AlfalfaGEDB | Msa1320580

M. sativa cultivar zhongmu-4 / Msa1320580

KEGG: -
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0053700	Msa1320580	0.805944	1.045032e-49	-8.615850e-47
Msa0164370	Msa1320580	0.824468	7.942555e-54	-8.615850e-47
Msa0287350	Msa1320580	0.803240	3.831667e-49	-8.615850e-47
Msa0337510	Msa1320580	0.838235	3.244582e-57	-8.615850e-47
Msa0364990	Msa1320580	0.823094	1.666852e-53	-8.615850e-47
Msa0394280	Msa1320580	0.839384	1.636863e-57	-8.615850e-47
Msa0414020	Msa1320580	0.835894	1.286005e-56	-8.615850e-47
Msa0444040	Msa1320580	0.814468	1.517361e-51	-8.615850e-47
Msa0485890	Msa1320580	0.902965	5.648424e-79	-8.615850e-47
Msa0576730	Msa1320580	0.809254	2.071770e-50	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Find 95 sgRNAs with CRISPR-Local

Find 175 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATGGGGTTTCATGGTTT+TGG	0.235392	8_4:-25211151	None:intergenic
AAAGGCATGTGTTACGTCAA+TGG	0.457053	8_4:+25213876	Msa1320580:three_prime_UTR
AACAAGGGTGGTAGAGATTT+AGG	0.237128	8_4:-25211206	None:intergenic
AACGGAATGGGTTAAAATTA+TGG	0.195683	8_4:-25211276	None:intergenic
AACTGAACCCTCACACTGAC+AGG	0.423043	8_4:-25211576	None:intergenic
AAGCATGTGTTTATTGGATT+AGG	0.266751	8_4:+25211656	Msa1320580:three_prime_UTR
AATACCTATGACTTGCGTTT+TGG	0.377633	8_4:-25212929	None:intergenic
AATTAACAGCAGGATGGCAT+TGG	0.517260	8_4:-25211774	None:intergenic
ACAGGAGTTGAAGTAGAGAA+AGG	0.547321	8_4:+25213707	Msa1320580:intron
ACCGTATCTCACACCGGTCA+CGG	0.531370	8_4:-25211505	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TGAGATTGAGGAATAAAATG+GGG	-	chr8_4:25211168-25211187	None:intergenic	30.0%
GTGAGATTGAGGAATAAAAT+GGG	-	chr8_4:25211169-25211188	None:intergenic	30.0%
AGTGAGATTGAGGAATAAAA+TGG	-	chr8_4:25211170-25211189	None:intergenic	30.0%
ATAATCCTTCGATTGAACAA+GGG	-	chr8_4:25211224-25211243	None:intergenic	30.0%
GCTTAAATGAAACTGGATAA+AGG	-	chr8_4:25211250-25211269	None:intergenic	30.0%
AGCAACTGTAGAAAAGAAAT+GGG	-	chr8_4:25211347-25211366	None:intergenic	30.0%
TTTCTGCTTAAGATTGAAGA+TGG	+	chr8_4:25211626-25211645	Msa1320580:three_prime_UTR	30.0%
TTAAGATTGAAGATGGACAA+GGG	+	chr8_4:25211633-25211652	Msa1320580:three_prime_UTR	30.0%
AAGCATGTGTTTATTGGATT+AGG	+	chr8_4:25211656-25211675	Msa1320580:three_prime_UTR	30.0%
AGCATGTGTTTATTGGATTA+GGG	+	chr8_4:25211657-25211676	Msa1320580:three_prime_UTR	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr8_4	gene	25211087	25214351	25211087	ID=Msa1320580;Name=Msa1320580
chr8_4	mRNA	25211087	25214351	25211087	ID=Msa1320580-mRNA-1;Parent=Msa1320580;Name=Msa1320580-mRNA-1;_AED=0.26;_eAED=0.26;_QI=155\|1\|1\|1\|0.2\|0.33\|6\|961\|51
chr8_4	exon	25211087	25211807	25211087	ID=Msa1320580-mRNA-1:exon:8622;Parent=Msa1320580-mRNA-1
chr8_4	exon	25212188	25212262	25212188	ID=Msa1320580-mRNA-1:exon:8623;Parent=Msa1320580-mRNA-1
chr8_4	exon	25212898	25212946	25212898	ID=Msa1320580-mRNA-1:exon:8624;Parent=Msa1320580-mRNA-1
chr8_4	exon	25213711	25213777	25213711	ID=Msa1320580-mRNA-1:exon:8625;Parent=Msa1320580-mRNA-1
chr8_4	exon	25213871	25213948	25213871	ID=Msa1320580-mRNA-1:exon:8626;Parent=Msa1320580-mRNA-1
chr8_4	exon	25214070	25214351	25214070	ID=Msa1320580-mRNA-1:exon:8627;Parent=Msa1320580-mRNA-1
chr8_4	five_prime_UTR	25211087	25211241	25211087	ID=Msa1320580-mRNA-1:five_prime_utr;Parent=Msa1320580-mRNA-1
chr8_4	CDS	25211242	25211397	25211242	ID=Msa1320580-mRNA-1:cds;Parent=Msa1320580-mRNA-1
chr8_4	three_prime_UTR	25211398	25211807	25211398	ID=Msa1320580-mRNA-1:three_prime_utr;Parent=Msa1320580-mRNA-1
chr8_4	three_prime_UTR	25212188	25212262	25212188	ID=Msa1320580-mRNA-1:three_prime_utr;Parent=Msa1320580-mRNA-1
chr8_4	three_prime_UTR	25212898	25212946	25212898	ID=Msa1320580-mRNA-1:three_prime_utr;Parent=Msa1320580-mRNA-1
chr8_4	three_prime_UTR	25213711	25213777	25213711	ID=Msa1320580-mRNA-1:three_prime_utr;Parent=Msa1320580-mRNA-1
chr8_4	three_prime_UTR	25213871	25213948	25213871	ID=Msa1320580-mRNA-1:three_prime_utr;Parent=Msa1320580-mRNA-1
chr8_4	three_prime_UTR	25214070	25214351	25214070	ID=Msa1320580-mRNA-1:three_prime_utr;Parent=Msa1320580-mRNA-1

Gene Sequence	>Msa1320580 ATGTTCCTTTATCCAGTTTCATTTAAGCTCTCACCCATAATTTTAACCCATTCCGTTTCTCCACAGTTCTTCACTCTTTGTTGTTCTTCAAATCCTTTTCGACCCATTTCTTTTCTACAGTTGCTCAGTTCCTTTTCTTCCAAAACATATATATAG
Protein sequence	>Msa1320580 MFLYPVSFKLSPIILTHSVSPQFFTLCCSSNPFRPISFLQLLSSFSSKTYI*