AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1059310

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 62 sgRNAs with CRISPR-Local

Find 148 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTAAAACTTAAGAATTAAT+TGG 0.153202 7_2:-45291546 Msa1059310:three_prime_UTR
CAAGGGAAGCATGTGTTTAT+TGG 0.237220 7_2:-45294031 Msa1059310:three_prime_UTR
GCCATCCTGCTGTTAATTAT+AGG 0.242602 7_2:-45293902 Msa1059310:three_prime_UTR
TTTGTAGACCTTCAAGTTAT+AGG 0.264756 7_2:-45291514 Msa1059310:three_prime_UTR
AAGCATGTGTTTATTGGATT+AGG 0.266751 7_2:-45294025 Msa1059310:three_prime_UTR
TATTTCTTAGTTGGTACATT+TGG 0.267786 7_2:-45293503 Msa1059310:intron
CAAGTTATAGGTTATCCTAT+TGG 0.318712 7_2:-45291502 Msa1059310:three_prime_UTR
ATTTCTTAGTTGGTACATTT+GGG 0.325548 7_2:-45293502 Msa1059310:intron
AGCATGTGTTTATTGGATTA+GGG 0.332772 7_2:-45294024 Msa1059310:three_prime_UTR
CTTGTCCTATATATATGTTT+TGG 0.337556 7_2:+45294300 None:intergenic
TGCTGTTAATTATAGGCTTA+AGG 0.347777 7_2:-45293895 Msa1059310:intron
TTCTTCCAAAACATATATAT+AGG 0.349435 7_2:-45294305 Msa1059310:five_prime_UTR
CTTCTAAAGATTGTGTATAA+TGG 0.357548 7_2:-45291754 Msa1059310:intron
TTAAAACTTAAGAATTAATT+GGG 0.366320 7_2:-45291545 Msa1059310:three_prime_UTR
AATACCTATGACTTGCGTTT+TGG 0.377633 7_2:+45292752 None:intergenic
AGAAGCTAATGACCAACTTA+AGG 0.395849 7_2:-45291926 Msa1059310:three_prime_UTR
AGTATTATCAATCATCCAAT+AGG 0.414360 7_2:+45291487 None:intergenic
TGTGAGAAGAGAACATGATA+AGG 0.442504 7_2:-45293942 Msa1059310:three_prime_UTR
GAAGCTAATGACCAACTTAA+GGG 0.443177 7_2:-45291925 Msa1059310:intron
GCGTTGTGTCCCGCCGTGAC+CGG 0.447886 7_2:-45294189 Msa1059310:exon
GTGTGAGGGTTCAGTTGAAC+TGG 0.448765 7_2:-45294098 Msa1059310:three_prime_UTR
TAGGATAACCTATAACTTGA+AGG 0.448867 7_2:+45291506 None:intergenic
ACTGCCAAAACGCAAGTCAT+AGG 0.449501 7_2:-45292756 Msa1059310:intron
TTTCTGCTTAAGATTGAAGA+TGG 0.451141 7_2:-45294055 Msa1059310:three_prime_UTR
GTTTATTGGATTAGGGTTAA+CGG 0.452324 7_2:-45294017 Msa1059310:three_prime_UTR
CGCCGGAGGTTGTTCGTGGC+GGG 0.452665 7_2:+45294266 None:intergenic
AAAGGCATGTGTTACGTCAA+TGG 0.457053 7_2:-45291805 Msa1059310:three_prime_UTR
GGTTCCAATCAGACAAGATC+TGG 0.463783 7_2:-45294225 Msa1059310:CDS
AGAGAACATGATAAGGAGTC+TGG 0.464167 7_2:-45293935 Msa1059310:three_prime_UTR
GGACACAACGCGGAGACGGC+CGG 0.477578 7_2:+45294201 None:intergenic
ATCCCGCCACGAACAACCTC+CGG 0.483393 7_2:-45294268 Msa1059310:five_prime_UTR
TTAGGCAAATCAACAACTGC+TGG 0.486080 7_2:-45291615 Msa1059310:intron
TAACCGCCGGAGGTTGTTCG+TGG 0.487228 7_2:+45294262 None:intergenic
CGGACCAGATCTTGTCTGAT+TGG 0.492781 7_2:+45294221 None:intergenic
TAAAGTCATTACCCTTAAGT+TGG 0.492910 7_2:+45291914 None:intergenic
TTTCAATTTGAATTGTACTC+TGG 0.494796 7_2:-45291419 Msa1059310:three_prime_UTR
GCGGTTACAAATGCGGCTAA+TGG 0.502661 7_2:-45294246 Msa1059310:exon
CAATCAGACAAGATCTGGTC+CGG 0.506501 7_2:-45294220 Msa1059310:CDS
GGCGGGACACAACGCGGAGA+CGG 0.509066 7_2:+45294197 None:intergenic
AATTAACAGCAGGATGGCAT+TGG 0.517260 7_2:+45293907 None:intergenic
AGATTTAGCCTGTCGAGTGA+TGG 0.527799 7_2:-45292785 Msa1059310:three_prime_UTR
ACCGTATCTCACACCGGTCA+CGG 0.531370 7_2:+45294176 None:intergenic
TATCTCACACCGGTCACGGC+GGG 0.540870 7_2:+45294180 None:intergenic
GTAATGTTCCATCACTCGAC+AGG 0.545474 7_2:+45292777 None:intergenic
ACAGGAGTTGAAGTAGAGAA+AGG 0.547321 7_2:-45291974 Msa1059310:intron
CCGCCGGAGGTTGTTCGTGG+CGG 0.571890 7_2:+45294265 None:intergenic
CTGTCTTACATCACATCTCA+AGG 0.573407 7_2:-45293440 Msa1059310:intron
TTAAGCCTATAATTAACAGC+AGG 0.578878 7_2:+45293897 None:intergenic
CTTAAGATTGAAGATGGACA+AGG 0.579822 7_2:-45294049 Msa1059310:three_prime_UTR
TCAACAACTGCTGGTGTACG+TGG 0.580588 7_2:-45291606 Msa1059310:three_prime_UTR
TTGGATTAGGGTTAACGGAG+AGG 0.594029 7_2:-45294012 Msa1059310:three_prime_UTR
GCCGCATTTGTAACCGCCGG+AGG 0.612310 7_2:+45294252 None:intergenic
ACCTCCGGCGGTTACAAATG+CGG 0.616884 7_2:-45294253 Msa1059310:exon
TTAGCCGCATTTGTAACCGC+CGG 0.625611 7_2:+45294249 None:intergenic
GCCTATAATTAACAGCAGGA+TGG 0.636206 7_2:+45293901 None:intergenic
TTCAGCACTGCTAAGACTCG+AGG 0.650870 7_2:-45291574 Msa1059310:three_prime_UTR
GTAAGACAGTTGAAGAAGTG+TGG 0.654301 7_2:+45293454 None:intergenic
TTAAGATTGAAGATGGACAA+GGG 0.676442 7_2:-45294048 Msa1059310:three_prime_UTR
TGGACAACGACAACACTCGA+CGG 0.686164 7_2:+45293474 None:intergenic
CCGCCACGAACAACCTCCGG+CGG 0.697916 7_2:-45294265 Msa1059310:five_prime_UTR
GGTCACGGCGGGACACAACG+CGG 0.706808 7_2:+45294191 None:intergenic
GTATCTCACACCGGTCACGG+CGG 0.748302 7_2:+45294179 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTAAAACTTAAGAATTAAT+TGG - chr7_2:45294125-45294144 Msa1059310:intron 10.0%
!! TTAAAACTTAAGAATTAATT+GGG - chr7_2:45294126-45294145 Msa1059310:intron 10.0%
!!! ACTATTTTTCAACTAAAAAT+TGG + chr7_2:45291865-45291884 None:intergenic 15.0%
!! AACTTAAACTTTGTAAAAAT+AGG - chr7_2:45291958-45291977 Msa1059310:three_prime_UTR 15.0%
!! TACAATTAGAAAATTGAATA+AGG + chr7_2:45292556-45292575 None:intergenic 15.0%
!! TTATAAAAAAATGAGACATA+AGG - chr7_2:45292614-45292633 Msa1059310:intron 15.0%
!! TATAAAAAAATGAGACATAA+GGG - chr7_2:45292615-45292634 Msa1059310:intron 15.0%
!! AGTAAAACTAAAAAATAAGA+TGG + chr7_2:45293553-45293572 None:intergenic 15.0%
!!! TATATATGTTTTGGAAGAAA+AGG + chr7_2:45291365-45291384 None:intergenic 20.0%
!! TTCTTCCAAAACATATATAT+AGG - chr7_2:45291366-45291385 Msa1059310:three_prime_UTR 20.0%
!!! TAATATGATTTGTGAAATGA+AGG - chr7_2:45292581-45292600 Msa1059310:intron 20.0%
!!! AATATGATTTGTGAAATGAA+GGG - chr7_2:45292582-45292601 Msa1059310:intron 20.0%
!!! CTTTATTTCGAATTTGTTAA+TGG - chr7_2:45293571-45293590 Msa1059310:intron 20.0%
!!! AACAATTTTTATGCCATTAA+CGG - chr7_2:45293814-45293833 Msa1059310:intron 20.0%
!!! ATTTTGTACAAAAAAACACA+AGG + chr7_2:45294019-45294038 None:intergenic 20.0%
!!! GTTAGATTTTATGTTTTTGA+TGG - chr7_2:45294217-45294236 Msa1059310:CDS 20.0%
!! CTTGTCCTATATATATGTTT+TGG + chr7_2:45291374-45291393 None:intergenic 25.0%
!! TATGCATAAAATTTGTTTCC+AGG - chr7_2:45291922-45291941 Msa1059310:intron 25.0%
!! ATGCATAAAATTTGTTTCCA+GGG - chr7_2:45291923-45291942 Msa1059310:intron 25.0%
! TTGTTGTGATATTTCTTAGT+TGG - chr7_2:45292159-45292178 Msa1059310:intron 25.0%
!! TATTTCTTAGTTGGTACATT+TGG - chr7_2:45292168-45292187 Msa1059310:intron 25.0%
!! ATTTCTTAGTTGGTACATTT+GGG - chr7_2:45292169-45292188 Msa1059310:intron 25.0%
! TGTTACTATAGTTGAATACA+AGG - chr7_2:45292274-45292293 Msa1059310:intron 25.0%
! TCTTAAAAAGACAACACAAA+TGG - chr7_2:45292354-45292373 Msa1059310:intron 25.0%
! CTAATATGTGAATAATCAAG+CGG - chr7_2:45292379-45292398 Msa1059310:intron 25.0%
! TTATAATACATACTCTGTGT+CGG + chr7_2:45293033-45293052 None:intergenic 25.0%
!! ACATTTTACTGAAGAAATTC+AGG + chr7_2:45293233-45293252 None:intergenic 25.0%
!!! TATATATGCTTTGTTTTGAC+AGG + chr7_2:45293321-45293340 None:intergenic 25.0%
! CAAAGCATATATATACGTAT+TGG - chr7_2:45293328-45293347 Msa1059310:intron 25.0%
! CTGAAATTAGAGTTCAAAAA+GGG - chr7_2:45293619-45293638 Msa1059310:intron 25.0%
!! CTTCTAAAGATTGTGTATAA+TGG - chr7_2:45293917-45293936 Msa1059310:three_prime_UTR 25.0%
!! TTTTGTACAAAATCAAACCT+TGG - chr7_2:45294026-45294045 Msa1059310:three_prime_UTR 25.0%
! AGTATTATCAATCATCCAAT+AGG + chr7_2:45294187-45294206 None:intergenic 25.0%
!!! TATGTTTTTGATGGAACTAT+TGG - chr7_2:45294226-45294245 Msa1059310:CDS 25.0%
! TTTCAATTTGAATTGTACTC+TGG - chr7_2:45294252-45294271 Msa1059310:exon 25.0%
TTTCTGCTTAAGATTGAAGA+TGG - chr7_2:45291616-45291635 Msa1059310:intron 30.0%
TTAAGATTGAAGATGGACAA+GGG - chr7_2:45291623-45291642 Msa1059310:intron 30.0%
AAGCATGTGTTTATTGGATT+AGG - chr7_2:45291646-45291665 Msa1059310:intron 30.0%
AGCATGTGTTTATTGGATTA+GGG - chr7_2:45291647-45291666 Msa1059310:intron 30.0%
! GTTTATTGGATTAGGGTTAA+CGG - chr7_2:45291654-45291673 Msa1059310:intron 30.0%
TTAAGCCTATAATTAACAGC+AGG + chr7_2:45291777-45291796 None:intergenic 30.0%
TGCTGTTAATTATAGGCTTA+AGG - chr7_2:45291776-45291795 Msa1059310:three_prime_UTR 30.0%
! TCTCATGTTTGTGAACTTTT+AGG - chr7_2:45292016-45292035 Msa1059310:intron 30.0%
AGTAACACATGTAAAGAGAA+GGG + chr7_2:45292261-45292280 None:intergenic 30.0%
TAGTAACACATGTAAAGAGA+AGG + chr7_2:45292262-45292281 None:intergenic 30.0%
GTTGCAAGCTATAAACTATA+AGG - chr7_2:45292766-45292785 Msa1059310:three_prime_UTR 30.0%
CAGAAAATTGAATGAACAGA+CGG + chr7_2:45292855-45292874 None:intergenic 30.0%
CAATTTCTTCTGTCAATATC+TGG - chr7_2:45293125-45293144 Msa1059310:intron 30.0%
AACTAATGAAGTTACCTCTT+GGG + chr7_2:45293496-45293515 None:intergenic 30.0%
AAACTAATGAAGTTACCTCT+TGG + chr7_2:45293497-45293516 None:intergenic 30.0%
AAGAGGTAACTTCATTAGTT+TGG - chr7_2:45293496-45293515 Msa1059310:three_prime_UTR 30.0%
GCTGAAATTAGAGTTCAAAA+AGG - chr7_2:45293618-45293637 Msa1059310:intron 30.0%
TAAAGTCATTACCCTTAAGT+TGG + chr7_2:45293760-45293779 None:intergenic 30.0%
TCTGCTTTGATAGAGAAAAA+AGG - chr7_2:45293848-45293867 Msa1059310:intron 30.0%
TCAAACCTTGGATATTTCTT+AGG - chr7_2:45294038-45294057 Msa1059310:three_prime_UTR 30.0%
ATTTGCCTAAGAAATATCCA+AGG + chr7_2:45294046-45294065 None:intergenic 30.0%
! TTTGTAGACCTTCAAGTTAT+AGG - chr7_2:45294157-45294176 Msa1059310:intron 30.0%
TAGGATAACCTATAACTTGA+AGG + chr7_2:45294168-45294187 None:intergenic 30.0%
CAAGTTATAGGTTATCCTAT+TGG - chr7_2:45294169-45294188 Msa1059310:intron 30.0%
CTTAAGATTGAAGATGGACA+AGG - chr7_2:45291622-45291641 Msa1059310:intron 35.0%
TGTGAGAAGAGAACATGATA+AGG - chr7_2:45291729-45291748 Msa1059310:intron 35.0%
! TAGACATTGGTTAGACACAT+GGG + chr7_2:45291991-45292010 None:intergenic 35.0%
! ATAGACATTGGTTAGACACA+TGG + chr7_2:45291992-45292011 None:intergenic 35.0%
ACATGAGACAGTATAGACAT+TGG + chr7_2:45292004-45292023 None:intergenic 35.0%
TATAGTTGAATACAAGGTCG+TGG - chr7_2:45292280-45292299 Msa1059310:intron 35.0%
AGACATAAGGGCTAAAAGAA+AGG - chr7_2:45292627-45292646 Msa1059310:intron 35.0%
TGATATGCATGTTAAGAACG+AGG + chr7_2:45292677-45292696 None:intergenic 35.0%
CAACACATATATCTTTCCTC+AGG + chr7_2:45292739-45292758 None:intergenic 35.0%
!! AATACCTATGACTTGCGTTT+TGG + chr7_2:45292922-45292941 None:intergenic 35.0%
TCATATGCACATTCAGAAAG+AGG + chr7_2:45292962-45292981 None:intergenic 35.0%
ATTGACACACATTCGTAAAG+AGG + chr7_2:45293109-45293128 None:intergenic 35.0%
TTCTTCTGTCAATATCTGGA+TGG - chr7_2:45293129-45293148 Msa1059310:intron 35.0%
! GTCTTTTCTGATATGTTCTG+CGG - chr7_2:45293151-45293170 Msa1059310:intron 35.0%
!!! TTTTAGAACCTACGCTTCAA+TGG + chr7_2:45293203-45293222 None:intergenic 35.0%
AGCTCTCTTGAAATAGTGTT+AGG - chr7_2:45293468-45293487 Msa1059310:three_prime_UTR 35.0%
! AGGTAACTTCATTAGTTTGG+TGG - chr7_2:45293499-45293518 Msa1059310:intron 35.0%
AAAAGGGCTATGATATCATC+AGG - chr7_2:45293635-45293654 Msa1059310:intron 35.0%
AAAGGGCTATGATATCATCA+GGG - chr7_2:45293636-45293655 Msa1059310:intron 35.0%
AGAAGCTAATGACCAACTTA+AGG - chr7_2:45293745-45293764 Msa1059310:intron 35.0%
GAAGCTAATGACCAACTTAA+GGG - chr7_2:45293746-45293765 Msa1059310:intron 35.0%
CTTAAACATGTGTACACCAA+AGG + chr7_2:45293985-45294004 None:intergenic 35.0%
! CAAGGGAAGCATGTGTTTAT+TGG - chr7_2:45291640-45291659 Msa1059310:intron 40.0%
AGAGAACATGATAAGGAGTC+TGG - chr7_2:45291736-45291755 Msa1059310:intron 40.0%
AATTAACAGCAGGATGGCAT+TGG + chr7_2:45291767-45291786 None:intergenic 40.0%
GCCATCCTGCTGTTAATTAT+AGG - chr7_2:45291769-45291788 Msa1059310:three_prime_UTR 40.0%
GCCTATAATTAACAGCAGGA+TGG + chr7_2:45291773-45291792 None:intergenic 40.0%
!! TTTGTTTCCAGGGTACTGTT+AGG - chr7_2:45291933-45291952 Msa1059310:three_prime_UTR 40.0%
GTAAGACAGTTGAAGAAGTG+TGG + chr7_2:45292220-45292239 None:intergenic 40.0%
CTGTCTTACATCACATCTCA+AGG - chr7_2:45292231-45292250 Msa1059310:intron 40.0%
TTTCAACCAAATGAGCTCAC+AGG + chr7_2:45292315-45292334 None:intergenic 40.0%
CTCATGAAAAAACAGACCAG+AGG + chr7_2:45292417-45292436 None:intergenic 40.0%
ATTCCTTCTAATGCAACCTG+AGG - chr7_2:45292720-45292739 Msa1059310:intron 40.0%
! TTTCCTCAGGTTGCATTAGA+AGG + chr7_2:45292726-45292745 None:intergenic 40.0%
CTCTGATTATCTTTAGCGAC+AGG - chr7_2:45292998-45293017 Msa1059310:intron 40.0%
TTGCAAAACCATTGAAGCGT+AGG - chr7_2:45293192-45293211 Msa1059310:intron 40.0%
TGCTATGCTCATTCAGATAG+AGG + chr7_2:45293258-45293277 None:intergenic 40.0%
AATAGTGTTAGGAACCCAAG+AGG - chr7_2:45293479-45293498 Msa1059310:three_prime_UTR 40.0%
TGATATCATCAGGGTGAGTT+TGG - chr7_2:45293645-45293664 Msa1059310:intron 40.0%
! CTAGTTGTTCTTTTGTCGAC+AGG - chr7_2:45293679-45293698 Msa1059310:intron 40.0%
ACAGGAGTTGAAGTAGAGAA+AGG - chr7_2:45293697-45293716 Msa1059310:intron 40.0%
GATGATGCTTTCACCGTTAA+TGG + chr7_2:45293830-45293849 None:intergenic 40.0%
! AAAGGCATGTGTTACGTCAA+TGG - chr7_2:45293866-45293885 Msa1059310:intron 40.0%
TGATAGCTTGACATTGCCTT+TGG - chr7_2:45293966-45293985 Msa1059310:three_prime_UTR 40.0%
TTAGGCAAATCAACAACTGC+TGG - chr7_2:45294056-45294075 Msa1059310:three_prime_UTR 40.0%
GGTTCCAATCAGACAAGATC+TGG - chr7_2:45291446-45291465 Msa1059310:three_prime_UTR 45.0%
CAATCAGACAAGATCTGGTC+CGG - chr7_2:45291451-45291470 Msa1059310:three_prime_UTR 45.0%
CTTCTAACCGTATCTCACAC+CGG + chr7_2:45291504-45291523 None:intergenic 45.0%
CGGTTAGAAGATCCCAACTT+CGG - chr7_2:45291514-45291533 Msa1059310:three_prime_UTR 45.0%
! TGTTTTTCCCTGTCAGTGTG+AGG - chr7_2:45291558-45291577 Msa1059310:three_prime_UTR 45.0%
! GTTTTTCCCTGTCAGTGTGA+GGG - chr7_2:45291559-45291578 Msa1059310:three_prime_UTR 45.0%
! TTGGATTAGGGTTAACGGAG+AGG - chr7_2:45291659-45291678 Msa1059310:intron 45.0%
AAGTTTGCCTAACAGTACCC+TGG + chr7_2:45291943-45291962 None:intergenic 45.0%
TGAATACAAGGTCGTGGCAT+TGG - chr7_2:45292286-45292305 Msa1059310:intron 45.0%
AGATTTAGCCTGTCGAGTGA+TGG - chr7_2:45292886-45292905 Msa1059310:intron 45.0%
GTAATGTTCCATCACTCGAC+AGG + chr7_2:45292897-45292916 None:intergenic 45.0%
ACTGCCAAAACGCAAGTCAT+AGG - chr7_2:45292915-45292934 Msa1059310:intron 45.0%
! CATACTCTGTGTCGGTACAA+AGG + chr7_2:45293025-45293044 None:intergenic 45.0%
!!! ACTTTAAAATAATATTTTAT+TGG - chr7_2:45292465-45292484 Msa1059310:intron 5.0%
!!! TTTTTAACAATATTATATTT+TGG + chr7_2:45293377-45293396 None:intergenic 5.0%
TTAGCCGCATTTGTAACCGC+CGG + chr7_2:45291425-45291444 None:intergenic 50.0%
GCGGTTACAAATGCGGCTAA+TGG - chr7_2:45291425-45291444 Msa1059310:three_prime_UTR 50.0%
CGGACCAGATCTTGTCTGAT+TGG + chr7_2:45291453-45291472 None:intergenic 50.0%
ACTGAACCCTCACACTGACA+GGG + chr7_2:45291568-45291587 None:intergenic 50.0%
AACTGAACCCTCACACTGAC+AGG + chr7_2:45291569-45291588 None:intergenic 50.0%
GTGTGAGGGTTCAGTTGAAC+TGG - chr7_2:45291573-45291592 Msa1059310:three_prime_UTR 50.0%
TGGACAACGACAACACTCGA+CGG + chr7_2:45292200-45292219 None:intergenic 50.0%
TGGTGACCTGTGAGCTCATT+TGG - chr7_2:45292306-45292325 Msa1059310:intron 50.0%
GCGGCATTGCATATTACCTC+TGG - chr7_2:45292398-45292417 Msa1059310:intron 50.0%
GACGGACATGCATGTGCAAA+AGG + chr7_2:45292837-45292856 None:intergenic 50.0%
TCAACAACTGCTGGTGTACG+TGG - chr7_2:45294065-45294084 Msa1059310:three_prime_UTR 50.0%
TTCAGCACTGCTAAGACTCG+AGG - chr7_2:45294097-45294116 Msa1059310:three_prime_UTR 50.0%
ACCTCCGGCGGTTACAAATG+CGG - chr7_2:45291418-45291437 Msa1059310:three_prime_UTR 55.0%
ACCGTATCTCACACCGGTCA+CGG + chr7_2:45291498-45291517 None:intergenic 55.0%
GCGAAGAGATCGCCGAAGTT+GGG + chr7_2:45291529-45291548 None:intergenic 55.0%
AGCGAAGAGATCGCCGAAGT+TGG + chr7_2:45291530-45291549 None:intergenic 55.0%
ATCCCGCCACGAACAACCTC+CGG - chr7_2:45291403-45291422 Msa1059310:three_prime_UTR 60.0%
TAACCGCCGGAGGTTGTTCG+TGG + chr7_2:45291412-45291431 None:intergenic 60.0%
TATCTCACACCGGTCACGGC+GGG + chr7_2:45291494-45291513 None:intergenic 60.0%
GTATCTCACACCGGTCACGG+CGG + chr7_2:45291495-45291514 None:intergenic 60.0%
GCCGTGACCGGTGTGAGATA+CGG - chr7_2:45291494-45291513 Msa1059310:three_prime_UTR 60.0%
GCCGCATTTGTAACCGCCGG+AGG + chr7_2:45291422-45291441 None:intergenic 65.0%
CGCCGGAGGTTGTTCGTGGC+GGG + chr7_2:45291408-45291427 None:intergenic 70.0%
CCGCCGGAGGTTGTTCGTGG+CGG + chr7_2:45291409-45291428 None:intergenic 70.0%
CCGCCACGAACAACCTCCGG+CGG - chr7_2:45291406-45291425 Msa1059310:three_prime_UTR 70.0%
GGACACAACGCGGAGACGGC+CGG + chr7_2:45291473-45291492 None:intergenic 70.0%
GGCGGGACACAACGCGGAGA+CGG + chr7_2:45291477-45291496 None:intergenic 70.0%
GGTCACGGCGGGACACAACG+CGG + chr7_2:45291483-45291502 None:intergenic 70.0%
GCGTTGTGTCCCGCCGTGAC+CGG - chr7_2:45291482-45291501 Msa1059310:three_prime_UTR 70.0%
Chromosome Type Strat End Strand Name
chr7_2 gene 45291352 45294341 45291352 ID=Msa1059310;Name=Msa1059310
chr7_2 mRNA 45291352 45294341 45291352 ID=Msa1059310-mRNA-1;Parent=Msa1059310;Name=Msa1059310-mRNA-1;_AED=0.32;_eAED=0.32;_QI=83|0.83|0.71|1|0.33|0.42|7|780|21
chr7_2 exon 45291352 45291633 45291352 ID=Msa1059310-mRNA-1:exon:8244;Parent=Msa1059310-mRNA-1
chr7_2 exon 45291755 45291832 45291755 ID=Msa1059310-mRNA-1:exon:8243;Parent=Msa1059310-mRNA-1
chr7_2 exon 45291926 45291992 45291926 ID=Msa1059310-mRNA-1:exon:8242;Parent=Msa1059310-mRNA-1
chr7_2 exon 45292757 45292805 45292757 ID=Msa1059310-mRNA-1:exon:8241;Parent=Msa1059310-mRNA-1
chr7_2 exon 45293441 45293515 45293441 ID=Msa1059310-mRNA-1:exon:8240;Parent=Msa1059310-mRNA-1
chr7_2 exon 45293896 45294119 45293896 ID=Msa1059310-mRNA-1:exon:8239;Parent=Msa1059310-mRNA-1
chr7_2 exon 45294188 45294341 45294188 ID=Msa1059310-mRNA-1:exon:8238;Parent=Msa1059310-mRNA-1
chr7_2 five_prime_UTR 45294259 45294341 45294259 ID=Msa1059310-mRNA-1:five_prime_utr;Parent=Msa1059310-mRNA-1
chr7_2 CDS 45294193 45294258 45294193 ID=Msa1059310-mRNA-1:cds;Parent=Msa1059310-mRNA-1
chr7_2 three_prime_UTR 45294188 45294192 45294188 ID=Msa1059310-mRNA-1:three_prime_utr;Parent=Msa1059310-mRNA-1
chr7_2 three_prime_UTR 45293896 45294119 45293896 ID=Msa1059310-mRNA-1:three_prime_utr;Parent=Msa1059310-mRNA-1
chr7_2 three_prime_UTR 45293441 45293515 45293441 ID=Msa1059310-mRNA-1:three_prime_utr;Parent=Msa1059310-mRNA-1
chr7_2 three_prime_UTR 45292757 45292805 45292757 ID=Msa1059310-mRNA-1:three_prime_utr;Parent=Msa1059310-mRNA-1
chr7_2 three_prime_UTR 45291926 45291992 45291926 ID=Msa1059310-mRNA-1:three_prime_utr;Parent=Msa1059310-mRNA-1
chr7_2 three_prime_UTR 45291755 45291832 45291755 ID=Msa1059310-mRNA-1:three_prime_utr;Parent=Msa1059310-mRNA-1
chr7_2 three_prime_UTR 45291352 45291633 45291352 ID=Msa1059310-mRNA-1:three_prime_utr;Parent=Msa1059310-mRNA-1
Gene Sequence

>Msa1059310

ATGCGGCTAATGGTTCCAATCAGACAAGATCTGGTCCGGCCGTCTCCGCGTTGTGTCCCGCCGTGA
Protein sequence

>Msa1059310

MRLMVPIRQDLVRPSPRCVPP*