AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0287350


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0287350 MtrunA17_Chr2g0284461 91.964 112 9 0 211 322 609 720 1.04e-63 214
Msa0287350 MtrunA17_Chr3g0139641 89.583 96 10 0 213 308 37 132 1.25e-54 175
Msa0287350 MtrunA17_Chr8g0386391 83.333 66 11 0 73 138 1 66 2.91e-31 112
Msa0287350 MtrunA17_Chr7g0235141 88.679 53 6 0 210 262 3 55 2.71e-25 96.3
Msa0287350 MtrunA17_Chr2g0314681 78.333 60 4 1 8 58 133 192 2.05e-20 90.1
Msa0287350 MtrunA17_Chr5g0397801 56.471 85 24 1 78 162 6 77 1.79e-19 86.7
Msa0287350 MtrunA17_Chr5g0447201 46.602 103 45 3 176 278 118 210 1.39e-15 77.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0287350 AT1G29340.1 65.766 111 33 2 211 321 621 726 2.47e-37 141
Msa0287350 AT4G20330.1 54.023 87 40 0 73 159 1 87 6.80e-17 80.1
Msa0287350 AT1G78620.2 68.852 61 10 1 7 58 150 210 1.14e-15 77.0
Msa0287350 AT1G78620.1 70.000 60 9 1 8 58 142 201 1.30e-15 77.0

Find 75 sgRNAs with CRISPR-Local

Find 229 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGATTTCAGGGCTGTTCTTC+AGG 0.254721 2_3:-29773116 Msa0287350:CDS
TTTCTCAGCTTTGGAGATTT+GGG 0.266040 2_3:-29775455 Msa0287350:intron
GCAGCCACCACCGGAGTATT+AGG 0.268237 2_3:+29774079 None:intergenic
TGCCCGTCGTATGCTACTTT+TGG 0.310121 2_3:+29773326 None:intergenic
CTTCAAACCCTACTATTTAC+CGG 0.331149 2_3:-29772391 Msa0287350:CDS
AAGGGTCTAGGGAGTGTAAT+TGG 0.341160 2_3:-29775540 Msa0287350:CDS
TCTCTACATTATGGTGGATT+AGG 0.347612 2_3:-29772304 Msa0287350:CDS
TCTTTGTCCCGGTAAATAGT+AGG 0.375645 2_3:+29772383 None:intergenic
AGAAAAGGAAGAAAGGGTCT+AGG 0.409567 2_3:-29775552 Msa0287350:CDS
TGCAATTGAAAGGGTGGTTA+AGG 0.415531 2_3:-29772434 Msa0287350:CDS
GTATTATACCACTATATTAC+AGG 0.417054 2_3:+29772190 None:intergenic
CTAGCAATTCAGCTCAAACT+AGG 0.421052 2_3:-29772264 Msa0287350:CDS
CATTATGGTGGATTAGGTAT+AGG 0.433822 2_3:-29772298 Msa0287350:CDS
GCTGCAAATGCTTCATCAAA+TGG 0.435679 2_3:-29774061 Msa0287350:CDS
GTTAAGGCACCAGCTATTGC+CGG 0.446225 2_3:-29772418 Msa0287350:CDS
GGTGTTGCTGAGAAAAGAAA+AGG 0.457328 2_3:-29775567 Msa0287350:CDS
TAGTAGGGTTTGAAGTAATC+CGG 0.457922 2_3:+29772399 None:intergenic
CACTTCATATGAGCACCAAC+GGG 0.460795 2_3:+29773962 None:intergenic
TTGCTGCGGAAAAGCTAGAT+AGG 0.464737 2_3:-29774174 Msa0287350:CDS
GAAAAGGAAGAAAGGGTCTA+GGG 0.465376 2_3:-29775551 Msa0287350:CDS
GATTTCAGGGCTGTTCTTCA+GGG 0.470284 2_3:-29773115 Msa0287350:CDS
CTTTGTCCCGGTAAATAGTA+GGG 0.471948 2_3:+29772384 None:intergenic
CTGAAATCTCCTTCCAAAAG+TGG 0.478814 2_3:+29773130 None:intergenic
TGAGAAAAGAAAAGGAAGAA+AGG 0.485302 2_3:-29775559 Msa0287350:CDS
GAGAAAAGAAAAGGAAGAAA+GGG 0.485330 2_3:-29775558 Msa0287350:CDS
AGGGATTCAAGCTTTGCTGC+AGG 0.485529 2_3:-29772244 Msa0287350:CDS
AATGACAGAATCATATCATC+AGG 0.486126 2_3:-29775780 Msa0287350:intron
TGAAGTAATCCGGCAATAGC+TGG 0.491668 2_3:+29772409 None:intergenic
AGAATTGCGTCGAGCAAAGT+TGG 0.493711 2_3:-29774112 Msa0287350:CDS
GAGGAAAGCACAAACGCAAC+CGG 0.496460 2_3:+29775506 None:intergenic
CAACATTGCTCGAGTTATGC+CGG 0.497466 2_3:-29772471 Msa0287350:CDS
TTCAAACCCTACTATTTACC+GGG 0.497622 2_3:-29772390 Msa0287350:CDS
ACGTCTAGATCTCTTTGTCC+CGG 0.502949 2_3:+29772372 None:intergenic
TCTCTGTACCTGTAATATAG+TGG 0.503843 2_3:-29772198 None:intergenic
ATTGAGATTTGTGTTGAAAG+TGG 0.506532 2_3:-29773076 Msa0287350:intron
GGATTCAAGCTTTGCTGCAG+GGG 0.516848 2_3:-29772242 Msa0287350:CDS
GGGATTCAAGCTTTGCTGCA+GGG 0.523093 2_3:-29772243 Msa0287350:CDS
TTGTGGAACACCGACGGGTA+AGG 0.523691 2_3:-29772506 Msa0287350:CDS
GAGGTTCAGCTGCAATTGAA+AGG 0.524042 2_3:-29772444 Msa0287350:CDS
TAGGGTACAGCTGCAACAAA+AGG 0.525576 2_3:-29775588 Msa0287350:CDS
GAAGCATTTGCAGCCACCAC+CGG 0.530483 2_3:+29774070 None:intergenic
TAGCAATTCAGCTCAAACTA+GGG 0.535704 2_3:-29772263 Msa0287350:CDS
ATGCATTGTGGAACACCGAC+GGG 0.546446 2_3:-29772511 Msa0287350:CDS
CGGGCAACAATTCTCTTACA+AGG 0.548925 2_3:-29773309 Msa0287350:intron
CACATTTGAAATGTTTGCTG+CGG 0.552359 2_3:-29774188 Msa0287350:CDS
AACCAAAAGTAGCATACGAC+GGG 0.561755 2_3:-29773328 Msa0287350:CDS
TAGCATAAAACCTAATACTC+CGG 0.568049 2_3:-29774089 Msa0287350:CDS
ACACTTCATATGAGCACCAA+CGG 0.584338 2_3:+29773961 None:intergenic
TTCAGCTGCAATTGAAAGGG+TGG 0.584405 2_3:-29772440 Msa0287350:CDS
AAAACCTAATACTCCGGTGG+TGG 0.587788 2_3:-29774083 Msa0287350:CDS
CTCGAGTTATGCCGGAGTGG+AGG 0.588750 2_3:-29772463 Msa0287350:CDS
AGGTTCAGCTGCAATTGAAA+GGG 0.592747 2_3:-29772443 Msa0287350:CDS
ATTGCATTCTCCTTACCCGT+CGG 0.595628 2_3:+29772496 None:intergenic
GATGCATTGTGGAACACCGA+CGG 0.596797 2_3:-29772512 Msa0287350:CDS
ATTTCAGGGCTGTTCTTCAG+GGG 0.600176 2_3:-29773114 Msa0287350:CDS
GTAATTGGATACAGTGCTGC+CGG 0.603510 2_3:-29775525 Msa0287350:CDS
ATTAGGTATAGGCTATGCAT+TGG 0.604258 2_3:-29772287 Msa0287350:CDS
TGTTATTGATCTATTGCTTG+AGG 0.621309 2_3:-29773939 Msa0287350:intron
AATGCATCTCTACATTATGG+TGG 0.626079 2_3:-29772310 Msa0287350:CDS
CTATATTACAGGTACAGAGA+TGG 0.627725 2_3:+29772201 None:intergenic
ACAGGTACAGAGATGGACAT+TGG 0.635671 2_3:+29772208 None:intergenic
CTCCACCATGACACAATGTG+AGG 0.637374 2_3:+29774214 None:intergenic
TCGAGCCTCACATTGTGTCA+TGG 0.643540 2_3:-29774219 Msa0287350:CDS
AAACACTCTAGCAAGTGAAG+CGG 0.657985 2_3:+29772345 None:intergenic
AATTCTCAAATGATACTGAG+AGG 0.667400 2_3:-29774015 Msa0287350:CDS
TTGCAGCTGAACCTCCACTC+CGG 0.668193 2_3:+29772452 None:intergenic
TTGATAGGAATGATGCATTG+TGG 0.674576 2_3:-29772523 Msa0287350:intron
AGCCTCACATTGTGTCATGG+TGG 0.676124 2_3:-29774216 Msa0287350:CDS
TTGCTCGAGTTATGCCGGAG+TGG 0.676679 2_3:-29772466 Msa0287350:CDS
AAACCAAAAGTAGCATACGA+CGG 0.681045 2_3:-29773329 Msa0287350:CDS
CATAAAACCTAATACTCCGG+TGG 0.696607 2_3:-29774086 Msa0287350:CDS
ACTTCATATGAGCACCAACG+GGG 0.702348 2_3:+29773963 None:intergenic
GCAAGATGGTTCTACCTACG+TGG 0.709144 2_3:-29773161 Msa0287350:intron
AAGTGGTAACAAAACCACGT+AGG 0.744385 2_3:+29773147 None:intergenic
CTTCATATGAGCACCAACGG+GGG 0.754340 2_3:+29773964 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATATTAATCCATTATATT+GGG + chr2_3:29773200-29773219 None:intergenic 10.0%
!! AAAATATTAATCCATTATAT+TGG + chr2_3:29773201-29773220 None:intergenic 10.0%
!!! ATTAATATTTTACTGAATAA+GGG - chr2_3:29773210-29773229 Msa0287350:intron 10.0%
!!! TATGAAAATTTTCATTGTTT+TGG - chr2_3:29772317-29772336 Msa0287350:CDS 15.0%
!! TGTTTAATTGTGTTAAAAAT+TGG - chr2_3:29772832-29772851 Msa0287350:intron 15.0%
!! GTTTAATTGTGTTAAAAATT+GGG - chr2_3:29772833-29772852 Msa0287350:intron 15.0%
!!! AACATTAAGTTTTGAATTTT+AGG - chr2_3:29772904-29772923 Msa0287350:intron 15.0%
!!! ATATTTGAATTTTTAGTTAG+TGG - chr2_3:29773165-29773184 Msa0287350:intron 15.0%
!!! GATTAATATTTTACTGAATA+AGG - chr2_3:29773209-29773228 Msa0287350:intron 15.0%
!!! TTTTATACTTTAGAGTTGAT+TGG - chr2_3:29772356-29772375 Msa0287350:CDS 20.0%
!! ATTAAAGTATGCTAAACAAT+TGG - chr2_3:29772970-29772989 Msa0287350:intron 20.0%
!! ACATGAAAAAAACGAAATAT+TGG + chr2_3:29773302-29773321 None:intergenic 20.0%
!! TTTACAGAGAAATAAACAAA+TGG + chr2_3:29773330-29773349 None:intergenic 20.0%
!!! TTCAAAATTGTGTTTTTAGA+AGG - chr2_3:29773380-29773399 Msa0287350:intron 20.0%
!!! TTTTAATTATTGTTAGTGAC+TGG - chr2_3:29774106-29774125 Msa0287350:CDS 20.0%
!! CAAATTGAAACTAATATGTT+TGG - chr2_3:29774276-29774295 Msa0287350:intron 20.0%
!!! TTTCTTCTACACTATTTTAA+TGG - chr2_3:29774797-29774816 Msa0287350:intron 20.0%
!! TGAACAAAGAAAAAAATTGA+TGG + chr2_3:29775363-29775382 None:intergenic 20.0%
!!! ATCAATTTTTTTCTTTGTTC+AGG - chr2_3:29775362-29775381 Msa0287350:intron 20.0%
!! TCAAAATTTGGATTTGAGTT+TGG - chr2_3:29772235-29772254 Msa0287350:CDS 25.0%
!! CAAAATTTGGATTTGAGTTT+GGG - chr2_3:29772236-29772255 Msa0287350:CDS 25.0%
! TGTCTATGCAATTATGATAA+TGG - chr2_3:29772293-29772312 Msa0287350:CDS 25.0%
!!! TTTTCATTGTTTTGGTTCTA+AGG - chr2_3:29772325-29772344 Msa0287350:CDS 25.0%
!! TAGATATATGTTAGTTTCCA+AGG - chr2_3:29772648-29772667 Msa0287350:intron 25.0%
!!! AGTTTTAAGTATGAAGTTCA+GGG + chr2_3:29772680-29772699 None:intergenic 25.0%
!! TGTCATGTTTGAAATTATAG+TGG - chr2_3:29772744-29772763 Msa0287350:intron 25.0%
! CACAATTAAACAATCATCAA+TGG + chr2_3:29772824-29772843 None:intergenic 25.0%
!! GTTTAGCATACTTTAATTTC+AGG + chr2_3:29772967-29772986 None:intergenic 25.0%
! GTTTCAAAAATTCCAAATCA+TGG + chr2_3:29773079-29773098 None:intergenic 25.0%
! GAACTATGATATAAAAGTAG+AGG - chr2_3:29773270-29773289 Msa0287350:intron 25.0%
!!! AAATTGTGTTTTTAGAAGGA+TGG - chr2_3:29773384-29773403 Msa0287350:intron 25.0%
! CATTAAGAAAGGATATAAAC+TGG - chr2_3:29773510-29773529 Msa0287350:intron 25.0%
!!! AGAGAAAGTACAAACTTTTT+GGG + chr2_3:29773615-29773634 None:intergenic 25.0%
! AATGGAAGAAATTCAAAAAC+TGG - chr2_3:29773937-29773956 Msa0287350:intron 25.0%
!! TGATGACTTTTAAGCTATAA+TGG + chr2_3:29774252-29774271 None:intergenic 25.0%
! AATGAAGTTCTCAATATGTT+TGG + chr2_3:29774409-29774428 None:intergenic 25.0%
! GTAAGCTATCTTAAGTAATA+TGG + chr2_3:29774472-29774491 None:intergenic 25.0%
! TCGTCAAAACCATATTAATT+TGG - chr2_3:29774520-29774539 Msa0287350:intron 25.0%
!!! ACCATATTAATTTGGTGTTT+TGG - chr2_3:29774528-29774547 Msa0287350:intron 25.0%
! ACCAAAACACCAAATTAATA+TGG + chr2_3:29774532-29774551 None:intergenic 25.0%
!! ATGAAGAAGTTATTTGCTAA+AGG + chr2_3:29774744-29774763 None:intergenic 25.0%
!! TACATAACATACATTAGTCT+CGG + chr2_3:29775055-29775074 None:intergenic 25.0%
! TGTATGTTATGTATGATTGT+AGG - chr2_3:29775062-29775081 Msa0287350:intron 25.0%
!!! GCATTTGTTATAACTTCATA+AGG + chr2_3:29775158-29775177 None:intergenic 25.0%
!! TTCAGAAGAGTATATTGAAA+AGG + chr2_3:29775211-29775230 None:intergenic 25.0%
! AAAGTTTATCACTGCAAATT+AGG + chr2_3:29775307-29775326 None:intergenic 25.0%
!!! TCTTTTTTGTTTGCTTTGTT+TGG - chr2_3:29775433-29775452 Msa0287350:intron 25.0%
! AAAAATGCATCTCTACATTA+TGG - chr2_3:29775667-29775686 Msa0287350:intron 25.0%
TAATGCTGCAGATCAAAATT+TGG - chr2_3:29772223-29772242 Msa0287350:CDS 30.0%
!! TACTTTAGAGTTGATTGGTT+TGG - chr2_3:29772361-29772380 Msa0287350:CDS 30.0%
!! ATTGGTTTGGTGTTTGTTTA+GGG - chr2_3:29772374-29772393 Msa0287350:CDS 30.0%
TGAGAAAAGAAAAGGAAGAA+AGG - chr2_3:29772421-29772440 Msa0287350:CDS 30.0%
GAGAAAAGAAAAGGAAGAAA+GGG - chr2_3:29772422-29772441 Msa0287350:CDS 30.0%
!!! GAGTTTTAAGTATGAAGTTC+AGG + chr2_3:29772681-29772700 None:intergenic 30.0%
AAAAGTTTGATATCCATCGA+AGG + chr2_3:29772703-29772722 None:intergenic 30.0%
! GAAATTATAGTGGAACAAGA+AGG - chr2_3:29772754-29772773 Msa0287350:intron 30.0%
!! AAATTGGGTTGACATTCATT+TGG - chr2_3:29772848-29772867 Msa0287350:intron 30.0%
ATTTGGTTGTGATTCCAAAT+TGG - chr2_3:29772865-29772884 Msa0287350:intron 30.0%
TTTGGTTGTGATTCCAAATT+GGG - chr2_3:29772866-29772885 Msa0287350:intron 30.0%
AACTTAATGTTGTTGCACAT+GGG + chr2_3:29772895-29772914 None:intergenic 30.0%
AAACTTAATGTTGTTGCACA+TGG + chr2_3:29772896-29772915 None:intergenic 30.0%
GTTCAAATGCACAATGTATT+TGG - chr2_3:29773117-29773136 Msa0287350:CDS 30.0%
!!! ATAAGGGTTTTGAAGTTTGT+AGG - chr2_3:29773226-29773245 Msa0287350:intron 30.0%
! TTTGAAGTTTGTAGGATTGA+TGG - chr2_3:29773234-29773253 Msa0287350:intron 30.0%
GCAACAATTTCTGATTCAAA+TGG + chr2_3:29773441-29773460 None:intergenic 30.0%
ATACATGGTGATATCATGTA+TGG - chr2_3:29773485-29773504 Msa0287350:intron 30.0%
CATGTATGGAACATTAAGAA+AGG - chr2_3:29773499-29773518 Msa0287350:intron 30.0%
! GGTACAAATGTTTGAAACTT+TGG - chr2_3:29773571-29773590 Msa0287350:intron 30.0%
! GTTTGAAACTTTGGATACTT+CGG - chr2_3:29773580-29773599 Msa0287350:intron 30.0%
!! AGTACAAACTTTTTGGGAAA+GGG + chr2_3:29773609-29773628 None:intergenic 30.0%
!! AAGTACAAACTTTTTGGGAA+AGG + chr2_3:29773610-29773629 None:intergenic 30.0%
!! CAGAGAAAGTACAAACTTTT+TGG + chr2_3:29773616-29773635 None:intergenic 30.0%
AAAGTTTGTACTTTCTCTGA+AGG - chr2_3:29773617-29773636 Msa0287350:intron 30.0%
TCTGAAGGACTAATAGATTT+AGG - chr2_3:29773632-29773651 Msa0287350:intron 30.0%
! GGTTTAATGAGTTATTTCAG+TGG - chr2_3:29773653-29773672 Msa0287350:intron 30.0%
TAGCATAAAACCTAATACTC+CGG - chr2_3:29773891-29773910 Msa0287350:intron 30.0%
AATTCTCAAATGATACTGAG+AGG - chr2_3:29773965-29773984 Msa0287350:CDS 30.0%
TGTTATTGATCTATTGCTTG+AGG - chr2_3:29774041-29774060 Msa0287350:CDS 30.0%
! TCTATTGCTTGAGGTAATTT+TGG - chr2_3:29774050-29774069 Msa0287350:CDS 30.0%
TAATTATTGTTAGTGACTGG+CGG - chr2_3:29774109-29774128 Msa0287350:CDS 30.0%
CATACTTCATTTATTTGCTC+TGG + chr2_3:29774583-29774602 None:intergenic 30.0%
AAGTATGCTATGTTGATATG+AGG - chr2_3:29774596-29774615 Msa0287350:intron 30.0%
!! AAGATGTTTTTGAAAGTCTG+AGG - chr2_3:29774625-29774644 Msa0287350:intron 30.0%
CTCTTACAAGGTAATCTTTA+CGG - chr2_3:29774683-29774702 Msa0287350:intron 30.0%
TCTTACAAGGTAATCTTTAC+GGG - chr2_3:29774684-29774703 Msa0287350:intron 30.0%
!!! ACACTATTTTAATGGCAAGA+TGG - chr2_3:29774805-29774824 Msa0287350:intron 30.0%
ATTGAGATTTGTGTTGAAAG+TGG - chr2_3:29774904-29774923 Msa0287350:intron 30.0%
ATGTATGATTGTAGGATTGT+AGG - chr2_3:29775070-29775089 Msa0287350:intron 30.0%
!! GACTCATTTGGTGTTTATTT+GGG - chr2_3:29775120-29775139 Msa0287350:intron 30.0%
!! ACTCATTTGGTGTTTATTTG+GGG - chr2_3:29775121-29775140 Msa0287350:intron 30.0%
!! TTTGCTTTGTTTGGATTGAT+AGG - chr2_3:29775442-29775461 Msa0287350:intron 30.0%
! TGGGAAATTCAAGTTCTACA+AGG - chr2_3:29772255-29772274 Msa0287350:CDS 35.0%
!! GATTGGTTTGGTGTTTGTTT+AGG - chr2_3:29772373-29772392 Msa0287350:CDS 35.0%
! TGTGCTTTCCTCACAATTTT+TGG - chr2_3:29772485-29772504 Msa0287350:CDS 35.0%
!!! TTCCTCACAATTTTTGGAGT+TGG - chr2_3:29772491-29772510 Msa0287350:CDS 35.0%
!!! TTTTCTCAGCTTTGGAGATT+TGG - chr2_3:29772524-29772543 Msa0287350:intron 35.0%
!! TTTCTCAGCTTTGGAGATTT+GGG - chr2_3:29772525-29772544 Msa0287350:intron 35.0%
CATACTTAAAACTCCTTCGA+TGG - chr2_3:29772687-29772706 Msa0287350:intron 35.0%
!! ATTGTTTGTTAGCCTTTGCT+TGG - chr2_3:29772792-29772811 Msa0287350:intron 35.0%
CCATTGAACATGTTCATCAA+AGG + chr2_3:29773013-29773032 None:intergenic 35.0%
CCTTTGATGAACATGTTCAA+TGG - chr2_3:29773010-29773029 Msa0287350:intron 35.0%
ATGTTCAATGGCATGTTACA+TGG - chr2_3:29773022-29773041 Msa0287350:intron 35.0%
!! CTTGATGATGAACCATGATT+TGG - chr2_3:29773064-29773083 Msa0287350:intron 35.0%
GAACAAAATATGACTGTGAG+TGG + chr2_3:29773101-29773120 None:intergenic 35.0%
! GACTAAAGTGCCCAATATAA+TGG - chr2_3:29773187-29773206 Msa0287350:intron 35.0%
TCAGAAATTGTTGCCAAGTT+TGG - chr2_3:29773447-29773466 Msa0287350:intron 35.0%
CAGAAATTGTTGCCAAGTTT+GGG - chr2_3:29773448-29773467 Msa0287350:intron 35.0%
ACAGCAGCACAATAATCTTA+AGG - chr2_3:29773537-29773556 Msa0287350:intron 35.0%
AATCTTAAGGAGACAGAAAC+AGG - chr2_3:29773550-29773569 Msa0287350:intron 35.0%
! CACATTTGAAATGTTTGCTG+CGG - chr2_3:29773792-29773811 Msa0287350:intron 35.0%
!! TGATTTTGATGCATGAGATG+AGG - chr2_3:29774143-29774162 Msa0287350:CDS 35.0%
!! GATTTTGATGCATGAGATGA+GGG - chr2_3:29774144-29774163 Msa0287350:CDS 35.0%
TAACCTCAAACTTAACAGCT+AGG + chr2_3:29774223-29774242 None:intergenic 35.0%
TGAAGCTTCAACAAAATCAC+AGG + chr2_3:29774334-29774353 None:intergenic 35.0%
AGTTCTCAATATGTTTGGCT+GGG + chr2_3:29774404-29774423 None:intergenic 35.0%
AAGTTCTCAATATGTTTGGC+TGG + chr2_3:29774405-29774424 None:intergenic 35.0%
!!! TTTTGGTTTGCTGATAGACA+CGG - chr2_3:29774545-29774564 Msa0287350:intron 35.0%
AAACCAAAAGTAGCATACGA+CGG - chr2_3:29774651-29774670 Msa0287350:intron 35.0%
!! GTTTTGTTACCACTTTTGGA+AGG - chr2_3:29774841-29774860 Msa0287350:intron 35.0%
!! ACTTTTGGAAGGAGATTTCA+GGG - chr2_3:29774852-29774871 Msa0287350:intron 35.0%
!! GGACTCATTTGGTGTTTATT+TGG - chr2_3:29775119-29775138 Msa0287350:intron 35.0%
TGTTCCATTAGTGCAGTATT+AGG - chr2_3:29775249-29775268 Msa0287350:intron 35.0%
AAGTCCTAATACTGCACTAA+TGG + chr2_3:29775256-29775275 None:intergenic 35.0%
TTTGTTCAGGACTATTGAGT+CGG - chr2_3:29775375-29775394 Msa0287350:intron 35.0%
TTGATAGGAATGATGCATTG+TGG - chr2_3:29775457-29775476 Msa0287350:CDS 35.0%
! TAGTAGGGTTTGAAGTAATC+CGG + chr2_3:29775584-29775603 None:intergenic 35.0%
CTTCAAACCCTACTATTTAC+CGG - chr2_3:29775589-29775608 Msa0287350:intron 35.0%
TTCAAACCCTACTATTTACC+GGG - chr2_3:29775590-29775609 Msa0287350:intron 35.0%
AATGCATCTCTACATTATGG+TGG - chr2_3:29775670-29775689 Msa0287350:intron 35.0%
!! TCTCTACATTATGGTGGATT+AGG - chr2_3:29775676-29775695 Msa0287350:intron 35.0%
!! CATTATGGTGGATTAGGTAT+AGG - chr2_3:29775682-29775701 Msa0287350:intron 35.0%
ATTAGGTATAGGCTATGCAT+TGG - chr2_3:29775693-29775712 Msa0287350:intron 35.0%
TAGCAATTCAGCTCAAACTA+GGG - chr2_3:29775717-29775736 Msa0287350:intron 35.0%
CTATATTACAGGTACAGAGA+TGG + chr2_3:29775782-29775801 None:intergenic 35.0%
!! GGTGTTGCTGAGAAAAGAAA+AGG - chr2_3:29772413-29772432 Msa0287350:CDS 40.0%
AGAAAAGGAAGAAAGGGTCT+AGG - chr2_3:29772428-29772447 Msa0287350:CDS 40.0%
GAAAAGGAAGAAAGGGTCTA+GGG - chr2_3:29772429-29772448 Msa0287350:CDS 40.0%
CTCCAACTCCAAAAATTGTG+AGG + chr2_3:29772496-29772515 None:intergenic 40.0%
!!! CTCACAATTTTTGGAGTTGG+AGG - chr2_3:29772494-29772513 Msa0287350:CDS 40.0%
!!! AATTTTTGGAGTTGGAGGAG+CGG - chr2_3:29772499-29772518 Msa0287350:CDS 40.0%
AGTGAGATAGGCAAAGCATA+TGG - chr2_3:29772590-29772609 Msa0287350:intron 40.0%
CAATGGAAGTAACCAAGCAA+AGG + chr2_3:29772807-29772826 None:intergenic 40.0%
! GATTGATGGTTCAGTGAGAT+TGG - chr2_3:29773248-29773267 Msa0287350:intron 40.0%
TTCATCACTATATGCAGCGT+TGG - chr2_3:29773696-29773715 Msa0287350:intron 40.0%
CATAAAACCTAATACTCCGG+TGG - chr2_3:29773894-29773913 Msa0287350:intron 40.0%
GCTGCAAATGCTTCATCAAA+TGG - chr2_3:29773919-29773938 Msa0287350:intron 40.0%
ACACTTCATATGAGCACCAA+CGG + chr2_3:29774022-29774041 None:intergenic 40.0%
AAGCCTAGCTGTTAAGTTTG+AGG - chr2_3:29774217-29774236 Msa0287350:CDS 40.0%
TCCTAATCGTGGACTTTCAT+CGG + chr2_3:29774494-29774513 None:intergenic 40.0%
GACGAATCAATTCCTAATCG+TGG + chr2_3:29774505-29774524 None:intergenic 40.0%
AACCAAAAGTAGCATACGAC+GGG - chr2_3:29774652-29774671 Msa0287350:intron 40.0%
AAGTGGTAACAAAACCACGT+AGG + chr2_3:29774836-29774855 None:intergenic 40.0%
!!! CGTGGTTTTGTTACCACTTT+TGG - chr2_3:29774837-29774856 Msa0287350:intron 40.0%
CTGAAATCTCCTTCCAAAAG+TGG + chr2_3:29774853-29774872 None:intergenic 40.0%
!! CACTTTTGGAAGGAGATTTC+AGG - chr2_3:29774851-29774870 Msa0287350:intron 40.0%
CAATGGTAGAAACAAATCCC+CGG - chr2_3:29775009-29775028 Msa0287350:intron 40.0%
! ATACATTAGTCTCGGCATTG+AGG + chr2_3:29775047-29775066 None:intergenic 40.0%
CTGATGTGGAGGAATTTGAT+GGG - chr2_3:29775098-29775117 Msa0287350:intron 40.0%
GGAATTTGATGGGACTCATT+TGG - chr2_3:29775108-29775127 Msa0287350:intron 40.0%
!! ATTTGGTGTTTATTTGGGGC+TGG - chr2_3:29775125-29775144 Msa0287350:intron 40.0%
TTGTTCAGGACTATTGAGTC+GGG - chr2_3:29775376-29775395 Msa0287350:intron 40.0%
AGGTTCAGCTGCAATTGAAA+GGG - chr2_3:29775537-29775556 Msa0287350:CDS 40.0%
TGCAATTGAAAGGGTGGTTA+AGG - chr2_3:29775546-29775565 Msa0287350:CDS 40.0%
CTTTGTCCCGGTAAATAGTA+GGG + chr2_3:29775599-29775618 None:intergenic 40.0%
TCTTTGTCCCGGTAAATAGT+AGG + chr2_3:29775600-29775619 None:intergenic 40.0%
AAACACTCTAGCAAGTGAAG+CGG + chr2_3:29775638-29775657 None:intergenic 40.0%
CTAGCAATTCAGCTCAAACT+AGG - chr2_3:29775716-29775735 Msa0287350:intron 40.0%
TAGGGTACAGCTGCAACAAA+AGG - chr2_3:29772392-29772411 Msa0287350:CDS 45.0%
! AAGGGTCTAGGGAGTGTAAT+TGG - chr2_3:29772440-29772459 Msa0287350:CDS 45.0%
GTAATTGGATACAGTGCTGC+CGG - chr2_3:29772455-29772474 Msa0287350:CDS 45.0%
! TGAGACTGTGTCACTCAACT+TGG + chr2_3:29772570-29772589 None:intergenic 45.0%
GACACAGTCTCAAGTGAGAT+AGG - chr2_3:29772578-29772597 Msa0287350:intron 45.0%
GAAGTTCAGGGTTTGATCCT+TGG + chr2_3:29772668-29772687 None:intergenic 45.0%
TGCACATGGGAATCCCAATT+TGG + chr2_3:29772882-29772901 None:intergenic 45.0%
! GTAGCGCTGAAGAAGATACA+TGG - chr2_3:29773470-29773489 Msa0287350:intron 45.0%
TTGCTGCGGAAAAGCTAGAT+AGG - chr2_3:29773806-29773825 Msa0287350:intron 45.0%
AGAATTGCGTCGAGCAAAGT+TGG - chr2_3:29773868-29773887 Msa0287350:intron 45.0%
AAAACCTAATACTCCGGTGG+TGG - chr2_3:29773897-29773916 Msa0287350:intron 45.0%
ACTTCATATGAGCACCAACG+GGG + chr2_3:29774020-29774039 None:intergenic 45.0%
CACTTCATATGAGCACCAAC+GGG + chr2_3:29774021-29774040 None:intergenic 45.0%
GTTTGGCTGAACAGTGAGTT+AGG - chr2_3:29774293-29774312 Msa0287350:intron 45.0%
TCTCAATATGTTTGGCTGGG+CGG + chr2_3:29774401-29774420 None:intergenic 45.0%
ACCGATGAAAGTCCACGATT+AGG - chr2_3:29774490-29774509 Msa0287350:intron 45.0%
CGGGCAACAATTCTCTTACA+AGG - chr2_3:29774671-29774690 Msa0287350:intron 45.0%
AGATTTCAGGGCTGTTCTTC+AGG - chr2_3:29774864-29774883 Msa0287350:intron 45.0%
GATTTCAGGGCTGTTCTTCA+GGG - chr2_3:29774865-29774884 Msa0287350:intron 45.0%
ATTTCAGGGCTGTTCTTCAG+GGG - chr2_3:29774866-29774885 Msa0287350:intron 45.0%
CGTGTATTCTCTGCTCACAA+TGG - chr2_3:29774992-29775011 Msa0287350:intron 45.0%
TAGAAACAAATCCCCGGAGT+TGG - chr2_3:29775015-29775034 Msa0287350:intron 45.0%
AGAAACAAATCCCCGGAGTT+GGG - chr2_3:29775016-29775035 Msa0287350:intron 45.0%
GATTGTAGGATGTCCTGATG+TGG - chr2_3:29775084-29775103 Msa0287350:intron 45.0%
CCATCAAATTCCTCCACATC+AGG + chr2_3:29775100-29775119 None:intergenic 45.0%
CCTGATGTGGAGGAATTTGA+TGG - chr2_3:29775097-29775116 Msa0287350:intron 45.0%
ATTGCATTCTCCTTACCCGT+CGG + chr2_3:29775487-29775506 None:intergenic 45.0%
CAACATTGCTCGAGTTATGC+CGG - chr2_3:29775509-29775528 Msa0287350:CDS 45.0%
GAGGTTCAGCTGCAATTGAA+AGG - chr2_3:29775536-29775555 Msa0287350:CDS 45.0%
TTCAGCTGCAATTGAAAGGG+TGG - chr2_3:29775540-29775559 Msa0287350:CDS 45.0%
TGAAGTAATCCGGCAATAGC+TGG + chr2_3:29775574-29775593 None:intergenic 45.0%
ACGTCTAGATCTCTTTGTCC+CGG + chr2_3:29775611-29775630 None:intergenic 45.0%
ACAGGTACAGAGATGGACAT+TGG + chr2_3:29775775-29775794 None:intergenic 45.0%
! GAGGAAAGCACAAACGCAAC+CGG + chr2_3:29772477-29772496 None:intergenic 50.0%
!! GAGCGGCTTTTTCTCAGCTT+TGG - chr2_3:29772516-29772535 Msa0287350:CDS 50.0%
TCTTCAGCGCTACCCAAACT+TGG + chr2_3:29773463-29773482 None:intergenic 50.0%
TCGAGCCTCACATTGTGTCA+TGG - chr2_3:29773761-29773780 Msa0287350:intron 50.0%
AGCCTCACATTGTGTCATGG+TGG - chr2_3:29773764-29773783 Msa0287350:intron 50.0%
CTCCACCATGACACAATGTG+AGG + chr2_3:29773769-29773788 None:intergenic 50.0%
CTTCATATGAGCACCAACGG+GGG + chr2_3:29774019-29774038 None:intergenic 50.0%
TGGCTGAACAGTGAGTTAGG+CGG - chr2_3:29774296-29774315 Msa0287350:intron 50.0%
TGAGTTAGGCGGAATCACTG+TGG - chr2_3:29774307-29774326 Msa0287350:intron 50.0%
!!! TGCCCGTCGTATGCTACTTT+TGG + chr2_3:29774657-29774676 None:intergenic 50.0%
! GCAAGATGGTTCTACCTACG+TGG - chr2_3:29774819-29774838 Msa0287350:intron 50.0%
ATTGAGGTCCAACCCAACTC+CGG + chr2_3:29775031-29775050 None:intergenic 50.0%
TGTAGGATGTCCTGATGTGG+AGG - chr2_3:29775087-29775106 Msa0287350:intron 50.0%
GATGCATTGTGGAACACCGA+CGG - chr2_3:29775468-29775487 Msa0287350:CDS 50.0%
ATGCATTGTGGAACACCGAC+GGG - chr2_3:29775469-29775488 Msa0287350:CDS 50.0%
! GTTAAGGCACCAGCTATTGC+CGG - chr2_3:29775562-29775581 Msa0287350:CDS 50.0%
AGGGATTCAAGCTTTGCTGC+AGG - chr2_3:29775736-29775755 Msa0287350:intron 50.0%
GGGATTCAAGCTTTGCTGCA+GGG - chr2_3:29775737-29775756 Msa0287350:intron 50.0%
GGATTCAAGCTTTGCTGCAG+GGG - chr2_3:29775738-29775757 Msa0287350:intron 50.0%
! GAAGCATTTGCAGCCACCAC+CGG + chr2_3:29773913-29773932 None:intergenic 55.0%
AATATACGCGAAGCCCCCGT+TGG - chr2_3:29774003-29774022 Msa0287350:CDS 55.0%
ACAAATCCCCGGAGTTGGGT+TGG - chr2_3:29775020-29775039 Msa0287350:intron 55.0%
TTGAGGTCCAACCCAACTCC+GGG + chr2_3:29775030-29775049 None:intergenic 55.0%
TTGTGGAACACCGACGGGTA+AGG - chr2_3:29775474-29775493 Msa0287350:CDS 55.0%
TTGCTCGAGTTATGCCGGAG+TGG - chr2_3:29775514-29775533 Msa0287350:CDS 55.0%
TTGCAGCTGAACCTCCACTC+CGG + chr2_3:29775531-29775550 None:intergenic 55.0%
! GCAGCCACCACCGGAGTATT+AGG + chr2_3:29773904-29773923 None:intergenic 60.0%
TGAGGTCCAACCCAACTCCG+GGG + chr2_3:29775029-29775048 None:intergenic 60.0%
CTCGAGTTATGCCGGAGTGG+AGG - chr2_3:29775517-29775536 Msa0287350:CDS 60.0%
Chromosome Type Strat End Strand Name
chr2_3 gene 29772201 29775801 29772201 ID=Msa0287350;Name=Msa0287350
chr2_3 mRNA 29772201 29775801 29772201 ID=Msa0287350-mRNA-1;Parent=Msa0287350;Name=Msa0287350-mRNA-1;_AED=0.18;_eAED=0.22;_QI=0|0|0.16|0.83|1|1|6|0|322
chr2_3 exon 29775781 29775801 29775781 ID=Msa0287350-mRNA-1:exon:10391;Parent=Msa0287350-mRNA-1
chr2_3 exon 29775456 29775607 29775456 ID=Msa0287350-mRNA-1:exon:10390;Parent=Msa0287350-mRNA-1
chr2_3 exon 29773940 29774243 29773940 ID=Msa0287350-mRNA-1:exon:10389;Parent=Msa0287350-mRNA-1
chr2_3 exon 29773310 29773361 29773310 ID=Msa0287350-mRNA-1:exon:10388;Parent=Msa0287350-mRNA-1
chr2_3 exon 29773077 29773178 29773077 ID=Msa0287350-mRNA-1:exon:10387;Parent=Msa0287350-mRNA-1
chr2_3 exon 29772201 29772538 29772201 ID=Msa0287350-mRNA-1:exon:10386;Parent=Msa0287350-mRNA-1
chr2_3 CDS 29775781 29775801 29775781 ID=Msa0287350-mRNA-1:cds;Parent=Msa0287350-mRNA-1
chr2_3 CDS 29775456 29775607 29775456 ID=Msa0287350-mRNA-1:cds;Parent=Msa0287350-mRNA-1
chr2_3 CDS 29773940 29774243 29773940 ID=Msa0287350-mRNA-1:cds;Parent=Msa0287350-mRNA-1
chr2_3 CDS 29773310 29773361 29773310 ID=Msa0287350-mRNA-1:cds;Parent=Msa0287350-mRNA-1
chr2_3 CDS 29773077 29773178 29773077 ID=Msa0287350-mRNA-1:cds;Parent=Msa0287350-mRNA-1
chr2_3 CDS 29772201 29772538 29772201 ID=Msa0287350-mRNA-1:cds;Parent=Msa0287350-mRNA-1
Gene Sequence

>Msa0287350

ATGACAGAATCATATCATCAGGGTACAGCTGCAACAAAAGGTGTTGCTGAGAAAAGAAAAGGAAGAAAGGGTCTAGGGAGTGTAATTGGATACAGTGCTGCCGGTTGCGTTTGTGCTTTCCTCACAATTTTTGGAGTTGGAGGAGCGGCTTTTTCTCAGCTTTGGAGATTTGGTGTCGAGCCTCACATTGTGTCATGGTGGAGAAGCACATTTGAAATGTTTGCTGCGGAAAAGCTAGATAGGTTCAAGAAACAGCAAGAGAAGTGTCAATCGACACTCTTCAGAATTGCGTCGAGCAAAGTTGGTAGCATAAAACCTAATACTCCGGTGGTGGCTGCAAATGCTTCATCAAATGGAAGAAATTCAAAAACTGGTGTTAAATTCTCAAATGATACTGAGAGGCTTCAGCAGATTAATAATATACGCGAAGCCCCCGTTGGTGCTCATATGAAGTGTGTTATTGATCTATTGCTTGAGTCTGAGGAAAAAACCAAAAGTAGCATACGACGGGCAACAATTCTCTTACAAGATGGTTCTACCTACGTGGTTTTGTTACCACTTTTGGAAGGAGATTTCAGGGCTGTTCTTCAGGGGAATGATCAAAATGAAATTGAGATTTGTGTTGAAAGTGGAATGATGCATTGTGGAACACCGACGGGTAAGGAGAATGCAATTGCAACATTGCTCGAGTTATGCCGGAGTGGAGGTTCAGCTGCAATTGAAAGGGTGGTTAAGGCACCAGCTATTGCCGGATTACTTCAAACCCTACTATTTACCGGGACAAAGAGATCTAGACGTAAAGCCGCTTCACTTGCTAGAGTGTTTCAGAGATGTAAAAATGCATCTCTACATTATGGTGGATTAGGTATAGGCTATGCATTGGCTAGCAATTCAGCTCAAACTAGGGATTCAAGCTTTGCTGCAGGGGATGTTTCAGTACCAATGTCCATCTCTGTACCTGTAATATAG

Protein sequence

>Msa0287350

MTESYHQGTAATKGVAEKRKGRKGLGSVIGYSAAGCVCAFLTIFGVGGAAFSQLWRFGVEPHIVSWWRSTFEMFAAEKLDRFKKQQEKCQSTLFRIASSKVGSIKPNTPVVAANASSNGRNSKTGVKFSNDTERLQQINNIREAPVGAHMKCVIDLLLESEEKTKSSIRRATILLQDGSTYVVLLPLLEGDFRAVLQGNDQNEIEICVESGMMHCGTPTGKENAIATLLELCRSGGSAAIERVVKAPAIAGLLQTLLFTGTKRSRRKAASLARVFQRCKNASLHYGGLGIGYALASNSAQTRDSSFAAGDVSVPMSISVPVI*