AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0435230


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0435230 MtrunA17_Chr3g0142161 88.904 721 18 3 1 674 1 706 0.0 1295
Msa0435230 MtrunA17_Chr4g0035561 68.154 807 210 2 1 761 14 819 0.0 1129
Msa0435230 MtrunA17_Chr2g0325991 58.519 810 284 5 1 761 11 817 0.0 971
Msa0435230 MtrunA17_Chr4g0030121 58.025 810 290 4 1 761 11 819 0.0 958
Msa0435230 MtrunA17_Chr3g0142151 96.629 89 3 0 675 763 3 91 2.26e-52 176
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0435230 AT2G21410.1 67.286 807 217 2 1 761 15 820 0.0 1119
Msa0435230 AT4G39080.1 67.574 808 214 3 1 761 14 820 0.0 1117
Msa0435230 AT2G28520.1 57.143 805 295 3 1 755 11 815 0.0 947

Find 138 sgRNAs with CRISPR-Local

Find 303 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAGCTTCCTATCTTCGTTTA+TGG 0.080046 3_2:-88364906 Msa0435230:CDS
TCCATTCCGTTTGAACTATT+TGG 0.108443 3_2:-88365937 Msa0435230:CDS
GCGTAAGTTGCATTTATTTA+AGG 0.166798 3_2:-88368605 Msa0435230:CDS
TTCTATTGATCTAGAAAATT+TGG 0.182048 3_2:-88368530 Msa0435230:CDS
GTATTCTTGAACAGCCTATT+TGG 0.197201 3_2:-88365491 Msa0435230:CDS
TCCAGTAAAGCAGATAAAAT+TGG 0.203541 3_2:-88368002 Msa0435230:CDS
CACTCCTCATAATTGTAAAA+TGG 0.223248 3_2:-88365460 Msa0435230:CDS
TTAAGGGATGTAAATGAAAA+TGG 0.233682 3_2:+88363969 None:intergenic
CGCTGTAATGTTTGGTGATT+GGG 0.234878 3_2:-88366219 Msa0435230:CDS
GGCTGTTCAAGAATACAATT+TGG 0.237322 3_2:+88365498 None:intergenic
TATTGACTGTCCATTATTAA+TGG 0.242494 3_2:-88368129 Msa0435230:CDS
TGCAACTGTTGGTGTCTTAC+TGG 0.245600 3_2:-88364087 Msa0435230:CDS
CATATTTAGAATGTGATAAA+TGG 0.248964 3_2:+88367110 None:intergenic
TCATGGCATATGCTTATTAT+TGG 0.252181 3_2:-88366195 Msa0435230:CDS
AATGAAGATGTCAATTCTAT+TGG 0.256189 3_2:-88365695 Msa0435230:CDS
TTCTTACTTGAAAGAACTTT+TGG 0.258014 3_2:+88365345 None:intergenic
AACATTGATGCGAGCAACTA+TGG 0.268246 3_2:-88366920 Msa0435230:CDS
ATTTAAGGAGCAAATGAAAA+AGG 0.270582 3_2:-88368590 Msa0435230:CDS
TCTAAGTCCAACAGATGATT+TGG 0.275930 3_2:-88365390 Msa0435230:CDS
ATACATCTTTGAACTGAAAA+AGG 0.292712 3_2:+88369060 None:intergenic
TATACTTGTTCCATTAATAA+TGG 0.306170 3_2:+88368119 None:intergenic
AGCAATTTGTTGCAAACAAT+TGG 0.307815 3_2:-88367335 Msa0435230:CDS
TTATAACCGGTCTTGTTACT+AGG 0.312976 3_2:-88367976 Msa0435230:CDS
ATACAATTTGGGGAACAAAT+TGG 0.314145 3_2:+88365510 None:intergenic
CTCCGTGTGCCATGCCATTT+AGG 0.315514 3_2:+88365745 None:intergenic
AGCTTCCTATCTTCGTTTAT+GGG 0.320291 3_2:-88364905 Msa0435230:CDS
CAAGAAATTGTAGACGCATA+TGG 0.321767 3_2:-88366802 Msa0435230:CDS
CCAGTAAAGCAGATAAAATT+GGG 0.329792 3_2:-88368001 Msa0435230:CDS
CATTTGGCGTAGATCCTAAA+TGG 0.329997 3_2:-88365759 Msa0435230:CDS
CTTTAATTCTACAATTCTTT+CGG 0.330426 3_2:+88367388 None:intergenic
ACACACCAGGATTTGCTTCC+TGG 0.331410 3_2:+88366270 None:intergenic
TCGCTGTAATGTTTGGTGAT+TGG 0.333056 3_2:-88366220 Msa0435230:CDS
CTCCCTCGTAAAACTTGTTC+TGG 0.335494 3_2:+88364009 None:intergenic
ACAGTCCATCCTCGTCATTA+AGG 0.336141 3_2:+88363952 None:intergenic
ATTTGAGCAGTGGAATCTTC+TGG 0.337268 3_2:-88367306 Msa0435230:intron
ATATGATTCCAAGATTCATT+TGG 0.339853 3_2:+88365665 None:intergenic
GTTGAACTTCAAGCTCTCTT+TGG 0.343889 3_2:+88368168 None:intergenic
AACACCATTGTTCTCATTGT+TGG 0.347282 3_2:-88364128 Msa0435230:CDS
GCTGTTCAAGAATACAATTT+GGG 0.359364 3_2:+88365499 None:intergenic
AGGATTTGCTTCCTGGTACT+TGG 0.373271 3_2:+88366277 None:intergenic
TATGATTCCAAGATTCATTT+GGG 0.373807 3_2:+88365666 None:intergenic
TTCAGGGATGCTACTACAAT+AGG 0.384365 3_2:-88365808 Msa0435230:intron
ATCTCTTACCTTGGCGATCT+AGG 0.395353 3_2:-88369083 Msa0435230:CDS
ATAAAATTGGGGTTTATAAC+CGG 0.396630 3_2:-88367989 Msa0435230:CDS
CTAAGTCCAACAGATGATTT+GGG 0.404472 3_2:-88365389 Msa0435230:CDS
TCTCTCGTTGACCATGTTGA+TGG 0.411005 3_2:+88368556 None:intergenic
TGCATGCTTTGAGACTTCAT+TGG 0.411142 3_2:-88364040 Msa0435230:CDS
ATCAAATAGGTTAAAAGATG+TGG 0.412168 3_2:-88368637 Msa0435230:intron
GGTGAAAACCAGCTCTTTGT+TGG 0.412927 3_2:-88365368 Msa0435230:CDS
ATGAAGATGTCAATTCTATT+GGG 0.414653 3_2:-88365694 Msa0435230:CDS
TTAGGTTATATTACTATTGT+TGG 0.418965 3_2:-88365242 Msa0435230:intron
GCATGCTTTGAGACTTCATT+GGG 0.419031 3_2:-88364039 Msa0435230:CDS
AGATCCTTTGTCAGGAGAAA+AGG 0.420075 3_2:-88367864 Msa0435230:intron
GGAGTGAAAGATAGCCAAAT+AGG 0.420903 3_2:+88365477 None:intergenic
GAATTCTATTTCGTGCTACT+AGG 0.420984 3_2:-88367931 Msa0435230:CDS
AAGAAATTGTAGACGCATAT+GGG 0.426376 3_2:-88366801 Msa0435230:intron
ATTCTATTGTATGTATAAGT+TGG 0.428985 3_2:+88364953 None:intergenic
CAGTCCATCCTCGTCATTAA+GGG 0.429761 3_2:+88363953 None:intergenic
ACTTGGAGACATATTAGAAA+TGG 0.433033 3_2:-88366037 Msa0435230:CDS
ATTGATCATTCCAATTGAAT+CGG 0.434902 3_2:-88369117 Msa0435230:CDS
GGAGTATCCCAAATGAATCT+TGG 0.435333 3_2:-88365673 Msa0435230:CDS
GATCGATGAGCCGATTCAAT+TGG 0.436497 3_2:+88369107 None:intergenic
ATGTTGTTTCTTCAAGAGAA+AGG 0.437840 3_2:+88365183 None:intergenic
TAAGGGATGTAAATGAAAAT+GGG 0.437892 3_2:+88363970 None:intergenic
GTGCGCGACACTTATCCATT+TGG 0.445671 3_2:-88365775 Msa0435230:CDS
AATTCTATTTCGTGCTACTA+GGG 0.446400 3_2:-88367930 Msa0435230:CDS
TCAAATAGGTTAAAAGATGT+GGG 0.447595 3_2:-88368636 Msa0435230:intron
CCTACTCTTTGATCTACAAT+GGG 0.450668 3_2:-88365053 Msa0435230:CDS
GAAGTTCAACCAACTGTTGA+AGG 0.450852 3_2:-88368155 Msa0435230:CDS
TGTTGGTGTCTTACTGGTAA+TGG 0.451038 3_2:-88364081 Msa0435230:CDS
CATGTTCTAGATCCTTTGTC+AGG 0.453259 3_2:-88367872 Msa0435230:CDS
TTCTTCAAGAGAAAGGGCTT+TGG 0.461252 3_2:+88365190 None:intergenic
GAGGGCCCATAAACGAAGAT+AGG 0.461762 3_2:+88364900 None:intergenic
TTAAAGACAACCATTGATGT+AGG 0.463823 3_2:-88367371 Msa0435230:CDS
TGTTGTTAATTGCAGAAACT+TGG 0.465763 3_2:-88366054 Msa0435230:intron
ATCTTCGTTTATGGGCCCTC+AGG 0.469823 3_2:-88364897 Msa0435230:intron
GGATGCTACTACAATAGGTT+TGG 0.469912 3_2:-88365803 Msa0435230:CDS
TTGAAAACAACATAAACATA+TGG 0.470037 3_2:-88365618 Msa0435230:intron
ATGTTTGGTGATTGGGGTCA+TGG 0.475527 3_2:-88366212 Msa0435230:CDS
CATTTAGGATCTACGCCAAA+TGG 0.477514 3_2:+88365760 None:intergenic
CGCTGAAATCAAACTCCTCA+TGG 0.478028 3_2:+88364989 None:intergenic
CACCAAACATTACAGCGAAA+AGG 0.483279 3_2:+88366225 None:intergenic
TGTTGTTTCTTCAAGAGAAA+GGG 0.483549 3_2:+88365184 None:intergenic
CATCGATCCATCTCTTACCT+TGG 0.485763 3_2:-88369092 Msa0435230:CDS
CTATTTGGACAATCTGCCTA+TGG 0.489161 3_2:-88365922 Msa0435230:CDS
GAAGCATAGGTCTGTTGGAA+TGG 0.489379 3_2:+88368866 None:intergenic
TCCAAATAGTTCAAACGGAA+TGG 0.495363 3_2:+88365936 None:intergenic
AATGTCTCCTTGCAGAAGGC+TGG 0.495741 3_2:-88367065 Msa0435230:CDS
TGAATTAATCTCAATTAGCT+CGG 0.496624 3_2:+88368396 None:intergenic
GATTGTCCAAATAGTTCAAA+CGG 0.500166 3_2:+88365931 None:intergenic
CCTGTGAAGCATAGGTCTGT+TGG 0.509382 3_2:+88368861 None:intergenic
GAGATATATTATTATGATGA+TGG 0.510661 3_2:-88366004 Msa0435230:CDS
TATTGATCTAGAAAATTTGG+AGG 0.515471 3_2:-88368527 Msa0435230:intron
TATAACCGGTCTTGTTACTA+GGG 0.516391 3_2:-88367975 Msa0435230:CDS
TGTAGGATCGCGACATCCAT+AGG 0.523119 3_2:+88365906 None:intergenic
AAGTACCAGGAAGCAAATCC+TGG 0.525177 3_2:-88366275 Msa0435230:CDS
TCCTACTCTTTGATCTACAA+TGG 0.526141 3_2:-88365054 Msa0435230:CDS
TCAATAGACCCTTCAACAGT+TGG 0.528917 3_2:+88368146 None:intergenic
ATGAAGCAAACCTACATCAA+TGG 0.531103 3_2:+88367361 None:intergenic
CCAACAGACCTATGCTTCAC+AGG 0.533446 3_2:-88368861 Msa0435230:intron
ATAATTGTAAAATGGTGCAC+TGG 0.535769 3_2:-88365452 Msa0435230:CDS
CGAAATAGAATTCTTTCGAA+AGG 0.537677 3_2:+88367941 None:intergenic
CATACAATAGAATTTGTGCT+TGG 0.540924 3_2:-88364943 Msa0435230:CDS
AAGCATAGGTCTGTTGGAAT+GGG 0.545226 3_2:+88368867 None:intergenic
AAGTTCAACCAACTGTTGAA+GGG 0.552644 3_2:-88368154 Msa0435230:CDS
TGACAGAATTGCCAAGTACC+AGG 0.558993 3_2:-88366288 Msa0435230:intron
TTGGATATCAATTTGAGCAG+TGG 0.566788 3_2:-88367316 Msa0435230:CDS
TGGCACTCATTTCAGTACCA+TGG 0.568747 3_2:-88365222 Msa0435230:CDS
TATAGGTACCTGTGAAGCAT+AGG 0.569643 3_2:+88368853 None:intergenic
ATCAATTGAACAAGTTGCAT+AGG 0.570855 3_2:+88369134 None:intergenic
AACATTACAGCGAAAAGGAA+AGG 0.574650 3_2:+88366230 None:intergenic
GGCTTTGGTAATAACATCCA+TGG 0.580963 3_2:+88365205 None:intergenic
TCAACATGGTCAACGAGAGA+TGG 0.582556 3_2:-88368553 Msa0435230:CDS
AAGAAATGTCTCCTTGCAGA+AGG 0.583352 3_2:-88367069 Msa0435230:CDS
ATTCTATTTCGTGCTACTAG+GGG 0.585573 3_2:-88367929 Msa0435230:CDS
ACATCCCTTAATGACGAGGA+TGG 0.586134 3_2:-88363957 Msa0435230:CDS
ATCCTAAATGGCATGGCACA+CGG 0.589895 3_2:-88365747 Msa0435230:CDS
TAGATCGCCAAGGTAAGAGA+TGG 0.589934 3_2:+88369085 None:intergenic
AAAATGGTGCACTGGATCAC+AGG 0.590090 3_2:-88365444 Msa0435230:CDS
GGCGTAGATCCTAAATGGCA+TGG 0.594393 3_2:-88365754 Msa0435230:CDS
AATCAAAACCACCTGCATGT+AGG 0.594477 3_2:+88365889 None:intergenic
CCACGTGACTCTGATTCAAG+AGG 0.607108 3_2:+88365024 None:intergenic
TTATGACTTGTAGGAGACAA+CGG 0.617041 3_2:-88368029 Msa0435230:intron
GATGTCGCGATCCTACATGC+AGG 0.623019 3_2:-88365900 Msa0435230:intron
ATTTACATCCCTTAATGACG+AGG 0.635826 3_2:-88363961 Msa0435230:CDS
CAAATATATCTCCATCAACA+TGG 0.637172 3_2:-88368567 Msa0435230:CDS
CAAATAGGTTAAAAGATGTG+GGG 0.638472 3_2:-88368635 Msa0435230:intron
GGACTGTAACTCTCAAGTAG+AGG 0.646147 3_2:-88366899 Msa0435230:CDS
CAGTAAAGCAGATAAAATTG+GGG 0.648121 3_2:-88368000 Msa0435230:CDS
GCTGTAATGTTTGGTGATTG+GGG 0.649165 3_2:-88366218 Msa0435230:CDS
CCCATTGTAGATCAAAGAGT+AGG 0.649812 3_2:+88365053 None:intergenic
GTGATGATTGTGTACACACC+AGG 0.653396 3_2:+88366257 None:intergenic
CAGGACACCAGCCTTCTGCA+AGG 0.658702 3_2:+88367058 None:intergenic
CTGTTCAAGAATACAATTTG+GGG 0.666631 3_2:+88365500 None:intergenic
AATGCCAACAATGAGAACAA+TGG 0.667477 3_2:+88364124 None:intergenic
CCTCTTGAATCAGAGTCACG+TGG 0.695438 3_2:-88365024 Msa0435230:CDS
TGAGGAGTTTGATTTCAGCG+AGG 0.723862 3_2:-88364986 Msa0435230:CDS
CTACTCTTTGATCTACAATG+GGG 0.740978 3_2:-88365052 Msa0435230:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TAATGTATATTTTTAACTTT+TGG + chr3_2:88365316-88365335 None:intergenic 10.0%
!!! TGTATTCATTATATTTTATT+CGG - chr3_2:88365457-88365476 Msa0435230:CDS 10.0%
!! AAACAATTCAAAATTATTAA+TGG + chr3_2:88366564-88366583 None:intergenic 10.0%
!!! AAAGAAGTATTTAATTGTTT+TGG + chr3_2:88364348-88364367 None:intergenic 15.0%
!!! TTTTAACCTATTTGATAAAA+CGG + chr3_2:88364464-88364483 None:intergenic 15.0%
!! TAAAATGGTAAAAACAAATA+CGG + chr3_2:88364872-88364891 None:intergenic 15.0%
!!! GTATTCATTATATTTTATTC+GGG - chr3_2:88365458-88365477 Msa0435230:CDS 15.0%
!! AAAATTTAATTCACATTTCA+AGG + chr3_2:88366096-88366115 None:intergenic 15.0%
!!! ATCAATGAAAAAAAGTTTTA+CGG - chr3_2:88366950-88366969 Msa0435230:intron 15.0%
!!! CTAAATATTTTCTAGTTTAT+TGG - chr3_2:88367007-88367026 Msa0435230:intron 15.0%
!!! ATATTTATTATCCTTTTTTC+AGG - chr3_2:88367280-88367299 Msa0435230:intron 15.0%
!!! TATTTATTATCCTTTTTTCA+GGG - chr3_2:88367281-88367300 Msa0435230:intron 15.0%
!! GTTCAATTTATAATACAATT+CGG - chr3_2:88368347-88368366 Msa0435230:CDS 15.0%
!!! GATTGACAATTTTTTTTATA+CGG - chr3_2:88368425-88368444 Msa0435230:intron 15.0%
!!! ATTGACAATTTTTTTTATAC+GGG - chr3_2:88368426-88368445 Msa0435230:intron 15.0%
!!! ATTACTTTATTATTTTACAC+CGG - chr3_2:88368617-88368636 Msa0435230:CDS 15.0%
!! ATAAAAAAGATATAACTTCA+AGG + chr3_2:88368754-88368773 None:intergenic 15.0%
!! TTCTATTGATCTAGAAAATT+TGG - chr3_2:88364575-88364594 Msa0435230:intron 20.0%
!!! AATTTTCATATCTTTTCTAC+CGG - chr3_2:88364618-88364637 Msa0435230:intron 20.0%
!!! GTATTTGTTTTTACCATTTT+AGG - chr3_2:88364871-88364890 Msa0435230:intron 20.0%
!! TATACTTGTTCCATTAATAA+TGG + chr3_2:88364989-88365008 None:intergenic 20.0%
!!! TTAGAAATTTTATGACTTGT+AGG - chr3_2:88365067-88365086 Msa0435230:CDS 20.0%
!!! ATATTTTTAACTTTTGGAAG+AGG + chr3_2:88365310-88365329 None:intergenic 20.0%
!! CTTTAATTCTACAATTCTTT+CGG + chr3_2:88365720-88365739 None:intergenic 20.0%
!!! CATATTTAGAATGTGATAAA+TGG + chr3_2:88365998-88366017 None:intergenic 20.0%
!! AAAAATGTTAGTGCAAAAAT+AGG + chr3_2:88366271-88366290 None:intergenic 20.0%
!! TATAATAACAGTAATGCATA+TGG - chr3_2:88366372-88366391 Msa0435230:intron 20.0%
!!! CTAATCTTATTTTTCTAGAA+AGG - chr3_2:88366408-88366427 Msa0435230:intron 20.0%
!! TTGAAACAAAATATATGACA+AGG + chr3_2:88366435-88366454 None:intergenic 20.0%
!!! TAACAATTGAGCTTTTTTTA+AGG - chr3_2:88366613-88366632 Msa0435230:intron 20.0%
!!! AGTCCTTTAGTTTTAAATTA+AGG - chr3_2:88366687-88366706 Msa0435230:intron 20.0%
!!! CAACCTTAATTTAAAACTAA+AGG + chr3_2:88366693-88366712 None:intergenic 20.0%
!!! CTTTAGTTTTAAATTAAGGT+TGG - chr3_2:88366691-88366710 Msa0435230:intron 20.0%
!!! ACATATTAGAAATGGTTTTT+GGG - chr3_2:88367076-88367095 Msa0435230:CDS 20.0%
!! GAGATATATTATTATGATGA+TGG - chr3_2:88367101-88367120 Msa0435230:CDS 20.0%
!!! TATGTTGTTTTCAAAGTATT+TGG + chr3_2:88367481-88367500 None:intergenic 20.0%
!! TTGAAAACAACATAAACATA+TGG - chr3_2:88367487-88367506 Msa0435230:intron 20.0%
!! TAACTTTAATTAGTTGAATG+TGG - chr3_2:88367523-88367542 Msa0435230:intron 20.0%
!!! TGTGTACTATTAAATTTGTT+AGG - chr3_2:88367845-88367864 Msa0435230:intron 20.0%
!! TTAGGTTATATTACTATTGT+TGG - chr3_2:88367863-88367882 Msa0435230:intron 20.0%
!! ATTCTATTGTATGTATAAGT+TGG + chr3_2:88368155-88368174 None:intergenic 20.0%
!! TAATTAAGTAGTTGAAAGTT+TGG - chr3_2:88368231-88368250 Msa0435230:intron 20.0%
!! AATTAAGTAGTTGAAAGTTT+GGG - chr3_2:88368232-88368251 Msa0435230:intron 20.0%
! ATTGATCATTCCAATTGAAT+CGG - chr3_2:88363988-88364007 Msa0435230:CDS 25.0%
! ATACATCTTTGAACTGAAAA+AGG + chr3_2:88364048-88364067 None:intergenic 25.0%
!!! TTTTTCAGTTCAAAGATGTA+TGG - chr3_2:88364047-88364066 Msa0435230:CDS 25.0%
! ATAAAGAATACAAAGTGAGA+AGG + chr3_2:88364096-88364115 None:intergenic 25.0%
! TATGCATACATAGATGTTAT+AGG + chr3_2:88364272-88364291 None:intergenic 25.0%
! ATGCATAGTTGCATTTAAAA+AGG - chr3_2:88364285-88364304 Msa0435230:intron 25.0%
! ATCAAATAGGTTAAAAGATG+TGG - chr3_2:88364468-88364487 Msa0435230:intron 25.0%
! TCAAATAGGTTAAAAGATGT+GGG - chr3_2:88364469-88364488 Msa0435230:intron 25.0%
! ATTTAAGGAGCAAATGAAAA+AGG - chr3_2:88364515-88364534 Msa0435230:intron 25.0%
! TATTGATCTAGAAAATTTGG+AGG - chr3_2:88364578-88364597 Msa0435230:intron 25.0%
! GAAGAAAAATTGTGTTACAT+GGG + chr3_2:88364657-88364676 None:intergenic 25.0%
! TGAAGAAAAATTGTGTTACA+TGG + chr3_2:88364658-88364677 None:intergenic 25.0%
!! TGTAACACAATTTTTCTTCA+TGG - chr3_2:88364658-88364677 Msa0435230:intron 25.0%
!! CAATTTTTCTTCATGGATAT+AGG - chr3_2:88364665-88364684 Msa0435230:intron 25.0%
! TGAATTAATCTCAATTAGCT+CGG + chr3_2:88364712-88364731 None:intergenic 25.0%
! ATAATTAACCATATGTAGCT+TGG - chr3_2:88364797-88364816 Msa0435230:intron 25.0%
!!! TTGTTTTTACCATTTTAGGT+TGG - chr3_2:88364875-88364894 Msa0435230:intron 25.0%
!!! TGTTTTTACCATTTTAGGTT+GGG - chr3_2:88364876-88364895 Msa0435230:intron 25.0%
!! TATTGACTGTCCATTATTAA+TGG - chr3_2:88364976-88364995 Msa0435230:CDS 25.0%
! ATATAAACTACAAAGTTGCA+GGG + chr3_2:88365012-88365031 None:intergenic 25.0%
! AATATAAACTACAAAGTTGC+AGG + chr3_2:88365013-88365032 None:intergenic 25.0%
! ATAAAATTGGGGTTTATAAC+CGG - chr3_2:88365116-88365135 Msa0435230:intron 25.0%
! AAATATACATTATGCACACT+AGG - chr3_2:88365324-88365343 Msa0435230:intron 25.0%
! AAGAGTAACTAACAATACAA+TGG + chr3_2:88365378-88365397 None:intergenic 25.0%
!! AACAAAATTTGTGATGCTTT+TGG - chr3_2:88365503-88365522 Msa0435230:CDS 25.0%
! TGTATCATATAAACTATGCA+TGG + chr3_2:88365871-88365890 None:intergenic 25.0%
!! TTTTCTTCAATAGTTGCAAA+AGG - chr3_2:88365966-88365985 Msa0435230:CDS 25.0%
!!! TTTTTTGAATCTGCATAGAT+AGG + chr3_2:88366167-88366186 None:intergenic 25.0%
!! TTTTTATGGCATGAAAAATG+TGG + chr3_2:88366590-88366609 None:intergenic 25.0%
!! CTCAATTGTTAGCATTTTTA+TGG + chr3_2:88366604-88366623 None:intergenic 25.0%
! AAAAATGACATTGATGTCTA+AGG + chr3_2:88366648-88366667 None:intergenic 25.0%
!!! CAATTAAATTTTTGAGCTCT+AGG + chr3_2:88366789-88366808 None:intergenic 25.0%
! ACATCAAATAAAACTACAGT+TGG + chr3_2:88367034-88367053 None:intergenic 25.0%
!! GACATATTAGAAATGGTTTT+TGG - chr3_2:88367075-88367094 Msa0435230:CDS 25.0%
!! CATATTAGAAATGGTTTTTG+GGG - chr3_2:88367077-88367096 Msa0435230:CDS 25.0%
!!! ATATTAGAAATGGTTTTTGG+GGG - chr3_2:88367078-88367097 Msa0435230:CDS 25.0%
! TATGATACTCGTATATAACA+TGG + chr3_2:88367263-88367282 None:intergenic 25.0%
!! ATTTTAAGCGAGTTAAGAAA+TGG + chr3_2:88367393-88367412 None:intergenic 25.0%
! AATGAAGATGTCAATTCTAT+TGG - chr3_2:88367410-88367429 Msa0435230:intron 25.0%
! ATGAAGATGTCAATTCTATT+GGG - chr3_2:88367411-88367430 Msa0435230:intron 25.0%
! TATGATTCCAAGATTCATTT+GGG + chr3_2:88367442-88367461 None:intergenic 25.0%
! ATATGATTCCAAGATTCATT+TGG + chr3_2:88367443-88367462 None:intergenic 25.0%
!! TTCTTACTTGAAAGAACTTT+TGG + chr3_2:88367763-88367782 None:intergenic 25.0%
! AATAGTACACAATTTAGATG+TGG + chr3_2:88367836-88367855 None:intergenic 25.0%
! GGTAATAAAAATTAGAGTCA+GGG + chr3_2:88368004-88368023 None:intergenic 25.0%
! AGGTAATAAAAATTAGAGTC+AGG + chr3_2:88368005-88368024 None:intergenic 25.0%
!! ATCATCTACCATACTTTTAA+GGG + chr3_2:88368326-88368345 None:intergenic 25.0%
!! AATCATCTACCATACTTTTA+AGG + chr3_2:88368327-88368346 None:intergenic 25.0%
! AAAGCAAGATAAGAAACTAA+AGG + chr3_2:88368543-88368562 None:intergenic 25.0%
! TTTGAATCAAATAAAGCTTG+TGG + chr3_2:88368717-88368736 None:intergenic 25.0%
! TAAGGGATGTAAATGAAAAT+GGG + chr3_2:88369138-88369157 None:intergenic 25.0%
! TTAAGGGATGTAAATGAAAA+TGG + chr3_2:88369139-88369158 None:intergenic 25.0%
ATCAATTGAACAAGTTGCAT+AGG + chr3_2:88363974-88363993 None:intergenic 30.0%
TTGTATTCTTTATGACGCTT+CGG - chr3_2:88364103-88364122 Msa0435230:CDS 30.0%
! ACTGATTTACTAGACTAGAT+TGG - chr3_2:88364430-88364449 Msa0435230:intron 30.0%
! AGCTTACCGTTTTATCAAAT+AGG - chr3_2:88364455-88364474 Msa0435230:intron 30.0%
CAAATAGGTTAAAAGATGTG+GGG - chr3_2:88364470-88364489 Msa0435230:intron 30.0%
GCGTAAGTTGCATTTATTTA+AGG - chr3_2:88364500-88364519 Msa0435230:intron 30.0%
CAAATATATCTCCATCAACA+TGG - chr3_2:88364538-88364557 Msa0435230:intron 30.0%
TTGTCTTCTCTAACCTATAA+GGG + chr3_2:88364829-88364848 None:intergenic 30.0%
ATTGTCTTCTCTAACCTATA+AGG + chr3_2:88364830-88364849 None:intergenic 30.0%
!!! GTTTTTACCATTTTAGGTTG+GGG - chr3_2:88364877-88364896 Msa0435230:intron 30.0%
TCCAGTAAAGCAGATAAAAT+TGG - chr3_2:88365103-88365122 Msa0435230:intron 30.0%
CCAGTAAAGCAGATAAAATT+GGG - chr3_2:88365104-88365123 Msa0435230:intron 30.0%
CAGTAAAGCAGATAAAATTG+GGG - chr3_2:88365105-88365124 Msa0435230:intron 30.0%
CGAAATAGAATTCTTTCGAA+AGG + chr3_2:88365167-88365186 None:intergenic 30.0%
! AATTCTATTTCGTGCTACTA+GGG - chr3_2:88365175-88365194 Msa0435230:intron 30.0%
TGGTAAATGCTAAAATGATG+AGG + chr3_2:88365358-88365377 None:intergenic 30.0%
! CATTTTTATGAACCTGTGTA+AGG + chr3_2:88365439-88365458 None:intergenic 30.0%
GGTAGACAAAATATTATCCT+TGG - chr3_2:88365583-88365602 Msa0435230:intron 30.0%
TATTCTACCTAGTATGAATG+TGG - chr3_2:88365646-88365665 Msa0435230:CDS 30.0%
GTAATATCCACATTCATACT+AGG + chr3_2:88365656-88365675 None:intergenic 30.0%
AAACCTGGCAATTTCATAAT+GGG + chr3_2:88365697-88365716 None:intergenic 30.0%
TTAAAGACAACCATTGATGT+AGG - chr3_2:88365734-88365753 Msa0435230:CDS 30.0%
!! AGCAATTTGTTGCAAACAAT+TGG - chr3_2:88365770-88365789 Msa0435230:CDS 30.0%
ATGTTAGTGCAAAAATAGGT+GGG + chr3_2:88366267-88366286 None:intergenic 30.0%
AATGTTAGTGCAAAAATAGG+TGG + chr3_2:88366268-88366287 None:intergenic 30.0%
AAGAAATTGTAGACGCATAT+GGG - chr3_2:88366304-88366323 Msa0435230:intron 30.0%
ATTGTTGCATCTTCATGTAT+GGG - chr3_2:88366756-88366775 Msa0435230:intron 30.0%
TCATGGCATATGCTTATTAT+TGG - chr3_2:88366910-88366929 Msa0435230:CDS 30.0%
! TGAAAAAAAGTTTTACGGTC+AGG - chr3_2:88366955-88366974 Msa0435230:intron 30.0%
TGTTGTTAATTGCAGAAACT+TGG - chr3_2:88367051-88367070 Msa0435230:CDS 30.0%
ACTTGGAGACATATTAGAAA+TGG - chr3_2:88367068-88367087 Msa0435230:CDS 30.0%
!! TATTAGAAATGGTTTTTGGG+GGG - chr3_2:88367079-88367098 Msa0435230:CDS 30.0%
GATTGTCCAAATAGTTCAAA+CGG + chr3_2:88367177-88367196 None:intergenic 30.0%
CTAATTACCTATATTGCTTC+AGG - chr3_2:88367570-88367589 Msa0435230:intron 30.0%
ATACAATTTGGGGAACAAAT+TGG + chr3_2:88367598-88367617 None:intergenic 30.0%
CTGTTCAAGAATACAATTTG+GGG + chr3_2:88367608-88367627 None:intergenic 30.0%
GCTGTTCAAGAATACAATTT+GGG + chr3_2:88367609-88367628 None:intergenic 30.0%
CACTCCTCATAATTGTAAAA+TGG - chr3_2:88367645-88367664 Msa0435230:intron 30.0%
! TGCACCATTTTACAATTATG+AGG + chr3_2:88367652-88367671 None:intergenic 30.0%
ATAATTGTAAAATGGTGCAC+TGG - chr3_2:88367653-88367672 Msa0435230:intron 30.0%
!! TGTTGTTTCTTCAAGAGAAA+GGG + chr3_2:88367924-88367943 None:intergenic 30.0%
!! ATGTTGTTTCTTCAAGAGAA+AGG + chr3_2:88367925-88367944 None:intergenic 30.0%
AAATTAGAGTCAGGGTTTAA+TGG + chr3_2:88367996-88368015 None:intergenic 30.0%
TTATTACCTTGATTACTCAG+AGG - chr3_2:88368016-88368035 Msa0435230:CDS 30.0%
CATACAATAGAATTTGTGCT+TGG - chr3_2:88368162-88368181 Msa0435230:CDS 30.0%
TCAACTACTTAATTACCTGA+GGG + chr3_2:88368226-88368245 None:intergenic 30.0%
TTCAACTACTTAATTACCTG+AGG + chr3_2:88368227-88368246 None:intergenic 30.0%
CTAATTCAACATGAACATGA+TGG - chr3_2:88368290-88368309 Msa0435230:intron 30.0%
! TCATCTACCATACTTTTAAG+GGG + chr3_2:88368325-88368344 None:intergenic 30.0%
CATTGATAAATCACAATCCA+AGG - chr3_2:88368370-88368389 Msa0435230:CDS 30.0%
ATCAAATAAAGCTTGTGGTT+GGG + chr3_2:88368712-88368731 None:intergenic 30.0%
AATCAAATAAAGCTTGTGGT+TGG + chr3_2:88368713-88368732 None:intergenic 30.0%
CAAAGAGCAATATGAATGAT+AGG + chr3_2:88368793-88368812 None:intergenic 30.0%
CTATCATTCATATTGCTCTT+TGG - chr3_2:88368791-88368810 Msa0435230:intron 30.0%
!!! TATTGCTCTTTGGTGTTTTT+TGG - chr3_2:88368801-88368820 Msa0435230:intron 30.0%
TGAATGAGCTAAACTAAACA+TGG + chr3_2:88368827-88368846 None:intergenic 30.0%
TGTATTTGTGTGATTGATGT+AGG - chr3_2:88368948-88368967 Msa0435230:intron 30.0%
!! GTTTTTATTTGTGCAACTGT+TGG - chr3_2:88369007-88369026 Msa0435230:intron 30.0%
! GGACACAGATTGGTAATTAA+AGG + chr3_2:88364075-88364094 None:intergenic 35.0%
TAGAAAATTTGGAGGTTGTC+AGG - chr3_2:88364586-88364605 Msa0435230:intron 35.0%
!!! GTACAAGCTTGTTTTAGAGA+AGG - chr3_2:88364773-88364792 Msa0435230:intron 35.0%
AAAAACTCCCCAACCTAAAA+TGG + chr3_2:88364887-88364906 None:intergenic 35.0%
AAGTTCAACCAACTGTTGAA+GGG - chr3_2:88364951-88364970 Msa0435230:CDS 35.0%
AGCATCATCAACAAATGACA+TGG + chr3_2:88365048-88365067 None:intergenic 35.0%
! TTATGACTTGTAGGAGACAA+CGG - chr3_2:88365076-88365095 Msa0435230:intron 35.0%
! CCCAATTTTATCTGCTTTAC+TGG + chr3_2:88365107-88365126 None:intergenic 35.0%
!! TTATAACCGGTCTTGTTACT+AGG - chr3_2:88365129-88365148 Msa0435230:intron 35.0%
!! TATAACCGGTCTTGTTACTA+GGG - chr3_2:88365130-88365149 Msa0435230:intron 35.0%
! TTTTTCCCTAGTAACAAGAC+CGG + chr3_2:88365138-88365157 None:intergenic 35.0%
! GAATTCTATTTCGTGCTACT+AGG - chr3_2:88365174-88365193 Msa0435230:intron 35.0%
! ATTCTATTTCGTGCTACTAG+GGG - chr3_2:88365176-88365195 Msa0435230:intron 35.0%
CTTAATCTTCTACCTTACAC+AGG - chr3_2:88365424-88365443 Msa0435230:CDS 35.0%
TTACTCATGTCATCTGAGAA+GGG + chr3_2:88365542-88365561 None:intergenic 35.0%
TTTACTCATGTCATCTGAGA+AGG + chr3_2:88365543-88365562 None:intergenic 35.0%
ACAATTTCAGATGATGACAG+AGG - chr3_2:88365562-88365581 Msa0435230:intron 35.0%
TGCAGACAAAACAAAAACCA+AGG + chr3_2:88365603-88365622 None:intergenic 35.0%
TTTCCCATTATGAAATTGCC+AGG - chr3_2:88365691-88365710 Msa0435230:CDS 35.0%
GAAACCTGGCAATTTCATAA+TGG + chr3_2:88365698-88365717 None:intergenic 35.0%
ATGAAGCAAACCTACATCAA+TGG + chr3_2:88365747-88365766 None:intergenic 35.0%
TTGGATATCAATTTGAGCAG+TGG - chr3_2:88365789-88365808 Msa0435230:CDS 35.0%
TCACATTTCAAGGAAAAACC+TGG + chr3_2:88366086-88366105 None:intergenic 35.0%
CAAGAAATTGTAGACGCATA+TGG - chr3_2:88366303-88366322 Msa0435230:intron 35.0%
CATTGTTGCATCTTCATGTA+TGG - chr3_2:88366755-88366774 Msa0435230:intron 35.0%
AACATTACAGCGAAAAGGAA+AGG + chr3_2:88366878-88366897 None:intergenic 35.0%
! TTCCTTTTCGCTGTAATGTT+TGG - chr3_2:88366878-88366897 Msa0435230:CDS 35.0%
! CACTTTTCTCAATCTACACT+GGG - chr3_2:88367124-88367143 Msa0435230:CDS 35.0%
TCCATTCCGTTTGAACTATT+TGG - chr3_2:88367168-88367187 Msa0435230:intron 35.0%
TCCAAATAGTTCAAACGGAA+TGG + chr3_2:88367172-88367191 None:intergenic 35.0%
TTTACGAGTATCTGCCTATT+TGG - chr3_2:88367237-88367256 Msa0435230:intron 35.0%
CGTATATAACATGGCCAAAT+AGG + chr3_2:88367254-88367273 None:intergenic 35.0%
GGCTGTTCAAGAATACAATT+TGG + chr3_2:88367610-88367629 None:intergenic 35.0%
GTATTCTTGAACAGCCTATT+TGG - chr3_2:88367614-88367633 Msa0435230:intron 35.0%
TCTAAGTCCAACAGATGATT+TGG - chr3_2:88367715-88367734 Msa0435230:intron 35.0%
CTAAGTCCAACAGATGATTT+GGG - chr3_2:88367716-88367735 Msa0435230:intron 35.0%
! TTTTCACCCAAATCATCTGT+TGG + chr3_2:88367725-88367744 None:intergenic 35.0%
TTTATGCCTCTGAGTAATCA+AGG + chr3_2:88368025-88368044 None:intergenic 35.0%
TCCTACTCTTTGATCTACAA+TGG - chr3_2:88368051-88368070 Msa0435230:intron 35.0%
CCTACTCTTTGATCTACAAT+GGG - chr3_2:88368052-88368071 Msa0435230:intron 35.0%
CTACTCTTTGATCTACAATG+GGG - chr3_2:88368053-88368072 Msa0435230:intron 35.0%
TGGTATTCACAAAAACCATG+AGG - chr3_2:88368101-88368120 Msa0435230:intron 35.0%
AGCTTCCTATCTTCGTTTAT+GGG - chr3_2:88368200-88368219 Msa0435230:CDS 35.0%
TTGTTTCCCCCTTAAAAGTA+TGG - chr3_2:88368315-88368334 Msa0435230:intron 35.0%
!! CATCTACCATACTTTTAAGG+GGG + chr3_2:88368324-88368343 None:intergenic 35.0%
TTCATGATTCTTGTCATCCT+TGG + chr3_2:88368390-88368409 None:intergenic 35.0%
GAGTTCAGACAAGTATTTGT+AGG - chr3_2:88368661-88368680 Msa0435230:intron 35.0%
AACACCATTGTTCTCATTGT+TGG - chr3_2:88368977-88368996 Msa0435230:intron 35.0%
AATGCCAACAATGAGAACAA+TGG + chr3_2:88368984-88369003 None:intergenic 35.0%
! TTCCAGAACAAGTTTTACGA+GGG - chr3_2:88369094-88369113 Msa0435230:CDS 35.0%
ATTTACATCCCTTAATGACG+AGG - chr3_2:88369144-88369163 Msa0435230:CDS 35.0%
AAAGTGAGAAGGACACAGAT+TGG + chr3_2:88364085-88364104 None:intergenic 40.0%
AAGCATAGGTCTGTTGGAAT+GGG + chr3_2:88364241-88364260 None:intergenic 40.0%
TATAGGTACCTGTGAAGCAT+AGG + chr3_2:88364255-88364274 None:intergenic 40.0%
GGAAAAGACCAAGCTACATA+TGG + chr3_2:88364808-88364827 None:intergenic 40.0%
!! AGCTTGGTCTTTTCCCTTAT+AGG - chr3_2:88364813-88364832 Msa0435230:intron 40.0%
GTTGAACTTCAAGCTCTCTT+TGG + chr3_2:88364940-88364959 None:intergenic 40.0%
GAAGTTCAACCAACTGTTGA+AGG - chr3_2:88364950-88364969 Msa0435230:CDS 40.0%
TCAATAGACCCTTCAACAGT+TGG + chr3_2:88364962-88364981 None:intergenic 40.0%
!!! TGTTTTTCTGAAGCAAGCTG+TGG - chr3_2:88365202-88365221 Msa0435230:CDS 40.0%
! CATGTTCTAGATCCTTTGTC+AGG - chr3_2:88365233-88365252 Msa0435230:CDS 40.0%
AGATCCTTTGTCAGGAGAAA+AGG - chr3_2:88365241-88365260 Msa0435230:CDS 40.0%
! GTAACCTTTTCTCCTGACAA+AGG + chr3_2:88365248-88365267 None:intergenic 40.0%
AATGCTAAAATGATGAGGCG+TGG + chr3_2:88365353-88365372 None:intergenic 40.0%
CTACAATTCTTTCGGAAACC+TGG + chr3_2:88365712-88365731 None:intergenic 40.0%
ATTTGAGCAGTGGAATCTTC+TGG - chr3_2:88365799-88365818 Msa0435230:CDS 40.0%
AAGAAATGTCTCCTTGCAGA+AGG - chr3_2:88366036-88366055 Msa0435230:CDS 40.0%
AACATTGATGCGAGCAACTA+TGG - chr3_2:88366185-88366204 Msa0435230:CDS 40.0%
TTAGTGCAAAAATAGGTGGG+TGG + chr3_2:88366264-88366283 None:intergenic 40.0%
CACCAAACATTACAGCGAAA+AGG + chr3_2:88366883-88366902 None:intergenic 40.0%
! TCGCTGTAATGTTTGGTGAT+TGG - chr3_2:88366885-88366904 Msa0435230:CDS 40.0%
! CGCTGTAATGTTTGGTGATT+GGG - chr3_2:88366886-88366905 Msa0435230:CDS 40.0%
! GCTGTAATGTTTGGTGATTG+GGG - chr3_2:88366887-88366906 Msa0435230:CDS 40.0%
! GCACTTTTCTCAATCTACAC+TGG - chr3_2:88367123-88367142 Msa0435230:CDS 40.0%
CTATTTGGACAATCTGCCTA+TGG - chr3_2:88367183-88367202 Msa0435230:intron 40.0%
AATCAAAACCACCTGCATGT+AGG + chr3_2:88367219-88367238 None:intergenic 40.0%
GTAGTAGCATCCCTGAAAAA+AGG + chr3_2:88367294-88367313 None:intergenic 40.0%
TTCAGGGATGCTACTACAAT+AGG - chr3_2:88367297-88367316 Msa0435230:intron 40.0%
GGATGCTACTACAATAGGTT+TGG - chr3_2:88367302-88367321 Msa0435230:intron 40.0%
! CATTTAGGATCTACGCCAAA+TGG + chr3_2:88367348-88367367 None:intergenic 40.0%
CATTTGGCGTAGATCCTAAA+TGG - chr3_2:88367346-88367365 Msa0435230:CDS 40.0%
! GGAGTATCCCAAATGAATCT+TGG - chr3_2:88367432-88367451 Msa0435230:intron 40.0%
! ATTGGTGCCTGAAGCAATAT+AGG + chr3_2:88367580-88367599 None:intergenic 40.0%
GGAGTGAAAGATAGCCAAAT+AGG + chr3_2:88367631-88367650 None:intergenic 40.0%
! GGCTTTGGTAATAACATCCA+TGG + chr3_2:88367903-88367922 None:intergenic 40.0%
TTCTTCAAGAGAAAGGGCTT+TGG + chr3_2:88367918-88367937 None:intergenic 40.0%
CCCATTGTAGATCAAAGAGT+AGG + chr3_2:88368055-88368074 None:intergenic 40.0%
CAGCTTCCTATCTTCGTTTA+TGG - chr3_2:88368199-88368218 Msa0435230:CDS 40.0%
TAAAGCTTGTGGTTGGGTAT+AGG + chr3_2:88368706-88368725 None:intergenic 40.0%
! ACAAAGTTTTGCTTCTCGCA+TGG - chr3_2:88368869-88368888 Msa0435230:CDS 40.0%
! CAAAGTTTTGCTTCTCGCAT+GGG - chr3_2:88368870-88368889 Msa0435230:CDS 40.0%
! AAAGTTTTGCTTCTCGCATG+GGG - chr3_2:88368871-88368890 Msa0435230:CDS 40.0%
TAGGTGTGTTATGCAAGTGA+AGG - chr3_2:88368905-88368924 Msa0435230:intron 40.0%
! TGTTGGTGTCTTACTGGTAA+TGG - chr3_2:88369024-88369043 Msa0435230:intron 40.0%
!! TGCATGCTTTGAGACTTCAT+TGG - chr3_2:88369065-88369084 Msa0435230:CDS 40.0%
!! GCATGCTTTGAGACTTCATT+GGG - chr3_2:88369066-88369085 Msa0435230:CDS 40.0%
! GTTCCAGAACAAGTTTTACG+AGG - chr3_2:88369093-88369112 Msa0435230:CDS 40.0%
! AACAAGTTTTACGAGGGAGA+TGG - chr3_2:88369100-88369119 Msa0435230:CDS 40.0%
! GATCGATGAGCCGATTCAAT+TGG + chr3_2:88364001-88364020 None:intergenic 45.0%
CATCGATCCATCTCTTACCT+TGG - chr3_2:88364013-88364032 Msa0435230:CDS 45.0%
TAGATCGCCAAGGTAAGAGA+TGG + chr3_2:88364023-88364042 None:intergenic 45.0%
ATCTCTTACCTTGGCGATCT+AGG - chr3_2:88364022-88364041 Msa0435230:CDS 45.0%
GAAGCATAGGTCTGTTGGAA+TGG + chr3_2:88364242-88364261 None:intergenic 45.0%
TCTCTCGTTGACCATGTTGA+TGG + chr3_2:88364552-88364571 None:intergenic 45.0%
TCAACATGGTCAACGAGAGA+TGG - chr3_2:88364552-88364571 Msa0435230:intron 45.0%
CATGGGAATGCTCTCTTTAC+CGG + chr3_2:88364640-88364659 None:intergenic 45.0%
! GGTTGGGGAGTTTTTCTCTT+CGG - chr3_2:88364892-88364911 Msa0435230:intron 45.0%
!!! TCCTGTTTTTGCAACAAGCC+AGG - chr3_2:88366065-88366084 Msa0435230:intron 45.0%
!! ACCTGGCTTGTTGCAAAAAC+AGG + chr3_2:88366069-88366088 None:intergenic 45.0%
GGACTGTAACTCTCAAGTAG+AGG - chr3_2:88366206-88366225 Msa0435230:CDS 45.0%
TGACAGAATTGCCAAGTACC+AGG - chr3_2:88366817-88366836 Msa0435230:CDS 45.0%
! AGGATTTGCTTCCTGGTACT+TGG + chr3_2:88366831-88366850 None:intergenic 45.0%
AAGTACCAGGAAGCAAATCC+TGG - chr3_2:88366830-88366849 Msa0435230:CDS 45.0%
GTGATGATTGTGTACACACC+AGG + chr3_2:88366851-88366870 None:intergenic 45.0%
! ATGTTTGGTGATTGGGGTCA+TGG - chr3_2:88366893-88366912 Msa0435230:CDS 45.0%
ATCCTAAATGGCATGGCACA+CGG - chr3_2:88367358-88367377 Msa0435230:CDS 45.0%
AAAATGGTGCACTGGATCAC+AGG - chr3_2:88367661-88367680 Msa0435230:intron 45.0%
GGTGAAAACCAGCTCTTTGT+TGG - chr3_2:88367737-88367756 Msa0435230:intron 45.0%
! ACTTTTGGCCAACAAAGAGC+TGG + chr3_2:88367748-88367767 None:intergenic 45.0%
TGGCACTCATTTCAGTACCA+TGG - chr3_2:88367883-88367902 Msa0435230:CDS 45.0%
CGCTGAAATCAAACTCCTCA+TGG + chr3_2:88368119-88368138 None:intergenic 45.0%
! TGAGGAGTTTGATTTCAGCG+AGG - chr3_2:88368119-88368138 Msa0435230:intron 45.0%
CTCGACTTTGACGGAAAAAC+CGG + chr3_2:88368639-88368658 None:intergenic 45.0%
TGAACTCACCTCGACTTTGA+CGG + chr3_2:88368648-88368667 None:intergenic 45.0%
! AAGTTTTGCTTCTCGCATGG+GGG - chr3_2:88368872-88368891 Msa0435230:CDS 45.0%
GCATGGGGGTAAGTAATTGT+AGG - chr3_2:88368886-88368905 Msa0435230:CDS 45.0%
! TGCAACTGTTGGTGTCTTAC+TGG - chr3_2:88369018-88369037 Msa0435230:intron 45.0%
! CTCCCTCGTAAAACTTGTTC+TGG + chr3_2:88369099-88369118 None:intergenic 45.0%
ACATCCCTTAATGACGAGGA+TGG - chr3_2:88369148-88369167 Msa0435230:CDS 45.0%
CAGTCCATCCTCGTCATTAA+GGG + chr3_2:88369155-88369174 None:intergenic 45.0%
ACAGTCCATCCTCGTCATTA+AGG + chr3_2:88369156-88369175 None:intergenic 45.0%
!!! AGTTTTATATATTTTTTATT+AGG - chr3_2:88368503-88368522 Msa0435230:intron 5.0%
GAAAAAGGCCTAGATCGCCA+AGG + chr3_2:88364033-88364052 None:intergenic 50.0%
CCTGTGAAGCATAGGTCTGT+TGG + chr3_2:88364247-88364266 None:intergenic 50.0%
CCAACAGACCTATGCTTCAC+AGG - chr3_2:88364244-88364263 Msa0435230:CDS 50.0%
GCTAAAATGATGAGGCGTGG+TGG + chr3_2:88365350-88365369 None:intergenic 50.0%
AATGTCTCCTTGCAGAAGGC+TGG - chr3_2:88366040-88366059 Msa0435230:CDS 50.0%
! ACACACCAGGATTTGCTTCC+TGG + chr3_2:88366838-88366857 None:intergenic 50.0%
TGTAGGATCGCGACATCCAT+AGG + chr3_2:88367202-88367221 None:intergenic 50.0%
GTGCGCGACACTTATCCATT+TGG - chr3_2:88367330-88367349 Msa0435230:CDS 50.0%
GGCGTAGATCCTAAATGGCA+TGG - chr3_2:88367351-88367370 Msa0435230:CDS 50.0%
CCACGTGACTCTGATTCAAG+AGG + chr3_2:88368084-88368103 None:intergenic 50.0%
CCTCTTGAATCAGAGTCACG+TGG - chr3_2:88368081-88368100 Msa0435230:intron 50.0%
GAGGGCCCATAAACGAAGAT+AGG + chr3_2:88368208-88368227 None:intergenic 50.0%
ATCTTCGTTTATGGGCCCTC+AGG - chr3_2:88368208-88368227 Msa0435230:CDS 50.0%
! CGGTTTTTCCGTCAAAGTCG+AGG - chr3_2:88368637-88368656 Msa0435230:intron 50.0%
GATGTCGCGATCCTACATGC+AGG - chr3_2:88367205-88367224 Msa0435230:intron 55.0%
! CTCCGTGTGCCATGCCATTT+AGG + chr3_2:88367363-88367382 None:intergenic 55.0%
CAGGACACCAGCCTTCTGCA+AGG + chr3_2:88366050-88366069 None:intergenic 60.0%
GTCGCGATCCTACATGCAGG+TGG - chr3_2:88367208-88367227 Msa0435230:intron 60.0%
Chromosome Type Strat End Strand Name
chr3_2 gene 88363950 88369177 88363950 ID=Msa0435230;Name=Msa0435230
chr3_2 mRNA 88363950 88369177 88363950 ID=Msa0435230-mRNA-1;Parent=Msa0435230;Name=Msa0435230-mRNA-1;_AED=0.15;_eAED=0.15;_QI=0|0|0|1|1|1|17|0|763
chr3_2 exon 88369064 88369177 88369064 ID=Msa0435230-mRNA-1:exon:25968;Parent=Msa0435230-mRNA-1
chr3_2 exon 88368862 88368906 88368862 ID=Msa0435230-mRNA-1:exon:25967;Parent=Msa0435230-mRNA-1
chr3_2 exon 88368528 88368650 88368528 ID=Msa0435230-mRNA-1:exon:25966;Parent=Msa0435230-mRNA-1
chr3_2 exon 88368333 88368440 88368333 ID=Msa0435230-mRNA-1:exon:25965;Parent=Msa0435230-mRNA-1
chr3_2 exon 88368124 88368234 88368124 ID=Msa0435230-mRNA-1:exon:25964;Parent=Msa0435230-mRNA-1
chr3_2 exon 88367865 88368038 88367865 ID=Msa0435230-mRNA-1:exon:25963;Parent=Msa0435230-mRNA-1
chr3_2 exon 88367307 88367414 88367307 ID=Msa0435230-mRNA-1:exon:25962;Parent=Msa0435230-mRNA-1
chr3_2 exon 88367041 88367148 88367041 ID=Msa0435230-mRNA-1:exon:25961;Parent=Msa0435230-mRNA-1
chr3_2 exon 88366802 88366950 88366802 ID=Msa0435230-mRNA-1:exon:25960;Parent=Msa0435230-mRNA-1
chr3_2 exon 88366151 88366304 88366151 ID=Msa0435230-mRNA-1:exon:25959;Parent=Msa0435230-mRNA-1
chr3_2 exon 88365901 88366061 88365901 ID=Msa0435230-mRNA-1:exon:25958;Parent=Msa0435230-mRNA-1
chr3_2 exon 88365619 88365825 88365619 ID=Msa0435230-mRNA-1:exon:25957;Parent=Msa0435230-mRNA-1
chr3_2 exon 88365352 88365535 88365352 ID=Msa0435230-mRNA-1:exon:25956;Parent=Msa0435230-mRNA-1
chr3_2 exon 88365177 88365260 88365177 ID=Msa0435230-mRNA-1:exon:25955;Parent=Msa0435230-mRNA-1
chr3_2 exon 88364898 88365091 88364898 ID=Msa0435230-mRNA-1:exon:25954;Parent=Msa0435230-mRNA-1
chr3_2 exon 88364234 88364293 88364234 ID=Msa0435230-mRNA-1:exon:25953;Parent=Msa0435230-mRNA-1
chr3_2 exon 88363950 88364157 88363950 ID=Msa0435230-mRNA-1:exon:25952;Parent=Msa0435230-mRNA-1
chr3_2 CDS 88369064 88369177 88369064 ID=Msa0435230-mRNA-1:cds;Parent=Msa0435230-mRNA-1
chr3_2 CDS 88368862 88368906 88368862 ID=Msa0435230-mRNA-1:cds;Parent=Msa0435230-mRNA-1
chr3_2 CDS 88368528 88368650 88368528 ID=Msa0435230-mRNA-1:cds;Parent=Msa0435230-mRNA-1
chr3_2 CDS 88368333 88368440 88368333 ID=Msa0435230-mRNA-1:cds;Parent=Msa0435230-mRNA-1
chr3_2 CDS 88368124 88368234 88368124 ID=Msa0435230-mRNA-1:cds;Parent=Msa0435230-mRNA-1
chr3_2 CDS 88367865 88368038 88367865 ID=Msa0435230-mRNA-1:cds;Parent=Msa0435230-mRNA-1
chr3_2 CDS 88367307 88367414 88367307 ID=Msa0435230-mRNA-1:cds;Parent=Msa0435230-mRNA-1
chr3_2 CDS 88367041 88367148 88367041 ID=Msa0435230-mRNA-1:cds;Parent=Msa0435230-mRNA-1
chr3_2 CDS 88366802 88366950 88366802 ID=Msa0435230-mRNA-1:cds;Parent=Msa0435230-mRNA-1
chr3_2 CDS 88366151 88366304 88366151 ID=Msa0435230-mRNA-1:cds;Parent=Msa0435230-mRNA-1
chr3_2 CDS 88365901 88366061 88365901 ID=Msa0435230-mRNA-1:cds;Parent=Msa0435230-mRNA-1
chr3_2 CDS 88365619 88365825 88365619 ID=Msa0435230-mRNA-1:cds;Parent=Msa0435230-mRNA-1
chr3_2 CDS 88365352 88365535 88365352 ID=Msa0435230-mRNA-1:cds;Parent=Msa0435230-mRNA-1
chr3_2 CDS 88365177 88365260 88365177 ID=Msa0435230-mRNA-1:cds;Parent=Msa0435230-mRNA-1
chr3_2 CDS 88364898 88365091 88364898 ID=Msa0435230-mRNA-1:cds;Parent=Msa0435230-mRNA-1
chr3_2 CDS 88364234 88364293 88364234 ID=Msa0435230-mRNA-1:cds;Parent=Msa0435230-mRNA-1
chr3_2 CDS 88363950 88364157 88363950 ID=Msa0435230-mRNA-1:cds;Parent=Msa0435230-mRNA-1
Gene Sequence

>Msa0435230

ATGGATCTTTTGCGATCAGAGCCTATGCAACTTGTTCAATTGATCATTCCAATTGAATCGGCTCATCGATCCATCTCTTACCTTGGCGATCTAGGCCTTTTTCAGTTCAAAGATCTTAATGAAGATAAAAGCCCATTCCAACAGACCTATGCTTCACAGGTTAAAAGATGTGGGGAAATGTCGCGTAAGTTGCATTTATTTAAGGAGCAAATGAAAAAGGCAAATATATCTCCATCAACATGGTCAACGAGAGATGGTTCTATTGATCTAGAAAATTTGGAGGTTAAACTAGCAGAACTTGAAGCCGAGCTAATTGAGATTAATTCAAACAATGAGAAGTTGCAGCACACTTATAATGAACTTATAGAGTACAAGCTTGTTTTAGAGAAGGTTGGGGAGTTTTTCTCTTCGGCACAAATTAGTGCAGCAACTCGCCAAAGAGAGCTTGAAGTTCAACCAACTGTTGAAGGGTCTATTGACTGTCCATTATTAATGGAACAAGAGACAACGGCATATCCAGTAAAGCAGATAAAATTGGGGTTTATAACCGGTCTTGTTACTAGGGAAAAATCAATTCCTTTCGAAAGAATTCTATTTCGTGCTACTAGGGGAAATGTTTTTCTGAAGCAAGCTGTGGTTGAACATCATGTTCTAGATCCTTTGTCAGGAGAAAAGGTTTCCGAAAGAATTGTAGAATTAAAGACAACCATTGATGTAGGTTTGCTTCATCGAAGCAATTTGTTGCAAACAATTGGATATCAATTTGAGCAGTGGAATCTTCTGTTGCAAAAGGAAAAGTCCATTTATCACATTCTAAATATGCTAAACATTAATGTGACAAAGAAATGTCTCCTTGCAGAAGGCTGGTGTCCTGTTTTTGCAACAAGCCAGATTCAAAAAACATTGATGCGAGCAACTATGGACTGTAACTCTCAAGTAGAGGCAATAGTTCAGATTTTGCAGACAAATGAGTTACCACCCACCTATTTTTGCACTAACATTTTTACTTCTTCTTTTCAAGAAATTGTAGACGCATATGGAATTGCCAAGTACCAGGAAGCAAATCCTGGTGTGTACACAATCATCACGTTTCCTTTCCTTTTCGCTGTAATGTTTGGTGATTGGGGTCATGGCATATGCTTATTATTGGCAACTTTCTATTTCATAATCAATGAAAAAAAGTTTTACGGTCAGAAACTTGGAGACATATTAGAAATGGTTTTTGGGGGGAGATATATTATTATGATGATGGCACTTTTCTCAATCTACACTGGGTTAATATATAATGAATTCTTCTCCATTCCGTTTGAACTATTTGGACAATCTGCCTATGGATGTCGCGATCCTACATGCAGGGATGCTACTACAATAGGTTTGGTAAAAGTGCGCGACACTTATCCATTTGGCGTAGATCCTAAATGGCATGGCACACGGAGTGAACTTCCATTTCTTAACTCGCTTAAAATGAAGATGTCAATTCTATTGGGAGTATCCCAAATGAATCTTGGAATCATATTGAGTTACTATAATGCCAAATACTTTGAAAACAACATAAACATATGGCACCAATTTGTTCCCCAAATTGTATTCTTGAACAGCCTATTTGGCTATCTTTCACTCCTCATAATTGTAAAATGGTGCACTGGATCACAGGCTGACTTGTATCATGTGATGATATACATGTTTCTAAGTCCAACAGATGATTTGGGTGAAAACCAGCTCTTTGTTGGCCAAAAGTTCTTTCAAGTTATATTACTATTGTTGGCACTCATTTCAGTACCATGGATGTTATTACCAAAGCCCTTTCTCTTGAAGAAACAACATCAAGAAAGGCATAAAAGTCAATCCTACTCTTTGATCTACAATGGGGATGATCCTCTTGAATCAGAGTCACGTGGTATTCACAAAAACCATGAGGAGTTTGATTTCAGCGAGGTTTTTGTGCACCAACTTATACATACAATAGAATTTGTGCTTGGAGCTGTGTCTAATACAGCTTCCTATCTTCGTTTATGGGCCCTCAGTTTAGCTCATTCAGAATTGTCAAGCGTTTTCTACGACAAAGTTTTGCTTCTCGCATGGGGGTATAACAACACCATTGTTCTCATTGTTGGCATTATTGTTTTTATTTGTGCAACTGTTGGTGTCTTACTGGTAATGGAAAGTCTAAGTGCGTTCTTGCATGCTTTGAGACTTCATTGGGTAGAGTTCCAGAACAAGTTTTACGAGGGAGATGGATACAAATTCTACCCATTTTCATTTACATCCCTTAATGACGAGGATGGACTGTAG

Protein sequence

>Msa0435230

MDLLRSEPMQLVQLIIPIESAHRSISYLGDLGLFQFKDLNEDKSPFQQTYASQVKRCGEMSRKLHLFKEQMKKANISPSTWSTRDGSIDLENLEVKLAELEAELIEINSNNEKLQHTYNELIEYKLVLEKVGEFFSSAQISAATRQRELEVQPTVEGSIDCPLLMEQETTAYPVKQIKLGFITGLVTREKSIPFERILFRATRGNVFLKQAVVEHHVLDPLSGEKVSERIVELKTTIDVGLLHRSNLLQTIGYQFEQWNLLLQKEKSIYHILNMLNINVTKKCLLAEGWCPVFATSQIQKTLMRATMDCNSQVEAIVQILQTNELPPTYFCTNIFTSSFQEIVDAYGIAKYQEANPGVYTIITFPFLFAVMFGDWGHGICLLLATFYFIINEKKFYGQKLGDILEMVFGGRYIIMMMALFSIYTGLIYNEFFSIPFELFGQSAYGCRDPTCRDATTIGLVKVRDTYPFGVDPKWHGTRSELPFLNSLKMKMSILLGVSQMNLGIILSYYNAKYFENNINIWHQFVPQIVFLNSLFGYLSLLIIVKWCTGSQADLYHVMIYMFLSPTDDLGENQLFVGQKFFQVILLLLALISVPWMLLPKPFLLKKQHQERHKSQSYSLIYNGDDPLESESRGIHKNHEEFDFSEVFVHQLIHTIEFVLGAVSNTASYLRLWALSLAHSELSSVFYDKVLLLAWGYNNTIVLIVGIIVFICATVGVLLVMESLSAFLHALRLHWVEFQNKFYEGDGYKFYPFSFTSLNDEDGL*