AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0287080

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0287080 MtrunA17_Chr2g0316881 90.744 659 56 3 1 658 1 655 0.0 990
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0287080 AT5G53930.1 68.750 48 15 0 611 658 482 529 4.90e-14 75.9

Find 195 sgRNAs with CRISPR-Local

Find 258 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACTTAAGCGATGATCTTATT+TGG 0.195541 2_3:-29063452 Msa0287080:exon
AGATAATAACATTCTTATTT+AGG 0.199384 2_3:+29062912 None:intergenic
AAGGGTCTACTGCTCTTCTT+TGG 0.202156 2_3:+29063279 None:intergenic
TGCCACTGCTATTAATATTC+TGG 0.218197 2_3:+29063808 None:intergenic
CTTGCAATTTAGAGCAAGTA+TGG 0.226345 2_3:-29063199 Msa0287080:three_prime_UTR
AAATCTCTTCCACTGTTTCT+TGG 0.243532 2_3:+29064311 None:intergenic
AATGAAATTGATTACCTTAG+AGG 0.257708 2_3:+29066182 None:intergenic
GCTACTCATATCTCTAAGTT+TGG 0.257917 2_3:+29064667 None:intergenic
CAATCACACGGTTGCAGATT+TGG 0.261543 2_3:-29063160 Msa0287080:three_prime_UTR
CTATTAGCTATATTTCATTT+AGG 0.265013 2_3:-29063364 Msa0287080:three_prime_UTR
ACTTATGAAGAGGTCATTAA+TGG 0.279828 2_3:-29063425 Msa0287080:three_prime_UTR
AAGGGTTACTTCCCTGAGTA+TGG 0.284243 2_3:-29063025 Msa0287080:three_prime_UTR
ATCATCTACAATCTCCTCTT+TGG 0.285420 2_3:+29064835 None:intergenic
CTCTTCTTTGGGTTCCCATA+TGG 0.296466 2_3:+29063291 None:intergenic
TTGCAGGTCGATTACTCTAA+TGG 0.303423 2_3:-29066247 Msa0287080:exon
TGAGAAACAGAATTGCAAAA+AGG 0.305109 2_3:-29066431 None:intergenic
TCAGCCCTCAATTCCTCTTC+TGG 0.307736 2_3:+29064734 None:intergenic
TGCAGGTCGATTACTCTAAT+GGG 0.325276 2_3:-29066246 Msa0287080:exon
GTGAAGAAGAAGAAGCGATT+AGG 0.328482 2_3:+29066316 None:intergenic
CTTTCTTTCTGTTCTTCCCC+TGG 0.336102 2_3:+29065075 None:intergenic
GATGAATTTACAGAATTGAT+TGG 0.337263 2_3:-29064866 Msa0287080:CDS
TGAAGAAGAAGAAGCGATTA+GGG 0.339416 2_3:+29066317 None:intergenic
AATTCCTGGTTATCAGTAAC+TGG 0.342960 2_3:+29064446 None:intergenic
TAATATTCTGGATTGAAGAT+TGG 0.350049 2_3:+29063820 None:intergenic
AAGCATAACAACTTGGATAA+GGG 0.352245 2_3:-29063963 Msa0287080:CDS
ATTCATTGACTACTTTGTTT+CGG 0.354273 2_3:+29064210 None:intergenic
GAAATCACGTAGGAAGAAAA+AGG 0.356643 2_3:-29065194 Msa0287080:CDS
CGAATAATGGTGCAACCATA+TGG 0.361487 2_3:-29063306 Msa0287080:three_prime_UTR
AAACCCCTGCCTTGGCTAGA+AGG 0.362464 2_3:-29063477 Msa0287080:CDS
CAGTAACTGGTTGCTTCACT+TGG 0.364914 2_3:+29064459 None:intergenic
ACTTATCTTGAACCAATTCC+TGG 0.367721 2_3:+29064432 None:intergenic
CAACGATGTGTCCATGCCTT+TGG 0.371538 2_3:+29065399 None:intergenic
AACTTGGATAAAGATTTATC+TGG 0.372457 2_3:-29064287 Msa0287080:CDS
GTGCAAAGAGTGGTAGATAT+AGG 0.372917 2_3:-29065015 Msa0287080:CDS
ACCTTCCAATGCACAGTTGC+CGG 0.374070 2_3:-29063883 Msa0287080:CDS
AAGAAACTAGTTTGCCGGTT+AGG 0.376205 2_3:-29064355 Msa0287080:CDS
TAAGCATAACAACTTGGATA+AGG 0.378692 2_3:-29063964 Msa0287080:CDS
CAACTTTCCACGAGGAAGTT+CGG 0.380786 2_3:+29064091 None:intergenic
AGGGTCTACTGCTCTTCTTT+GGG 0.383057 2_3:+29063280 None:intergenic
TGGGCTTAGAAGAGACATTC+AGG 0.383625 2_3:-29065137 Msa0287080:CDS
ACAGTGAATATGAGAGTTCC+AGG 0.383701 2_3:-29065093 Msa0287080:CDS
ATATTTCATTTAGGTTATAT+CGG 0.387238 2_3:-29063355 Msa0287080:three_prime_UTR
GATTACCTTAGAGGAATGTT+TGG 0.390546 2_3:+29066191 None:intergenic
TAATCTGAATGACGTTGATT+TGG 0.391625 2_3:-29064582 Msa0287080:CDS
GATTGGATTGGATTGGGGTT+AGG 0.394236 2_3:+29066398 None:intergenic
GAACCCGATTGGATTGGATT+GGG 0.397561 2_3:+29066392 None:intergenic
ACACTCCAAACATTCCTCTA+AGG 0.401230 2_3:-29066196 Msa0287080:intron
GATAATGTCAAAGACATTAG+AGG 0.408028 2_3:-29064032 Msa0287080:CDS
AACTTTCCACGAGGAAGTTC+GGG 0.409437 2_3:+29064092 None:intergenic
AGTTACTGATAACCAGGAAT+TGG 0.412828 2_3:-29064444 Msa0287080:CDS
ACTAAATTTCTCCTCCTAAC+CGG 0.415379 2_3:+29064341 None:intergenic
GGAAGTTCGGGCATGGTTGT+TGG 0.418097 2_3:+29064104 None:intergenic
TGTAGAAGAAACTAGTTTGC+CGG 0.420779 2_3:-29064360 Msa0287080:CDS
TGCAAAGAGTGGTAGATATA+GGG 0.420865 2_3:-29065014 Msa0287080:CDS
CTACTCATATCTCTAAGTTT+GGG 0.422245 2_3:+29064668 None:intergenic
GATGGCTTGTGCACCGGAAA+AGG 0.430440 2_3:-29064249 Msa0287080:CDS
ATTAGAGGAGTGCCTTCTGC+TGG 0.432280 2_3:-29064017 Msa0287080:CDS
GGGGATAAACCACCTATTCA+TGG 0.432834 2_3:-29063996 Msa0287080:CDS
TCATCAGTAGAGAATAATTC+AGG 0.434046 2_3:-29063741 Msa0287080:CDS
GAGAGAAGCAAGTGTTAGTT+CGG 0.437167 2_3:-29065167 Msa0287080:CDS
TTGTCCCAGCACGAACTTCA+AGG 0.441812 2_3:+29064645 None:intergenic
ACAGGCTTTGAGTAACTTCA+AGG 0.442365 2_3:-29063044 Msa0287080:three_prime_UTR
TTTGCTCAAACTGAGAGCTC+TGG 0.447594 2_3:+29063697 None:intergenic
TGTGATGAGGGGTGGTGAAT+TGG 0.449971 2_3:-29063664 Msa0287080:CDS
TCCTCGTGGAAAGTTGGTCT+TGG 0.450017 2_3:-29064084 Msa0287080:CDS
AGAACCCGATTGGATTGGAT+TGG 0.453564 2_3:+29066391 None:intergenic
TGGGACAAGTGAATCTAAAA+AGG 0.456531 2_3:-29064630 Msa0287080:CDS
GAAAGAGAACCCGATTGGAT+TGG 0.457344 2_3:+29066386 None:intergenic
AGTTGCCTTCTAGCCAAGGC+AGG 0.470893 2_3:+29063472 None:intergenic
AATCCACCTAGATTTGTTCT+CGG 0.471685 2_3:+29064919 None:intergenic
TAACCCCAATCCAATCCAAT+CGG 0.482235 2_3:-29066396 Msa0287080:five_prime_UTR
AAAGTCGTAAGAAGCGGGTT+CGG 0.482768 2_3:-29065312 Msa0287080:CDS
TGATGAATGTACTTACGAAC+AGG 0.485911 2_3:-29064960 Msa0287080:CDS
GGCAAACTAGTTTCTTCTAC+AGG 0.486591 2_3:+29064362 None:intergenic
TAATACCATGACGAGCAATC+TGG 0.486746 2_3:-29064183 Msa0287080:CDS
ATTAAAGAGTTTATCTTGCT+AGG 0.487351 2_3:+29062979 None:intergenic
CCCTAAGAAAACCCCTGCCT+TGG 0.492302 2_3:-29063485 Msa0287080:CDS
TTAAATGTAGATCCATGAAT+AGG 0.493845 2_3:+29063984 None:intergenic
ACGTGTCCGAGAACAAATCT+AGG 0.494576 2_3:-29064925 Msa0287080:CDS
AGTTATTACTGTTGCAAAAG+AGG 0.495914 2_3:-29064891 Msa0287080:CDS
GTTCGTAAGTACATTCATCA+TGG 0.496035 2_3:+29064963 None:intergenic
GTGAGGACTCTTTGTATGCC+AGG 0.498220 2_3:-29065264 Msa0287080:CDS
CAGGGGAAGAACAGAAAGAA+AGG 0.500102 2_3:-29065074 Msa0287080:CDS
TTAGAAGAGACATTCAGGTT+GGG 0.502512 2_3:-29065132 Msa0287080:CDS
GAATCATGGCAAGGATCAGA+TGG 0.504852 2_3:+29064152 None:intergenic
GAATGTTCAGGTTAGCTACA+AGG 0.509476 2_3:-29063515 Msa0287080:intron
GTGTTAGTTCGGTGAGCAGT+GGG 0.510367 2_3:-29065156 Msa0287080:CDS
AGAAGATCGAGGGGAAGAAG+TGG 0.511869 2_3:-29065040 Msa0287080:CDS
TGTCACAGCTGATAGTTGAC+AGG 0.512145 2_3:-29063062 Msa0287080:three_prime_UTR
ACTCACCGGCAACTGTGCAT+TGG 0.512234 2_3:+29063878 None:intergenic
GTTACTTCCCTGAGTATGGA+TGG 0.516001 2_3:-29063021 Msa0287080:three_prime_UTR
CGAACTTCCTCGTGGAAAGT+TGG 0.516946 2_3:-29064090 Msa0287080:CDS
CAGTGGAAGAGATTTGAACT+TGG 0.517501 2_3:-29064303 Msa0287080:CDS
GACGAGTCATGCAATGCTGC+AGG 0.517980 2_3:-29063777 Msa0287080:CDS
TGCACCAGAAGAGGAATTGA+GGG 0.520146 2_3:-29064738 Msa0287080:CDS
AGTAGCCTTGAAGTTCGTGC+TGG 0.520350 2_3:-29064650 Msa0287080:CDS
GAGGGGTGGTGAATTGGTAC+AGG 0.520556 2_3:-29063658 Msa0287080:intron
TTAGAGGAGTGCCTTCTGCT+GGG 0.521009 2_3:-29064016 Msa0287080:CDS
GTTATTACTGTTGCAAAAGA+GGG 0.523669 2_3:-29064890 Msa0287080:CDS
TATTTGGTGGTTTAGACTAA+GGG 0.525292 2_3:-29065508 Msa0287080:intron
GAATAATGGTGCAACCATAT+GGG 0.525978 2_3:-29063305 Msa0287080:three_prime_UTR
ATGCACCAGAAGAGGAATTG+AGG 0.526701 2_3:-29064739 Msa0287080:CDS
CTTAGAAGAGACATTCAGGT+TGG 0.526829 2_3:-29065133 Msa0287080:CDS
TGAGTGAGGCTGATGAAGAA+AGG 0.531590 2_3:-29063860 Msa0287080:CDS
GCGAAGAAAGAGAACCCGAT+TGG 0.533855 2_3:+29066381 None:intergenic
TGTCCTCTAGTTCTGAAGAT+AGG 0.534094 2_3:-29065378 Msa0287080:CDS
TAAGAAACATAAATCGAAGA+AGG 0.536474 2_3:-29065467 Msa0287080:CDS
TTCGTAAGTACATTCATCAT+GGG 0.537747 2_3:+29064964 None:intergenic
CTTAAGTTGCCTTCTAGCCA+AGG 0.538577 2_3:+29063468 None:intergenic
TCCACGAGGAAGTTCGGGCA+TGG 0.538827 2_3:+29064097 None:intergenic
ATGTTGACCCATCCATACTC+AGG 0.539051 2_3:+29063013 None:intergenic
GATTCAGATGGCTTGTGCAC+CGG 0.539689 2_3:-29064255 Msa0287080:CDS
TCTTCATCAGCCTCACTCAC+CGG 0.540161 2_3:+29063864 None:intergenic
TTACTGTCATTACTTCTACA+AGG 0.540510 2_3:+29064803 None:intergenic
GAAAGACAAAAGAAGATCGA+GGG 0.544223 2_3:-29065050 Msa0287080:CDS
AGAAGTGGAAGTGCAAAGAG+TGG 0.545278 2_3:-29065025 Msa0287080:CDS
TGGGATCACAAAGAGGGAGT+TGG 0.545308 2_3:-29064777 Msa0287080:CDS
AGCATAACAACTTGGATAAG+GGG 0.547479 2_3:-29063962 Msa0287080:CDS
AAACTAGTTTGCCGGTTAGG+AGG 0.547624 2_3:-29064352 Msa0287080:CDS
AACCCCAATCCAATCCAATC+GGG 0.549163 2_3:-29066395 Msa0287080:five_prime_UTR
TTGAGGGCTGAGGATGTGAC+AGG 0.554815 2_3:-29064722 Msa0287080:CDS
TACACATGATGCACCAGAAG+AGG 0.555450 2_3:-29064747 Msa0287080:CDS
CTCAAACTGAGAGCTCTGGT+TGG 0.556049 2_3:+29063701 None:intergenic
AGCGACTTTGAAGTGAATCA+TGG 0.557127 2_3:+29064138 None:intergenic
TACTGTCATTACTTCTACAA+GGG 0.558096 2_3:+29064804 None:intergenic
AGACCTATCTTCAGAACTAG+AGG 0.558097 2_3:+29065375 None:intergenic
AGAAGAGGAATTGAGGGCTG+AGG 0.559554 2_3:-29064732 Msa0287080:CDS
TACATTTAAGCATAACAACT+TGG 0.559898 2_3:-29063970 Msa0287080:CDS
CAATGCTGCAGGGATGTTGA+CGG 0.560785 2_3:-29063766 Msa0287080:CDS
GACTGTTCGATTGATAAGAT+CGG 0.561572 2_3:-29063138 Msa0287080:three_prime_UTR
GTGGTTTAGACTAAGGGAAG+TGG 0.561766 2_3:-29065502 Msa0287080:intron
GTTCCACCAGAAAACATTGA+AGG 0.564170 2_3:+29063260 None:intergenic
TACTTGCTCTAAATTGCAAG+TGG 0.567570 2_3:+29063202 None:intergenic
ATCCAGAATATTAATAGCAG+TGG 0.568393 2_3:-29063810 Msa0287080:CDS
TGTGAAAAGTCGTAAGAAGC+GGG 0.568597 2_3:-29065317 Msa0287080:CDS
AAAGAGAAACCTCACGGCGA+CGG 0.571181 2_3:+29065443 None:intergenic
AACCCGATTGGATTGGATTG+GGG 0.571616 2_3:+29066393 None:intergenic
CATGGTTGTTGGCTTCAAAG+AGG 0.572112 2_3:+29064115 None:intergenic
TTTAGGACGTATGTTAGATG+AGG 0.579452 2_3:+29062929 None:intergenic
ATTTGGTGAAACTTATGAAG+AGG 0.580581 2_3:-29063435 Msa0287080:three_prime_UTR
CTATGATGATTCCAAAGGCA+TGG 0.584367 2_3:-29065410 Msa0287080:CDS
CAGGCTTTGAGTAACTTCAA+GGG 0.591201 2_3:-29063043 Msa0287080:three_prime_UTR
TGAATCCAGATTGCTCGTCA+TGG 0.593566 2_3:+29064178 None:intergenic
TCATCATGGGGACTACTACA+AGG 0.594139 2_3:+29064977 None:intergenic
GCAGGTCGATTACTCTAATG+GGG 0.594561 2_3:-29066245 Msa0287080:exon
AATCATGGCAAGGATCAGAT+GGG 0.595474 2_3:+29064153 None:intergenic
TGGTTCTGTGAAGATTCAGA+TGG 0.595563 2_3:-29064267 Msa0287080:CDS
GTAGCCTTGAAGTTCGTGCT+GGG 0.595750 2_3:-29064649 Msa0287080:CDS
ACCGGCAACTGTGCATTGGA+AGG 0.595875 2_3:+29063882 None:intergenic
AAAGACAAAAGAAGATCGAG+GGG 0.596140 2_3:-29065049 Msa0287080:CDS
TTCCACCAGAAAACATTGAA+GGG 0.596274 2_3:+29063261 None:intergenic
GTTGCCTTCTAGCCAAGGCA+GGG 0.596364 2_3:+29063473 None:intergenic
TGCACAGTTGCCGGTGAGTG+AGG 0.599112 2_3:-29063874 Msa0287080:CDS
GCAACCAGTTACTGATAACC+AGG 0.600839 2_3:-29064450 Msa0287080:CDS
TGTTGACCCATCCATACTCA+GGG 0.603490 2_3:+29063014 None:intergenic
AATGCTGCAGGGATGTTGAC+GGG 0.604088 2_3:-29063765 Msa0287080:CDS
CGGTCGACTGGACTTGACCT+CGG 0.604399 2_3:+29064516 None:intergenic
AGTGTTAGTTCGGTGAGCAG+TGG 0.604734 2_3:-29065157 Msa0287080:CDS
TTGCCTTCTAGCCAAGGCAG+GGG 0.609078 2_3:+29063474 None:intergenic
GGTGGTTTATCCCCAGCAGA+AGG 0.609791 2_3:+29064005 None:intergenic
AATGTAGATCCATGAATAGG+TGG 0.611994 2_3:+29063987 None:intergenic
TTACTTCCCTGAGTATGGAT+GGG 0.615540 2_3:-29063020 Msa0287080:three_prime_UTR
CAGTGAATATGAGAGTTCCA+GGG 0.619436 2_3:-29065092 Msa0287080:CDS
ATGTGAAAAGTCGTAAGAAG+CGG 0.621387 2_3:-29065318 Msa0287080:CDS
AGAAGTAATGACAGTAACGA+TGG 0.622515 2_3:-29064797 Msa0287080:CDS
TAGAGGAGTGCCTTCTGCTG+GGG 0.622873 2_3:-29064015 Msa0287080:CDS
AGAAAGACAAAAGAAGATCG+AGG 0.626492 2_3:-29065051 Msa0287080:CDS
GTTGCTTATCCAAGAAACAG+TGG 0.626747 2_3:-29064320 Msa0287080:CDS
CTTTGAAGTGAATCATGGCA+AGG 0.631011 2_3:+29064143 None:intergenic
TCAGACTATGATGATTCCAA+AGG 0.631218 2_3:-29065415 Msa0287080:CDS
AGCTAGAAAGAGAAACCTCA+CGG 0.631927 2_3:+29065437 None:intergenic
GAAGTAATGACAGTAACGAT+GGG 0.633876 2_3:-29064796 Msa0287080:CDS
AGATAAGCATGATGAGACGA+AGG 0.634703 2_3:-29065218 Msa0287080:CDS
AATTCAGGCAAAGTACTAGA+CGG 0.636302 2_3:-29063726 Msa0287080:CDS
GTTCGATTGATAAGATCGGA+TGG 0.640472 2_3:-29063134 Msa0287080:three_prime_UTR
TAACGATGGGATCACAAAGA+GGG 0.650896 2_3:-29064783 Msa0287080:CDS
GATTGGAAATGAAACCAAAG+AGG 0.652440 2_3:-29064849 Msa0287080:CDS
ACCATGCCCGAACTTCCTCG+TGG 0.665314 2_3:-29064098 Msa0287080:CDS
GTAACGATGGGATCACAAAG+AGG 0.666195 2_3:-29064784 Msa0287080:CDS
GAAAACTTAAGAAAGTTCCG+AGG 0.676721 2_3:-29064533 Msa0287080:CDS
ACGAGTCATGCAATGCTGCA+GGG 0.679829 2_3:-29063776 Msa0287080:CDS
GAGCAAGTATGGATTGCATG+CGG 0.681106 2_3:-29063188 Msa0287080:three_prime_UTR
GGCTGATGAAGAAAGGAATG+CGG 0.686058 2_3:-29063853 Msa0287080:CDS
TCGTAAGTACATTCATCATG+GGG 0.695225 2_3:+29064965 None:intergenic
AGTGAATATGAGAGTTCCAG+GGG 0.696707 2_3:-29065091 Msa0287080:CDS
GAAGAAGGTCCGTCGCCGTG+AGG 0.702834 2_3:-29065452 Msa0287080:CDS
CATGCGGTCAGACAATCACA+CGG 0.711078 2_3:-29063172 Msa0287080:three_prime_UTR
ATCATGGCAAGGATCAGATG+GGG 0.712928 2_3:+29064154 None:intergenic
TGTCCGAGAACAAATCTAGG+TGG 0.715026 2_3:-29064922 Msa0287080:CDS
ACAATGACTGTGATGAGGGG+TGG 0.719420 2_3:-29063672 Msa0287080:CDS
GCCAAGACCAACTTTCCACG+AGG 0.726875 2_3:+29064083 None:intergenic
AAAACAATGACTGTGATGAG+GGG 0.727932 2_3:-29063675 Msa0287080:CDS
TCACAGAGCAGACTTACACA+AGG 0.750840 2_3:+29063230 None:intergenic
ATACAGCTCTGACAGCAGTG+AGG 0.754256 2_3:-29065281 Msa0287080:CDS
AGACGAAGGAGAAATCACGT+AGG 0.760829 2_3:-29065204 Msa0287080:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! CATATTTATTATTTTTAATC+GGG - chr2_3:29063127-29063146 Msa0287080:three_prime_UTR 10.0%
!!! TTGCTATTTATATAATTTTT+CGG - chr2_3:29063193-29063212 Msa0287080:three_prime_UTR 10.0%
!! TATTAGTAGTAATAATAAAA+AGG + chr2_3:29065710-29065729 None:intergenic 10.0%
!!! TTGAATTTTTCTATTTGATT+TGG - chr2_3:29063642-29063661 Msa0287080:intron 15.0%
!!! ATATTTCATTTAGGTTATAT+CGG - chr2_3:29065896-29065915 Msa0287080:intron 15.0%
!!! AGATAATAACATTCTTATTT+AGG + chr2_3:29066342-29066361 None:intergenic 15.0%
!!! AAAACTCTTATTTTTTTTAG+AGG - chr2_3:29066377-29066396 Msa0287080:five_prime_UTR 15.0%
!!! ATGAACTTTGAAAAAGAAAA+GGG + chr2_3:29062983-29063002 None:intergenic 20.0%
!!! AATGAACTTTGAAAAAGAAA+AGG + chr2_3:29062984-29063003 None:intergenic 20.0%
!!! GATGTTTTTTTTTTGGTTTA+AGG - chr2_3:29063355-29063374 Msa0287080:three_prime_UTR 20.0%
!!! AATATGCATTTTTTCCTATT+TGG - chr2_3:29063727-29063746 Msa0287080:CDS 20.0%
!!! GCAGAAAGTATTAAAAATAA+GGG - chr2_3:29065189-29065208 Msa0287080:CDS 20.0%
!! TAGTAATAATAAAAAGGACA+GGG + chr2_3:29065704-29065723 None:intergenic 20.0%
!! CTATTAGCTATATTTCATTT+AGG - chr2_3:29065887-29065906 Msa0287080:intron 20.0%
!!! TTTTTCAAAGTTCATTTTGC+AGG - chr2_3:29062988-29063007 Msa0287080:three_prime_UTR 25.0%
! AATGAAATTGATTACCTTAG+AGG + chr2_3:29063072-29063091 None:intergenic 25.0%
! ATATATGATAGACACAAAGT+TGG + chr2_3:29063228-29063247 None:intergenic 25.0%
!! AAAACAGATTTTTATCTCCT+GGG + chr2_3:29063306-29063325 None:intergenic 25.0%
!! AAAAACAGATTTTTATCTCC+TGG + chr2_3:29063307-29063326 None:intergenic 25.0%
!!! GGTGATTGATGTTTTTTTTT+TGG - chr2_3:29063348-29063367 Msa0287080:three_prime_UTR 25.0%
! TTATTTCCATAAATTCTCCA+GGG - chr2_3:29063490-29063509 Msa0287080:CDS 25.0%
! TAAGAAACATAAATCGAAGA+AGG - chr2_3:29063784-29063803 Msa0287080:CDS 25.0%
! GATGAATTTACAGAATTGAT+TGG - chr2_3:29064385-29064404 Msa0287080:CDS 25.0%
!! TTTCTGTTCAGAAGTTTTTA+CGG + chr2_3:29064758-29064777 None:intergenic 25.0%
! AACTTGGATAAAGATTTATC+TGG - chr2_3:29064964-29064983 Msa0287080:CDS 25.0%
!! ATTCATTGACTACTTTGTTT+CGG + chr2_3:29065044-29065063 None:intergenic 25.0%
!!! GGCAGAAAGTATTAAAAATA+AGG - chr2_3:29065188-29065207 Msa0287080:CDS 25.0%
! TTAAATGTAGATCCATGAAT+AGG + chr2_3:29065270-29065289 None:intergenic 25.0%
! TACATTTAAGCATAACAACT+TGG - chr2_3:29065281-29065300 Msa0287080:CDS 25.0%
! TAATATTCTGGATTGAAGAT+TGG + chr2_3:29065434-29065453 None:intergenic 25.0%
! GTAGTAATAATAAAAAGGAC+AGG + chr2_3:29065705-29065724 None:intergenic 25.0%
!! CTAATAATTTGTGAATGTTC+AGG - chr2_3:29065724-29065743 Msa0287080:intron 25.0%
!!! GTAGTTTTTTACACGAATAA+TGG - chr2_3:29065932-29065951 Msa0287080:intron 25.0%
!! TTAAACTCATTTTGTGATGT+TGG - chr2_3:29066161-29066180 Msa0287080:intron 25.0%
! ATTAAAGAGTTTATCTTGCT+AGG + chr2_3:29066275-29066294 None:intergenic 25.0%
!!! TTTTGGTTTAAGGATCTGTT+TGG - chr2_3:29063365-29063384 Msa0287080:three_prime_UTR 30.0%
ATTGACATAAACACTTGTGA+CGG - chr2_3:29063414-29063433 Msa0287080:three_prime_UTR 30.0%
GGAGAATTTATGGAAATAAG+CGG + chr2_3:29063489-29063508 None:intergenic 30.0%
CTTATTTCCATAAATTCTCC+AGG - chr2_3:29063489-29063508 Msa0287080:CDS 30.0%
! ATTAAGTTGTTTACCTATGC+AGG - chr2_3:29063608-29063627 Msa0287080:intron 30.0%
! TTAAGTTGTTTACCTATGCA+GGG - chr2_3:29063609-29063628 Msa0287080:intron 30.0%
!!! ATGCATTTTTTCCTATTTGG+TGG - chr2_3:29063730-29063749 Msa0287080:CDS 30.0%
! TATTTGGTGGTTTAGACTAA+GGG - chr2_3:29063743-29063762 Msa0287080:CDS 30.0%
TTCGTAAGTACATTCATCAT+GGG + chr2_3:29064290-29064309 None:intergenic 30.0%
AGTTATTACTGTTGCAAAAG+AGG - chr2_3:29064360-29064379 Msa0287080:CDS 30.0%
GTTATTACTGTTGCAAAAGA+GGG - chr2_3:29064361-29064380 Msa0287080:CDS 30.0%
TACTGTCATTACTTCTACAA+GGG + chr2_3:29064450-29064469 None:intergenic 30.0%
TTACTGTCATTACTTCTACA+AGG + chr2_3:29064451-29064470 None:intergenic 30.0%
CTACTCATATCTCTAAGTTT+GGG + chr2_3:29064586-29064605 None:intergenic 30.0%
! TAATCTGAATGACGTTGATT+TGG - chr2_3:29064669-29064688 Msa0287080:CDS 30.0%
GATAATGTCAAAGACATTAG+AGG - chr2_3:29065219-29065238 Msa0287080:CDS 30.0%
TAAGCATAACAACTTGGATA+AGG - chr2_3:29065287-29065306 Msa0287080:CDS 30.0%
AAGCATAACAACTTGGATAA+GGG - chr2_3:29065288-29065307 Msa0287080:CDS 30.0%
ATCCAGAATATTAATAGCAG+TGG - chr2_3:29065441-29065460 Msa0287080:CDS 30.0%
TCATCAGTAGAGAATAATTC+AGG - chr2_3:29065510-29065529 Msa0287080:intron 30.0%
AAAAAACAATGACTGTGATG+AGG - chr2_3:29065574-29065593 Msa0287080:intron 30.0%
AAAAACAATGACTGTGATGA+GGG - chr2_3:29065575-29065594 Msa0287080:intron 30.0%
ATAATAAAAAGGACAGGGAA+AGG + chr2_3:29065699-29065718 None:intergenic 30.0%
ACTTAAGCGATGATCTTATT+TGG - chr2_3:29065799-29065818 Msa0287080:intron 30.0%
! ATTTGGTGAAACTTATGAAG+AGG - chr2_3:29065816-29065835 Msa0287080:intron 30.0%
ACTTATGAAGAGGTCATTAA+TGG - chr2_3:29065826-29065845 Msa0287080:intron 30.0%
TGAAGAAGAAGAAGCGATTA+GGG + chr2_3:29062937-29062956 None:intergenic 35.0%
!!! GTGTTTCTTTTTGAGTGAAG+TGG + chr2_3:29063039-29063058 None:intergenic 35.0%
GATTACCTTAGAGGAATGTT+TGG + chr2_3:29063063-29063082 None:intergenic 35.0%
TTGTGAACTTAACTGACACT+GGG - chr2_3:29063264-29063283 Msa0287080:three_prime_UTR 35.0%
GTGTATAATTCATGTTTCCC+AGG - chr2_3:29063286-29063305 Msa0287080:three_prime_UTR 35.0%
GTTTAAGGATCTGTTTGGAT+TGG - chr2_3:29063370-29063389 Msa0287080:three_prime_UTR 35.0%
AATAAGCGGAACACAACTTA+TGG + chr2_3:29063475-29063494 None:intergenic 35.0%
! ACTATTTTCATAAGCTACCC+TGG + chr2_3:29063510-29063529 None:intergenic 35.0%
AATACATTAAGACCCTGCAT+AGG + chr2_3:29063624-29063643 None:intergenic 35.0%
TCAACAGACTACATATGGAA+AGG + chr2_3:29063690-29063709 None:intergenic 35.0%
TCAACTCAACAGACTACATA+TGG + chr2_3:29063695-29063714 None:intergenic 35.0%
CTTAGTCTAAACCACCAAAT+AGG + chr2_3:29063744-29063763 None:intergenic 35.0%
! CTATTTGGTGGTTTAGACTA+AGG - chr2_3:29063742-29063761 Msa0287080:CDS 35.0%
TCAGACTATGATGATTCCAA+AGG - chr2_3:29063836-29063855 Msa0287080:CDS 35.0%
GGTCTAAAAGAAAAAGAGAG+CGG - chr2_3:29063894-29063913 Msa0287080:CDS 35.0%
ATGTGAAAAGTCGTAAGAAG+CGG - chr2_3:29063933-29063952 Msa0287080:CDS 35.0%
GAAATCACGTAGGAAGAAAA+AGG - chr2_3:29064057-29064076 Msa0287080:CDS 35.0%
! TTAGAAGAGACATTCAGGTT+GGG - chr2_3:29064119-29064138 Msa0287080:CDS 35.0%
AGAAAGACAAAAGAAGATCG+AGG - chr2_3:29064200-29064219 Msa0287080:CDS 35.0%
GAAAGACAAAAGAAGATCGA+GGG - chr2_3:29064201-29064220 Msa0287080:CDS 35.0%
AAAGACAAAAGAAGATCGAG+GGG - chr2_3:29064202-29064221 Msa0287080:CDS 35.0%
TGCAAAGAGTGGTAGATATA+GGG - chr2_3:29064237-29064256 Msa0287080:CDS 35.0%
TCGTAAGTACATTCATCATG+GGG + chr2_3:29064289-29064308 None:intergenic 35.0%
GTTCGTAAGTACATTCATCA+TGG + chr2_3:29064291-29064310 None:intergenic 35.0%
TGATGAATGTACTTACGAAC+AGG - chr2_3:29064291-29064310 Msa0287080:CDS 35.0%
! AATCCACCTAGATTTGTTCT+CGG + chr2_3:29064335-29064354 None:intergenic 35.0%
GATTGGAAATGAAACCAAAG+AGG - chr2_3:29064402-29064421 Msa0287080:CDS 35.0%
ATCATCTACAATCTCCTCTT+TGG + chr2_3:29064419-29064438 None:intergenic 35.0%
AGAAGTAATGACAGTAACGA+TGG - chr2_3:29064454-29064473 Msa0287080:CDS 35.0%
GAAGTAATGACAGTAACGAT+GGG - chr2_3:29064455-29064474 Msa0287080:CDS 35.0%
GCTACTCATATCTCTAAGTT+TGG + chr2_3:29064587-29064606 None:intergenic 35.0%
TGGGACAAGTGAATCTAAAA+AGG - chr2_3:29064621-29064640 Msa0287080:CDS 35.0%
GACAAGTGAATCTAAAAAGG+AGG - chr2_3:29064624-29064643 Msa0287080:CDS 35.0%
GAAAACTTAAGAAAGTTCCG+AGG - chr2_3:29064718-29064737 Msa0287080:CDS 35.0%
AATTCCTGGTTATCAGTAAC+TGG + chr2_3:29064808-29064827 None:intergenic 35.0%
AGTTACTGATAACCAGGAAT+TGG - chr2_3:29064807-29064826 Msa0287080:CDS 35.0%
ACTTATCTTGAACCAATTCC+TGG + chr2_3:29064822-29064841 None:intergenic 35.0%
! TGTAGAAGAAACTAGTTTGC+CGG - chr2_3:29064891-29064910 Msa0287080:CDS 35.0%
ACTAAATTTCTCCTCCTAAC+CGG + chr2_3:29064913-29064932 None:intergenic 35.0%
! AAATCTCTTCCACTGTTTCT+TGG + chr2_3:29064943-29064962 None:intergenic 35.0%
AATGTAGATCCATGAATAGG+TGG + chr2_3:29065267-29065286 None:intergenic 35.0%
AGCATAACAACTTGGATAAG+GGG - chr2_3:29065289-29065308 Msa0287080:CDS 35.0%
TGCCACTGCTATTAATATTC+TGG + chr2_3:29065446-29065465 None:intergenic 35.0%
! AATTCAGGCAAAGTACTAGA+CGG - chr2_3:29065525-29065544 Msa0287080:intron 35.0%
AAAACAATGACTGTGATGAG+GGG - chr2_3:29065576-29065595 Msa0287080:intron 35.0%
GAATAATGGTGCAACCATAT+GGG - chr2_3:29065946-29065965 Msa0287080:intron 35.0%
TTCCACCAGAAAACATTGAA+GGG + chr2_3:29065993-29066012 None:intergenic 35.0%
! TACTTGCTCTAAATTGCAAG+TGG + chr2_3:29066052-29066071 None:intergenic 35.0%
! CTTGCAATTTAGAGCAAGTA+TGG - chr2_3:29066052-29066071 Msa0287080:intron 35.0%
GACTGTTCGATTGATAAGAT+CGG - chr2_3:29066113-29066132 Msa0287080:intron 35.0%
! TTTAGGACGTATGTTAGATG+AGG + chr2_3:29066325-29066344 None:intergenic 35.0%
TAACCCCAATCCAATCCAAT+CGG - chr2_3:29062855-29062874 Msa0287080:three_prime_UTR 40.0%
GTGAAGAAGAAGAAGCGATT+AGG + chr2_3:29062938-29062957 None:intergenic 40.0%
TTGCAGGTCGATTACTCTAA+TGG - chr2_3:29063004-29063023 Msa0287080:three_prime_UTR 40.0%
TGCAGGTCGATTACTCTAAT+GGG - chr2_3:29063005-29063024 Msa0287080:three_prime_UTR 40.0%
ACACTCCAAACATTCCTCTA+AGG - chr2_3:29063055-29063074 Msa0287080:three_prime_UTR 40.0%
GTTGTGAACTTAACTGACAC+TGG - chr2_3:29063263-29063282 Msa0287080:three_prime_UTR 40.0%
!! TTTTGTCCCTTTGTTGTGTG+AGG - chr2_3:29063327-29063346 Msa0287080:three_prime_UTR 40.0%
CAATCACCTCACACAACAAA+GGG + chr2_3:29063336-29063355 None:intergenic 40.0%
TCAATCACCTCACACAACAA+AGG + chr2_3:29063337-29063356 None:intergenic 40.0%
AAGCTACCCTGGAGAATTTA+TGG + chr2_3:29063499-29063518 None:intergenic 40.0%
AGCTAGAAAGAGAAACCTCA+CGG + chr2_3:29063817-29063836 None:intergenic 40.0%
CTATGATGATTCCAAAGGCA+TGG - chr2_3:29063841-29063860 Msa0287080:CDS 40.0%
!! TGTCCTCTAGTTCTGAAGAT+AGG - chr2_3:29063873-29063892 Msa0287080:CDS 40.0%
AGACCTATCTTCAGAACTAG+AGG + chr2_3:29063879-29063898 None:intergenic 40.0%
TGTGAAAAGTCGTAAGAAGC+GGG - chr2_3:29063934-29063953 Msa0287080:CDS 40.0%
GTATGCCAGGAAGAGAAAAA+AGG - chr2_3:29064000-29064019 Msa0287080:CDS 40.0%
!!! CTTCACCTTTTTTCTCTTCC+TGG + chr2_3:29064008-29064027 None:intergenic 40.0%
GGAAGAGAAAAAAGGTGAAG+AGG - chr2_3:29064008-29064027 Msa0287080:CDS 40.0%
AGATAAGCATGATGAGACGA+AGG - chr2_3:29064033-29064052 Msa0287080:CDS 40.0%
GAGAGAAGCAAGTGTTAGTT+CGG - chr2_3:29064084-29064103 Msa0287080:CDS 40.0%
CTTAGAAGAGACATTCAGGT+TGG - chr2_3:29064118-29064137 Msa0287080:CDS 40.0%
ACAGTGAATATGAGAGTTCC+AGG - chr2_3:29064158-29064177 Msa0287080:CDS 40.0%
CAGTGAATATGAGAGTTCCA+GGG - chr2_3:29064159-29064178 Msa0287080:CDS 40.0%
AGTGAATATGAGAGTTCCAG+GGG - chr2_3:29064160-29064179 Msa0287080:CDS 40.0%
GTGCAAAGAGTGGTAGATAT+AGG - chr2_3:29064236-29064255 Msa0287080:CDS 40.0%
TAACGATGGGATCACAAAGA+GGG - chr2_3:29064468-29064487 Msa0287080:CDS 40.0%
! GGCAAACTAGTTTCTTCTAC+AGG + chr2_3:29064892-29064911 None:intergenic 40.0%
! AAGAAACTAGTTTGCCGGTT+AGG - chr2_3:29064896-29064915 Msa0287080:CDS 40.0%
GTTGCTTATCCAAGAAACAG+TGG - chr2_3:29064931-29064950 Msa0287080:CDS 40.0%
CAGTGGAAGAGATTTGAACT+TGG - chr2_3:29064948-29064967 Msa0287080:CDS 40.0%
! TGGTTCTGTGAAGATTCAGA+TGG - chr2_3:29064984-29065003 Msa0287080:CDS 40.0%
! TCTGCATCAGTAACCTTTTC+CGG + chr2_3:29065018-29065037 None:intergenic 40.0%
TAATACCATGACGAGCAATC+TGG - chr2_3:29065068-29065087 Msa0287080:CDS 40.0%
AATCATGGCAAGGATCAGAT+GGG + chr2_3:29065101-29065120 None:intergenic 40.0%
!! CTTTGAAGTGAATCATGGCA+AGG + chr2_3:29065111-29065130 None:intergenic 40.0%
!! AGCGACTTTGAAGTGAATCA+TGG + chr2_3:29065116-29065135 None:intergenic 40.0%
! GGGTCACGTACAGTATTTTA+TGG + chr2_3:29065673-29065692 None:intergenic 40.0%
AAAAGGACAGGGAAAGGAAT+GGG + chr2_3:29065693-29065712 None:intergenic 40.0%
AAAAAGGACAGGGAAAGGAA+TGG + chr2_3:29065694-29065713 None:intergenic 40.0%
! GAATGTTCAGGTTAGCTACA+AGG - chr2_3:29065736-29065755 Msa0287080:intron 40.0%
CGAATAATGGTGCAACCATA+TGG - chr2_3:29065945-29065964 Msa0287080:intron 40.0%
! GTAGACCCTTCAATGTTTTC+TGG - chr2_3:29065985-29066004 Msa0287080:intron 40.0%
GTTCCACCAGAAAACATTGA+AGG + chr2_3:29065994-29066013 None:intergenic 40.0%
GTTCGATTGATAAGATCGGA+TGG - chr2_3:29066117-29066136 Msa0287080:intron 40.0%
!! ACAGGCTTTGAGTAACTTCA+AGG - chr2_3:29066207-29066226 Msa0287080:CDS 40.0%
!! CAGGCTTTGAGTAACTTCAA+GGG - chr2_3:29066208-29066227 Msa0287080:CDS 40.0%
TTACTTCCCTGAGTATGGAT+GGG - chr2_3:29066231-29066250 Msa0287080:CDS 40.0%
! GATTGGATTGGATTGGGGTT+AGG + chr2_3:29062856-29062875 None:intergenic 45.0%
AACCCCAATCCAATCCAATC+GGG - chr2_3:29062856-29062875 Msa0287080:three_prime_UTR 45.0%
! AACCCGATTGGATTGGATTG+GGG + chr2_3:29062861-29062880 None:intergenic 45.0%
! GAACCCGATTGGATTGGATT+GGG + chr2_3:29062862-29062881 None:intergenic 45.0%
! AGAACCCGATTGGATTGGAT+TGG + chr2_3:29062863-29062882 None:intergenic 45.0%
GAAAGAGAACCCGATTGGAT+TGG + chr2_3:29062868-29062887 None:intergenic 45.0%
GCAGGTCGATTACTCTAATG+GGG - chr2_3:29063006-29063025 Msa0287080:three_prime_UTR 45.0%
GTGGTTTAGACTAAGGGAAG+TGG - chr2_3:29063749-29063768 Msa0287080:CDS 45.0%
! AAAGTCGTAAGAAGCGGGTT+CGG - chr2_3:29063939-29063958 Msa0287080:CDS 45.0%
AGACGAAGGAGAAATCACGT+AGG - chr2_3:29064047-29064066 Msa0287080:CDS 45.0%
TGGGCTTAGAAGAGACATTC+AGG - chr2_3:29064114-29064133 Msa0287080:CDS 45.0%
CTTTCTTTCTGTTCTTCCCC+TGG + chr2_3:29064179-29064198 None:intergenic 45.0%
CAGGGGAAGAACAGAAAGAA+AGG - chr2_3:29064177-29064196 Msa0287080:CDS 45.0%
! AGAAGTGGAAGTGCAAAGAG+TGG - chr2_3:29064226-29064245 Msa0287080:CDS 45.0%
TCATCATGGGGACTACTACA+AGG + chr2_3:29064277-29064296 None:intergenic 45.0%
ACGTGTCCGAGAACAAATCT+AGG - chr2_3:29064326-29064345 Msa0287080:CDS 45.0%
TGTCCGAGAACAAATCTAGG+TGG - chr2_3:29064329-29064348 Msa0287080:CDS 45.0%
GTAACGATGGGATCACAAAG+AGG - chr2_3:29064467-29064486 Msa0287080:CDS 45.0%
TACACATGATGCACCAGAAG+AGG - chr2_3:29064504-29064523 Msa0287080:CDS 45.0%
ATGCACCAGAAGAGGAATTG+AGG - chr2_3:29064512-29064531 Msa0287080:CDS 45.0%
TGCACCAGAAGAGGAATTGA+GGG - chr2_3:29064513-29064532 Msa0287080:CDS 45.0%
! CAGAAGTTTTTACGGTCGAC+TGG + chr2_3:29064750-29064769 None:intergenic 45.0%
CAGTAACTGGTTGCTTCACT+TGG + chr2_3:29064795-29064814 None:intergenic 45.0%
GCAACCAGTTACTGATAACC+AGG - chr2_3:29064801-29064820 Msa0287080:CDS 45.0%
! AAACTAGTTTGCCGGTTAGG+AGG - chr2_3:29064899-29064918 Msa0287080:CDS 45.0%
TGAATCCAGATTGCTCGTCA+TGG + chr2_3:29065076-29065095 None:intergenic 45.0%
ATCATGGCAAGGATCAGATG+GGG + chr2_3:29065100-29065119 None:intergenic 45.0%
GAATCATGGCAAGGATCAGA+TGG + chr2_3:29065102-29065121 None:intergenic 45.0%
!! CATGGTTGTTGGCTTCAAAG+AGG + chr2_3:29065139-29065158 None:intergenic 45.0%
AACTTTCCACGAGGAAGTTC+GGG + chr2_3:29065162-29065181 None:intergenic 45.0%
CAACTTTCCACGAGGAAGTT+CGG + chr2_3:29065163-29065182 None:intergenic 45.0%
GGGGATAAACCACCTATTCA+TGG - chr2_3:29065255-29065274 Msa0287080:CDS 45.0%
TGAGTGAGGCTGATGAAGAA+AGG - chr2_3:29065391-29065410 Msa0287080:CDS 45.0%
GGCTGATGAAGAAAGGAATG+CGG - chr2_3:29065398-29065417 Msa0287080:CDS 45.0%
TTTGCTCAAACTGAGAGCTC+TGG + chr2_3:29065557-29065576 None:intergenic 45.0%
! CTTAAGTTGCCTTCTAGCCA+AGG + chr2_3:29065786-29065805 None:intergenic 45.0%
! CTCTTCTTTGGGTTCCCATA+TGG + chr2_3:29065963-29065982 None:intergenic 45.0%
AGGGTCTACTGCTCTTCTTT+GGG + chr2_3:29065974-29065993 None:intergenic 45.0%
AAGGGTCTACTGCTCTTCTT+TGG + chr2_3:29065975-29065994 None:intergenic 45.0%
! GACCCTTCAATGTTTTCTGG+TGG - chr2_3:29065988-29066007 Msa0287080:intron 45.0%
TCACAGAGCAGACTTACACA+AGG + chr2_3:29066024-29066043 None:intergenic 45.0%
! GAGCAAGTATGGATTGCATG+CGG - chr2_3:29066063-29066082 Msa0287080:intron 45.0%
CAATCACACGGTTGCAGATT+TGG - chr2_3:29066091-29066110 Msa0287080:intron 45.0%
TGTCACAGCTGATAGTTGAC+AGG - chr2_3:29066189-29066208 Msa0287080:intron 45.0%
AAGGGTTACTTCCCTGAGTA+TGG - chr2_3:29066226-29066245 Msa0287080:CDS 45.0%
GTTACTTCCCTGAGTATGGA+TGG - chr2_3:29066230-29066249 Msa0287080:CDS 45.0%
TGTTGACCCATCCATACTCA+GGG + chr2_3:29066240-29066259 None:intergenic 45.0%
ATGTTGACCCATCCATACTC+AGG + chr2_3:29066241-29066260 None:intergenic 45.0%
!!! TCATATTTATTATTTTTAAT+CGG - chr2_3:29063126-29063145 Msa0287080:three_prime_UTR 5.0%
GCGAAGAAAGAGAACCCGAT+TGG + chr2_3:29062873-29062892 None:intergenic 50.0%
AAAGAGAAACCTCACGGCGA+CGG + chr2_3:29063811-29063830 None:intergenic 50.0%
CAACGATGTGTCCATGCCTT+TGG + chr2_3:29063855-29063874 None:intergenic 50.0%
! ATACAGCTCTGACAGCAGTG+AGG - chr2_3:29063970-29063989 Msa0287080:CDS 50.0%
GTGAGGACTCTTTGTATGCC+AGG - chr2_3:29063987-29064006 Msa0287080:CDS 50.0%
! AGTGTTAGTTCGGTGAGCAG+TGG - chr2_3:29064094-29064113 Msa0287080:CDS 50.0%
! GTGTTAGTTCGGTGAGCAGT+GGG - chr2_3:29064095-29064114 Msa0287080:CDS 50.0%
AGAAGATCGAGGGGAAGAAG+TGG - chr2_3:29064211-29064230 Msa0287080:CDS 50.0%
TGGGATCACAAAGAGGGAGT+TGG - chr2_3:29064474-29064493 Msa0287080:CDS 50.0%
TCAGCCCTCAATTCCTCTTC+TGG + chr2_3:29064520-29064539 None:intergenic 50.0%
AGAAGAGGAATTGAGGGCTG+AGG - chr2_3:29064519-29064538 Msa0287080:CDS 50.0%
! AGTAGCCTTGAAGTTCGTGC+TGG - chr2_3:29064601-29064620 Msa0287080:CDS 50.0%
! GTAGCCTTGAAGTTCGTGCT+GGG - chr2_3:29064602-29064621 Msa0287080:CDS 50.0%
TTGTCCCAGCACGAACTTCA+AGG + chr2_3:29064609-29064628 None:intergenic 50.0%
! GATTCAGATGGCTTGTGCAC+CGG - chr2_3:29064996-29065015 Msa0287080:CDS 50.0%
CGAACTTCCTCGTGGAAAGT+TGG - chr2_3:29065161-29065180 Msa0287080:CDS 50.0%
! TCCTCGTGGAAAGTTGGTCT+TGG - chr2_3:29065167-29065186 Msa0287080:CDS 50.0%
!! ATTAGAGGAGTGCCTTCTGC+TGG - chr2_3:29065234-29065253 Msa0287080:CDS 50.0%
!! TTAGAGGAGTGCCTTCTGCT+GGG - chr2_3:29065235-29065254 Msa0287080:CDS 50.0%
ACCTTCCAATGCACAGTTGC+CGG - chr2_3:29065368-29065387 Msa0287080:CDS 50.0%
TCTTCATCAGCCTCACTCAC+CGG + chr2_3:29065390-29065409 None:intergenic 50.0%
ACGAGTCATGCAATGCTGCA+GGG - chr2_3:29065475-29065494 Msa0287080:CDS 50.0%
CAATGCTGCAGGGATGTTGA+CGG - chr2_3:29065485-29065504 Msa0287080:CDS 50.0%
AATGCTGCAGGGATGTTGAC+GGG - chr2_3:29065486-29065505 Msa0287080:CDS 50.0%
! CTCAAACTGAGAGCTCTGGT+TGG + chr2_3:29065553-29065572 None:intergenic 50.0%
ACAATGACTGTGATGAGGGG+TGG - chr2_3:29065579-29065598 Msa0287080:intron 50.0%
TGTGATGAGGGGTGGTGAAT+TGG - chr2_3:29065587-29065606 Msa0287080:intron 50.0%
! CCAAGGCAGGGGTTTTCTTA+GGG + chr2_3:29065769-29065788 None:intergenic 50.0%
CATGCGGTCAGACAATCACA+CGG - chr2_3:29066079-29066098 Msa0287080:intron 50.0%
TTGAGGGCTGAGGATGTGAC+AGG - chr2_3:29064529-29064548 Msa0287080:CDS 55.0%
! GATGGCTTGTGCACCGGAAA+AGG - chr2_3:29065002-29065021 Msa0287080:CDS 55.0%
GGAAGTTCGGGCATGGTTGT+TGG + chr2_3:29065150-29065169 None:intergenic 55.0%
GCCAAGACCAACTTTCCACG+AGG + chr2_3:29065171-29065190 None:intergenic 55.0%
!! TAGAGGAGTGCCTTCTGCTG+GGG - chr2_3:29065236-29065255 Msa0287080:CDS 55.0%
GGTGGTTTATCCCCAGCAGA+AGG + chr2_3:29065249-29065268 None:intergenic 55.0%
ACCGGCAACTGTGCATTGGA+AGG + chr2_3:29065372-29065391 None:intergenic 55.0%
ACTCACCGGCAACTGTGCAT+TGG + chr2_3:29065376-29065395 None:intergenic 55.0%
GACGAGTCATGCAATGCTGC+AGG - chr2_3:29065474-29065493 Msa0287080:CDS 55.0%
GAGGGGTGGTGAATTGGTAC+AGG - chr2_3:29065593-29065612 Msa0287080:intron 55.0%
CCCTAAGAAAACCCCTGCCT+TGG - chr2_3:29065766-29065785 Msa0287080:intron 55.0%
! GCCAAGGCAGGGGTTTTCTT+AGG + chr2_3:29065770-29065789 None:intergenic 55.0%
AAACCCCTGCCTTGGCTAGA+AGG - chr2_3:29065774-29065793 Msa0287080:intron 55.0%
TTGCCTTCTAGCCAAGGCAG+GGG + chr2_3:29065780-29065799 None:intergenic 55.0%
GTTGCCTTCTAGCCAAGGCA+GGG + chr2_3:29065781-29065800 None:intergenic 55.0%
AGTTGCCTTCTAGCCAAGGC+AGG + chr2_3:29065782-29065801 None:intergenic 55.0%
CGGTCGACTGGACTTGACCT+CGG + chr2_3:29064738-29064757 None:intergenic 60.0%
ACCATGCCCGAACTTCCTCG+TGG - chr2_3:29065153-29065172 Msa0287080:CDS 60.0%
TCCACGAGGAAGTTCGGGCA+TGG + chr2_3:29065157-29065176 None:intergenic 60.0%
TGCACAGTTGCCGGTGAGTG+AGG - chr2_3:29065377-29065396 Msa0287080:CDS 60.0%
GAAGAAGGTCCGTCGCCGTG+AGG - chr2_3:29063799-29063818 Msa0287080:CDS 65.0%
Chromosome Type Strat End Strand Name
chr2_3 gene 29062835 29066438 29062835 ID=Msa0287080;Name=Msa0287080
chr2_3 mRNA 29062835 29066438 29062835 ID=Msa0287080-mRNA-1;Parent=Msa0287080;Name=Msa0287080-mRNA-1;_AED=0.18;_eAED=0.18;_QI=188|1|1|1|1|1|3|627|658
chr2_3 exon 29062835 29063527 29062835 ID=Msa0287080-mRNA-1:exon:10222;Parent=Msa0287080-mRNA-1
chr2_3 exon 29063659 29065515 29063659 ID=Msa0287080-mRNA-1:exon:10221;Parent=Msa0287080-mRNA-1
chr2_3 exon 29066197 29066438 29066197 ID=Msa0287080-mRNA-1:exon:10220;Parent=Msa0287080-mRNA-1
chr2_3 five_prime_UTR 29066251 29066438 29066251 ID=Msa0287080-mRNA-1:five_prime_utr;Parent=Msa0287080-mRNA-1
chr2_3 CDS 29066197 29066250 29066197 ID=Msa0287080-mRNA-1:cds;Parent=Msa0287080-mRNA-1
chr2_3 CDS 29063659 29065515 29063659 ID=Msa0287080-mRNA-1:cds;Parent=Msa0287080-mRNA-1
chr2_3 CDS 29063462 29063527 29063462 ID=Msa0287080-mRNA-1:cds;Parent=Msa0287080-mRNA-1
chr2_3 three_prime_UTR 29062835 29063461 29062835 ID=Msa0287080-mRNA-1:three_prime_utr;Parent=Msa0287080-mRNA-1
Gene Sequence

>Msa0287080

ATGGGGAAATCATCCACTTCACTCAAAAAGAAACACTCCAAACATTCCTCTAAGACTAAGGGAAGTGGCAGAAGTAAGAGTAAGAAACATAAATCGAAGAAGGTCCGTCGCCGTGAGGTTTCTCTTTCTAGCTCAGACTATGATGATTCCAAAGGCATGGACACATCGTTGTCCTCTAGTTCTGAAGATAGGTCTAAAAGAAAAAGAGAGCGGTCTCGCACAAGAAAAGATGTGAAAAGTCGTAAGAAGCGGGTTCGGAGACGTTCATACAGCTCTGACAGCAGTGAGGACTCTTTGTATGCCAGGAAGAGAAAAAAGGTGAAGAGGAAAGATAAGCATGATGAGACGAAGGAGAAATCACGTAGGAAGAAAAAGGTTAAGAGAGAAGCAAGTGTTAGTTCGGTGAGCAGTGGGCTTAGAAGAGACATTCAGGTTGGGATTGACAGCAATGACGACAGTGAATATGAGAGTTCCAGGGGAAGAACAGAAAGAAAGGAGAAAGACAAAAGAAGATCGAGGGGAAGAAGTGGAAGTGCAAAGAGTGGTAGATATAGGGCTCGAAGTTGTTCTCCTTGTAGTAGTCCCCATGATGAATGTACTTACGAACAGGCTGAAAACAAATACGTGTCCGAGAACAAATCTAGGTGGATTCGATCAGTTATTACTGTTGCAAAAGAGGGTGATGAATTTACAGAATTGATTGGAAATGAAACCAAAGAGGAGATTGTAGATGATCTTGATTACCCTTGTAGAAGTAATGACAGTAACGATGGGATCACAAAGAGGGAGTTGGATCATCATACACATGATGCACCAGAAGAGGAATTGAGGGCTGAGGATGTGACAGGAATTATGAATACTGATGTTAACTTCACAGAGCCCAAACTTAGAGATATGAGTAGCCTTGAAGTTCGTGCTGGGACAAGTGAATCTAAAAAGGAGGAAACAAATGATGTTTCTGCTGCTAATCTGAATGACGTTGATTTGGAGTCAATTCTAAGACAAAGAGCGTTAGAAAACTTAAGAAAGTTCCGAGGTCAAGTCCAGTCGACCGTAAAAACTTCTGAACAGAAAAATAGAATTGTCAGCCAAGTGAAGCAACCAGTTACTGATAACCAGGAATTGGTTCAAGATAAGTCTAATATCAGTAACGTTGCTATAGTGACAAAACTTGATAAGCAAACACCTGTAGAAGAAACTAGTTTGCCGGTTAGGAGGAGAAATTTAGTTGCTTATCCAAGAAACAGTGGAAGAGATTTGAACTTGGATAAAGATTTATCTGGTTCTGTGAAGATTCAGATGGCTTGTGCACCGGAAAAGGTTACTGATGCAGACAGCCGAAACAAAGTAGTCAATGAATCAGCTAATACCATGACGAGCAATCTGGATTCAACCCCATCTGATCCTTGCCATGATTCACTTCAAAGTCGCTCCTCTTTGAAGCCAACAACCATGCCCGAACTTCCTCGTGGAAAGTTGGTCTTGGCAGAAAGTATTAAAAATAAGGGTAGCAATGATAATGTCAAAGACATTAGAGGAGTGCCTTCTGCTGGGGATAAACCACCTATTCATGGATCTACATTTAAGCATAACAACTTGGATAAGGGGCATGATGATGCAAGTGATCACTCTCAGTTTAAATCAAAGCAATCTGATTCACATGAACCTTCCAATGCACAGTTGCCGGTGAGTGAGGCTGATGAAGAAAGGAATGCGGCTAAGATAGTCCAATCTTCAATCCAGAATATTAATAGCAGTGGCAGAGATGTTGACGAGTCATGCAATGCTGCAGGGATGTTGACGGGTTCATCAGTAGAGAATAATTCAGGCAAAGTACTAGACGGATCCAACCAGAGCTCTCAGTTTGAGCAAAAAACAATGACTGTGATGAGGGGTGGTGAATTGGTACAGGTTAGCTACAAGGTCTATATCCCTAAGAAAACCCCTGCCTTGGCTAGAAGGCAACTTAAGCGATGA
Protein sequence

>Msa0287080

MGKSSTSLKKKHSKHSSKTKGSGRSKSKKHKSKKVRRREVSLSSSDYDDSKGMDTSLSSSSEDRSKRKRERSRTRKDVKSRKKRVRRRSYSSDSSEDSLYARKRKKVKRKDKHDETKEKSRRKKKVKREASVSSVSSGLRRDIQVGIDSNDDSEYESSRGRTERKEKDKRRSRGRSGSAKSGRYRARSCSPCSSPHDECTYEQAENKYVSENKSRWIRSVITVAKEGDEFTELIGNETKEEIVDDLDYPCRSNDSNDGITKRELDHHTHDAPEEELRAEDVTGIMNTDVNFTEPKLRDMSSLEVRAGTSESKKEETNDVSAANLNDVDLESILRQRALENLRKFRGQVQSTVKTSEQKNRIVSQVKQPVTDNQELVQDKSNISNVAIVTKLDKQTPVEETSLPVRRRNLVAYPRNSGRDLNLDKDLSGSVKIQMACAPEKVTDADSRNKVVNESANTMTSNLDSTPSDPCHDSLQSRSSLKPTTMPELPRGKLVLAESIKNKGSNDNVKDIRGVPSAGDKPPIHGSTFKHNNLDKGHDDASDHSQFKSKQSDSHEPSNAQLPVSEADEERNAAKIVQSSIQNINSSGRDVDESCNAAGMLTGSSVENNSGKVLDGSNQSSQFEQKTMTVMRGGELVQVSYKVYIPKKTPALARRQLKR*