AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1300350


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1300350 MtrunA17_Chr4g0061921 99.627 268 1 0 1 268 75 342 0.0 556
Msa1300350 MtrunA17_Chr3g0087171 29.644 253 155 7 1 252 56 286 2.47e-24 102
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1300350 AT5G08160.1 86.617 269 35 1 1 268 79 347 2.88e-176 489
Msa1300350 AT5G08160.2 86.617 269 35 1 1 268 43 311 6.81e-176 487
Msa1300350 AT2G32850.1 30.566 265 160 9 1 263 56 298 9.26e-26 106
Msa1300350 AT2G32850.2 30.566 265 160 9 1 263 56 298 1.20e-25 106
Msa1300350 AT1G12680.1 27.126 247 142 11 13 258 143 352 3.17e-11 63.5

Find 98 sgRNAs with CRISPR-Local

Find 216 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTCTTGGCTTTCATTGTTT+TGG 0.155584 8_3:+61872649 None:intergenic
CTGGCCATACTGATGGATTT+TGG 0.264286 8_3:-61872117 Msa1300350:CDS
GGTGGAATAGTGTTCCTTCT+TGG 0.288284 8_3:+61872634 None:intergenic
CTTGTTATTTCCAGTTCATT+TGG 0.299548 8_3:-61872693 Msa1300350:CDS
CAGATGTTCTTCAAATATTT+CGG 0.304963 8_3:-61872610 Msa1300350:CDS
GAGCTAATCTTCTTCCTTGC+GGG 0.327554 8_3:+61872084 None:intergenic
GTCTCTTGTAATTTATGAAA+TGG 0.332989 8_3:-61870086 Msa1300350:three_prime_UTR
TCAAGAAGTGGGAGGAGATT+GGG 0.348271 8_3:+61872877 None:intergenic
CATTTACAATAGCCAGTTGC+AGG 0.356717 8_3:+61870484 None:intergenic
CAACTGGAGTGCCTCTGATC+TGG 0.364109 8_3:+61872062 None:intergenic
ATCAGAGGCACTCCAGTTGC+AGG 0.377493 8_3:-61872058 Msa1300350:intron
TGGATCTTATGCTATGAAAA+AGG 0.382382 8_3:-61872971 Msa1300350:exon
CTTGGGCAATCCCACAGCTC+AGG 0.394165 8_3:+61871557 None:intergenic
GGATAATGATATCGTCTATC+CGG 0.398152 8_3:+61870364 None:intergenic
GAAATAACAAGTACGCTTCA+TGG 0.400033 8_3:+61872705 None:intergenic
ACGAACTGATGAAGAGCTTC+TGG 0.403819 8_3:+61870423 None:intergenic
ACGAGCAGCTGGAGTTGGTC+AGG 0.404228 8_3:-61872933 Msa1300350:CDS
TCCGGGGCCTCATAGCAGCT+TGG 0.408265 8_3:+61870382 None:intergenic
ATCAAGAAGTGGGAGGAGAT+TGG 0.424760 8_3:+61872876 None:intergenic
TTGACATCATTGTGAGCATA+AGG 0.430332 8_3:+61872183 None:intergenic
TCATGCAATCATATCTGTTA+AGG 0.433133 8_3:-61872854 Msa1300350:intron
TTGGTGTTAGTCTAGATAGT+AGG 0.440649 8_3:-61870154 Msa1300350:three_prime_UTR
CGTCTATATCAGCATGGCTT+GGG 0.443772 8_3:+61871540 None:intergenic
AATCCCACAGCTCAGGGGCT+CGG 0.444654 8_3:+61871564 None:intergenic
AAGAATGAATCACCTGCAAC+TGG 0.444808 8_3:+61872046 None:intergenic
GTCTGGTGGAAGCCTGCAAC+TGG 0.446847 8_3:-61870496 Msa1300350:CDS
TGAGGAAGACACAGGGAGAT+TGG 0.447172 8_3:+61870063 None:intergenic
TTGTAAATGCTCAGGTCAAA+TGG 0.451429 8_3:-61870470 Msa1300350:CDS
TTGGGCAATCCCACAGCTCA+GGG 0.451475 8_3:+61871558 None:intergenic
TTATTTCCAGTTCATTTGGA+TGG 0.458073 8_3:-61872689 Msa1300350:CDS
CAGAAAAGGACAACCACCAC+TGG 0.459960 8_3:-61872136 Msa1300350:CDS
GAATATGCACTTGGAGAGTC+TGG 0.460612 8_3:-61870513 Msa1300350:CDS
AGGACTGACGTTTGGTCACT+AGG 0.464707 8_3:-61871515 Msa1300350:CDS
CTTTCCGAGCCCCTGAGCTG+TGG 0.468523 8_3:-61871568 Msa1300350:CDS
AATGTTCCATCCAAATGAAC+TGG 0.469154 8_3:+61872683 None:intergenic
CATTCAGAACAACGAGCAGC+TGG 0.475734 8_3:-61872944 Msa1300350:CDS
ACTGCCAAAATCCATCAGTA+TGG 0.479140 8_3:+61872113 None:intergenic
CAAGAAGTGGGAGGAGATTG+GGG 0.480551 8_3:+61872878 None:intergenic
TGGTGTTAGTCTAGATAGTA+GGG 0.480943 8_3:-61870153 Msa1300350:three_prime_UTR
CCCAAGCTGCTATGAGGCCC+CGG 0.483526 8_3:-61870383 Msa1300350:CDS
GCTCAGGTCAAATGGCCAGC+TGG 0.486173 8_3:-61870462 Msa1300350:CDS
TCGTCTATATCAGCATGGCT+TGG 0.489078 8_3:+61871539 None:intergenic
TTTCCGAGCCCCTGAGCTGT+GGG 0.494385 8_3:-61871567 Msa1300350:CDS
TGAAGAGCTTCTGGATATGA+AGG 0.497130 8_3:+61870432 None:intergenic
GAACAACGAGCAGCTGGAGT+TGG 0.499688 8_3:-61872938 Msa1300350:CDS
AGTCTAGATAGTAGGGCGTT+GGG 0.502257 8_3:-61870146 Msa1300350:three_prime_UTR
TAGTCTAGATAGTAGGGCGT+TGG 0.503563 8_3:-61870147 Msa1300350:three_prime_UTR
TGTCTCTTATCTGCAGATGA+TGG 0.503804 8_3:-61872991 None:intergenic
TAGACGAGAGGACTGACGTT+TGG 0.506638 8_3:-61871523 Msa1300350:CDS
TTCAGCCCCAAGCTGCTATG+AGG 0.508302 8_3:-61870389 Msa1300350:CDS
TGTTCTTCAAATATTTCGGC+AGG 0.511807 8_3:-61872606 Msa1300350:intron
GTTCTCATAACACACAGAAA+AGG 0.516035 8_3:-61872150 Msa1300350:CDS
ACCACCACTGGCCATACTGA+TGG 0.518489 8_3:-61872124 Msa1300350:CDS
ACTGGCTATTGTAAATGCTC+AGG 0.518915 8_3:-61870478 Msa1300350:CDS
CTCTTCATCAGTTCGTGTCA+TGG 0.519184 8_3:-61870416 Msa1300350:CDS
GATAATGATATCGTCTATCC+GGG 0.519411 8_3:+61870365 None:intergenic
AGCCTACTCAAGAAACATCT+TGG 0.522960 8_3:-61872730 Msa1300350:CDS
CTCAATGAGTTATCATCGTA+GGG 0.525641 8_3:-61870314 Msa1300350:exon
ACAGATACGTTTAACTCTGT+GGG 0.526892 8_3:+61870200 None:intergenic
GGAGCTAATCTTCTTCCTTG+CGG 0.539998 8_3:+61872083 None:intergenic
CAAAACAATGAAAGCCAAGA+AGG 0.541448 8_3:-61872648 Msa1300350:CDS
TCTCAATGAGTTATCATCGT+AGG 0.547768 8_3:-61870315 Msa1300350:exon
TCTCCAAGTGCATATTCAAA+CGG 0.554376 8_3:+61870519 None:intergenic
TATGAAGGTTTAAGTCCAGC+TGG 0.554831 8_3:+61870447 None:intergenic
TCAACTCAACAGCTTTGTGC+AGG 0.560174 8_3:-61872234 Msa1300350:intron
AAATAACAAGTACGCTTCAT+GGG 0.562791 8_3:+61872706 None:intergenic
CGGGGCCTCATAGCAGCTTG+GGG 0.569578 8_3:+61870384 None:intergenic
TCTCCGTTTGAATATGCACT+TGG 0.573973 8_3:-61870522 Msa1300350:CDS
CGAGCAGCTGGAGTTGGTCA+GGG 0.581004 8_3:-61872932 Msa1300350:CDS
TGGGCAATCCCACAGCTCAG+GGG 0.583786 8_3:+61871559 None:intergenic
GCTGCTCGTTGTTCTGAATG+AGG 0.586598 8_3:+61872947 None:intergenic
GTCCAAGATGTTTCTTGAGT+AGG 0.586917 8_3:+61872728 None:intergenic
ATGATTGCATGATCAAGAAG+TGG 0.592500 8_3:+61872865 None:intergenic
TGTGTTATGAGAACATTACC+AGG 0.596220 8_3:+61872159 None:intergenic
TACAGATACGTTTAACTCTG+TGG 0.596779 8_3:+61870199 None:intergenic
GCTCACAATGATGTCAAACC+TGG 0.597206 8_3:-61872177 Msa1300350:CDS
TTGGCAGTGCTCGTCCCGCA+AGG 0.600540 8_3:-61872098 Msa1300350:CDS
TCCTCTCGTCTATATCAGCA+TGG 0.609546 8_3:+61871534 None:intergenic
TCCATCAGTATGGCCAGTGG+TGG 0.622023 8_3:+61872123 None:intergenic
TGATTGCATGATCAAGAAGT+GGG 0.623676 8_3:+61872866 None:intergenic
GAAGATTAGCTCCAGATCAG+AGG 0.625557 8_3:-61872073 Msa1300350:CDS
ATTTATGCGCATAAAATCTG+AGG 0.630471 8_3:+61870045 None:intergenic
ACATCATTGTGAGCATAAGG+AGG 0.631567 8_3:+61872186 None:intergenic
ATAAAATCTGAGGAAGACAC+AGG 0.635750 8_3:+61870055 None:intergenic
TTGCAATCAACTTATCAACA+TGG 0.641794 8_3:+61870343 None:intergenic
TCGTAGGGAACAGTGTGGCA+TGG 0.643236 8_3:-61870299 Msa1300350:three_prime_UTR
TATTTGAAGAACATCTGAGG+TGG 0.650365 8_3:+61872616 None:intergenic
GCCATGCTGATATAGACGAG+AGG 0.653519 8_3:-61871535 Msa1300350:CDS
AAATATTTGAAGAACATCTG+AGG 0.664166 8_3:+61872613 None:intergenic
GCAGCTGGAGTTGGTCAGGG+AGG 0.666966 8_3:-61872929 Msa1300350:CDS
TATGCACTTGGAGAGTCTGG+TGG 0.682888 8_3:-61870510 Msa1300350:CDS
GACTAAACAGTGAAGAGACG+CGG 0.691998 8_3:+61872902 None:intergenic
TTGCATGATCAAGAAGTGGG+AGG 0.694089 8_3:+61872869 None:intergenic
TAAAATCTGAGGAAGACACA+GGG 0.695867 8_3:+61870056 None:intergenic
AAATCCATCAGTATGGCCAG+TGG 0.697664 8_3:+61872120 None:intergenic
CAGATACGTTTAACTCTGTG+GGG 0.716370 8_3:+61870201 None:intergenic
ATAATGATATCGTCTATCCG+GGG 0.742304 8_3:+61870366 None:intergenic
TATCATCGTAGGGAACAGTG+TGG 0.794948 8_3:-61870304 Msa1300350:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTATAATATCTTTTTTCATC+AGG - chr8_3:61870474-61870493 Msa1300350:CDS 15.0%
!!! TATAATATCTTTTTTCATCA+GGG - chr8_3:61870475-61870494 Msa1300350:CDS 15.0%
!! ATTTACAAACACTAAAAAAA+AGG + chr8_3:61871004-61871023 None:intergenic 15.0%
!!! CAAAGAAATTTAGTTTTAAA+TGG + chr8_3:61871261-61871280 None:intergenic 15.0%
!! AAATATATGAAAAACAATAC+TGG + chr8_3:61871771-61871790 None:intergenic 15.0%
!!! AGTATTGTTTTTCATATATT+TGG - chr8_3:61871770-61871789 Msa1300350:intron 15.0%
!!! TATGCATATATTATTGTTTT+GGG - chr8_3:61872146-61872165 Msa1300350:CDS 15.0%
!!! TTTTTTTTTCTTTTCGTTTT+TGG - chr8_3:61872851-61872870 Msa1300350:intron 15.0%
!!! ATAATATCTTTTTTCATCAG+GGG - chr8_3:61870476-61870495 Msa1300350:CDS 20.0%
!! AATCATTTGTACAAAAAGAA+TGG - chr8_3:61870650-61870669 Msa1300350:intron 20.0%
!!! CTTATAACTATATCACATTT+TGG - chr8_3:61871105-61871124 Msa1300350:intron 20.0%
!! ACAATTTCACATAATACAAA+TGG + chr8_3:61871153-61871172 None:intergenic 20.0%
!! ATTTCTTAATTTACATTACC+TGG - chr8_3:61871226-61871245 Msa1300350:intron 20.0%
!! TATAAAATAAGAGAAAGGAA+GGG - chr8_3:61871910-61871929 Msa1300350:intron 20.0%
!!! CTATGCATATATTATTGTTT+TGG - chr8_3:61872145-61872164 Msa1300350:CDS 20.0%
!!! ATGCATATATTATTGTTTTG+GGG - chr8_3:61872147-61872166 Msa1300350:CDS 20.0%
!! TGATTCTTTATTAATTCATG+TGG - chr8_3:61872456-61872475 Msa1300350:intron 20.0%
! AAATATTTGAAGAACATCTG+AGG + chr8_3:61870414-61870433 None:intergenic 25.0%
! CAGATGTTCTTCAAATATTT+CGG - chr8_3:61870414-61870433 Msa1300350:CDS 25.0%
! TGACTATAATAAGGTCTAAA+CGG + chr8_3:61870555-61870574 None:intergenic 25.0%
! AACCAAGAATGACTATAATA+AGG + chr8_3:61870564-61870583 None:intergenic 25.0%
!! TTTTGTACAAATGATTCTCA+AGG + chr8_3:61870646-61870665 None:intergenic 25.0%
! CTAAAATCTCAAAAAGAAGA+TGG + chr8_3:61870707-61870726 None:intergenic 25.0%
!! TTGATTTTACGAGGTTAAAA+GGG + chr8_3:61870774-61870793 None:intergenic 25.0%
!!! TTTTAAAATCTACACGAAAC+TGG + chr8_3:61871328-61871347 None:intergenic 25.0%
!! GAAAAAGAAAAGCTTCTTTT+CGG - chr8_3:61871352-61871371 Msa1300350:intron 25.0%
! ACATTATATGCAATAATGTG+AGG - chr8_3:61871536-61871555 Msa1300350:CDS 25.0%
!!! TTAGCAATGGATTGAAATTT+AGG - chr8_3:61871702-61871721 Msa1300350:intron 25.0%
! TAGCCTATAAAATAAGAGAA+AGG - chr8_3:61871905-61871924 Msa1300350:intron 25.0%
!!! CTTCCTTTCTCTTATTTTAT+AGG + chr8_3:61871911-61871930 None:intergenic 25.0%
! CTATAAAATAAGAGAAAGGA+AGG - chr8_3:61871909-61871928 Msa1300350:intron 25.0%
! AAACTTCTATACAAAGCTAT+TGG + chr8_3:61872218-61872237 None:intergenic 25.0%
! AAATCAAGCAATAATTCCAA+GGG + chr8_3:61872272-61872291 None:intergenic 25.0%
! TAAATCAAGCAATAATTCCA+AGG + chr8_3:61872273-61872292 None:intergenic 25.0%
! AAAAATTATCCCAACTCTAT+TGG + chr8_3:61872311-61872330 None:intergenic 25.0%
!! CTTTTAGATATATAACTGGA+CGG + chr8_3:61872787-61872806 None:intergenic 25.0%
!!! ACTGCTTTTAGATATATAAC+TGG + chr8_3:61872791-61872810 None:intergenic 25.0%
! GTCTCTTGTAATTTATGAAA+TGG - chr8_3:61872938-61872957 Msa1300350:CDS 25.0%
TGGATCTTATGCTATGAAAA+AGG - chr8_3:61870053-61870072 Msa1300350:three_prime_UTR 30.0%
TCATGCAATCATATCTGTTA+AGG - chr8_3:61870170-61870189 Msa1300350:three_prime_UTR 30.0%
AAATAACAAGTACGCTTCAT+GGG + chr8_3:61870321-61870340 None:intergenic 30.0%
!! CTTGTTATTTCCAGTTCATT+TGG - chr8_3:61870331-61870350 Msa1300350:CDS 30.0%
TTATTTCCAGTTCATTTGGA+TGG - chr8_3:61870335-61870354 Msa1300350:CDS 30.0%
AAATATTTCGGCAGGTAAAA+AGG - chr8_3:61870426-61870445 Msa1300350:CDS 30.0%
GACCTTATTATAGTCATTCT+TGG - chr8_3:61870559-61870578 Msa1300350:intron 30.0%
TAATTCATGACATGAGACTT+GGG - chr8_3:61870611-61870630 Msa1300350:intron 30.0%
! ACAAAAAGAATGGATTTCTC+TGG - chr8_3:61870660-61870679 Msa1300350:intron 30.0%
!! GTTGATTTTACGAGGTTAAA+AGG + chr8_3:61870775-61870794 None:intergenic 30.0%
TGAAATTGTATTGCCTAATG+TGG - chr8_3:61871164-61871183 Msa1300350:intron 30.0%
TTTAAATGGAATGTAAGACC+AGG + chr8_3:61871247-61871266 None:intergenic 30.0%
! CTTTGCTTGTGATTTCTTTT+TGG - chr8_3:61871276-61871295 Msa1300350:intron 30.0%
AGGATCAATATGCACATTAA+GGG + chr8_3:61871677-61871696 None:intergenic 30.0%
TATGAAAAACAATACTGGCA+GGG + chr8_3:61871766-61871785 None:intergenic 30.0%
ATATGAAAAACAATACTGGC+AGG + chr8_3:61871767-61871786 None:intergenic 30.0%
! TCTCATCTACAAGAACATTT+TGG + chr8_3:61871951-61871970 None:intergenic 30.0%
ACAATTTGAATTAGTGACTC+TGG + chr8_3:61872028-61872047 None:intergenic 30.0%
AACAGAAATCCAATAGAGTT+GGG - chr8_3:61872299-61872318 Msa1300350:intron 30.0%
TTCAAGCAAGAGTTATTTGA+TGG + chr8_3:61872383-61872402 None:intergenic 30.0%
! ACAAGATATGTTTCTAACAC+CGG + chr8_3:61872415-61872434 None:intergenic 30.0%
! TTCATGTGGCTAAAATTTTC+AGG - chr8_3:61872470-61872489 Msa1300350:intron 30.0%
!!! TGGCTAAAATTTTCAGGTAT+GGG - chr8_3:61872476-61872495 Msa1300350:intron 30.0%
TTGCAATCAACTTATCAACA+TGG + chr8_3:61872684-61872703 None:intergenic 30.0%
ATTTATGCGCATAAAATCTG+AGG + chr8_3:61872982-61873001 None:intergenic 30.0%
! TCAGATTTTATGCGCATAAA+TGG - chr8_3:61872981-61873000 Msa1300350:five_prime_UTR 30.0%
! CAGATTTTATGCGCATAAAT+GGG - chr8_3:61872982-61873001 Msa1300350:five_prime_UTR 30.0%
TGATTGCATGATCAAGAAGT+GGG + chr8_3:61870161-61870180 None:intergenic 35.0%
ATGATTGCATGATCAAGAAG+TGG + chr8_3:61870162-61870181 None:intergenic 35.0%
GAAATAACAAGTACGCTTCA+TGG + chr8_3:61870322-61870341 None:intergenic 35.0%
AATGTTCCATCCAAATGAAC+TGG + chr8_3:61870344-61870363 None:intergenic 35.0%
!! CTTCTTGGCTTTCATTGTTT+TGG + chr8_3:61870378-61870397 None:intergenic 35.0%
CAAAACAATGAAAGCCAAGA+AGG - chr8_3:61870376-61870395 Msa1300350:CDS 35.0%
TATTTGAAGAACATCTGAGG+TGG + chr8_3:61870411-61870430 None:intergenic 35.0%
TGTTCTTCAAATATTTCGGC+AGG - chr8_3:61870418-61870437 Msa1300350:CDS 35.0%
!!! ATATCTTTTTTCATCAGGGG+AGG - chr8_3:61870479-61870498 Msa1300350:CDS 35.0%
!!! TATCTTTTTTCATCAGGGGA+GGG - chr8_3:61870480-61870499 Msa1300350:CDS 35.0%
AATTGCAAAAGTGATGCTTG+AGG + chr8_3:61870516-61870535 None:intergenic 35.0%
GTAATTCATGACATGAGACT+TGG - chr8_3:61870610-61870629 Msa1300350:intron 35.0%
TTGACATCATTGTGAGCATA+AGG + chr8_3:61870844-61870863 None:intergenic 35.0%
TGTGTTATGAGAACATTACC+AGG + chr8_3:61870868-61870887 None:intergenic 35.0%
GTTCTCATAACACACAGAAA+AGG - chr8_3:61870874-61870893 Msa1300350:intron 35.0%
TGACACAACACAAAAATGTG+TGG - chr8_3:61871080-61871099 Msa1300350:intron 35.0%
ATTGTATTGCCTAATGTGGT+AGG - chr8_3:61871168-61871187 Msa1300350:intron 35.0%
! TTGTCTTGCTATGTAGGAAT+GGG - chr8_3:61871412-61871431 Msa1300350:intron 35.0%
CAGGATCAATATGCACATTA+AGG + chr8_3:61871678-61871697 None:intergenic 35.0%
ATGAAAAACAATACTGGCAG+GGG + chr8_3:61871765-61871784 None:intergenic 35.0%
!! CTACAAGAACATTTTGGTCA+GGG + chr8_3:61871945-61871964 None:intergenic 35.0%
!! TCTACAAGAACATTTTGGTC+AGG + chr8_3:61871946-61871965 None:intergenic 35.0%
TTGTAGATGAGATGTCAAGA+GGG - chr8_3:61871959-61871978 Msa1300350:intron 35.0%
! GCTATTGGATTTTATTCACG+TGG + chr8_3:61872203-61872222 None:intergenic 35.0%
CAACAGAAATCCAATAGAGT+TGG - chr8_3:61872298-61872317 Msa1300350:intron 35.0%
! GAGTTATTTGATGGTACTGA+TGG + chr8_3:61872374-61872393 None:intergenic 35.0%
CTTGCTTGAAAACAACTATC+CGG - chr8_3:61872393-61872412 Msa1300350:intron 35.0%
!!! GTGGCTAAAATTTTCAGGTA+TGG - chr8_3:61872475-61872494 Msa1300350:intron 35.0%
!!! GGCTAAAATTTTCAGGTATG+GGG - chr8_3:61872477-61872496 Msa1300350:intron 35.0%
TCTCCAAGTGCATATTCAAA+CGG + chr8_3:61872508-61872527 None:intergenic 35.0%
TTGTAAATGCTCAGGTCAAA+TGG - chr8_3:61872554-61872573 Msa1300350:intron 35.0%
ATAATGATATCGTCTATCCG+GGG + chr8_3:61872661-61872680 None:intergenic 35.0%
GATAATGATATCGTCTATCC+GGG + chr8_3:61872662-61872681 None:intergenic 35.0%
GGATAATGATATCGTCTATC+CGG + chr8_3:61872663-61872682 None:intergenic 35.0%
TCTCAATGAGTTATCATCGT+AGG - chr8_3:61872709-61872728 Msa1300350:CDS 35.0%
CTCAATGAGTTATCATCGTA+GGG - chr8_3:61872710-61872729 Msa1300350:CDS 35.0%
ACAGATACGTTTAACTCTGT+GGG + chr8_3:61872827-61872846 None:intergenic 35.0%
TACAGATACGTTTAACTCTG+TGG + chr8_3:61872828-61872847 None:intergenic 35.0%
!! TTGGTGTTAGTCTAGATAGT+AGG - chr8_3:61872870-61872889 Msa1300350:CDS 35.0%
! TGGTGTTAGTCTAGATAGTA+GGG - chr8_3:61872871-61872890 Msa1300350:CDS 35.0%
TAAAATCTGAGGAAGACACA+GGG + chr8_3:61872971-61872990 None:intergenic 35.0%
ATAAAATCTGAGGAAGACAC+AGG + chr8_3:61872972-61872991 None:intergenic 35.0%
! GTAGAATGTGTCCCTTTTGT+TGG - chr8_3:61870270-61870289 Msa1300350:three_prime_UTR 40.0%
AGCCTACTCAAGAAACATCT+TGG - chr8_3:61870294-61870313 Msa1300350:three_prime_UTR 40.0%
GTCCAAGATGTTTCTTGAGT+AGG + chr8_3:61870299-61870318 None:intergenic 40.0%
!!! GCTGTTGAGTTGATTTTACG+AGG + chr8_3:61870783-61870802 None:intergenic 40.0%
ACATCATTGTGAGCATAAGG+AGG + chr8_3:61870841-61870860 None:intergenic 40.0%
ACTGCCAAAATCCATCAGTA+TGG + chr8_3:61870914-61870933 None:intergenic 40.0%
AAGAATGAATCACCTGCAAC+TGG + chr8_3:61870981-61871000 None:intergenic 40.0%
TAGGTGCATATGCATCATCA+AGG - chr8_3:61871187-61871206 Msa1300350:intron 40.0%
! TTCTTTTCGGTCATCTAGCT+TGG - chr8_3:61871365-61871384 Msa1300350:intron 40.0%
TTCCTACATAGCAAGACAAG+TGG + chr8_3:61871411-61871430 None:intergenic 40.0%
! CTTGTCTTGCTATGTAGGAA+TGG - chr8_3:61871411-61871430 Msa1300350:intron 40.0%
! GTGCCTTCATAACCACATTT+TGG - chr8_3:61871613-61871632 Msa1300350:intron 40.0%
GGACCAAAATGTGGTTATGA+AGG + chr8_3:61871619-61871638 None:intergenic 40.0%
AAGGGTTTAGATCAAGTGCA+TGG + chr8_3:61871659-61871678 None:intergenic 40.0%
TTGATCCTGCAAGTTAGCAA+TGG - chr8_3:61871689-61871708 Msa1300350:intron 40.0%
! TCAATCCATTGCTAACTTGC+AGG + chr8_3:61871697-61871716 None:intergenic 40.0%
CTTGTAGATGAGATGTCAAG+AGG - chr8_3:61871958-61871977 Msa1300350:intron 40.0%
TTTACTGATGCCCATGCTAT+TGG - chr8_3:61872118-61872137 Msa1300350:CDS 40.0%
GCATAGTGATCCAATAGCAT+GGG + chr8_3:61872131-61872150 None:intergenic 40.0%
TGCATAGTGATCCAATAGCA+TGG + chr8_3:61872132-61872151 None:intergenic 40.0%
CCTCAAGAGTCAAGAAAACA+CGG + chr8_3:61872243-61872262 None:intergenic 40.0%
! CGTGTTTTCTTGACTCTTGA+GGG - chr8_3:61872241-61872260 Msa1300350:intron 40.0%
AAGCAATAATTCCAAGGGAG+AGG + chr8_3:61872267-61872286 None:intergenic 40.0%
TCTCCGTTTGAATATGCACT+TGG - chr8_3:61872502-61872521 Msa1300350:intron 40.0%
CATTTACAATAGCCAGTTGC+AGG + chr8_3:61872543-61872562 None:intergenic 40.0%
ACTGGCTATTGTAAATGCTC+AGG - chr8_3:61872546-61872565 Msa1300350:intron 40.0%
TATGAAGGTTTAAGTCCAGC+TGG + chr8_3:61872580-61872599 None:intergenic 40.0%
TGAAGAGCTTCTGGATATGA+AGG + chr8_3:61872595-61872614 None:intergenic 40.0%
CAGATACGTTTAACTCTGTG+GGG + chr8_3:61872826-61872845 None:intergenic 40.0%
GACTAAACAGTGAAGAGACG+CGG + chr8_3:61870125-61870144 None:intergenic 45.0%
TCAAGAAGTGGGAGGAGATT+GGG + chr8_3:61870150-61870169 None:intergenic 45.0%
ATCAAGAAGTGGGAGGAGAT+TGG + chr8_3:61870151-61870170 None:intergenic 45.0%
TTGCATGATCAAGAAGTGGG+AGG + chr8_3:61870158-61870177 None:intergenic 45.0%
! AGCAGGAAAGGTGTAAGTGT+TGG + chr8_3:61870217-61870236 None:intergenic 45.0%
TACACCTTTCCTGCTTAGCT+CGG - chr8_3:61870222-61870241 Msa1300350:three_prime_UTR 45.0%
TGAGTAGGCTGCCAACAAAA+GGG + chr8_3:61870284-61870303 None:intergenic 45.0%
TTGAGTAGGCTGCCAACAAA+AGG + chr8_3:61870285-61870304 None:intergenic 45.0%
GGTGGAATAGTGTTCCTTCT+TGG + chr8_3:61870393-61870412 None:intergenic 45.0%
! TCAACTCAACAGCTTTGTGC+AGG - chr8_3:61870790-61870809 Msa1300350:intron 45.0%
GCTCACAATGATGTCAAACC+TGG - chr8_3:61870847-61870866 Msa1300350:intron 45.0%
AAATCCATCAGTATGGCCAG+TGG + chr8_3:61870907-61870926 None:intergenic 45.0%
!!! CTGGCCATACTGATGGATTT+TGG - chr8_3:61870907-61870926 Msa1300350:intron 45.0%
GAGCTAATCTTCTTCCTTGC+GGG + chr8_3:61870943-61870962 None:intergenic 45.0%
GGAGCTAATCTTCTTCCTTG+CGG + chr8_3:61870944-61870963 None:intergenic 45.0%
! GAAGATTAGCTCCAGATCAG+AGG - chr8_3:61870951-61870970 Msa1300350:intron 45.0%
AGAACTTCCACTTGCAGAAC+TGG - chr8_3:61871051-61871070 Msa1300350:intron 45.0%
ACAGAAACCAGTTCTGCAAG+TGG + chr8_3:61871061-61871080 None:intergenic 45.0%
GCATATGCACCTACCACATT+AGG + chr8_3:61871180-61871199 None:intergenic 45.0%
! CTAGCTTGGATTTTCTGACC+TGG - chr8_3:61871379-61871398 Msa1300350:intron 45.0%
! TGCCACTTGTCTTGCTATGT+AGG - chr8_3:61871406-61871425 Msa1300350:intron 45.0%
CGTCTATATCAGCATGGCTT+GGG + chr8_3:61871487-61871506 None:intergenic 45.0%
TCGTCTATATCAGCATGGCT+TGG + chr8_3:61871488-61871507 None:intergenic 45.0%
TCCTCTCGTCTATATCAGCA+TGG + chr8_3:61871493-61871512 None:intergenic 45.0%
AGGAGTTGAGGACCAAAATG+TGG + chr8_3:61871628-61871647 None:intergenic 45.0%
ATGGCACATATGAGGAGTTG+AGG + chr8_3:61871640-61871659 None:intergenic 45.0%
TCAAGTGCATGGCACATATG+AGG + chr8_3:61871648-61871667 None:intergenic 45.0%
TGTTCACATGTCTGTGTGTG+AGG - chr8_3:61871800-61871819 Msa1300350:intron 45.0%
!! TCTGGCTCTTTAGTAGGACT+TGG + chr8_3:61872010-61872029 None:intergenic 45.0%
!! AGTGACTCTGGCTCTTTAGT+AGG + chr8_3:61872016-61872035 None:intergenic 45.0%
! CCGTGTTTTCTTGACTCTTG+AGG - chr8_3:61872240-61872259 Msa1300350:intron 45.0%
GAATATGCACTTGGAGAGTC+TGG - chr8_3:61872511-61872530 Msa1300350:intron 45.0%
ACGAACTGATGAAGAGCTTC+TGG + chr8_3:61872604-61872623 None:intergenic 45.0%
CTCTTCATCAGTTCGTGTCA+TGG - chr8_3:61872608-61872627 Msa1300350:CDS 45.0%
TATCATCGTAGGGAACAGTG+TGG - chr8_3:61872720-61872739 Msa1300350:CDS 45.0%
TAGTCTAGATAGTAGGGCGT+TGG - chr8_3:61872877-61872896 Msa1300350:CDS 45.0%
! AGTCTAGATAGTAGGGCGTT+GGG - chr8_3:61872878-61872897 Msa1300350:CDS 45.0%
! GCTGCTCGTTGTTCTGAATG+AGG + chr8_3:61870080-61870099 None:intergenic 50.0%
CATTCAGAACAACGAGCAGC+TGG - chr8_3:61870080-61870099 Msa1300350:three_prime_UTR 50.0%
CAAGAAGTGGGAGGAGATTG+GGG + chr8_3:61870149-61870168 None:intergenic 50.0%
! AAAAGCATGCCGAGCTAAGC+AGG + chr8_3:61870234-61870253 None:intergenic 50.0%
CAGAAAAGGACAACCACCAC+TGG - chr8_3:61870888-61870907 Msa1300350:intron 50.0%
CAAGACAAGTGGCAAACACC+AGG + chr8_3:61871400-61871419 None:intergenic 50.0%
GCCATGCTGATATAGACGAG+AGG - chr8_3:61871489-61871508 Msa1300350:intron 50.0%
TAGACGAGAGGACTGACGTT+TGG - chr8_3:61871501-61871520 Msa1300350:CDS 50.0%
AGGACTGACGTTTGGTCACT+AGG - chr8_3:61871509-61871528 Msa1300350:CDS 50.0%
TATGCACTTGGAGAGTCTGG+TGG - chr8_3:61872514-61872533 Msa1300350:intron 50.0%
TGAGGAAGACACAGGGAGAT+TGG + chr8_3:61872964-61872983 None:intergenic 50.0%
GAACAACGAGCAGCTGGAGT+TGG - chr8_3:61870086-61870105 Msa1300350:three_prime_UTR 55.0%
CATGCCGAGCTAAGCAGGAA+AGG + chr8_3:61870229-61870248 None:intergenic 55.0%
ACCACCACTGGCCATACTGA+TGG - chr8_3:61870900-61870919 Msa1300350:intron 55.0%
TCCATCAGTATGGCCAGTGG+TGG + chr8_3:61870904-61870923 None:intergenic 55.0%
! CAACTGGAGTGCCTCTGATC+TGG + chr8_3:61870965-61870984 None:intergenic 55.0%
!! ATCAGAGGCACTCCAGTTGC+AGG - chr8_3:61870966-61870985 Msa1300350:intron 55.0%
TTGGGCAATCCCACAGCTCA+GGG + chr8_3:61871469-61871488 None:intergenic 55.0%
ATGTCAAGAGGGCTGAGCTC+TGG - chr8_3:61871970-61871989 Msa1300350:intron 55.0%
TTCAGCCCCAAGCTGCTATG+AGG - chr8_3:61872635-61872654 Msa1300350:CDS 55.0%
TCGTAGGGAACAGTGTGGCA+TGG - chr8_3:61872725-61872744 Msa1300350:CDS 55.0%
! ACGAGCAGCTGGAGTTGGTC+AGG - chr8_3:61870091-61870110 Msa1300350:three_prime_UTR 60.0%
! CGAGCAGCTGGAGTTGGTCA+GGG - chr8_3:61870092-61870111 Msa1300350:three_prime_UTR 60.0%
TTCATCAGGGGAGGGCGACT+AGG - chr8_3:61870488-61870507 Msa1300350:CDS 60.0%
TCATCAGGGGAGGGCGACTA+GGG - chr8_3:61870489-61870508 Msa1300350:CDS 60.0%
TTTCCGAGCCCCTGAGCTGT+GGG - chr8_3:61871457-61871476 Msa1300350:intron 60.0%
AATCCCACAGCTCAGGGGCT+CGG + chr8_3:61871463-61871482 None:intergenic 60.0%
TGGGCAATCCCACAGCTCAG+GGG + chr8_3:61871468-61871487 None:intergenic 60.0%
CTTGGGCAATCCCACAGCTC+AGG + chr8_3:61871470-61871489 None:intergenic 60.0%
!! AAGAGGGCTGAGCTCTGGAG+AGG - chr8_3:61871975-61871994 Msa1300350:intron 60.0%
!! AGAGGGCTGAGCTCTGGAGA+GGG - chr8_3:61871976-61871995 Msa1300350:intron 60.0%
ACTCTTGAGGGCCTCTCCCT+TGG - chr8_3:61872253-61872272 Msa1300350:intron 60.0%
GTCTGGTGGAAGCCTGCAAC+TGG - chr8_3:61872528-61872547 Msa1300350:intron 60.0%
GCTCAGGTCAAATGGCCAGC+TGG - chr8_3:61872562-61872581 Msa1300350:intron 60.0%
! GCAGCTGGAGTTGGTCAGGG+AGG - chr8_3:61870095-61870114 Msa1300350:three_prime_UTR 65.0%
TTGGCAGTGCTCGTCCCGCA+AGG - chr8_3:61870926-61870945 Msa1300350:intron 65.0%
CACAGCTCAGGGGCTCGGAA+AGG + chr8_3:61871458-61871477 None:intergenic 65.0%
CTTTCCGAGCCCCTGAGCTG+TGG - chr8_3:61871456-61871475 Msa1300350:intron 65.0%
!! GAGGGCTGAGCTCTGGAGAG+GGG - chr8_3:61871977-61871996 Msa1300350:intron 65.0%
CGGGGCCTCATAGCAGCTTG+GGG + chr8_3:61872643-61872662 None:intergenic 65.0%
CCGGGGCCTCATAGCAGCTT+GGG + chr8_3:61872644-61872663 None:intergenic 65.0%
CCCAAGCTGCTATGAGGCCC+CGG - chr8_3:61872641-61872660 Msa1300350:CDS 65.0%
TCCGGGGCCTCATAGCAGCT+TGG + chr8_3:61872645-61872664 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr8_3 gene 61870041 61873005 61870041 ID=Msa1300350;Name=Msa1300350
chr8_3 mRNA 61870041 61873005 61870041 ID=Msa1300350-mRNA-1;Parent=Msa1300350;Name=Msa1300350-mRNA-1;_AED=0.05;_eAED=0.05;_QI=25|1|1|1|1|1|5|288|268
chr8_3 exon 61870041 61870554 61870041 ID=Msa1300350-mRNA-1:exon:18300;Parent=Msa1300350-mRNA-1
chr8_3 exon 61871494 61871618 61871494 ID=Msa1300350-mRNA-1:exon:18299;Parent=Msa1300350-mRNA-1
chr8_3 exon 61872059 61872244 61872059 ID=Msa1300350-mRNA-1:exon:18298;Parent=Msa1300350-mRNA-1
chr8_3 exon 61872607 61872750 61872607 ID=Msa1300350-mRNA-1:exon:18297;Parent=Msa1300350-mRNA-1
chr8_3 exon 61872855 61873005 61872855 ID=Msa1300350-mRNA-1:exon:18296;Parent=Msa1300350-mRNA-1
chr8_3 five_prime_UTR 61872981 61873005 61872981 ID=Msa1300350-mRNA-1:five_prime_utr;Parent=Msa1300350-mRNA-1
chr8_3 CDS 61872855 61872980 61872855 ID=Msa1300350-mRNA-1:cds;Parent=Msa1300350-mRNA-1
chr8_3 CDS 61872607 61872750 61872607 ID=Msa1300350-mRNA-1:cds;Parent=Msa1300350-mRNA-1
chr8_3 CDS 61872059 61872244 61872059 ID=Msa1300350-mRNA-1:cds;Parent=Msa1300350-mRNA-1
chr8_3 CDS 61871494 61871618 61871494 ID=Msa1300350-mRNA-1:cds;Parent=Msa1300350-mRNA-1
chr8_3 CDS 61870329 61870554 61870329 ID=Msa1300350-mRNA-1:cds;Parent=Msa1300350-mRNA-1
chr8_3 three_prime_UTR 61870041 61870328 61870041 ID=Msa1300350-mRNA-1:three_prime_utr;Parent=Msa1300350-mRNA-1
Gene Sequence

>Msa1300350

ATGAAAAAGGTCCTCATTCAGAACAACGAGCAGCTGGAGTTGGTCAGGGAGGAGATCCGCGTCTCTTCACTGTTTAGTCACCCCAATCTCCTCCCACTTCTTGATCATGCAATCATATCTGTTAAGCCTACTCAAGAAACATCTTGGACCCATGAAGCGTACTTGTTATTTCCAGTTCATTTGGATGGAACATTGCTAGACAATGCCAAAACAATGAAAGCCAAGAAGGAACACTATTCCACCTCAGATGTTCTTCAAATATTTCGGCAGCTTTGTGCAGGACTAAAGCACATGCACAATTTAGATCCTCCTTATGCTCACAATGATGTCAAACCTGGTAATGTTCTCATAACACACAGAAAAGGACAACCACCACTGGCCATACTGATGGATTTTGGCAGTGCTCGTCCCGCAAGGAAGAAGATTAGCTCCAGATCAGAGGCACTCCAGTTGCAGGAATGGGCATCTGAACATGTCTCTGCTCCTTTCCGAGCCCCTGAGCTGTGGGATTGCCCAAGCCATGCTGATATAGACGAGAGGACTGACGTTTGGTCACTAGGATGCACATTATATGCAATAATGTATGGGGTATCTCCGTTTGAATATGCACTTGGAGAGTCTGGTGGAAGCCTGCAACTGGCTATTGTAAATGCTCAGGTCAAATGGCCAGCTGGACTTAAACCTTCATATCCAGAAGCTCTTCATCAGTTCGTGTCATGGATGCTTCAGCCCCAAGCTGCTATGAGGCCCCGGATAGACGATATCATTATCCATGTTGATAAGTTGATTGCAAAGTTCTCTCAATGA

Protein sequence

>Msa1300350

MKKVLIQNNEQLELVREEIRVSSLFSHPNLLPLLDHAIISVKPTQETSWTHEAYLLFPVHLDGTLLDNAKTMKAKKEHYSTSDVLQIFRQLCAGLKHMHNLDPPYAHNDVKPGNVLITHRKGQPPLAILMDFGSARPARKKISSRSEALQLQEWASEHVSAPFRAPELWDCPSHADIDERTDVWSLGCTLYAIMYGVSPFEYALGESGGSLQLAIVNAQVKWPAGLKPSYPEALHQFVSWMLQPQAAMRPRIDDIIIHVDKLIAKFSQ*