AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0773840


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0773840 MtrunA17_Chr5g0427821 96.364 110 4 0 2 111 3 112 8.60e-78 224
Msa0773840 MtrunA17_Chr7g0214171 90.566 106 10 0 6 111 1 106 7.57e-70 204
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0773840 AT4G24440.2 85.849 106 15 0 6 111 1 106 8.45e-67 196
Msa0773840 AT4G24440.1 85.849 106 15 0 6 111 1 106 8.45e-67 196

Find 34 sgRNAs with CRISPR-Local

Find 232 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGATAATATAACATGGTAAT+TGG 0.189361 5_2:-49185854 Msa0773840:three_prime_UTR
AAACTGAACGAGAATCTTAA+TGG 0.262548 5_2:+49189262 None:intergenic
GACAGATACTTTGGATGATA+TGG 0.265182 5_2:-49189315 Msa0773840:CDS
AAATAAACAAGTTTGTTTAC+TGG 0.314878 5_2:+49185791 None:intergenic
TATTTATCTCTGGAAAACTA+TGG 0.329338 5_2:-49185773 Msa0773840:three_prime_UTR
CAAACTTGTTTATTTATCTC+TGG 0.333682 5_2:-49185783 Msa0773840:three_prime_UTR
GAATGGCCTTAATTTCTTGC+AGG 0.346584 5_2:-49185951 Msa0773840:three_prime_UTR
TTAGTTCCTGCAAGAAATTA+AGG 0.350443 5_2:+49185945 None:intergenic
ACTGTTATGATAGATTTAAA+AGG 0.403602 5_2:-49185915 Msa0773840:three_prime_UTR
ATTAAGGCCATTCATCACTA+TGG 0.430107 5_2:+49185961 None:intergenic
GATTCTCGTTCAGTTTGATA+AGG 0.442125 5_2:-49189255 Msa0773840:intron
TAAGAGCAAGGTTTCTATCA+AGG 0.442664 5_2:-49188938 Msa0773840:intron
GTAGTCTATGACTGAGGCTC+TGG 0.444634 5_2:-49188971 Msa0773840:intron
AGAATCTTAATGGCATGTTC+AGG 0.445439 5_2:+49189272 None:intergenic
CAAAGCATCTTGTAAGATGA+AGG 0.487212 5_2:+49186127 None:intergenic
ACAGTGCTTGACAGATACTT+TGG 0.488404 5_2:-49189324 Msa0773840:CDS
GGAGTAATGGATTAACTTTG+AGG 0.495617 5_2:+49185733 None:intergenic
TTGGATGATATGGTTCAGAA+TGG 0.519938 5_2:-49189305 Msa0773840:CDS
CAAGTTTGTTTACTGGCTCA+TGG 0.525051 5_2:+49185798 None:intergenic
ATAATCTAATGCCATGGAGA+TGG 0.525477 5_2:+49185888 None:intergenic
ATCATCTGCTGGTACTGTGA+TGG 0.553988 5_2:-49185989 Msa0773840:three_prime_UTR
GGAGCATTGCCATCATCTGC+TGG 0.558976 5_2:-49186000 Msa0773840:three_prime_UTR
GAAGACAAGCAAGAGAATGT+TGG 0.560487 5_2:-49186095 Msa0773840:CDS
ATCACAGTACCAGCAGATGA+TGG 0.566223 5_2:+49185991 None:intergenic
TAAAAGGCCTTCCATCTCCA+TGG 0.571662 5_2:-49185899 Msa0773840:three_prime_UTR
GGCTAGACCATAGTGATGAA+TGG 0.585530 5_2:-49185968 Msa0773840:three_prime_UTR
ACATTAATAATCTAATGCCA+TGG 0.597098 5_2:+49185882 None:intergenic
GCATGTGACTCAAAGTTGCT+TGG 0.601308 5_2:-49186056 Msa0773840:CDS
TGTTGGACGTGTTAAAATTG+TGG 0.603638 5_2:-49186078 Msa0773840:CDS
GGAGACGAAAGTTAAGAGCA+AGG 0.632666 5_2:-49188950 Msa0773840:CDS
CTTTATCGTAGGTCGACGAT+CGG 0.638161 5_2:-49189347 Msa0773840:CDS
TCTAATGCCATGGAGATGGA+AGG 0.638346 5_2:+49185892 None:intergenic
TTGATTGATCATAATCAATG+AGG 0.646669 5_2:-49186021 Msa0773840:three_prime_UTR
CGACGTTCGAACTTTATCGT+AGG 0.648273 5_2:-49189358 Msa0773840:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATATATATATAAGATAAAGT+TGG + chr5_2:49186314-49186333 None:intergenic 10.0%
!! AATAAGATACAAATAAATAA+TGG + chr5_2:49186412-49186431 None:intergenic 10.0%
!! AGATAAAATTCAATAAATAA+GGG + chr5_2:49188794-49188813 None:intergenic 10.0%
!! TAGATAAAATTCAATAAATA+AGG + chr5_2:49188795-49188814 None:intergenic 10.0%
!!! ATAAAATATTATTTTGCATA+TGG - chr5_2:49189027-49189046 Msa0773840:intron 10.0%
!!! TAAAATATTATTTTGCATAT+GGG - chr5_2:49189028-49189047 Msa0773840:intron 10.0%
!! CTTATATATATATATATGAC+CGG - chr5_2:49186321-49186340 Msa0773840:intron 15.0%
!! AGTAATATTAAATGAATGAT+AGG - chr5_2:49186348-49186367 Msa0773840:intron 15.0%
!!! AATGTTGTAGTATATATTTT+GGG - chr5_2:49186704-49186723 Msa0773840:intron 15.0%
!!! TTTATAATGATTTATTGACT+TGG + chr5_2:49187058-49187077 None:intergenic 15.0%
!! ATGAAATAGATTATTAGAAA+AGG - chr5_2:49187297-49187316 Msa0773840:intron 15.0%
!! TTAAACTGAAATATTCAATT+TGG - chr5_2:49187516-49187535 Msa0773840:intron 15.0%
!!! ATTTTGTTTTCATCTTTTTT+TGG - chr5_2:49188232-49188251 Msa0773840:intron 15.0%
!!! TTTTGTTTTCATCTTTTTTT+GGG - chr5_2:49188233-49188252 Msa0773840:intron 15.0%
!!! GTTATTTTGATAATATAACA+TGG - chr5_2:49189568-49189587 Msa0773840:intron 15.0%
!! TGAAAAATTGAAGAAGATTA+AGG + chr5_2:49185926-49185945 None:intergenic 20.0%
!! TCTATGAAAAATTCTCTTTA+TGG - chr5_2:49186251-49186270 Msa0773840:intron 20.0%
!! TCAATGAAAATTGATGTATA+TGG + chr5_2:49186290-49186309 None:intergenic 20.0%
!!! GAATGTTGTAGTATATATTT+TGG - chr5_2:49186703-49186722 Msa0773840:intron 20.0%
!! ATAAATAACGCATTAATTTC+TGG - chr5_2:49187260-49187279 Msa0773840:intron 20.0%
!! AATAGATTATTAGAAAAGGA+TGG - chr5_2:49187301-49187320 Msa0773840:intron 20.0%
!!! TTTGTTTTCATCTTTTTTTG+GGG - chr5_2:49188234-49188253 Msa0773840:intron 20.0%
!! AAAAAAAAAACCCATTTAAC+CGG + chr5_2:49188357-49188376 None:intergenic 20.0%
!! AAAAGTAATAAATGATGCAT+TGG + chr5_2:49188758-49188777 None:intergenic 20.0%
!! AAATTCAATAAATAAGGGTA+TGG + chr5_2:49188789-49188808 None:intergenic 20.0%
!!! AACATAAAAAAGATGTTTTG+AGG + chr5_2:49189101-49189120 None:intergenic 20.0%
!! ACTGTTATGATAGATTTAAA+AGG - chr5_2:49189514-49189533 Msa0773840:intron 20.0%
!! TGATAATATAACATGGTAAT+TGG - chr5_2:49189575-49189594 Msa0773840:intron 20.0%
!!! AAATAAACAAGTTTGTTTAC+TGG + chr5_2:49189641-49189660 None:intergenic 20.0%
! GAAGATTAAGGAATTGAAAT+AGG + chr5_2:49185914-49185933 None:intergenic 25.0%
!! TTTTGGATCTGATCTAATAT+TGG - chr5_2:49186223-49186242 Msa0773840:intron 25.0%
! TCATTTAATATTACTCACTC+CGG + chr5_2:49186343-49186362 None:intergenic 25.0%
!!! TTATTGATTTGAATTGCATG+TGG - chr5_2:49186430-49186449 Msa0773840:intron 25.0%
!! ATCTTTTGTTACATAGTGTA+AGG - chr5_2:49186553-49186572 Msa0773840:intron 25.0%
!! AAGGTGTTAAAAAAATTGTG+TGG - chr5_2:49186572-49186591 Msa0773840:intron 25.0%
! AAAAAAATTGTGTGGAATGA+TGG - chr5_2:49186580-49186599 Msa0773840:intron 25.0%
! TGTTATTAGGATATATGCTT+AGG - chr5_2:49186604-49186623 Msa0773840:intron 25.0%
! GTTATTAGGATATATGCTTA+GGG - chr5_2:49186605-49186624 Msa0773840:intron 25.0%
!!! TTGTAGTATATATTTTGGGT+TGG - chr5_2:49186708-49186727 Msa0773840:intron 25.0%
! GTTTGTGAATATGTAAATAG+AGG + chr5_2:49186798-49186817 None:intergenic 25.0%
!!! AAAACTTTTCAAGCAATTCA+TGG + chr5_2:49186844-49186863 None:intergenic 25.0%
!!! TGCTTGAAAAGTTTTGTTAT+TGG - chr5_2:49186849-49186868 Msa0773840:intron 25.0%
! TGTAGGTTTATGCAATTTAA+TGG - chr5_2:49187160-49187179 Msa0773840:intron 25.0%
! TTACAAAGTGTAACAGAAAA+TGG - chr5_2:49187339-49187358 Msa0773840:intron 25.0%
! GTAAATAGAGAACATAAAAG+AGG + chr5_2:49187821-49187840 None:intergenic 25.0%
!! TTATTTTCATGACTTTTGAG+TGG - chr5_2:49187854-49187873 Msa0773840:intron 25.0%
! TTTGTTCAAAGTTCAGTTTA+TGG - chr5_2:49187886-49187905 Msa0773840:intron 25.0%
! CGCTATAAAATTAAGTAACA+AGG + chr5_2:49188037-49188056 None:intergenic 25.0%
!!! TTGTTTTCATCTTTTTTTGG+GGG - chr5_2:49188235-49188254 Msa0773840:intron 25.0%
!! TTATGTAGCAATTTTCTTTG+TGG - chr5_2:49188325-49188344 Msa0773840:intron 25.0%
! TGTATATATGGAACAGAAAA+TGG - chr5_2:49188393-49188412 Msa0773840:intron 25.0%
! ATGAAGATAAAACTATTCTG+TGG + chr5_2:49188444-49188463 None:intergenic 25.0%
! ATTATGTAGAAATTCTGCTA+TGG + chr5_2:49188596-49188615 None:intergenic 25.0%
! ATAGCAGAATTTCTACATAA+TGG - chr5_2:49188595-49188614 Msa0773840:intron 25.0%
! TCCACTAACTACAATTAATA+AGG - chr5_2:49188825-49188844 Msa0773840:intron 25.0%
! CCACTAACTACAATTAATAA+GGG - chr5_2:49188826-49188845 Msa0773840:intron 25.0%
!! CACTGTTTTCATTATATTGT+GGG - chr5_2:49188949-49188968 Msa0773840:CDS 25.0%
! GAAAATAAGAAGAAAAGTCA+GGG + chr5_2:49189227-49189246 None:intergenic 25.0%
! TGAAAATAAGAAGAAAAGTC+AGG + chr5_2:49189228-49189247 None:intergenic 25.0%
!!! TATTTTCACTTTTGAACCAT+AGG - chr5_2:49189240-49189259 Msa0773840:intron 25.0%
!!! ATTTTCACTTTTGAACCATA+GGG - chr5_2:49189241-49189260 Msa0773840:intron 25.0%
! TTGATTGATCATAATCAATG+AGG - chr5_2:49189408-49189427 Msa0773840:intron 25.0%
! ACATTAATAATCTAATGCCA+TGG + chr5_2:49189550-49189569 None:intergenic 25.0%
!! CAAACTTGTTTATTTATCTC+TGG - chr5_2:49189646-49189665 Msa0773840:intron 25.0%
!! TATTTATCTCTGGAAAACTA+TGG - chr5_2:49189656-49189675 Msa0773840:intron 25.0%
!! TCCAAATTCTAGGGTATATA+AGG - chr5_2:49185786-49185805 Msa0773840:three_prime_UTR 30.0%
CGAATTTGAGAGGAAAAAAT+TGG + chr5_2:49185885-49185904 None:intergenic 30.0%
TAGGTAATTACGAATTTGAG+AGG + chr5_2:49185895-49185914 None:intergenic 30.0%
! AATGTAGATCGCATTTTTCA+TGG - chr5_2:49186048-49186067 Msa0773840:exon 30.0%
AAACTGAACGAGAATCTTAA+TGG + chr5_2:49186170-49186189 None:intergenic 30.0%
ATAAATAATGGCAAACACTC+TGG + chr5_2:49186400-49186419 None:intergenic 30.0%
! TTGTTGGTTGTAGTTAAGAT+TGG - chr5_2:49186640-49186659 Msa0773840:intron 30.0%
!! TGTTATGAGCTCTAGATATT+TGG - chr5_2:49186671-49186690 Msa0773840:intron 30.0%
ACTAGAAATCTGTAAAGACA+GGG + chr5_2:49186926-49186945 None:intergenic 30.0%
TACTAGAAATCTGTAAAGAC+AGG + chr5_2:49186927-49186946 None:intergenic 30.0%
TTATGGTTTATCAATCAGCT+TGG + chr5_2:49187026-49187045 None:intergenic 30.0%
AGTGTAACAGAAAATGGATA+TGG - chr5_2:49187345-49187364 Msa0773840:intron 30.0%
!! TGGATATGGTTTGATTTTGA+CGG - chr5_2:49187359-49187378 Msa0773840:intron 30.0%
AATTTGCAGTTTGAGAGATA+AGG - chr5_2:49187618-49187637 Msa0773840:intron 30.0%
ATTTGCAGTTTGAGAGATAA+GGG - chr5_2:49187619-49187638 Msa0773840:intron 30.0%
ACTTTCATAGACATTGTACT+TGG + chr5_2:49187664-49187683 None:intergenic 30.0%
AAGTACAATGTCTATGAAAG+TGG - chr5_2:49187663-49187682 Msa0773840:intron 30.0%
AGTACAATGTCTATGAAAGT+GGG - chr5_2:49187664-49187683 Msa0773840:intron 30.0%
TTTCAACAAAAAGTTACACG+AGG + chr5_2:49187754-49187773 None:intergenic 30.0%
TATAACACACGACATTCAAA+TGG - chr5_2:49187979-49187998 Msa0773840:intron 30.0%
! ATTAAGTAACAAGGTACTTG+TGG + chr5_2:49188028-49188047 None:intergenic 30.0%
TCGTAACGACTAAAACTTAT+GGG + chr5_2:49188130-49188149 None:intergenic 30.0%
ATCGTAACGACTAAAACTTA+TGG + chr5_2:49188131-49188150 None:intergenic 30.0%
AATCAAATAAGTGACGTCAA+TGG + chr5_2:49188159-49188178 None:intergenic 30.0%
TTGACGTCACTTATTTGATT+AGG - chr5_2:49188159-49188178 Msa0773840:intron 30.0%
! ATTTTCTTTGTGGAAATGTC+CGG - chr5_2:49188335-49188354 Msa0773840:intron 30.0%
CCATATATACATTCATCATG+AGG + chr5_2:49188384-49188403 None:intergenic 30.0%
CCTCATGATGAATGTATATA+TGG - chr5_2:49188381-49188400 Msa0773840:intron 30.0%
! TACCTCTAAAGATTACAGAA+AGG - chr5_2:49188491-49188510 Msa0773840:intron 30.0%
AACCTTTCTGTAATCTTTAG+AGG + chr5_2:49188496-49188515 None:intergenic 30.0%
TTATATAGATTCTGAGTGTG+AGG - chr5_2:49188569-49188588 Msa0773840:intron 30.0%
ATTCAATGATTATGCAGTAC+AGG + chr5_2:49188659-49188678 None:intergenic 30.0%
AAGTGACAATTATTGTGAGA+TGG + chr5_2:49188692-49188711 None:intergenic 30.0%
!! CTAAAGTGACTATTGTTTTG+AGG + chr5_2:49188731-49188750 None:intergenic 30.0%
! AATAAATAAGGGTATGGTAG+TGG + chr5_2:49188783-49188802 None:intergenic 30.0%
CCCTTATTAATTGTAGTTAG+TGG + chr5_2:49188829-49188848 None:intergenic 30.0%
TTACCATTGAAATCAACACA+CGG - chr5_2:49188872-49188891 Msa0773840:intron 30.0%
AACACTCCACTCATAATATA+GGG + chr5_2:49188917-49188936 None:intergenic 30.0%
TAACACTCCACTCATAATAT+AGG + chr5_2:49188918-49188937 None:intergenic 30.0%
CCACAATATAATGAAAACAG+TGG + chr5_2:49188951-49188970 None:intergenic 30.0%
! CCACTGTTTTCATTATATTG+TGG - chr5_2:49188948-49188967 Msa0773840:CDS 30.0%
!!! AAAAAGATGTTTTGAGGTGT+TGG + chr5_2:49189095-49189114 None:intergenic 30.0%
AAAAGTCAGGGAAAGAAAAT+GGG + chr5_2:49189215-49189234 None:intergenic 30.0%
TTAGTTCCTGCAAGAAATTA+AGG + chr5_2:49189487-49189506 None:intergenic 30.0%
GCCTTATATACCCTAGAATT+TGG + chr5_2:49185790-49185809 None:intergenic 35.0%
! TTTTGCGAGCGAAGAAAATT+GGG + chr5_2:49185813-49185832 None:intergenic 35.0%
! ATTTTGCGAGCGAAGAAAAT+TGG + chr5_2:49185814-49185833 None:intergenic 35.0%
GACAGATACTTTGGATGATA+TGG - chr5_2:49186114-49186133 Msa0773840:CDS 35.0%
TTGGATGATATGGTTCAGAA+TGG - chr5_2:49186124-49186143 Msa0773840:CDS 35.0%
AGAATCTTAATGGCATGTTC+AGG + chr5_2:49186160-49186179 None:intergenic 35.0%
GATTCTCGTTCAGTTTGATA+AGG - chr5_2:49186174-49186193 Msa0773840:intron 35.0%
!!! GACACTAGGATTTTGGTTTT+TGG - chr5_2:49186206-49186225 Msa0773840:intron 35.0%
TGCATACCTAACAAAACACT+AGG - chr5_2:49186371-49186390 Msa0773840:intron 35.0%
! GATTTTGTAGTCTATGACTG+AGG - chr5_2:49186452-49186471 Msa0773840:intron 35.0%
TAAGAGCAAGGTTTCTATCA+AGG - chr5_2:49186491-49186510 Msa0773840:intron 35.0%
! GTGGAATGATGGTTGTTATT+AGG - chr5_2:49186591-49186610 Msa0773840:intron 35.0%
! AGGGTTGTTTGATGTTTTGT+TGG - chr5_2:49186624-49186643 Msa0773840:intron 35.0%
AGAAAGTGATGTTTACGACA+CGG + chr5_2:49186875-49186894 None:intergenic 35.0%
CACAGCGAAAATTTCTTTAC+AGG + chr5_2:49186971-49186990 None:intergenic 35.0%
!! TGACTTGGTTTGTGTGTTTA+TGG + chr5_2:49187043-49187062 None:intergenic 35.0%
ATTGCATAAACCTACAACCA+GGG + chr5_2:49187156-49187175 None:intergenic 35.0%
AATTGCATAAACCTACAACC+AGG + chr5_2:49187157-49187176 None:intergenic 35.0%
! ACGGTGATATATGTTTTCTC+AGG - chr5_2:49187378-49187397 Msa0773840:intron 35.0%
AAAATATAATGAACCCAGCG+TGG - chr5_2:49187552-49187571 Msa0773840:intron 35.0%
AAATATAATGAACCCAGCGT+GGG - chr5_2:49187553-49187572 Msa0773840:intron 35.0%
AAATTTATGGGTGAGGTTGA+GGG - chr5_2:49187577-49187596 Msa0773840:intron 35.0%
GTTTGAGAGATAAGGGAAAA+AGG - chr5_2:49187626-49187645 Msa0773840:intron 35.0%
! AACATAAAAGAGGCGTGTTA+CGG + chr5_2:49187811-49187830 None:intergenic 35.0%
CTAAACACTTGAGGTTCATT+TGG - chr5_2:49188059-49188078 Msa0773840:intron 35.0%
! AAGAGTGAGAAAGAGTATAG+TGG + chr5_2:49188211-49188230 None:intergenic 35.0%
! GTAATCTTTAGAGGTATGAC+AGG + chr5_2:49188487-49188506 None:intergenic 35.0%
!! TAGCTGAGCTTTGAATTTCT+AGG - chr5_2:49188535-49188554 Msa0773840:intron 35.0%
ATGGAGTTAACCTGAATCTT+TGG - chr5_2:49188614-49188633 Msa0773840:intron 35.0%
TGGAGTTAACCTGAATCTTT+GGG - chr5_2:49188615-49188634 Msa0773840:intron 35.0%
GACAATTATTGTGAGATGGA+GGG + chr5_2:49188688-49188707 None:intergenic 35.0%
TGACAATTATTGTGAGATGG+AGG + chr5_2:49188689-49188708 None:intergenic 35.0%
ATCGTTCCCTATATTATGAG+TGG - chr5_2:49188908-49188927 Msa0773840:intron 35.0%
! ATGAGTGGAGTGTTATGATT+TGG - chr5_2:49188923-49188942 Msa0773840:intron 35.0%
AACACATTGGCAACATGAAA+TGG + chr5_2:49189056-49189075 None:intergenic 35.0%
TTTCATGTTGCCAATGTGTT+TGG - chr5_2:49189056-49189075 Msa0773840:intron 35.0%
GAAAAGTCAGGGAAAGAAAA+TGG + chr5_2:49189216-49189235 None:intergenic 35.0%
TATGTATGAAGATGTCCCTA+TGG + chr5_2:49189259-49189278 None:intergenic 35.0%
! ACAGATTTTGTGACAATGTC+TGG - chr5_2:49189278-49189297 Msa0773840:CDS 35.0%
! CAAAGCATCTTGTAAGATGA+AGG + chr5_2:49189305-49189324 None:intergenic 35.0%
TGTTGGACGTGTTAAAATTG+TGG - chr5_2:49189351-49189370 Msa0773840:CDS 35.0%
ATTAAGGCCATTCATCACTA+TGG + chr5_2:49189471-49189490 None:intergenic 35.0%
ATAATCTAATGCCATGGAGA+TGG + chr5_2:49189544-49189563 None:intergenic 35.0%
GGGTATATATAGAGGAAGCT+TGG + chr5_2:49185761-49185780 None:intergenic 40.0%
! GGAGTTGAGGGTATATATAG+AGG + chr5_2:49185769-49185788 None:intergenic 40.0%
TACCCTCAACTCCAAATTCT+AGG - chr5_2:49185776-49185795 Msa0773840:three_prime_UTR 40.0%
ACCCTCAACTCCAAATTCTA+GGG - chr5_2:49185777-49185796 Msa0773840:three_prime_UTR 40.0%
! ACCCTAGAATTTGGAGTTGA+GGG + chr5_2:49185781-49185800 None:intergenic 40.0%
! TACCCTAGAATTTGGAGTTG+AGG + chr5_2:49185782-49185801 None:intergenic 40.0%
TTTGCGAGCGAAGAAAATTG+GGG + chr5_2:49185812-49185831 None:intergenic 40.0%
! TGTTGTTGTTCTGCGAGTTA+AGG + chr5_2:49185854-49185873 None:intergenic 40.0%
ACAGTGCTTGACAGATACTT+TGG - chr5_2:49186105-49186124 Msa0773840:CDS 40.0%
CTCGTTCAGTTTGATAAGGT+TGG - chr5_2:49186178-49186197 Msa0773840:intron 40.0%
!! TAAGGTTGGTTTCAGACACT+AGG - chr5_2:49186192-49186211 Msa0773840:intron 40.0%
! GGTTTCAGACACTAGGATTT+TGG - chr5_2:49186199-49186218 Msa0773840:intron 40.0%
!! TGGTCACCTAGTGTTTTGTT+AGG + chr5_2:49186380-49186399 None:intergenic 40.0%
!! CTTTTCAAGCAATTCATGGC+CGG + chr5_2:49186840-49186859 None:intergenic 40.0%
! AAAGGATGGTAGTGAAACTG+TGG - chr5_2:49187315-49187334 Msa0773840:intron 40.0%
AATATAATGAACCCAGCGTG+GGG - chr5_2:49187554-49187573 Msa0773840:intron 40.0%
GAAATTTATGGGTGAGGTTG+AGG - chr5_2:49187576-49187595 Msa0773840:intron 40.0%
! ACATAAAAGAGGCGTGTTAC+GGG + chr5_2:49187810-49187829 None:intergenic 40.0%
! AGTAACAAGGTACTTGTGGA+TGG + chr5_2:49188024-49188043 None:intergenic 40.0%
! TATAGCGCTCTAAACACTTG+AGG - chr5_2:49188050-49188069 Msa0773840:intron 40.0%
GGATAAGTAGAGACTAACTG+TGG - chr5_2:49188256-49188275 Msa0773840:intron 40.0%
TGTTTATTGCATGTCTCGTG+TGG - chr5_2:49188281-49188300 Msa0773840:intron 40.0%
TGTGGAAATGTCCGGTTAAA+TGG - chr5_2:49188343-49188362 Msa0773840:intron 40.0%
GTGGAAATGTCCGGTTAAAT+GGG - chr5_2:49188344-49188363 Msa0773840:intron 40.0%
AACTATTCTGTGGTCTGAGT+CGG + chr5_2:49188434-49188453 None:intergenic 40.0%
GGAGTTAACCTGAATCTTTG+GGG - chr5_2:49188616-49188635 Msa0773840:intron 40.0%
GAGTTAACCTGAATCTTTGG+GGG - chr5_2:49188617-49188636 Msa0773840:intron 40.0%
ATCAAAACCCCCAAAGATTC+AGG + chr5_2:49188627-49188646 None:intergenic 40.0%
!!! GTGACTATTGTTTTGAGGCA+AGG + chr5_2:49188726-49188745 None:intergenic 40.0%
CATTGAAATCAACACACGGA+GGG - chr5_2:49188876-49188895 Msa0773840:intron 40.0%
GAAGACAAGCAAGAGAATGT+TGG - chr5_2:49189334-49189353 Msa0773840:CDS 40.0%
! GAATGGCCTTAATTTCTTGC+AGG - chr5_2:49189478-49189497 Msa0773840:intron 40.0%
!! CAAGTTTGTTTACTGGCTCA+TGG + chr5_2:49189634-49189653 None:intergenic 40.0%
!! TCTGCGAGTTAAGGTTGATG+TGG + chr5_2:49185845-49185864 None:intergenic 45.0%
CGACGTTCGAACTTTATCGT+AGG - chr5_2:49186071-49186090 Msa0773840:CDS 45.0%
CTTTATCGTAGGTCGACGAT+CGG - chr5_2:49186082-49186101 Msa0773840:CDS 45.0%
GGAGACGAAAGTTAAGAGCA+AGG - chr5_2:49186479-49186498 Msa0773840:intron 45.0%
! GGGACGAGATAACGTGTTTT+AGG + chr5_2:49186906-49186925 None:intergenic 45.0%
! ACCAAGCTGCAAGCAAGTTT+TGG - chr5_2:49187116-49187135 Msa0773840:intron 45.0%
! TCCAAAACTTGCTTGCAGCT+TGG + chr5_2:49187120-49187139 None:intergenic 45.0%
TAGTTTCCTTCCCTGGTTGT+AGG - chr5_2:49187143-49187162 Msa0773840:intron 45.0%
CATAAACCTACAACCAGGGA+AGG + chr5_2:49187152-49187171 None:intergenic 45.0%
TGAGGTTGAGGGATTATTGG+TGG - chr5_2:49187588-49187607 Msa0773840:intron 45.0%
!! AAGAGTGTCCAAGAGAGAGT+GGG - chr5_2:49187707-49187726 Msa0773840:intron 45.0%
ACACTTGAGGTTCATTTGGC+TGG - chr5_2:49188063-49188082 Msa0773840:intron 45.0%
CGTGTGGAATATGACAACTG+TGG - chr5_2:49188297-49188316 Msa0773840:intron 45.0%
!! CCTCCGTGTGTTGATTTCAA+TGG + chr5_2:49188878-49188897 None:intergenic 45.0%
CCATTGAAATCAACACACGG+AGG - chr5_2:49188875-49188894 Msa0773840:intron 45.0%
ACAAGAGCTGCCAAACACAT+TGG + chr5_2:49189069-49189088 None:intergenic 45.0%
GCATGTGACTCAAAGTTGCT+TGG - chr5_2:49189373-49189392 Msa0773840:CDS 45.0%
ATCACAGTACCAGCAGATGA+TGG + chr5_2:49189441-49189460 None:intergenic 45.0%
ATCATCTGCTGGTACTGTGA+TGG - chr5_2:49189440-49189459 Msa0773840:intron 45.0%
GGCTAGACCATAGTGATGAA+TGG - chr5_2:49189461-49189480 Msa0773840:intron 45.0%
TAAAAGGCCTTCCATCTCCA+TGG - chr5_2:49189530-49189549 Msa0773840:intron 45.0%
TCTAATGCCATGGAGATGGA+AGG + chr5_2:49189540-49189559 None:intergenic 45.0%
!! ATATAAATCATATATATATA+TGG + chr5_2:49189131-49189150 None:intergenic 5.0%
GTAGTCTATGACTGAGGCTC+TGG - chr5_2:49186458-49186477 Msa0773840:intron 50.0%
!! CGTATGCTCTTAAGCGCTGA+GGG + chr5_2:49186758-49186777 None:intergenic 50.0%
ATTCCAACCTCTCCTTGCTC+CGG - chr5_2:49186818-49186837 Msa0773840:intron 50.0%
TGGAGCATAGTTTCCTTCCC+TGG - chr5_2:49187136-49187155 Msa0773840:intron 50.0%
ACCCAGCGTGGGGAAATTTA+TGG - chr5_2:49187564-49187583 Msa0773840:intron 50.0%
CCCATAAATTTCCCCACGCT+GGG + chr5_2:49187568-49187587 None:intergenic 50.0%
CCCAGCGTGGGGAAATTTAT+GGG - chr5_2:49187565-49187584 Msa0773840:intron 50.0%
ACCCATAAATTTCCCCACGC+TGG + chr5_2:49187569-49187588 None:intergenic 50.0%
CGTGGGGAAATTTATGGGTG+AGG - chr5_2:49187570-49187589 Msa0773840:intron 50.0%
GGGTGAGGTTGAGGGATTAT+TGG - chr5_2:49187585-49187604 Msa0773840:intron 50.0%
GGTTGAGGGATTATTGGTGG+CGG - chr5_2:49187591-49187610 Msa0773840:intron 50.0%
GTCTATGAAAGTGGGTGACG+TGG - chr5_2:49187672-49187691 Msa0773840:intron 50.0%
!! GAAGAGTGTCCAAGAGAGAG+TGG - chr5_2:49187706-49187725 Msa0773840:intron 50.0%
ATCGCTTTCCCACTCTCTCT+TGG + chr5_2:49187718-49187737 None:intergenic 50.0%
AGGTTCATTTGGCTGGTGTG+TGG - chr5_2:49188070-49188089 Msa0773840:intron 50.0%
! GCGTATGCTCTTAAGCGCTG+AGG + chr5_2:49186759-49186778 None:intergenic 55.0%
AGCAATTCATGGCCGGAGCA+AGG + chr5_2:49186833-49186852 None:intergenic 55.0%
!! TGAGGGATTATTGGTGGCGG+TGG - chr5_2:49187594-49187613 Msa0773840:intron 55.0%
! GGGTGACGTGGCTCTGTAAT+TGG - chr5_2:49187684-49187703 Msa0773840:intron 55.0%
! AAGAGGCGTGTTACGGGAGA+GGG + chr5_2:49187804-49187823 None:intergenic 55.0%
! AAAGAGGCGTGTTACGGGAG+AGG + chr5_2:49187805-49187824 None:intergenic 55.0%
!! GGAGCATTGCCATCATCTGC+TGG - chr5_2:49189429-49189448 Msa0773840:intron 55.0%
TTCATGGCCGGAGCAAGGAG+AGG + chr5_2:49186828-49186847 None:intergenic 60.0%
TGGCCGGAGCAAGGAGAGGT+TGG + chr5_2:49186824-49186843 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr5_2 gene 49185737 49189714 49185737 ID=Msa0773840;Name=Msa0773840
chr5_2 mRNA 49185737 49189714 49185737 ID=Msa0773840-mRNA-1;Parent=Msa0773840;Name=Msa0773840-mRNA-1;_AED=0.07;_eAED=0.07;_QI=0|0.66|0.75|0.75|0.66|0.75|4|312|111
chr5_2 exon 49185737 49186189 49185737 ID=Msa0773840-mRNA-1:exon:14759;Parent=Msa0773840-mRNA-1
chr5_2 exon 49188939 49188989 49188939 ID=Msa0773840-mRNA-1:exon:14758;Parent=Msa0773840-mRNA-1
chr5_2 exon 49189256 49189396 49189256 ID=Msa0773840-mRNA-1:exon:14757;Parent=Msa0773840-mRNA-1
chr5_2 exon 49189712 49189714 49189712 ID=Msa0773840-mRNA-1:exon:14756;Parent=Msa0773840-mRNA-1
chr5_2 CDS 49189712 49189714 49189712 ID=Msa0773840-mRNA-1:cds;Parent=Msa0773840-mRNA-1
chr5_2 CDS 49189256 49189396 49189256 ID=Msa0773840-mRNA-1:cds;Parent=Msa0773840-mRNA-1
chr5_2 CDS 49188939 49188989 49188939 ID=Msa0773840-mRNA-1:cds;Parent=Msa0773840-mRNA-1
chr5_2 CDS 49186049 49186189 49186049 ID=Msa0773840-mRNA-1:cds;Parent=Msa0773840-mRNA-1
chr5_2 three_prime_UTR 49185737 49186048 49185737 ID=Msa0773840-mRNA-1:three_prime_utr;Parent=Msa0773840-mRNA-1
Gene Sequence

>Msa0773840

ATGATCGCATTTTTCATGGCGACGTTCGAACTTTATCGTAGGTCGACGATCGGACAGTGCTTGACAGATACTTTGGATGATATGGTTCAGAATGGAACTCTTAGTCCTGAACATGCCATTAAGATTCTCGTTCAGTTTGATAAGTCTATGACTGAGGCTCTGGAGACGAAAGTTAAGAGCAAGGTTTCTATCAAGGGACATCTTCATACATACAGATTTTGTGACAATGTCTGGACCTTCATCTTACAAGATGCTTTGTTCAAGAGTGAAGACAAGCAAGAGAATGTTGGACGTGTTAAAATTGTGGCATGTGACTCAAAGTTGCTTGGTCAATAA

Protein sequence

>Msa0773840

MIAFFMATFELYRRSTIGQCLTDTLDDMVQNGTLSPEHAIKILVQFDKSMTEALETKVKSKVSIKGHLHTYRFCDNVWTFILQDALFKSEDKQENVGRVKIVACDSKLLGQ*