Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0287350 | AES79080.2 | 62.270 | 326 | 30 | 6 | 8 | 262 | 76 | 379 | 4.45e-117 | 353 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0287350 | sp|Q9C7R6|PUB17_ARATH | 65.766 | 111 | 33 | 2 | 211 | 321 | 621 | 726 | 2.43e-36 | 141 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0287350 | G7L051 | 62.270 | 326 | 30 | 6 | 8 | 262 | 76 | 379 | 2.12e-117 | 353 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0287350 | Msa0337510 | 0.800829 | 1.199268e-48 | -8.615850e-47 |
Msa0287350 | Msa0414020 | 0.809462 | 1.869949e-50 | -8.615850e-47 |
Msa0287350 | Msa0832040 | 0.810314 | 1.225963e-50 | -8.615850e-47 |
Msa0287350 | Msa0990830 | 0.807987 | 3.863770e-50 | -8.615850e-47 |
Msa0287350 | Msa1059310 | 0.802071 | 6.674473e-49 | -8.615850e-47 |
Msa0287350 | Msa1226100 | 0.803826 | 2.896409e-49 | -8.615850e-47 |
Msa0287350 | Msa1320580 | 0.803240 | 3.831667e-49 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0287350 | MtrunA17_Chr2g0284461 | 91.964 | 112 | 9 | 0 | 211 | 322 | 609 | 720 | 1.04e-63 | 214 |
Msa0287350 | MtrunA17_Chr3g0139641 | 89.583 | 96 | 10 | 0 | 213 | 308 | 37 | 132 | 1.25e-54 | 175 |
Msa0287350 | MtrunA17_Chr8g0386391 | 83.333 | 66 | 11 | 0 | 73 | 138 | 1 | 66 | 2.91e-31 | 112 |
Msa0287350 | MtrunA17_Chr7g0235141 | 88.679 | 53 | 6 | 0 | 210 | 262 | 3 | 55 | 2.71e-25 | 96.3 |
Msa0287350 | MtrunA17_Chr2g0314681 | 78.333 | 60 | 4 | 1 | 8 | 58 | 133 | 192 | 2.05e-20 | 90.1 |
Msa0287350 | MtrunA17_Chr5g0397801 | 56.471 | 85 | 24 | 1 | 78 | 162 | 6 | 77 | 1.79e-19 | 86.7 |
Msa0287350 | MtrunA17_Chr5g0447201 | 46.602 | 103 | 45 | 3 | 176 | 278 | 118 | 210 | 1.39e-15 | 77.4 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0287350 | AT1G29340.1 | 65.766 | 111 | 33 | 2 | 211 | 321 | 621 | 726 | 2.47e-37 | 141 |
Msa0287350 | AT4G20330.1 | 54.023 | 87 | 40 | 0 | 73 | 159 | 1 | 87 | 6.80e-17 | 80.1 |
Msa0287350 | AT1G78620.2 | 68.852 | 61 | 10 | 1 | 7 | 58 | 150 | 210 | 1.14e-15 | 77.0 |
Msa0287350 | AT1G78620.1 | 70.000 | 60 | 9 | 1 | 8 | 58 | 142 | 201 | 1.30e-15 | 77.0 |
Find 75 sgRNAs with CRISPR-Local
Find 229 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
AGATTTCAGGGCTGTTCTTC+AGG | 0.254721 | 2_3:-29773116 | Msa0287350:CDS |
TTTCTCAGCTTTGGAGATTT+GGG | 0.266040 | 2_3:-29775455 | Msa0287350:intron |
GCAGCCACCACCGGAGTATT+AGG | 0.268237 | 2_3:+29774079 | None:intergenic |
TGCCCGTCGTATGCTACTTT+TGG | 0.310121 | 2_3:+29773326 | None:intergenic |
CTTCAAACCCTACTATTTAC+CGG | 0.331149 | 2_3:-29772391 | Msa0287350:CDS |
AAGGGTCTAGGGAGTGTAAT+TGG | 0.341160 | 2_3:-29775540 | Msa0287350:CDS |
TCTCTACATTATGGTGGATT+AGG | 0.347612 | 2_3:-29772304 | Msa0287350:CDS |
TCTTTGTCCCGGTAAATAGT+AGG | 0.375645 | 2_3:+29772383 | None:intergenic |
AGAAAAGGAAGAAAGGGTCT+AGG | 0.409567 | 2_3:-29775552 | Msa0287350:CDS |
TGCAATTGAAAGGGTGGTTA+AGG | 0.415531 | 2_3:-29772434 | Msa0287350:CDS |
GTATTATACCACTATATTAC+AGG | 0.417054 | 2_3:+29772190 | None:intergenic |
CTAGCAATTCAGCTCAAACT+AGG | 0.421052 | 2_3:-29772264 | Msa0287350:CDS |
CATTATGGTGGATTAGGTAT+AGG | 0.433822 | 2_3:-29772298 | Msa0287350:CDS |
GCTGCAAATGCTTCATCAAA+TGG | 0.435679 | 2_3:-29774061 | Msa0287350:CDS |
GTTAAGGCACCAGCTATTGC+CGG | 0.446225 | 2_3:-29772418 | Msa0287350:CDS |
GGTGTTGCTGAGAAAAGAAA+AGG | 0.457328 | 2_3:-29775567 | Msa0287350:CDS |
TAGTAGGGTTTGAAGTAATC+CGG | 0.457922 | 2_3:+29772399 | None:intergenic |
CACTTCATATGAGCACCAAC+GGG | 0.460795 | 2_3:+29773962 | None:intergenic |
TTGCTGCGGAAAAGCTAGAT+AGG | 0.464737 | 2_3:-29774174 | Msa0287350:CDS |
GAAAAGGAAGAAAGGGTCTA+GGG | 0.465376 | 2_3:-29775551 | Msa0287350:CDS |
GATTTCAGGGCTGTTCTTCA+GGG | 0.470284 | 2_3:-29773115 | Msa0287350:CDS |
CTTTGTCCCGGTAAATAGTA+GGG | 0.471948 | 2_3:+29772384 | None:intergenic |
CTGAAATCTCCTTCCAAAAG+TGG | 0.478814 | 2_3:+29773130 | None:intergenic |
TGAGAAAAGAAAAGGAAGAA+AGG | 0.485302 | 2_3:-29775559 | Msa0287350:CDS |
GAGAAAAGAAAAGGAAGAAA+GGG | 0.485330 | 2_3:-29775558 | Msa0287350:CDS |
AGGGATTCAAGCTTTGCTGC+AGG | 0.485529 | 2_3:-29772244 | Msa0287350:CDS |
AATGACAGAATCATATCATC+AGG | 0.486126 | 2_3:-29775780 | Msa0287350:intron |
TGAAGTAATCCGGCAATAGC+TGG | 0.491668 | 2_3:+29772409 | None:intergenic |
AGAATTGCGTCGAGCAAAGT+TGG | 0.493711 | 2_3:-29774112 | Msa0287350:CDS |
GAGGAAAGCACAAACGCAAC+CGG | 0.496460 | 2_3:+29775506 | None:intergenic |
CAACATTGCTCGAGTTATGC+CGG | 0.497466 | 2_3:-29772471 | Msa0287350:CDS |
TTCAAACCCTACTATTTACC+GGG | 0.497622 | 2_3:-29772390 | Msa0287350:CDS |
ACGTCTAGATCTCTTTGTCC+CGG | 0.502949 | 2_3:+29772372 | None:intergenic |
TCTCTGTACCTGTAATATAG+TGG | 0.503843 | 2_3:-29772198 | None:intergenic |
ATTGAGATTTGTGTTGAAAG+TGG | 0.506532 | 2_3:-29773076 | Msa0287350:intron |
GGATTCAAGCTTTGCTGCAG+GGG | 0.516848 | 2_3:-29772242 | Msa0287350:CDS |
GGGATTCAAGCTTTGCTGCA+GGG | 0.523093 | 2_3:-29772243 | Msa0287350:CDS |
TTGTGGAACACCGACGGGTA+AGG | 0.523691 | 2_3:-29772506 | Msa0287350:CDS |
GAGGTTCAGCTGCAATTGAA+AGG | 0.524042 | 2_3:-29772444 | Msa0287350:CDS |
TAGGGTACAGCTGCAACAAA+AGG | 0.525576 | 2_3:-29775588 | Msa0287350:CDS |
GAAGCATTTGCAGCCACCAC+CGG | 0.530483 | 2_3:+29774070 | None:intergenic |
TAGCAATTCAGCTCAAACTA+GGG | 0.535704 | 2_3:-29772263 | Msa0287350:CDS |
ATGCATTGTGGAACACCGAC+GGG | 0.546446 | 2_3:-29772511 | Msa0287350:CDS |
CGGGCAACAATTCTCTTACA+AGG | 0.548925 | 2_3:-29773309 | Msa0287350:intron |
CACATTTGAAATGTTTGCTG+CGG | 0.552359 | 2_3:-29774188 | Msa0287350:CDS |
AACCAAAAGTAGCATACGAC+GGG | 0.561755 | 2_3:-29773328 | Msa0287350:CDS |
TAGCATAAAACCTAATACTC+CGG | 0.568049 | 2_3:-29774089 | Msa0287350:CDS |
ACACTTCATATGAGCACCAA+CGG | 0.584338 | 2_3:+29773961 | None:intergenic |
TTCAGCTGCAATTGAAAGGG+TGG | 0.584405 | 2_3:-29772440 | Msa0287350:CDS |
AAAACCTAATACTCCGGTGG+TGG | 0.587788 | 2_3:-29774083 | Msa0287350:CDS |
CTCGAGTTATGCCGGAGTGG+AGG | 0.588750 | 2_3:-29772463 | Msa0287350:CDS |
AGGTTCAGCTGCAATTGAAA+GGG | 0.592747 | 2_3:-29772443 | Msa0287350:CDS |
ATTGCATTCTCCTTACCCGT+CGG | 0.595628 | 2_3:+29772496 | None:intergenic |
GATGCATTGTGGAACACCGA+CGG | 0.596797 | 2_3:-29772512 | Msa0287350:CDS |
ATTTCAGGGCTGTTCTTCAG+GGG | 0.600176 | 2_3:-29773114 | Msa0287350:CDS |
GTAATTGGATACAGTGCTGC+CGG | 0.603510 | 2_3:-29775525 | Msa0287350:CDS |
ATTAGGTATAGGCTATGCAT+TGG | 0.604258 | 2_3:-29772287 | Msa0287350:CDS |
TGTTATTGATCTATTGCTTG+AGG | 0.621309 | 2_3:-29773939 | Msa0287350:intron |
AATGCATCTCTACATTATGG+TGG | 0.626079 | 2_3:-29772310 | Msa0287350:CDS |
CTATATTACAGGTACAGAGA+TGG | 0.627725 | 2_3:+29772201 | None:intergenic |
ACAGGTACAGAGATGGACAT+TGG | 0.635671 | 2_3:+29772208 | None:intergenic |
CTCCACCATGACACAATGTG+AGG | 0.637374 | 2_3:+29774214 | None:intergenic |
TCGAGCCTCACATTGTGTCA+TGG | 0.643540 | 2_3:-29774219 | Msa0287350:CDS |
AAACACTCTAGCAAGTGAAG+CGG | 0.657985 | 2_3:+29772345 | None:intergenic |
AATTCTCAAATGATACTGAG+AGG | 0.667400 | 2_3:-29774015 | Msa0287350:CDS |
TTGCAGCTGAACCTCCACTC+CGG | 0.668193 | 2_3:+29772452 | None:intergenic |
TTGATAGGAATGATGCATTG+TGG | 0.674576 | 2_3:-29772523 | Msa0287350:intron |
AGCCTCACATTGTGTCATGG+TGG | 0.676124 | 2_3:-29774216 | Msa0287350:CDS |
TTGCTCGAGTTATGCCGGAG+TGG | 0.676679 | 2_3:-29772466 | Msa0287350:CDS |
AAACCAAAAGTAGCATACGA+CGG | 0.681045 | 2_3:-29773329 | Msa0287350:CDS |
CATAAAACCTAATACTCCGG+TGG | 0.696607 | 2_3:-29774086 | Msa0287350:CDS |
ACTTCATATGAGCACCAACG+GGG | 0.702348 | 2_3:+29773963 | None:intergenic |
GCAAGATGGTTCTACCTACG+TGG | 0.709144 | 2_3:-29773161 | Msa0287350:intron |
AAGTGGTAACAAAACCACGT+AGG | 0.744385 | 2_3:+29773147 | None:intergenic |
CTTCATATGAGCACCAACGG+GGG | 0.754340 | 2_3:+29773964 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AAATATTAATCCATTATATT+GGG | + | chr2_3:29773200-29773219 | None:intergenic | 10.0% |
!! | AAAATATTAATCCATTATAT+TGG | + | chr2_3:29773201-29773220 | None:intergenic | 10.0% |
!!! | ATTAATATTTTACTGAATAA+GGG | - | chr2_3:29773210-29773229 | Msa0287350:intron | 10.0% |
!!! | TATGAAAATTTTCATTGTTT+TGG | - | chr2_3:29772317-29772336 | Msa0287350:CDS | 15.0% |
!! | TGTTTAATTGTGTTAAAAAT+TGG | - | chr2_3:29772832-29772851 | Msa0287350:intron | 15.0% |
!! | GTTTAATTGTGTTAAAAATT+GGG | - | chr2_3:29772833-29772852 | Msa0287350:intron | 15.0% |
!!! | AACATTAAGTTTTGAATTTT+AGG | - | chr2_3:29772904-29772923 | Msa0287350:intron | 15.0% |
!!! | ATATTTGAATTTTTAGTTAG+TGG | - | chr2_3:29773165-29773184 | Msa0287350:intron | 15.0% |
!!! | GATTAATATTTTACTGAATA+AGG | - | chr2_3:29773209-29773228 | Msa0287350:intron | 15.0% |
!!! | TTTTATACTTTAGAGTTGAT+TGG | - | chr2_3:29772356-29772375 | Msa0287350:CDS | 20.0% |
!! | ATTAAAGTATGCTAAACAAT+TGG | - | chr2_3:29772970-29772989 | Msa0287350:intron | 20.0% |
!! | ACATGAAAAAAACGAAATAT+TGG | + | chr2_3:29773302-29773321 | None:intergenic | 20.0% |
!! | TTTACAGAGAAATAAACAAA+TGG | + | chr2_3:29773330-29773349 | None:intergenic | 20.0% |
!!! | TTCAAAATTGTGTTTTTAGA+AGG | - | chr2_3:29773380-29773399 | Msa0287350:intron | 20.0% |
!!! | TTTTAATTATTGTTAGTGAC+TGG | - | chr2_3:29774106-29774125 | Msa0287350:CDS | 20.0% |
!! | CAAATTGAAACTAATATGTT+TGG | - | chr2_3:29774276-29774295 | Msa0287350:intron | 20.0% |
!!! | TTTCTTCTACACTATTTTAA+TGG | - | chr2_3:29774797-29774816 | Msa0287350:intron | 20.0% |
!! | TGAACAAAGAAAAAAATTGA+TGG | + | chr2_3:29775363-29775382 | None:intergenic | 20.0% |
!!! | ATCAATTTTTTTCTTTGTTC+AGG | - | chr2_3:29775362-29775381 | Msa0287350:intron | 20.0% |
!! | TCAAAATTTGGATTTGAGTT+TGG | - | chr2_3:29772235-29772254 | Msa0287350:CDS | 25.0% |
!! | CAAAATTTGGATTTGAGTTT+GGG | - | chr2_3:29772236-29772255 | Msa0287350:CDS | 25.0% |
! | TGTCTATGCAATTATGATAA+TGG | - | chr2_3:29772293-29772312 | Msa0287350:CDS | 25.0% |
!!! | TTTTCATTGTTTTGGTTCTA+AGG | - | chr2_3:29772325-29772344 | Msa0287350:CDS | 25.0% |
!! | TAGATATATGTTAGTTTCCA+AGG | - | chr2_3:29772648-29772667 | Msa0287350:intron | 25.0% |
!!! | AGTTTTAAGTATGAAGTTCA+GGG | + | chr2_3:29772680-29772699 | None:intergenic | 25.0% |
!! | TGTCATGTTTGAAATTATAG+TGG | - | chr2_3:29772744-29772763 | Msa0287350:intron | 25.0% |
! | CACAATTAAACAATCATCAA+TGG | + | chr2_3:29772824-29772843 | None:intergenic | 25.0% |
!! | GTTTAGCATACTTTAATTTC+AGG | + | chr2_3:29772967-29772986 | None:intergenic | 25.0% |
! | GTTTCAAAAATTCCAAATCA+TGG | + | chr2_3:29773079-29773098 | None:intergenic | 25.0% |
! | GAACTATGATATAAAAGTAG+AGG | - | chr2_3:29773270-29773289 | Msa0287350:intron | 25.0% |
!!! | AAATTGTGTTTTTAGAAGGA+TGG | - | chr2_3:29773384-29773403 | Msa0287350:intron | 25.0% |
! | CATTAAGAAAGGATATAAAC+TGG | - | chr2_3:29773510-29773529 | Msa0287350:intron | 25.0% |
!!! | AGAGAAAGTACAAACTTTTT+GGG | + | chr2_3:29773615-29773634 | None:intergenic | 25.0% |
! | AATGGAAGAAATTCAAAAAC+TGG | - | chr2_3:29773937-29773956 | Msa0287350:intron | 25.0% |
!! | TGATGACTTTTAAGCTATAA+TGG | + | chr2_3:29774252-29774271 | None:intergenic | 25.0% |
! | AATGAAGTTCTCAATATGTT+TGG | + | chr2_3:29774409-29774428 | None:intergenic | 25.0% |
! | GTAAGCTATCTTAAGTAATA+TGG | + | chr2_3:29774472-29774491 | None:intergenic | 25.0% |
! | TCGTCAAAACCATATTAATT+TGG | - | chr2_3:29774520-29774539 | Msa0287350:intron | 25.0% |
!!! | ACCATATTAATTTGGTGTTT+TGG | - | chr2_3:29774528-29774547 | Msa0287350:intron | 25.0% |
! | ACCAAAACACCAAATTAATA+TGG | + | chr2_3:29774532-29774551 | None:intergenic | 25.0% |
!! | ATGAAGAAGTTATTTGCTAA+AGG | + | chr2_3:29774744-29774763 | None:intergenic | 25.0% |
!! | TACATAACATACATTAGTCT+CGG | + | chr2_3:29775055-29775074 | None:intergenic | 25.0% |
! | TGTATGTTATGTATGATTGT+AGG | - | chr2_3:29775062-29775081 | Msa0287350:intron | 25.0% |
!!! | GCATTTGTTATAACTTCATA+AGG | + | chr2_3:29775158-29775177 | None:intergenic | 25.0% |
!! | TTCAGAAGAGTATATTGAAA+AGG | + | chr2_3:29775211-29775230 | None:intergenic | 25.0% |
! | AAAGTTTATCACTGCAAATT+AGG | + | chr2_3:29775307-29775326 | None:intergenic | 25.0% |
!!! | TCTTTTTTGTTTGCTTTGTT+TGG | - | chr2_3:29775433-29775452 | Msa0287350:intron | 25.0% |
! | AAAAATGCATCTCTACATTA+TGG | - | chr2_3:29775667-29775686 | Msa0287350:intron | 25.0% |
TAATGCTGCAGATCAAAATT+TGG | - | chr2_3:29772223-29772242 | Msa0287350:CDS | 30.0% | |
!! | TACTTTAGAGTTGATTGGTT+TGG | - | chr2_3:29772361-29772380 | Msa0287350:CDS | 30.0% |
!! | ATTGGTTTGGTGTTTGTTTA+GGG | - | chr2_3:29772374-29772393 | Msa0287350:CDS | 30.0% |
TGAGAAAAGAAAAGGAAGAA+AGG | - | chr2_3:29772421-29772440 | Msa0287350:CDS | 30.0% | |
GAGAAAAGAAAAGGAAGAAA+GGG | - | chr2_3:29772422-29772441 | Msa0287350:CDS | 30.0% | |
!!! | GAGTTTTAAGTATGAAGTTC+AGG | + | chr2_3:29772681-29772700 | None:intergenic | 30.0% |
AAAAGTTTGATATCCATCGA+AGG | + | chr2_3:29772703-29772722 | None:intergenic | 30.0% | |
! | GAAATTATAGTGGAACAAGA+AGG | - | chr2_3:29772754-29772773 | Msa0287350:intron | 30.0% |
!! | AAATTGGGTTGACATTCATT+TGG | - | chr2_3:29772848-29772867 | Msa0287350:intron | 30.0% |
ATTTGGTTGTGATTCCAAAT+TGG | - | chr2_3:29772865-29772884 | Msa0287350:intron | 30.0% | |
TTTGGTTGTGATTCCAAATT+GGG | - | chr2_3:29772866-29772885 | Msa0287350:intron | 30.0% | |
AACTTAATGTTGTTGCACAT+GGG | + | chr2_3:29772895-29772914 | None:intergenic | 30.0% | |
AAACTTAATGTTGTTGCACA+TGG | + | chr2_3:29772896-29772915 | None:intergenic | 30.0% | |
GTTCAAATGCACAATGTATT+TGG | - | chr2_3:29773117-29773136 | Msa0287350:CDS | 30.0% | |
!!! | ATAAGGGTTTTGAAGTTTGT+AGG | - | chr2_3:29773226-29773245 | Msa0287350:intron | 30.0% |
! | TTTGAAGTTTGTAGGATTGA+TGG | - | chr2_3:29773234-29773253 | Msa0287350:intron | 30.0% |
GCAACAATTTCTGATTCAAA+TGG | + | chr2_3:29773441-29773460 | None:intergenic | 30.0% | |
ATACATGGTGATATCATGTA+TGG | - | chr2_3:29773485-29773504 | Msa0287350:intron | 30.0% | |
CATGTATGGAACATTAAGAA+AGG | - | chr2_3:29773499-29773518 | Msa0287350:intron | 30.0% | |
! | GGTACAAATGTTTGAAACTT+TGG | - | chr2_3:29773571-29773590 | Msa0287350:intron | 30.0% |
! | GTTTGAAACTTTGGATACTT+CGG | - | chr2_3:29773580-29773599 | Msa0287350:intron | 30.0% |
!! | AGTACAAACTTTTTGGGAAA+GGG | + | chr2_3:29773609-29773628 | None:intergenic | 30.0% |
!! | AAGTACAAACTTTTTGGGAA+AGG | + | chr2_3:29773610-29773629 | None:intergenic | 30.0% |
!! | CAGAGAAAGTACAAACTTTT+TGG | + | chr2_3:29773616-29773635 | None:intergenic | 30.0% |
AAAGTTTGTACTTTCTCTGA+AGG | - | chr2_3:29773617-29773636 | Msa0287350:intron | 30.0% | |
TCTGAAGGACTAATAGATTT+AGG | - | chr2_3:29773632-29773651 | Msa0287350:intron | 30.0% | |
! | GGTTTAATGAGTTATTTCAG+TGG | - | chr2_3:29773653-29773672 | Msa0287350:intron | 30.0% |
TAGCATAAAACCTAATACTC+CGG | - | chr2_3:29773891-29773910 | Msa0287350:intron | 30.0% | |
AATTCTCAAATGATACTGAG+AGG | - | chr2_3:29773965-29773984 | Msa0287350:CDS | 30.0% | |
TGTTATTGATCTATTGCTTG+AGG | - | chr2_3:29774041-29774060 | Msa0287350:CDS | 30.0% | |
! | TCTATTGCTTGAGGTAATTT+TGG | - | chr2_3:29774050-29774069 | Msa0287350:CDS | 30.0% |
TAATTATTGTTAGTGACTGG+CGG | - | chr2_3:29774109-29774128 | Msa0287350:CDS | 30.0% | |
CATACTTCATTTATTTGCTC+TGG | + | chr2_3:29774583-29774602 | None:intergenic | 30.0% | |
AAGTATGCTATGTTGATATG+AGG | - | chr2_3:29774596-29774615 | Msa0287350:intron | 30.0% | |
!! | AAGATGTTTTTGAAAGTCTG+AGG | - | chr2_3:29774625-29774644 | Msa0287350:intron | 30.0% |
CTCTTACAAGGTAATCTTTA+CGG | - | chr2_3:29774683-29774702 | Msa0287350:intron | 30.0% | |
TCTTACAAGGTAATCTTTAC+GGG | - | chr2_3:29774684-29774703 | Msa0287350:intron | 30.0% | |
!!! | ACACTATTTTAATGGCAAGA+TGG | - | chr2_3:29774805-29774824 | Msa0287350:intron | 30.0% |
ATTGAGATTTGTGTTGAAAG+TGG | - | chr2_3:29774904-29774923 | Msa0287350:intron | 30.0% | |
ATGTATGATTGTAGGATTGT+AGG | - | chr2_3:29775070-29775089 | Msa0287350:intron | 30.0% | |
!! | GACTCATTTGGTGTTTATTT+GGG | - | chr2_3:29775120-29775139 | Msa0287350:intron | 30.0% |
!! | ACTCATTTGGTGTTTATTTG+GGG | - | chr2_3:29775121-29775140 | Msa0287350:intron | 30.0% |
!! | TTTGCTTTGTTTGGATTGAT+AGG | - | chr2_3:29775442-29775461 | Msa0287350:intron | 30.0% |
! | TGGGAAATTCAAGTTCTACA+AGG | - | chr2_3:29772255-29772274 | Msa0287350:CDS | 35.0% |
!! | GATTGGTTTGGTGTTTGTTT+AGG | - | chr2_3:29772373-29772392 | Msa0287350:CDS | 35.0% |
! | TGTGCTTTCCTCACAATTTT+TGG | - | chr2_3:29772485-29772504 | Msa0287350:CDS | 35.0% |
!!! | TTCCTCACAATTTTTGGAGT+TGG | - | chr2_3:29772491-29772510 | Msa0287350:CDS | 35.0% |
!!! | TTTTCTCAGCTTTGGAGATT+TGG | - | chr2_3:29772524-29772543 | Msa0287350:intron | 35.0% |
!! | TTTCTCAGCTTTGGAGATTT+GGG | - | chr2_3:29772525-29772544 | Msa0287350:intron | 35.0% |
CATACTTAAAACTCCTTCGA+TGG | - | chr2_3:29772687-29772706 | Msa0287350:intron | 35.0% | |
!! | ATTGTTTGTTAGCCTTTGCT+TGG | - | chr2_3:29772792-29772811 | Msa0287350:intron | 35.0% |
CCATTGAACATGTTCATCAA+AGG | + | chr2_3:29773013-29773032 | None:intergenic | 35.0% | |
CCTTTGATGAACATGTTCAA+TGG | - | chr2_3:29773010-29773029 | Msa0287350:intron | 35.0% | |
ATGTTCAATGGCATGTTACA+TGG | - | chr2_3:29773022-29773041 | Msa0287350:intron | 35.0% | |
!! | CTTGATGATGAACCATGATT+TGG | - | chr2_3:29773064-29773083 | Msa0287350:intron | 35.0% |
GAACAAAATATGACTGTGAG+TGG | + | chr2_3:29773101-29773120 | None:intergenic | 35.0% | |
! | GACTAAAGTGCCCAATATAA+TGG | - | chr2_3:29773187-29773206 | Msa0287350:intron | 35.0% |
TCAGAAATTGTTGCCAAGTT+TGG | - | chr2_3:29773447-29773466 | Msa0287350:intron | 35.0% | |
CAGAAATTGTTGCCAAGTTT+GGG | - | chr2_3:29773448-29773467 | Msa0287350:intron | 35.0% | |
ACAGCAGCACAATAATCTTA+AGG | - | chr2_3:29773537-29773556 | Msa0287350:intron | 35.0% | |
AATCTTAAGGAGACAGAAAC+AGG | - | chr2_3:29773550-29773569 | Msa0287350:intron | 35.0% | |
! | CACATTTGAAATGTTTGCTG+CGG | - | chr2_3:29773792-29773811 | Msa0287350:intron | 35.0% |
!! | TGATTTTGATGCATGAGATG+AGG | - | chr2_3:29774143-29774162 | Msa0287350:CDS | 35.0% |
!! | GATTTTGATGCATGAGATGA+GGG | - | chr2_3:29774144-29774163 | Msa0287350:CDS | 35.0% |
TAACCTCAAACTTAACAGCT+AGG | + | chr2_3:29774223-29774242 | None:intergenic | 35.0% | |
TGAAGCTTCAACAAAATCAC+AGG | + | chr2_3:29774334-29774353 | None:intergenic | 35.0% | |
AGTTCTCAATATGTTTGGCT+GGG | + | chr2_3:29774404-29774423 | None:intergenic | 35.0% | |
AAGTTCTCAATATGTTTGGC+TGG | + | chr2_3:29774405-29774424 | None:intergenic | 35.0% | |
!!! | TTTTGGTTTGCTGATAGACA+CGG | - | chr2_3:29774545-29774564 | Msa0287350:intron | 35.0% |
AAACCAAAAGTAGCATACGA+CGG | - | chr2_3:29774651-29774670 | Msa0287350:intron | 35.0% | |
!! | GTTTTGTTACCACTTTTGGA+AGG | - | chr2_3:29774841-29774860 | Msa0287350:intron | 35.0% |
!! | ACTTTTGGAAGGAGATTTCA+GGG | - | chr2_3:29774852-29774871 | Msa0287350:intron | 35.0% |
!! | GGACTCATTTGGTGTTTATT+TGG | - | chr2_3:29775119-29775138 | Msa0287350:intron | 35.0% |
TGTTCCATTAGTGCAGTATT+AGG | - | chr2_3:29775249-29775268 | Msa0287350:intron | 35.0% | |
AAGTCCTAATACTGCACTAA+TGG | + | chr2_3:29775256-29775275 | None:intergenic | 35.0% | |
TTTGTTCAGGACTATTGAGT+CGG | - | chr2_3:29775375-29775394 | Msa0287350:intron | 35.0% | |
TTGATAGGAATGATGCATTG+TGG | - | chr2_3:29775457-29775476 | Msa0287350:CDS | 35.0% | |
! | TAGTAGGGTTTGAAGTAATC+CGG | + | chr2_3:29775584-29775603 | None:intergenic | 35.0% |
CTTCAAACCCTACTATTTAC+CGG | - | chr2_3:29775589-29775608 | Msa0287350:intron | 35.0% | |
TTCAAACCCTACTATTTACC+GGG | - | chr2_3:29775590-29775609 | Msa0287350:intron | 35.0% | |
AATGCATCTCTACATTATGG+TGG | - | chr2_3:29775670-29775689 | Msa0287350:intron | 35.0% | |
!! | TCTCTACATTATGGTGGATT+AGG | - | chr2_3:29775676-29775695 | Msa0287350:intron | 35.0% |
!! | CATTATGGTGGATTAGGTAT+AGG | - | chr2_3:29775682-29775701 | Msa0287350:intron | 35.0% |
ATTAGGTATAGGCTATGCAT+TGG | - | chr2_3:29775693-29775712 | Msa0287350:intron | 35.0% | |
TAGCAATTCAGCTCAAACTA+GGG | - | chr2_3:29775717-29775736 | Msa0287350:intron | 35.0% | |
CTATATTACAGGTACAGAGA+TGG | + | chr2_3:29775782-29775801 | None:intergenic | 35.0% | |
!! | GGTGTTGCTGAGAAAAGAAA+AGG | - | chr2_3:29772413-29772432 | Msa0287350:CDS | 40.0% |
AGAAAAGGAAGAAAGGGTCT+AGG | - | chr2_3:29772428-29772447 | Msa0287350:CDS | 40.0% | |
GAAAAGGAAGAAAGGGTCTA+GGG | - | chr2_3:29772429-29772448 | Msa0287350:CDS | 40.0% | |
CTCCAACTCCAAAAATTGTG+AGG | + | chr2_3:29772496-29772515 | None:intergenic | 40.0% | |
!!! | CTCACAATTTTTGGAGTTGG+AGG | - | chr2_3:29772494-29772513 | Msa0287350:CDS | 40.0% |
!!! | AATTTTTGGAGTTGGAGGAG+CGG | - | chr2_3:29772499-29772518 | Msa0287350:CDS | 40.0% |
AGTGAGATAGGCAAAGCATA+TGG | - | chr2_3:29772590-29772609 | Msa0287350:intron | 40.0% | |
CAATGGAAGTAACCAAGCAA+AGG | + | chr2_3:29772807-29772826 | None:intergenic | 40.0% | |
! | GATTGATGGTTCAGTGAGAT+TGG | - | chr2_3:29773248-29773267 | Msa0287350:intron | 40.0% |
TTCATCACTATATGCAGCGT+TGG | - | chr2_3:29773696-29773715 | Msa0287350:intron | 40.0% | |
CATAAAACCTAATACTCCGG+TGG | - | chr2_3:29773894-29773913 | Msa0287350:intron | 40.0% | |
GCTGCAAATGCTTCATCAAA+TGG | - | chr2_3:29773919-29773938 | Msa0287350:intron | 40.0% | |
ACACTTCATATGAGCACCAA+CGG | + | chr2_3:29774022-29774041 | None:intergenic | 40.0% | |
AAGCCTAGCTGTTAAGTTTG+AGG | - | chr2_3:29774217-29774236 | Msa0287350:CDS | 40.0% | |
TCCTAATCGTGGACTTTCAT+CGG | + | chr2_3:29774494-29774513 | None:intergenic | 40.0% | |
GACGAATCAATTCCTAATCG+TGG | + | chr2_3:29774505-29774524 | None:intergenic | 40.0% | |
AACCAAAAGTAGCATACGAC+GGG | - | chr2_3:29774652-29774671 | Msa0287350:intron | 40.0% | |
AAGTGGTAACAAAACCACGT+AGG | + | chr2_3:29774836-29774855 | None:intergenic | 40.0% | |
!!! | CGTGGTTTTGTTACCACTTT+TGG | - | chr2_3:29774837-29774856 | Msa0287350:intron | 40.0% |
CTGAAATCTCCTTCCAAAAG+TGG | + | chr2_3:29774853-29774872 | None:intergenic | 40.0% | |
!! | CACTTTTGGAAGGAGATTTC+AGG | - | chr2_3:29774851-29774870 | Msa0287350:intron | 40.0% |
CAATGGTAGAAACAAATCCC+CGG | - | chr2_3:29775009-29775028 | Msa0287350:intron | 40.0% | |
! | ATACATTAGTCTCGGCATTG+AGG | + | chr2_3:29775047-29775066 | None:intergenic | 40.0% |
CTGATGTGGAGGAATTTGAT+GGG | - | chr2_3:29775098-29775117 | Msa0287350:intron | 40.0% | |
GGAATTTGATGGGACTCATT+TGG | - | chr2_3:29775108-29775127 | Msa0287350:intron | 40.0% | |
!! | ATTTGGTGTTTATTTGGGGC+TGG | - | chr2_3:29775125-29775144 | Msa0287350:intron | 40.0% |
TTGTTCAGGACTATTGAGTC+GGG | - | chr2_3:29775376-29775395 | Msa0287350:intron | 40.0% | |
AGGTTCAGCTGCAATTGAAA+GGG | - | chr2_3:29775537-29775556 | Msa0287350:CDS | 40.0% | |
TGCAATTGAAAGGGTGGTTA+AGG | - | chr2_3:29775546-29775565 | Msa0287350:CDS | 40.0% | |
CTTTGTCCCGGTAAATAGTA+GGG | + | chr2_3:29775599-29775618 | None:intergenic | 40.0% | |
TCTTTGTCCCGGTAAATAGT+AGG | + | chr2_3:29775600-29775619 | None:intergenic | 40.0% | |
AAACACTCTAGCAAGTGAAG+CGG | + | chr2_3:29775638-29775657 | None:intergenic | 40.0% | |
CTAGCAATTCAGCTCAAACT+AGG | - | chr2_3:29775716-29775735 | Msa0287350:intron | 40.0% | |
TAGGGTACAGCTGCAACAAA+AGG | - | chr2_3:29772392-29772411 | Msa0287350:CDS | 45.0% | |
! | AAGGGTCTAGGGAGTGTAAT+TGG | - | chr2_3:29772440-29772459 | Msa0287350:CDS | 45.0% |
GTAATTGGATACAGTGCTGC+CGG | - | chr2_3:29772455-29772474 | Msa0287350:CDS | 45.0% | |
! | TGAGACTGTGTCACTCAACT+TGG | + | chr2_3:29772570-29772589 | None:intergenic | 45.0% |
GACACAGTCTCAAGTGAGAT+AGG | - | chr2_3:29772578-29772597 | Msa0287350:intron | 45.0% | |
GAAGTTCAGGGTTTGATCCT+TGG | + | chr2_3:29772668-29772687 | None:intergenic | 45.0% | |
TGCACATGGGAATCCCAATT+TGG | + | chr2_3:29772882-29772901 | None:intergenic | 45.0% | |
! | GTAGCGCTGAAGAAGATACA+TGG | - | chr2_3:29773470-29773489 | Msa0287350:intron | 45.0% |
TTGCTGCGGAAAAGCTAGAT+AGG | - | chr2_3:29773806-29773825 | Msa0287350:intron | 45.0% | |
AGAATTGCGTCGAGCAAAGT+TGG | - | chr2_3:29773868-29773887 | Msa0287350:intron | 45.0% | |
AAAACCTAATACTCCGGTGG+TGG | - | chr2_3:29773897-29773916 | Msa0287350:intron | 45.0% | |
ACTTCATATGAGCACCAACG+GGG | + | chr2_3:29774020-29774039 | None:intergenic | 45.0% | |
CACTTCATATGAGCACCAAC+GGG | + | chr2_3:29774021-29774040 | None:intergenic | 45.0% | |
GTTTGGCTGAACAGTGAGTT+AGG | - | chr2_3:29774293-29774312 | Msa0287350:intron | 45.0% | |
TCTCAATATGTTTGGCTGGG+CGG | + | chr2_3:29774401-29774420 | None:intergenic | 45.0% | |
ACCGATGAAAGTCCACGATT+AGG | - | chr2_3:29774490-29774509 | Msa0287350:intron | 45.0% | |
CGGGCAACAATTCTCTTACA+AGG | - | chr2_3:29774671-29774690 | Msa0287350:intron | 45.0% | |
AGATTTCAGGGCTGTTCTTC+AGG | - | chr2_3:29774864-29774883 | Msa0287350:intron | 45.0% | |
GATTTCAGGGCTGTTCTTCA+GGG | - | chr2_3:29774865-29774884 | Msa0287350:intron | 45.0% | |
ATTTCAGGGCTGTTCTTCAG+GGG | - | chr2_3:29774866-29774885 | Msa0287350:intron | 45.0% | |
CGTGTATTCTCTGCTCACAA+TGG | - | chr2_3:29774992-29775011 | Msa0287350:intron | 45.0% | |
TAGAAACAAATCCCCGGAGT+TGG | - | chr2_3:29775015-29775034 | Msa0287350:intron | 45.0% | |
AGAAACAAATCCCCGGAGTT+GGG | - | chr2_3:29775016-29775035 | Msa0287350:intron | 45.0% | |
GATTGTAGGATGTCCTGATG+TGG | - | chr2_3:29775084-29775103 | Msa0287350:intron | 45.0% | |
CCATCAAATTCCTCCACATC+AGG | + | chr2_3:29775100-29775119 | None:intergenic | 45.0% | |
CCTGATGTGGAGGAATTTGA+TGG | - | chr2_3:29775097-29775116 | Msa0287350:intron | 45.0% | |
ATTGCATTCTCCTTACCCGT+CGG | + | chr2_3:29775487-29775506 | None:intergenic | 45.0% | |
CAACATTGCTCGAGTTATGC+CGG | - | chr2_3:29775509-29775528 | Msa0287350:CDS | 45.0% | |
GAGGTTCAGCTGCAATTGAA+AGG | - | chr2_3:29775536-29775555 | Msa0287350:CDS | 45.0% | |
TTCAGCTGCAATTGAAAGGG+TGG | - | chr2_3:29775540-29775559 | Msa0287350:CDS | 45.0% | |
TGAAGTAATCCGGCAATAGC+TGG | + | chr2_3:29775574-29775593 | None:intergenic | 45.0% | |
ACGTCTAGATCTCTTTGTCC+CGG | + | chr2_3:29775611-29775630 | None:intergenic | 45.0% | |
ACAGGTACAGAGATGGACAT+TGG | + | chr2_3:29775775-29775794 | None:intergenic | 45.0% | |
! | GAGGAAAGCACAAACGCAAC+CGG | + | chr2_3:29772477-29772496 | None:intergenic | 50.0% |
!! | GAGCGGCTTTTTCTCAGCTT+TGG | - | chr2_3:29772516-29772535 | Msa0287350:CDS | 50.0% |
TCTTCAGCGCTACCCAAACT+TGG | + | chr2_3:29773463-29773482 | None:intergenic | 50.0% | |
TCGAGCCTCACATTGTGTCA+TGG | - | chr2_3:29773761-29773780 | Msa0287350:intron | 50.0% | |
AGCCTCACATTGTGTCATGG+TGG | - | chr2_3:29773764-29773783 | Msa0287350:intron | 50.0% | |
CTCCACCATGACACAATGTG+AGG | + | chr2_3:29773769-29773788 | None:intergenic | 50.0% | |
CTTCATATGAGCACCAACGG+GGG | + | chr2_3:29774019-29774038 | None:intergenic | 50.0% | |
TGGCTGAACAGTGAGTTAGG+CGG | - | chr2_3:29774296-29774315 | Msa0287350:intron | 50.0% | |
TGAGTTAGGCGGAATCACTG+TGG | - | chr2_3:29774307-29774326 | Msa0287350:intron | 50.0% | |
!!! | TGCCCGTCGTATGCTACTTT+TGG | + | chr2_3:29774657-29774676 | None:intergenic | 50.0% |
! | GCAAGATGGTTCTACCTACG+TGG | - | chr2_3:29774819-29774838 | Msa0287350:intron | 50.0% |
ATTGAGGTCCAACCCAACTC+CGG | + | chr2_3:29775031-29775050 | None:intergenic | 50.0% | |
TGTAGGATGTCCTGATGTGG+AGG | - | chr2_3:29775087-29775106 | Msa0287350:intron | 50.0% | |
GATGCATTGTGGAACACCGA+CGG | - | chr2_3:29775468-29775487 | Msa0287350:CDS | 50.0% | |
ATGCATTGTGGAACACCGAC+GGG | - | chr2_3:29775469-29775488 | Msa0287350:CDS | 50.0% | |
! | GTTAAGGCACCAGCTATTGC+CGG | - | chr2_3:29775562-29775581 | Msa0287350:CDS | 50.0% |
AGGGATTCAAGCTTTGCTGC+AGG | - | chr2_3:29775736-29775755 | Msa0287350:intron | 50.0% | |
GGGATTCAAGCTTTGCTGCA+GGG | - | chr2_3:29775737-29775756 | Msa0287350:intron | 50.0% | |
GGATTCAAGCTTTGCTGCAG+GGG | - | chr2_3:29775738-29775757 | Msa0287350:intron | 50.0% | |
! | GAAGCATTTGCAGCCACCAC+CGG | + | chr2_3:29773913-29773932 | None:intergenic | 55.0% |
AATATACGCGAAGCCCCCGT+TGG | - | chr2_3:29774003-29774022 | Msa0287350:CDS | 55.0% | |
ACAAATCCCCGGAGTTGGGT+TGG | - | chr2_3:29775020-29775039 | Msa0287350:intron | 55.0% | |
TTGAGGTCCAACCCAACTCC+GGG | + | chr2_3:29775030-29775049 | None:intergenic | 55.0% | |
TTGTGGAACACCGACGGGTA+AGG | - | chr2_3:29775474-29775493 | Msa0287350:CDS | 55.0% | |
TTGCTCGAGTTATGCCGGAG+TGG | - | chr2_3:29775514-29775533 | Msa0287350:CDS | 55.0% | |
TTGCAGCTGAACCTCCACTC+CGG | + | chr2_3:29775531-29775550 | None:intergenic | 55.0% | |
! | GCAGCCACCACCGGAGTATT+AGG | + | chr2_3:29773904-29773923 | None:intergenic | 60.0% |
TGAGGTCCAACCCAACTCCG+GGG | + | chr2_3:29775029-29775048 | None:intergenic | 60.0% | |
CTCGAGTTATGCCGGAGTGG+AGG | - | chr2_3:29775517-29775536 | Msa0287350:CDS | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr2_3 | gene | 29772201 | 29775801 | 29772201 | ID=Msa0287350;Name=Msa0287350 |
chr2_3 | mRNA | 29772201 | 29775801 | 29772201 | ID=Msa0287350-mRNA-1;Parent=Msa0287350;Name=Msa0287350-mRNA-1;_AED=0.18;_eAED=0.22;_QI=0|0|0.16|0.83|1|1|6|0|322 |
chr2_3 | exon | 29775781 | 29775801 | 29775781 | ID=Msa0287350-mRNA-1:exon:10391;Parent=Msa0287350-mRNA-1 |
chr2_3 | exon | 29775456 | 29775607 | 29775456 | ID=Msa0287350-mRNA-1:exon:10390;Parent=Msa0287350-mRNA-1 |
chr2_3 | exon | 29773940 | 29774243 | 29773940 | ID=Msa0287350-mRNA-1:exon:10389;Parent=Msa0287350-mRNA-1 |
chr2_3 | exon | 29773310 | 29773361 | 29773310 | ID=Msa0287350-mRNA-1:exon:10388;Parent=Msa0287350-mRNA-1 |
chr2_3 | exon | 29773077 | 29773178 | 29773077 | ID=Msa0287350-mRNA-1:exon:10387;Parent=Msa0287350-mRNA-1 |
chr2_3 | exon | 29772201 | 29772538 | 29772201 | ID=Msa0287350-mRNA-1:exon:10386;Parent=Msa0287350-mRNA-1 |
chr2_3 | CDS | 29775781 | 29775801 | 29775781 | ID=Msa0287350-mRNA-1:cds;Parent=Msa0287350-mRNA-1 |
chr2_3 | CDS | 29775456 | 29775607 | 29775456 | ID=Msa0287350-mRNA-1:cds;Parent=Msa0287350-mRNA-1 |
chr2_3 | CDS | 29773940 | 29774243 | 29773940 | ID=Msa0287350-mRNA-1:cds;Parent=Msa0287350-mRNA-1 |
chr2_3 | CDS | 29773310 | 29773361 | 29773310 | ID=Msa0287350-mRNA-1:cds;Parent=Msa0287350-mRNA-1 |
chr2_3 | CDS | 29773077 | 29773178 | 29773077 | ID=Msa0287350-mRNA-1:cds;Parent=Msa0287350-mRNA-1 |
chr2_3 | CDS | 29772201 | 29772538 | 29772201 | ID=Msa0287350-mRNA-1:cds;Parent=Msa0287350-mRNA-1 |
Gene Sequence |
Protein sequence |