAC+TGG | - | chr2_1:12780531-12780550 | Msa0195820:intron | 40.0% | |
| ! | ACAAAGAGTATGAGGGAAGA+TGG | - | chr2_1:12780683-12780702 | Msa0195820:CDS | 40.0% |
| AAGGTCCACATTGAAGCATA+CGG | - | chr2_1:12780755-12780774 | Msa0195820:intron | 40.0% | |
| TCTTATCTAGTTGGTTGTGC+AGG | - | chr2_1:12780930-12780949 | Msa0195820:intron | 40.0% | |
| CTTATCTAGTTGGTTGTGCA+GGG | - | chr2_1:12780931-12780950 | Msa0195820:intron | 40.0% | |
| TTGTAGGTTACTTGGAAGAC+AGG | - | chr2_1:12781220-12781239 | Msa0195820:five_prime_UTR | 40.0% | |
| !!! | AGTGGTTTGGTTTTCCAGAT+TGG | - | chr2_1:12779730-12779749 | Msa0195820:intron | 40.0% |
| GAAACACATTACCATTGGGA+TGG | + | chr2_1:12779900-12779919 | None:intergenic | 40.0% | |
| GTGGGAAACACATTACCATT+GGG | + | chr2_1:12779904-12779923 | None:intergenic | 40.0% | |
| AATAATGGCTTTCTACGTGC+AGG | - | chr2_1:12780041-12780060 | Msa0195820:intron | 40.0% | |
| ATTGAAAACGTGCACTTCCT+CGG | + | chr2_1:12780115-12780134 | None:intergenic | 40.0% | |
| GTGATCATATTTGGGCTTCA+AGG | - | chr2_1:12780242-12780261 | Msa0195820:intron | 40.0% | |
| GGTTACGGAAAATTACCTCA+AGG | + | chr2_1:12780273-12780292 | None:intergenic | 40.0% | |
| CTACTGTGACAAGTAGGTTA+CGG | + | chr2_1:12780288-12780307 | None:intergenic | 40.0% | |
| ACCTACTTGTCACAGTAGAA+AGG | - | chr2_1:12780290-12780309 | Msa0195820:intron | 40.0% | |
| TTGAACCTTGATAGAGTGAC+TGG | - | chr2_1:12780531-12780550 | Msa0195820:intron | 40.0% | |
| ! | ACAAAGAGTATGAGGGAAGA+TGG | - | chr2_1:12780683-12780702 | Msa0195820:CDS | 40.0% |
| AAGGTCCACATTGAAGCATA+CGG | - | chr2_1:12780755-12780774 | Msa0195820:intron | 40.0% | |
| TCTTATCTAGTTGGTTGTGC+AGG | - | chr2_1:12780930-12780949 | Msa0195820:intron | 40.0% | |
| CTTATCTAGTTGGTTGTGCA+GGG | - | chr2_1:12780931-12780950 | Msa0195820:intron | 40.0% | |
| TTGTAGGTTACTTGGAAGAC+AGG | - | chr2_1:12781220-12781239 | Msa0195820:five_prime_UTR | 40.0% | |
| TGCAAAACCGCATTGTTGCT+GGG | - | chr2_1:12779828-12779847 | Msa0195820:intron | 45.0% | |
| ATCATTCTCCACCATCCCAA+TGG | - | chr2_1:12779886-12779905 | Msa0195820:intron | 45.0% | |
| ACACATTACCATTGGGATGG+TGG | + | chr2_1:12779897-12779916 | None:intergenic | 45.0% | |
| GGTGGGAAACACATTACCAT+TGG | + | chr2_1:12779905-12779924 | None:intergenic | 45.0% | |
| AACATTAGTGAGAGAGGGGT+GGG | + | chr2_1:12779922-12779941 | None:intergenic | 45.0% | |
| AAACATTAGTGAGAGAGGGG+TGG | + | chr2_1:12779923-12779942 | None:intergenic | 45.0% | |
| GCCTTTCTACTGTGACAAGT+AGG | + | chr2_1:12780294-12780313 | None:intergenic | 45.0% | |
| CCATTCCAGTCACTCTATCA+AGG | + | chr2_1:12780539-12780558 | None:intergenic | 45.0% | |
| CCTTGATAGAGTGACTGGAA+TGG | - | chr2_1:12780536-12780555 | Msa0195820:intron | 45.0% | |
| ! | AAGAGTATGAGGGAAGATGG+AGG | - | chr2_1:12780686-12780705 | Msa0195820:CDS | 45.0% |
| GAATCTATCCCTTCGTCACA+AGG | - | chr2_1:12780736-12780755 | Msa0195820:intron | 45.0% | |
| AATGTGGACCTTGTGACGAA+GGG | + | chr2_1:12780747-12780766 | None:intergenic | 45.0% | |
| CTTCTCCGTATGCTTCAATG+TGG | + | chr2_1:12780763-12780782 | None:intergenic | 45.0% | |
| CACATTGAAGCATACGGAGA+AGG | - | chr2_1:12780761-12780780 | Msa0195820:intron | 45.0% | |
| ACGGAGAAGGAAATGAGAGA+AGG | - | chr2_1:12780774-12780793 | Msa0195820:intron | 45.0% | |
| GAGACAGAGAAGAACAGCAA+AGG | - | chr2_1:12780989-12781008 | Msa0195820:intron | 45.0% | |
| TGCAAAACCGCATTGTTGCT+GGG | - | chr2_1:12779828-12779847 | Msa0195820:intron | 45.0% | |
| ATCATTCTCCACCATCCCAA+TGG | - | chr2_1:12779886-12779905 | Msa0195820:intron | 45.0% | |
| ACACATTACCATTGGGATGG+TGG | + | chr2_1:12779897-12779916 | None:intergenic | 45.0% | |
| GGTGGGAAACACATTACCAT+TGG | + | chr2_1:12779905-12779924 | None:intergenic | 45.0% | |
| AACATTAGTGAGAGAGGGGT+GGG | + | chr2_1:12779922-12779941 | None:intergenic | 45.0% | |
| AAACATTAGTGAGAGAGGGG+TGG | + | chr2_1:12779923-12779942 | None:intergenic | 45.0% | |
| GCCTTTCTACTGTGACAAGT+AGG | + | chr2_1:12780294-12780313 | None:intergenic | 45.0% | |
| CCATTCCAGTCACTCTATCA+AGG | + | chr2_1:12780539-12780558 | None:intergenic | 45.0% | |
| CCTTGATAGAGTGACTGGAA+TGG | - | chr2_1:12780536-12780555 | Msa0195820:intron | 45.0% | |
| ! | AAGAGTATGAGGGAAGATGG+AGG | - | chr2_1:12780686-12780705 | Msa0195820:CDS | 45.0% |
| GAATCTATCCCTTCGTCACA+AGG | - | chr2_1:12780736-12780755 | Msa0195820:intron | 45.0% | |
| AATGTGGACCTTGTGACGAA+GGG | + | chr2_1:12780747-12780766 | None:intergenic | 45.0% | |
| CTTCTCCGTATGCTTCAATG+TGG | + | chr2_1:12780763-12780782 | None:intergenic | 45.0% | |
| CACATTGAAGCATACGGAGA+AGG | - | chr2_1:12780761-12780780 | Msa0195820:intron | 45.0% | |
| ACGGAGAAGGAAATGAGAGA+AGG | - | chr2_1:12780774-12780793 | Msa0195820:intron | 45.0% | |
| GAGACAGAGAAGAACAGCAA+AGG | - | chr2_1:12780989-12781008 | Msa0195820:intron | 45.0% | |
| CTGCAAAACCGCATTGTTGC+TGG | - | chr2_1:12779827-12779846 | Msa0195820:intron | 50.0% | |
| CAGACATCCCAGCAACAATG+CGG | + | chr2_1:12779838-12779857 | None:intergenic | 50.0% | |
| ! | TGCTGGGATGTCTGAAGCAA+TGG | - | chr2_1:12779844-12779863 | Msa0195820:intron | 50.0% |
| ! | GCTGGGATGTCTGAAGCAAT+GGG | - | chr2_1:12779845-12779864 | Msa0195820:intron | 50.0% |
| AAACGTGCACTTCCTCGGAT+AGG | + | chr2_1:12780110-12780129 | None:intergenic | 50.0% | |
| GGCTTCAAGGTACATCCTTG+AGG | - | chr2_1:12780255-12780274 | Msa0195820:intron | 50.0% | |
| TAGAGTGACTGGAATGGTGC+AGG | - | chr2_1:12780542-12780561 | Msa0195820:intron | 50.0% | |
| GGATCTCACACACCAATGAC+AGG | - | chr2_1:12780563-12780582 | Msa0195820:intron | 50.0% | |
| GAGGGAAGATGGAGGATTTG+AGG | - | chr2_1:12780694-12780713 | Msa0195820:CDS | 50.0% | |
| CAATGTGGACCTTGTGACGA+AGG | + | chr2_1:12780748-12780767 | None:intergenic | 50.0% | |
| TTACTTGGAAGACAGGCGTC+TGG | - | chr2_1:12781227-12781246 | Msa0195820:five_prime_UTR | 50.0% | |
| CTGCAAAACCGCATTGTTGC+TGG | - | chr2_1:12779827-12779846 | Msa0195820:intron | 50.0% | |
| CAGACATCCCAGCAACAATG+CGG | + | chr2_1:12779838-12779857 | None:intergenic | 50.0% | |
| ! | TGCTGGGATGTCTGAAGCAA+TGG | - | chr2_1:12779844-12779863 | Msa0195820:intron | 50.0% |
| ! | GCTGGGATGTCTGAAGCAAT+GGG | - | chr2_1:12779845-12779864 | Msa0195820:intron | 50.0% |
| AAACGTGCACTTCCTCGGAT+AGG | + | chr2_1:12780110-12780129 | None:intergenic | 50.0% | |
| GGCTTCAAGGTACATCCTTG+AGG | - | chr2_1:12780255-12780274 | Msa0195820:intron | 50.0% | |
| TAGAGTGACTGGAATGGTGC+AGG | - | chr2_1:12780542-12780561 | Msa0195820:intron | 50.0% | |
| GGATCTCACACACCAATGAC+AGG | - | chr2_1:12780563-12780582 | Msa0195820:intron | 50.0% | |
| GAGGGAAGATGGAGGATTTG+AGG | - | chr2_1:12780694-12780713 | Msa0195820:CDS | 50.0% | |
| CAATGTGGACCTTGTGACGA+AGG | + | chr2_1:12780748-12780767 | None:intergenic | 50.0% | |
| TTACTTGGAAGACAGGCGTC+TGG | - | chr2_1:12781227-12781246 | Msa0195820:five_prime_UTR | 50.0% | |
| ACACACACACACACACGCAG+TGG | - | chr2_1:12779712-12779731 | Msa0195820:intron | 55.0% | |
| CACACACACACGCAGTGGTT+TGG | - | chr2_1:12779717-12779736 | Msa0195820:intron | 55.0% | |
| CCACACAGATCGAGCATCCA+CGG | + | chr2_1:12780966-12780985 | None:intergenic | 55.0% | |
| CGTGGATGCTCGATCTGTGT+GGG | - | chr2_1:12780964-12780983 | Msa0195820:intron | 55.0% | |
| ACACACACACACACACGCAG+TGG | - | chr2_1:12779712-12779731 | Msa0195820:intron | 55.0% | |
| CACACACACACGCAGTGGTT+TGG | - | chr2_1:12779717-12779736 | Msa0195820:intron | 55.0% | |
| CCACACAGATCGAGCATCCA+CGG | + | chr2_1:12780966-12780985 | None:intergenic | 55.0% | |
| CGTGGATGCTCGATCTGTGT+GGG | - | chr2_1:12780964-12780983 | Msa0195820:intron | 55.0% | |
| GTGCAGGGAGTTGCTAACCG+TGG | - | chr2_1:12780946-12780965 | Msa0195820:intron | 60.0% | |
| CCGTGGATGCTCGATCTGTG+TGG | - | chr2_1:12780963-12780982 | Msa0195820:intron | 60.0% | |
| ! | CAGGCGTCTGGCTTCGAACA+TGG | - | chr2_1:12781239-12781258 | Msa0195820:five_prime_UTR | 60.0% |
| GTGCAGGGAGTTGCTAACCG+TGG | - | chr2_1:12780946-12780965 | Msa0195820:intron | 60.0% | |
| CCGTGGATGCTCGATCTGTG+TGG | - | chr2_1:12780963-12780982 | Msa0195820:intron | 60.0% | |
| ! | CAGGCGTCTGGCTTCGAACA+TGG | - | chr2_1:12781239-12781258 | Msa0195820:five_prime_UTR | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_1 | gene | 12779646 | 12781271 | 12779646 | ID=Msa0195820;Name=Msa0195820 |
| chr2_1 | mRNA | 12779646 | 12781271 | 12779646 | ID=Msa0195820-mRNA-1;Parent=Msa0195820;Name=Msa0195820-mRNA-1;_AED=0.46;_eAED=0.54;_QI=205|0.25|0.4|1|0.75|0.6|5|0|138 |
| chr2_1 | exon | 12779646 | 12779691 | 12779646 | ID=Msa0195820-mRNA-1:exon:5643;Parent=Msa0195820-mRNA-1 |
| chr2_1 | exon | 12779907 | 12779965 | 12779907 | ID=Msa0195820-mRNA-1:exon:5642;Parent=Msa0195820-mRNA-1 |
| chr2_1 | exon | 12780049 | 12780235 | 12780049 | ID=Msa0195820-mRNA-1:exon:5641;Parent=Msa0195820-mRNA-1 |
| chr2_1 | exon | 12780654 | 12780721 | 12780654 | ID=Msa0195820-mRNA-1:exon:5640;Parent=Msa0195820-mRNA-1 |
| chr2_1 | exon | 12781010 | 12781271 | 12781010 | ID=Msa0195820-mRNA-1:exon:5639;Parent=Msa0195820-mRNA-1 |
| chr2_1 | five_prime_UTR | 12781067 | 12781271 | 12781067 | ID=Msa0195820-mRNA-1:five_prime_utr;Parent=Msa0195820-mRNA-1 |
| chr2_1 | CDS | 12781010 | 12781066 | 12781010 | ID=Msa0195820-mRNA-1:cds;Parent=Msa0195820-mRNA-1 |
| chr2_1 | CDS | 12780654 | 12780721 | 12780654 | ID=Msa0195820-mRNA-1:cds;Parent=Msa0195820-mRNA-1 |
| chr2_1 | CDS | 12780049 | 12780235 | 12780049 | ID=Msa0195820-mRNA-1:cds;Parent=Msa0195820-mRNA-1 |
| chr2_1 | CDS | 12779907 | 12779965 | 12779907 | ID=Msa0195820-mRNA-1:cds;Parent=Msa0195820-mRNA-1 |
| chr2_1 | CDS | 12779646 | 12779691 | 12779646 | ID=Msa0195820-mRNA-1:cds;Parent=Msa0195820-mRNA-1 |
| Gene Sequence |
| Protein sequence |
