Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0245980 | AFK49645.1 | 97.447 | 235 | 6 | 0 | 1 | 235 | 1 | 235 | 3.46e-170 | 478 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0245980 | sp|Q93ZH2|NFYA3_ARATH | 47.568 | 185 | 89 | 4 | 26 | 206 | 129 | 309 | 5.80e-41 | 145 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0245980 | I3TAV3 | 97.447 | 235 | 6 | 0 | 1 | 235 | 1 | 235 | 1.65e-170 | 478 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0245980 | TF | NF-YA |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0195820 | Msa0245980 | 0.814108 | 1.822392e-51 | -8.615850e-47 |
| Msa0202880 | Msa0245980 | 0.889508 | 2.274059e-73 | -8.615850e-47 |
| Msa0245980 | Msa0284550 | 0.998317 | 1.129252e-261 | -8.615850e-47 |
| Msa0245980 | Msa0344690 | -0.800357 | 1.497277e-48 | -8.615850e-47 |
| Msa0245980 | Msa0443290 | 0.824946 | 6.127015e-54 | -8.615850e-47 |
| Msa0245980 | Msa0490870 | 0.806150 | 9.457902e-50 | -8.615850e-47 |
| Msa0245980 | Msa0639670 | -0.800069 | 1.712904e-48 | -8.615850e-47 |
| Msa0245980 | Msa1001200 | 0.800201 | 1.610506e-48 | -8.615850e-47 |
| Msa0245980 | Msa1303200 | -0.807792 | 4.251277e-50 | -8.615850e-47 |
| Msa0245980 | Msa1394540 | 0.804824 | 1.794554e-49 | -8.615850e-47 |
| Msa0245980 | Msa1466810 | 0.805555 | 1.261457e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0245980 | MtrunA17_Chr2g0300261 | 97.447 | 235 | 6 | 0 | 1 | 235 | 1 | 235 | 3.18e-174 | 478 |
| Msa0245980 | MtrunA17_Chr8g0343451 | 46.907 | 194 | 92 | 6 | 11 | 204 | 103 | 285 | 2.22e-44 | 151 |
| Msa0245980 | MtrunA17_Chr2g0329811 | 51.007 | 149 | 61 | 4 | 6 | 145 | 108 | 253 | 7.94e-39 | 137 |
| Msa0245980 | MtrunA17_Chr3g0103391 | 53.731 | 134 | 45 | 5 | 23 | 156 | 123 | 239 | 5.42e-36 | 129 |
| Msa0245980 | MtrunA17_Chr8g0352251 | 54.472 | 123 | 49 | 3 | 33 | 153 | 114 | 231 | 2.84e-35 | 127 |
| Msa0245980 | MtrunA17_Chr2g0292411 | 53.774 | 106 | 46 | 2 | 59 | 162 | 95 | 199 | 2.63e-30 | 111 |
| Msa0245980 | MtrunA17_Chr1g0177091 | 45.775 | 142 | 61 | 3 | 5 | 145 | 105 | 231 | 1.38e-29 | 112 |
| Msa0245980 | MtrunA17_Chr7g0267581 | 54.630 | 108 | 33 | 4 | 32 | 138 | 134 | 226 | 1.87e-28 | 109 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0245980 | AT1G72830.1 | 47.568 | 185 | 89 | 4 | 26 | 206 | 129 | 309 | 5.90e-42 | 145 |
| Msa0245980 | AT1G72830.2 | 47.312 | 186 | 89 | 5 | 26 | 206 | 129 | 310 | 3.66e-40 | 141 |
| Msa0245980 | AT1G54160.1 | 68.367 | 98 | 29 | 1 | 47 | 142 | 145 | 242 | 1.74e-38 | 136 |
| Msa0245980 | AT1G17590.3 | 61.947 | 113 | 32 | 3 | 32 | 142 | 133 | 236 | 2.03e-38 | 136 |
| Msa0245980 | AT1G17590.2 | 61.947 | 113 | 32 | 3 | 32 | 142 | 133 | 236 | 2.03e-38 | 136 |
| Msa0245980 | AT1G17590.4 | 61.947 | 113 | 32 | 3 | 32 | 142 | 133 | 236 | 2.03e-38 | 136 |
| Msa0245980 | AT1G17590.1 | 61.947 | 113 | 32 | 3 | 32 | 142 | 133 | 236 | 2.03e-38 | 136 |
| Msa0245980 | AT3G14020.2 | 62.626 | 99 | 37 | 0 | 48 | 146 | 141 | 239 | 3.00e-35 | 127 |
| Msa0245980 | AT3G14020.1 | 62.626 | 99 | 37 | 0 | 48 | 146 | 141 | 239 | 3.00e-35 | 127 |
| Msa0245980 | AT1G30500.2 | 56.364 | 110 | 44 | 3 | 32 | 141 | 58 | 163 | 7.25e-34 | 120 |
| Msa0245980 | AT1G30500.1 | 56.364 | 110 | 40 | 3 | 32 | 141 | 58 | 159 | 8.59e-34 | 120 |
| Msa0245980 | AT2G34720.1 | 51.613 | 124 | 53 | 4 | 19 | 138 | 38 | 158 | 1.62e-33 | 120 |
| Msa0245980 | AT2G34720.2 | 52.586 | 116 | 50 | 3 | 25 | 138 | 11 | 123 | 3.85e-33 | 118 |
| Msa0245980 | AT2G34720.3 | 52.586 | 116 | 50 | 3 | 25 | 138 | 11 | 123 | 3.85e-33 | 118 |
| Msa0245980 | AT5G12840.4 | 53.271 | 107 | 45 | 2 | 33 | 139 | 131 | 232 | 3.01e-32 | 119 |
| Msa0245980 | AT5G12840.2 | 53.271 | 107 | 45 | 2 | 33 | 139 | 131 | 232 | 3.01e-32 | 119 |
| Msa0245980 | AT5G12840.5 | 53.271 | 107 | 45 | 2 | 33 | 139 | 132 | 233 | 3.45e-32 | 118 |
| Msa0245980 | AT5G12840.3 | 53.271 | 107 | 45 | 2 | 33 | 139 | 132 | 233 | 3.45e-32 | 118 |
| Msa0245980 | AT5G12840.1 | 53.271 | 107 | 45 | 2 | 33 | 139 | 132 | 233 | 3.45e-32 | 118 |
| Msa0245980 | AT3G20910.1 | 49.587 | 121 | 54 | 4 | 33 | 151 | 126 | 241 | 1.79e-30 | 115 |
| Msa0245980 | AT1G72830.3 | 42.162 | 185 | 74 | 5 | 26 | 206 | 129 | 284 | 3.07e-28 | 109 |
| Msa0245980 | AT5G06510.4 | 64.474 | 76 | 22 | 2 | 64 | 137 | 23 | 95 | 5.17e-25 | 97.4 |
| Msa0245980 | AT5G06510.7 | 64.474 | 76 | 22 | 2 | 64 | 137 | 23 | 95 | 5.17e-25 | 97.4 |
| Msa0245980 | AT5G06510.3 | 64.474 | 76 | 22 | 2 | 64 | 137 | 69 | 141 | 1.30e-24 | 97.4 |
| Msa0245980 | AT5G06510.1 | 64.474 | 76 | 22 | 2 | 64 | 137 | 118 | 190 | 1.54e-24 | 98.6 |
| Msa0245980 | AT5G06510.5 | 64.474 | 76 | 22 | 2 | 64 | 137 | 118 | 190 | 1.54e-24 | 98.6 |
| Msa0245980 | AT5G06510.2 | 64.474 | 76 | 22 | 2 | 64 | 137 | 118 | 190 | 1.54e-24 | 98.6 |
| Msa0245980 | AT5G06510.6 | 64.474 | 76 | 22 | 2 | 64 | 137 | 118 | 190 | 1.54e-24 | 98.6 |
| Msa0245980 | AT3G05690.1 | 49.123 | 114 | 37 | 4 | 29 | 137 | 102 | 199 | 5.27e-24 | 97.8 |
| Msa0245980 | AT3G05690.2 | 49.123 | 114 | 37 | 4 | 29 | 137 | 139 | 236 | 9.86e-24 | 97.4 |
Find 69 sgRNAs with CRISPR-Local
Find 169 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TATTGCTTACACTTGTCTTT+TGG | 0.230753 | 2_2:-26135553 | Msa0245980:three_prime_UTR |
| ACTTGTTGTTGGGTTGAAAT+TGG | 0.261072 | 2_2:+26138443 | None:intergenic |
| CCATCATTTGAGGCAACATT+TGG | 0.267754 | 2_2:+26136599 | None:intergenic |
| TTTGTCGCTGGTTCACATTC+TGG | 0.272296 | 2_2:-26136013 | Msa0245980:CDS |
| CAGCCAGAGCACATGTTTCT+TGG | 0.297173 | 2_2:-26135854 | Msa0245980:CDS |
| TGGCTTAATCACTTCGGTTT+CGG | 0.310800 | 2_2:-26135712 | Msa0245980:three_prime_UTR |
| CATGCTTTGAATAGAGTTAG+AGG | 0.318785 | 2_2:-26136088 | Msa0245980:CDS |
| TACATGTGAAAGTAATAAAA+AGG | 0.321877 | 2_2:+26135587 | None:intergenic |
| CATCATTTGAGGCAACATTT+GGG | 0.363234 | 2_2:+26136600 | None:intergenic |
| CTTGTTGTTGGGTTGAAATT+GGG | 0.377337 | 2_2:+26138444 | None:intergenic |
| GAGCAATTGAACTCGGTATC+AGG | 0.378172 | 2_2:+26136914 | None:intergenic |
| AGAAGTGTTGTACTTGTTGT+TGG | 0.382513 | 2_2:+26138432 | None:intergenic |
| CCAAATGTTGCCTCAAATGA+TGG | 0.389646 | 2_2:-26136599 | Msa0245980:CDS |
| CCTAAAACTGAAACTGTTGC+TGG | 0.404257 | 2_2:+26135877 | None:intergenic |
| TTGAATAGAGTTAGAGGATC+TGG | 0.407085 | 2_2:-26136082 | Msa0245980:CDS |
| GATCAATATATAATTTGCTT+TGG | 0.413092 | 2_2:-26135488 | Msa0245980:three_prime_UTR |
| TGCAGTGGAGGACTCGCATT+TGG | 0.418965 | 2_2:-26135797 | Msa0245980:CDS |
| GAGAGAGTACCTTTGGGATC+TGG | 0.431328 | 2_2:+26138376 | None:intergenic |
| CTCTATTCAAAGCATGTTTG+TGG | 0.437986 | 2_2:+26136095 | None:intergenic |
| GCTGTTTGGTGCTTAGAAAT+CGG | 0.443184 | 2_2:+26136056 | None:intergenic |
| TGGCGAGATTCGTGAAGATA+TGG | 0.445004 | 2_2:+26136115 | None:intergenic |
| GAAGTGTTGTACTTGTTGTT+GGG | 0.454031 | 2_2:+26138433 | None:intergenic |
| CCACTTGATCTTGCACAAGA+TGG | 0.459081 | 2_2:-26136550 | Msa0245980:CDS |
| ATTAGACTCTGAAAGCTGTT+TGG | 0.461146 | 2_2:+26136042 | None:intergenic |
| AATTTGCTTTGGTTTGAGCT+TGG | 0.466625 | 2_2:-26135477 | Msa0245980:three_prime_UTR |
| GATGGAAGATATGTTATCTC+TGG | 0.468775 | 2_2:+26135928 | None:intergenic |
| CACTTGATCTTGCACAAGAT+GGG | 0.471002 | 2_2:-26136549 | Msa0245980:CDS |
| AGCAACGCGCTTCTGTTGTC+CGG | 0.486636 | 2_2:-26135766 | Msa0245980:CDS |
| TCTTGGAAACTCTCCAAACA+TGG | 0.497227 | 2_2:-26135837 | Msa0245980:CDS |
| CCCTGACAACAATTATCAAA+AGG | 0.501288 | 2_2:-26135990 | Msa0245980:CDS |
| TCGGACAGGCAAATCATCCT+TGG | 0.503377 | 2_2:-26135732 | Msa0245980:three_prime_UTR |
| CGGTGATAGTTTCATCGGAC+AGG | 0.509040 | 2_2:-26135746 | Msa0245980:exon |
| TTTCCAAGAAACATGTGCTC+TGG | 0.515589 | 2_2:+26135851 | None:intergenic |
| AAGATCTAAAATTTAAGTAA+TGG | 0.520847 | 2_2:-26136983 | Msa0245980:five_prime_UTR |
| AGTAATGGCTGTGTTGTTGA+AGG | 0.525778 | 2_2:-26136968 | Msa0245980:five_prime_UTR |
| GGATGATTCAAAGAGAGAAA+AGG | 0.526180 | 2_2:+26136935 | None:intergenic |
| TTGTCCGGTGATAGTTTCAT+CGG | 0.526378 | 2_2:-26135751 | Msa0245980:exon |
| CATCCTTGGCTTAATCACTT+CGG | 0.544205 | 2_2:-26135718 | Msa0245980:three_prime_UTR |
| AAAGGAAGATCCTTCAGAGA+TGG | 0.545453 | 2_2:-26135972 | Msa0245980:CDS |
| CAAATGTTGCCTCAAATGAT+GGG | 0.557136 | 2_2:-26136598 | Msa0245980:CDS |
| AGTTGATCATAATCACTCAA+TGG | 0.558578 | 2_2:-26136888 | Msa0245980:intron |
| TGATGACTTTCCATCTCTGA+AGG | 0.561649 | 2_2:+26135962 | None:intergenic |
| CCGATCGGAACAACTTGTGA+TGG | 0.564255 | 2_2:+26135910 | None:intergenic |
| GATGCTAATCCCATCATTTG+AGG | 0.565976 | 2_2:+26136589 | None:intergenic |
| AAACACTTACAACAGCATGC+GGG | 0.571388 | 2_2:+26136724 | None:intergenic |
| ATCATTTGAGGCAACATTTG+GGG | 0.571616 | 2_2:+26136601 | None:intergenic |
| AAGTGGTAATGCAACTCTAG+TGG | 0.571902 | 2_2:+26136567 | None:intergenic |
| CTTGGAAACTCTCCAAACAT+GGG | 0.573579 | 2_2:-26135836 | Msa0245980:CDS |
| TCTAATGCAGAATTTGTCGC+TGG | 0.580969 | 2_2:-26136025 | Msa0245980:CDS |
| GGAGGAGCACCACAATGCAG+TGG | 0.581886 | 2_2:-26135812 | Msa0245980:CDS |
| AGTGGAGGACTCGCATTTGG+CGG | 0.584913 | 2_2:-26135794 | Msa0245980:CDS |
| CCATCTTGTGCAAGATCAAG+TGG | 0.592935 | 2_2:+26136550 | None:intergenic |
| CCATCACAAGTTGTTCCGAT+CGG | 0.593385 | 2_2:-26135910 | Msa0245980:CDS |
| TTGGAAACTCTCCAAACATG+GGG | 0.601862 | 2_2:-26135835 | Msa0245980:CDS |
| AATACCATGGTATACTGAGA+AGG | 0.610675 | 2_2:-26136504 | Msa0245980:CDS |
| AACACTTACAACAGCATGCG+GGG | 0.613676 | 2_2:+26136725 | None:intergenic |
| AACTTGTGAGCAATTGAACT+CGG | 0.618219 | 2_2:+26136907 | None:intergenic |
| GGAGCACCACAATGCAGTGG+AGG | 0.620324 | 2_2:-26135809 | Msa0245980:CDS |
| CTGTCCGATGAAACTATCAC+CGG | 0.624235 | 2_2:+26135747 | None:intergenic |
| AAAACACTTACAACAGCATG+CGG | 0.630340 | 2_2:+26136723 | None:intergenic |
| GTCAATGCAAAACAATACCA+TGG | 0.632585 | 2_2:-26136517 | Msa0245980:CDS |
| GGAAACTCTCCAAACATGGG+GGG | 0.636980 | 2_2:-26135833 | Msa0245980:CDS |
| TCATACTTGCCAGATCCCAA+AGG | 0.645047 | 2_2:-26138385 | Msa0245980:intron |
| AAACCGAAGTGATTAAGCCA+AGG | 0.645864 | 2_2:+26135715 | None:intergenic |
| AATAGAGTTAGAGGATCTGG+TGG | 0.657703 | 2_2:-26136079 | Msa0245980:CDS |
| GTCGCCTTCTCAGTATACCA+TGG | 0.679853 | 2_2:+26136500 | None:intergenic |
| GCGAGTCCTCCACTGCATTG+TGG | 0.686798 | 2_2:+26135803 | None:intergenic |
| TGGAAACTCTCCAAACATGG+GGG | 0.690180 | 2_2:-26135834 | Msa0245980:CDS |
| ACAATCACGAGCTAAGCTTG+AGG | 0.693616 | 2_2:-26136479 | Msa0245980:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CATAATAAAAAAAACAAAAA+AGG | + | chr2_2:26135591-26135610 | None:intergenic | 10.0% |
| !! | AATCATAAATAATCTATATT+TGG | - | chr2_2:26135958-26135977 | Msa0245980:CDS | 10.0% |
| !! | ATCATAAATAATCTATATTT+GGG | - | chr2_2:26135959-26135978 | Msa0245980:CDS | 10.0% |
| !! | AAAAAACAAAAAAGGAAAAA+AGG | + | chr2_2:26135583-26135602 | None:intergenic | 15.0% |
| !! | TCATAAATAATCTATATTTG+GGG | - | chr2_2:26135960-26135979 | Msa0245980:CDS | 15.0% |
| !! | TTTCTTAGAAAACATAAATT+AGG | + | chr2_2:26136359-26136378 | None:intergenic | 15.0% |
| !!! | GTTTAAAATGTTTTATTGTT+TGG | - | chr2_2:26136456-26136475 | Msa0245980:CDS | 15.0% |
| !! | AAACTGAAAAAAATTGATTA+AGG | - | chr2_2:26136595-26136614 | Msa0245980:CDS | 15.0% |
| !!! | AAGATCTAAAATTTAAGTAA+TGG | - | chr2_2:26136916-26136935 | Msa0245980:CDS | 15.0% |
| !!! | CATGATTTAAGGTTAAATTT+TGG | - | chr2_2:26135669-26135688 | Msa0245980:three_prime_UTR | 20.0% |
| !! | CATAAATAATCTATATTTGG+GGG | - | chr2_2:26135961-26135980 | Msa0245980:CDS | 20.0% |
| !!! | AGTTTCAATTTTTTAGTACT+TGG | - | chr2_2:26136007-26136026 | Msa0245980:CDS | 20.0% |
| !! | AATTCTCAAAATCTTACAAA+GGG | + | chr2_2:26136170-26136189 | None:intergenic | 20.0% |
| !! | ATGAATTAGTGTGAATATTA+TGG | - | chr2_2:26136281-26136300 | Msa0245980:intron | 20.0% |
| !!! | TTTTTTTCAGTTTACTAACA+AGG | + | chr2_2:26136588-26136607 | None:intergenic | 20.0% |
| !! | AGTAAACTATTCAATAAAAC+AGG | + | chr2_2:26137744-26137763 | None:intergenic | 20.0% |
| !! | TACATGTGAAAGTAATAAAA+AGG | + | chr2_2:26138315-26138334 | None:intergenic | 20.0% |
| !!! | CTTTCACATGTATTTTAAAT+TGG | - | chr2_2:26138323-26138342 | Msa0245980:intron | 20.0% |
| !!! | GATCAATATATAATTTGCTT+TGG | - | chr2_2:26138411-26138430 | Msa0245980:five_prime_UTR | 20.0% |
| !! | TCTTCTTTTAGCATGATTTA+AGG | - | chr2_2:26135658-26135677 | Msa0245980:three_prime_UTR | 25.0% |
| !!! | TTGTCTGTTTTGTTTTTTTG+AGG | - | chr2_2:26135750-26135769 | Msa0245980:exon | 25.0% |
| ! | TAGTTCATTCATACTAGAAT+TGG | + | chr2_2:26135794-26135813 | None:intergenic | 25.0% |
| ! | TCCTAGCATATTTGATTATT+TGG | - | chr2_2:26135849-26135868 | Msa0245980:CDS | 25.0% |
| ! | AATATTGAACTCAAGTTTCA+AGG | - | chr2_2:26136050-26136069 | Msa0245980:CDS | 25.0% |
| !!! | GTTTGATGATCCATTTTATA+TGG | - | chr2_2:26136084-26136103 | Msa0245980:CDS | 25.0% |
| ! | CAATTCTCAAAATCTTACAA+AGG | + | chr2_2:26136171-26136190 | None:intergenic | 25.0% |
| !!! | TGTAAGATTTTGAGAATTGT+TGG | - | chr2_2:26136172-26136191 | Msa0245980:intron | 25.0% |
| ! | TTCAACAATGTATGTGAAAT+TGG | - | chr2_2:26136257-26136276 | Msa0245980:intron | 25.0% |
| ! | GTATAGATATGTTCGTAATT+TGG | - | chr2_2:26136664-26136683 | Msa0245980:intron | 25.0% |
| !! | CACAAAATATGTGTTTCTAA+AGG | + | chr2_2:26136770-26136789 | None:intergenic | 25.0% |
| !! | AAGTAATGTAAAAGCATAAG+AGG | + | chr2_2:26136833-26136852 | None:intergenic | 25.0% |
| ! | TTCTATGTTTGTGATATTCT+TGG | - | chr2_2:26136855-26136874 | Msa0245980:intron | 25.0% |
| ! | TTATACAAAATCATTCTCTC+AGG | - | chr2_2:26136891-26136910 | Msa0245980:CDS | 25.0% |
| !!! | TGTTTTGCATTGACATAAAT+GGG | + | chr2_2:26137376-26137395 | None:intergenic | 25.0% |
| !!! | TTGTTTTGCATTGACATAAA+TGG | + | chr2_2:26137377-26137396 | None:intergenic | 25.0% |
| ! | AAAAAGTAAAGTTCAAAGCA+TGG | + | chr2_2:26137482-26137501 | None:intergenic | 25.0% |
| !!! | GAACTTTACTTTTTTCATTC+AGG | - | chr2_2:26137488-26137507 | Msa0245980:intron | 25.0% |
| !! | CTACTAGTTTATATGCTATA+AGG | + | chr2_2:26137515-26137534 | None:intergenic | 25.0% |
| !! | TGATTTTATATAACCATCCA+AGG | - | chr2_2:26137607-26137626 | Msa0245980:intron | 25.0% |
| !! | GATTTTATATAACCATCCAA+GGG | - | chr2_2:26137608-26137627 | Msa0245980:intron | 25.0% |
| ! | AATTTCACCATGTAATAACA+TGG | + | chr2_2:26137698-26137717 | None:intergenic | 25.0% |
| !!! | TGGTGAAATTGTTATTTGAA+AGG | - | chr2_2:26137708-26137727 | Msa0245980:intron | 25.0% |
| !!! | GGTGAAATTGTTATTTGAAA+GGG | - | chr2_2:26137709-26137728 | Msa0245980:intron | 25.0% |
| AAAAAGGAAAAAAGGCAAAG+AGG | + | chr2_2:26135575-26135594 | None:intergenic | 30.0% | |
| TTGTTAGTTGAGATTTGGAA+AGG | - | chr2_2:26135721-26135740 | Msa0245980:three_prime_UTR | 30.0% | |
| GCCAAATAATCAAATATGCT+AGG | + | chr2_2:26135853-26135872 | None:intergenic | 30.0% | |
| TAAGATCAATGAGAAGTGAA+AGG | - | chr2_2:26135933-26135952 | Msa0245980:CDS | 30.0% | |
| ! | GATGATCCATTTTATATGGT+TGG | - | chr2_2:26136088-26136107 | Msa0245980:CDS | 30.0% |
| ! | TATGGATTGAGTACAAACTA+AGG | + | chr2_2:26136116-26136135 | None:intergenic | 30.0% |
| GTGTGAATATTATGGAGTTA+AGG | - | chr2_2:26136289-26136308 | Msa0245980:intron | 30.0% | |
| AGAAAACATAAATTAGGCCA+TGG | + | chr2_2:26136353-26136372 | None:intergenic | 30.0% | |
| AATACTTGAGAAGTAGTGAT+TGG | + | chr2_2:26136527-26136546 | None:intergenic | 30.0% | |
| !!! | GTTCGTAATTTGGTGTTTTA+TGG | - | chr2_2:26136674-26136693 | Msa0245980:intron | 30.0% |
| !!! | ACAAAAGCTTTTTCGCATTT+AGG | + | chr2_2:26136727-26136746 | None:intergenic | 30.0% |
| AGTTGATCATAATCACTCAA+TGG | - | chr2_2:26137011-26137030 | Msa0245980:intron | 30.0% | |
| GTATGTGAAACTTCTGTATT+TGG | - | chr2_2:26137033-26137052 | Msa0245980:intron | 30.0% | |
| AACTACTTCGTTACTAAAAG+TGG | + | chr2_2:26137072-26137091 | None:intergenic | 30.0% | |
| GCAAAAATTGGATCACTATA+AGG | + | chr2_2:26137134-26137153 | None:intergenic | 30.0% | |
| ! | TATAGTGATCCAATTTTTGC+TGG | - | chr2_2:26137134-26137153 | Msa0245980:intron | 30.0% |
| !! | TATTAGCACTTTTTGATGCT+TGG | - | chr2_2:26137231-26137250 | Msa0245980:intron | 30.0% |
| TTTCTCGTTACAATCTCAAA+AGG | + | chr2_2:26137583-26137602 | None:intergenic | 30.0% | |
| CAAAATGCCATGTTATTACA+TGG | - | chr2_2:26137688-26137707 | Msa0245980:intron | 30.0% | |
| !! | CCTTTTGATAATTGTTGTCA+GGG | + | chr2_2:26137912-26137931 | None:intergenic | 30.0% |
| !! | TCCTTTTGATAATTGTTGTC+AGG | + | chr2_2:26137913-26137932 | None:intergenic | 30.0% |
| !!! | TATGTTATCTCTGGTTTTTG+AGG | + | chr2_2:26137965-26137984 | None:intergenic | 30.0% |
| ! | TATTGCTTACACTTGTCTTT+TGG | - | chr2_2:26138346-26138365 | Msa0245980:intron | 30.0% |
| !!! | GTTTCTGCATGAAACTTTTT+TGG | - | chr2_2:26138383-26138402 | Msa0245980:intron | 30.0% |
| !! | ACTTGTTGTTGGGTTGAAAT+TGG | + | chr2_2:26135459-26135478 | None:intergenic | 35.0% |
| !! | GAAGTGTTGTACTTGTTGTT+GGG | + | chr2_2:26135469-26135488 | None:intergenic | 35.0% |
| !! | AGAAGTGTTGTACTTGTTGT+TGG | + | chr2_2:26135470-26135489 | None:intergenic | 35.0% |
| ! | TGGTGTTTTTCATTTGCATG+TGG | - | chr2_2:26135689-26135708 | Msa0245980:three_prime_UTR | 35.0% |
| TGAGGTTGTTAGTTGAGATT+TGG | - | chr2_2:26135716-26135735 | Msa0245980:three_prime_UTR | 35.0% | |
| GCTAGGATAGAAAAGAAAGA+AGG | + | chr2_2:26135836-26135855 | None:intergenic | 35.0% | |
| ! | AAGGCACCAACCATATAAAA+TGG | + | chr2_2:26136097-26136116 | None:intergenic | 35.0% |
| TCACTACTTCTCAAGTATTC+AGG | - | chr2_2:26136528-26136547 | Msa0245980:CDS | 35.0% | |
| AGGAAATAGACAAAGAGTGA+AGG | + | chr2_2:26136624-26136643 | None:intergenic | 35.0% | |
| TCAAATCAGCTAGTCACTTA+AGG | + | chr2_2:26136644-26136663 | None:intergenic | 35.0% | |
| ! | GTGTTTCTAAAGGATGTGAA+GGG | + | chr2_2:26136760-26136779 | None:intergenic | 35.0% |
| ! | TGTGTTTCTAAAGGATGTGA+AGG | + | chr2_2:26136761-26136780 | None:intergenic | 35.0% |
| GGATGATTCAAAGAGAGAAA+AGG | + | chr2_2:26136967-26136986 | None:intergenic | 35.0% | |
| AACTTGTGAGCAATTGAACT+CGG | + | chr2_2:26136995-26137014 | None:intergenic | 35.0% | |
| ACTAACGAACCAGCAAAAAT+TGG | + | chr2_2:26137146-26137165 | None:intergenic | 35.0% | |
| AAAACACTTACAACAGCATG+CGG | + | chr2_2:26137179-26137198 | None:intergenic | 35.0% | |
| ! | ATCATTTGAGGCAACATTTG+GGG | + | chr2_2:26137301-26137320 | None:intergenic | 35.0% |
| ! | CATCATTTGAGGCAACATTT+GGG | + | chr2_2:26137302-26137321 | None:intergenic | 35.0% |
| CAAATGTTGCCTCAAATGAT+GGG | - | chr2_2:26137301-26137320 | Msa0245980:intron | 35.0% | |
| GTCAATGCAAAACAATACCA+TGG | - | chr2_2:26137382-26137401 | Msa0245980:intron | 35.0% | |
| AATACCATGGTATACTGAGA+AGG | - | chr2_2:26137395-26137414 | Msa0245980:intron | 35.0% | |
| ! | ATCTCAAAAGGTAAGAGTGT+AGG | + | chr2_2:26137571-26137590 | None:intergenic | 35.0% |
| AATTCTACCACTTGTCATCA+CGG | + | chr2_2:26137649-26137668 | None:intergenic | 35.0% | |
| CTCTATTCAAAGCATGTTTG+TGG | + | chr2_2:26137807-26137826 | None:intergenic | 35.0% | |
| ! | CATGCTTTGAATAGAGTTAG+AGG | - | chr2_2:26137811-26137830 | Msa0245980:intron | 35.0% |
| TTGAATAGAGTTAGAGGATC+TGG | - | chr2_2:26137817-26137836 | Msa0245980:intron | 35.0% | |
| ! | ATTAGACTCTGAAAGCTGTT+TGG | + | chr2_2:26137860-26137879 | None:intergenic | 35.0% |
| CCCTGACAACAATTATCAAA+AGG | - | chr2_2:26137909-26137928 | Msa0245980:intron | 35.0% | |
| GATGGAAGATATGTTATCTC+TGG | + | chr2_2:26137974-26137993 | None:intergenic | 35.0% | |
| !! | TCGGTGTTTTCATGGTAATT+TGG | - | chr2_2:26138206-26138225 | Msa0245980:intron | 35.0% |
| !! | AATTTGCTTTGGTTTGAGCT+TGG | - | chr2_2:26138422-26138441 | Msa0245980:five_prime_UTR | 35.0% |
| !! | GAAAGAGAGAGAGTACCTTT+GGG | + | chr2_2:26135532-26135551 | None:intergenic | 40.0% |
| !! | AGAAAGAGAGAGAGTACCTT+TGG | + | chr2_2:26135533-26135552 | None:intergenic | 40.0% |
| AAAAAGGCAAAGAGGCAAAG+AGG | + | chr2_2:26135567-26135586 | None:intergenic | 40.0% | |
| TCATTTGCATGTGGAGTTTG+AGG | - | chr2_2:26135698-26135717 | Msa0245980:three_prime_UTR | 40.0% | |
| AGTCAGCTGACATCTTCATA+TGG | + | chr2_2:26136134-26136153 | None:intergenic | 40.0% | |
| ! | TCTAATCGAGTTGTTCTCCA+TGG | - | chr2_2:26136333-26136352 | Msa0245980:intron | 40.0% |
| CTACTTCTCAAGTATTCAGG+CGG | - | chr2_2:26136531-26136550 | Msa0245980:CDS | 40.0% | |
| TACTTCTCAAGTATTCAGGC+GGG | - | chr2_2:26136532-26136551 | Msa0245980:CDS | 40.0% | |
| ! | TTTCTAAAGGATGTGAAGGG+AGG | + | chr2_2:26136757-26136776 | None:intergenic | 40.0% |
| ! | AGTAATGGCTGTGTTGTTGA+AGG | - | chr2_2:26136931-26136950 | Msa0245980:CDS | 40.0% |
| ! | AGTTATTGTCGTCCGTTTTC+AGG | - | chr2_2:26137088-26137107 | Msa0245980:intron | 40.0% |
| AAACACTTACAACAGCATGC+GGG | + | chr2_2:26137178-26137197 | None:intergenic | 40.0% | |
| ! | CCATCATTTGAGGCAACATT+TGG | + | chr2_2:26137303-26137322 | None:intergenic | 40.0% |
| CCAAATGTTGCCTCAAATGA+TGG | - | chr2_2:26137300-26137319 | Msa0245980:intron | 40.0% | |
| GATGCTAATCCCATCATTTG+AGG | + | chr2_2:26137313-26137332 | None:intergenic | 40.0% | |
| ! | AAGTGGTAATGCAACTCTAG+TGG | + | chr2_2:26137335-26137354 | None:intergenic | 40.0% |
| CACTTGATCTTGCACAAGAT+GGG | - | chr2_2:26137350-26137369 | Msa0245980:intron | 40.0% | |
| ! | GTAGCAAAGTTTTTCATGCG+TGG | - | chr2_2:26137531-26137550 | Msa0245980:intron | 40.0% |
| ATTCTACCACTTGTCATCAC+GGG | + | chr2_2:26137648-26137667 | None:intergenic | 40.0% | |
| AATAGAGTTAGAGGATCTGG+TGG | - | chr2_2:26137820-26137839 | Msa0245980:intron | 40.0% | |
| !! | GCTGTTTGGTGCTTAGAAAT+CGG | + | chr2_2:26137846-26137865 | None:intergenic | 40.0% |
| TCTAATGCAGAATTTGTCGC+TGG | - | chr2_2:26137874-26137893 | Msa0245980:intron | 40.0% | |
| AAAGGAAGATCCTTCAGAGA+TGG | - | chr2_2:26137927-26137946 | Msa0245980:intron | 40.0% | |
| TGATGACTTTCCATCTCTGA+AGG | + | chr2_2:26137940-26137959 | None:intergenic | 40.0% | |
| CCTAAAACTGAAACTGTTGC+TGG | + | chr2_2:26138025-26138044 | None:intergenic | 40.0% | |
| ! | CCAGCAACAGTTTCAGTTTT+AGG | - | chr2_2:26138022-26138041 | Msa0245980:intron | 40.0% |
| TTTCCAAGAAACATGTGCTC+TGG | + | chr2_2:26138051-26138070 | None:intergenic | 40.0% | |
| TCTTGGAAACTCTCCAAACA+TGG | - | chr2_2:26138062-26138081 | Msa0245980:intron | 40.0% | |
| CTTGGAAACTCTCCAAACAT+GGG | - | chr2_2:26138063-26138082 | Msa0245980:intron | 40.0% | |
| TTGGAAACTCTCCAAACATG+GGG | - | chr2_2:26138064-26138083 | Msa0245980:intron | 40.0% | |
| TTGTCCGGTGATAGTTTCAT+CGG | - | chr2_2:26138148-26138167 | Msa0245980:intron | 40.0% | |
| CATCCTTGGCTTAATCACTT+CGG | - | chr2_2:26138181-26138200 | Msa0245980:intron | 40.0% | |
| AAACCGAAGTGATTAAGCCA+AGG | + | chr2_2:26138187-26138206 | None:intergenic | 40.0% | |
| TGGCTTAATCACTTCGGTTT+CGG | - | chr2_2:26138187-26138206 | Msa0245980:intron | 40.0% | |
| ! | CTTACACTTGTCTTTTGGAC+TGG | - | chr2_2:26138351-26138370 | Msa0245980:intron | 40.0% |
| !! | ACTTGTCTTTTGGACTGGAT+TGG | - | chr2_2:26138356-26138375 | Msa0245980:intron | 40.0% |
| TCATACTTGCCAGATCCCAA+AGG | - | chr2_2:26135514-26135533 | Msa0245980:three_prime_UTR | 45.0% | |
| AAGCATAAGAGGAACACGAC+AGG | + | chr2_2:26136822-26136841 | None:intergenic | 45.0% | |
| GAGCAATTGAACTCGGTATC+AGG | + | chr2_2:26136988-26137007 | None:intergenic | 45.0% | |
| CATGAGTCTGAGCCTGAAAA+CGG | + | chr2_2:26137103-26137122 | None:intergenic | 45.0% | |
| AACACTTACAACAGCATGCG+GGG | + | chr2_2:26137177-26137196 | None:intergenic | 45.0% | |
| CCATCTTGTGCAAGATCAAG+TGG | + | chr2_2:26137352-26137371 | None:intergenic | 45.0% | |
| CCACTTGATCTTGCACAAGA+TGG | - | chr2_2:26137349-26137368 | Msa0245980:intron | 45.0% | |
| ACAATCACGAGCTAAGCTTG+AGG | - | chr2_2:26137420-26137439 | Msa0245980:intron | 45.0% | |
| TAACCATCCAAGGGTGAACA+AGG | - | chr2_2:26137617-26137636 | Msa0245980:intron | 45.0% | |
| TGGCGAGATTCGTGAAGATA+TGG | + | chr2_2:26137787-26137806 | None:intergenic | 45.0% | |
| !! | TTTGTCGCTGGTTCACATTC+TGG | - | chr2_2:26137886-26137905 | Msa0245980:intron | 45.0% |
| CCATCACAAGTTGTTCCGAT+CGG | - | chr2_2:26137989-26138008 | Msa0245980:intron | 45.0% | |
| GCTGGAAAAACATGTCCGAT+CGG | + | chr2_2:26138007-26138026 | None:intergenic | 45.0% | |
| TGGAAACTCTCCAAACATGG+GGG | - | chr2_2:26138065-26138084 | Msa0245980:intron | 45.0% | |
| CTGTCCGATGAAACTATCAC+CGG | + | chr2_2:26138155-26138174 | None:intergenic | 45.0% | |
| !!! | CTTCGGTTTCGGTGTTTTCA+TGG | - | chr2_2:26138198-26138217 | Msa0245980:intron | 45.0% |
| !! | GAGAGAGTACCTTTGGGATC+TGG | + | chr2_2:26135526-26135545 | None:intergenic | 50.0% |
| GTCGCCTTCTCAGTATACCA+TGG | + | chr2_2:26137402-26137421 | None:intergenic | 50.0% | |
| GAACCTTGTTCACCCTTGGA+TGG | + | chr2_2:26137623-26137642 | None:intergenic | 50.0% | |
| CCGATCGGAACAACTTGTGA+TGG | + | chr2_2:26137992-26138011 | None:intergenic | 50.0% | |
| CAGCCAGAGCACATGTTTCT+TGG | - | chr2_2:26138045-26138064 | Msa0245980:intron | 50.0% | |
| GGAAACTCTCCAAACATGGG+GGG | - | chr2_2:26138066-26138085 | Msa0245980:intron | 50.0% | |
| CGGTGATAGTTTCATCGGAC+AGG | - | chr2_2:26138153-26138172 | Msa0245980:intron | 50.0% | |
| TCGGACAGGCAAATCATCCT+TGG | - | chr2_2:26138167-26138186 | Msa0245980:intron | 50.0% | |
| GGAGGAACCTTGTTCACCCT+TGG | + | chr2_2:26137627-26137646 | None:intergenic | 55.0% | |
| GTTCCTCCCGTGATGACAAG+TGG | - | chr2_2:26137639-26137658 | Msa0245980:intron | 55.0% | |
| CTACCACTTGTCATCACGGG+AGG | + | chr2_2:26137645-26137664 | None:intergenic | 55.0% | |
| AACTCTCCAAACATGGGGGG+AGG | - | chr2_2:26138069-26138088 | Msa0245980:intron | 55.0% | |
| TGCAGTGGAGGACTCGCATT+TGG | - | chr2_2:26138102-26138121 | Msa0245980:intron | 55.0% | |
| AGTGGAGGACTCGCATTTGG+CGG | - | chr2_2:26138105-26138124 | Msa0245980:intron | 55.0% | |
| AGCAACGCGCTTCTGTTGTC+CGG | - | chr2_2:26138133-26138152 | Msa0245980:intron | 55.0% | |
| !! | GGAGGAGCACCACAATGCAG+TGG | - | chr2_2:26138087-26138106 | Msa0245980:intron | 60.0% |
| ! | GGAGCACCACAATGCAGTGG+AGG | - | chr2_2:26138090-26138109 | Msa0245980:intron | 60.0% |
| GCGAGTCCTCCACTGCATTG+TGG | + | chr2_2:26138099-26138118 | None:intergenic | 60.0% | |
| GGTGCTCCTCCCCCCATGTT+TGG | + | chr2_2:26138078-26138097 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_2 | gene | 26135456 | 26138465 | 26135456 | ID=Msa0245980;Name=Msa0245980 |
| chr2_2 | mRNA | 26135456 | 26138465 | 26135456 | ID=Msa0245980-mRNA-1;Parent=Msa0245980;Name=Msa0245980-mRNA-1;_AED=0.10;_eAED=0.10;_QI=125|1|1|1|0.75|0.8|5|307|235 |
| chr2_2 | exon | 26135456 | 26136137 | 26135456 | ID=Msa0245980-mRNA-1:exon:9745;Parent=Msa0245980-mRNA-1 |
| chr2_2 | exon | 26136450 | 26136629 | 26136450 | ID=Msa0245980-mRNA-1:exon:9744;Parent=Msa0245980-mRNA-1 |
| chr2_2 | exon | 26136734 | 26136811 | 26136734 | ID=Msa0245980-mRNA-1:exon:9743;Parent=Msa0245980-mRNA-1 |
| chr2_2 | exon | 26136889 | 26137008 | 26136889 | ID=Msa0245980-mRNA-1:exon:9742;Parent=Msa0245980-mRNA-1 |
| chr2_2 | exon | 26138386 | 26138465 | 26138386 | ID=Msa0245980-mRNA-1:exon:9741;Parent=Msa0245980-mRNA-1 |
| chr2_2 | five_prime_UTR | 26138386 | 26138465 | 26138386 | ID=Msa0245980-mRNA-1:five_prime_utr;Parent=Msa0245980-mRNA-1 |
| chr2_2 | five_prime_UTR | 26136964 | 26137008 | 26136964 | ID=Msa0245980-mRNA-1:five_prime_utr;Parent=Msa0245980-mRNA-1 |
| chr2_2 | CDS | 26136889 | 26136963 | 26136889 | ID=Msa0245980-mRNA-1:cds;Parent=Msa0245980-mRNA-1 |
| chr2_2 | CDS | 26136734 | 26136811 | 26136734 | ID=Msa0245980-mRNA-1:cds;Parent=Msa0245980-mRNA-1 |
| chr2_2 | CDS | 26136450 | 26136629 | 26136450 | ID=Msa0245980-mRNA-1:cds;Parent=Msa0245980-mRNA-1 |
| chr2_2 | CDS | 26135763 | 26136137 | 26135763 | ID=Msa0245980-mRNA-1:cds;Parent=Msa0245980-mRNA-1 |
| chr2_2 | three_prime_UTR | 26135456 | 26135762 | 26135456 | ID=Msa0245980-mRNA-1:three_prime_utr;Parent=Msa0245980-mRNA-1 |
| Gene Sequence |
| Protein sequence |
