Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1226100 | Msa1284640 | 0.924655 | 5.269885e-90 | -8.615850e-47 |
| Msa1226100 | Msa1320580 | 0.910686 | 1.418376e-82 | -8.615850e-47 |
| Msa1226100 | Msa1448020 | 0.812764 | 3.598497e-51 | -8.615850e-47 |
| Msa1226100 | Msa1455280 | 0.822069 | 2.885733e-53 | -8.615850e-47 |
| Msa0414020 | Msa1226100 | 0.815737 | 7.929705e-52 | -8.615850e-47 |
| Msa0444040 | Msa1226100 | 0.839004 | 2.053441e-57 | -8.615850e-47 |
| Msa0990830 | Msa1226100 | 0.907521 | 4.632737e-81 | -8.615850e-47 |
| Msa1020100 | Msa1226100 | 0.913175 | 8.345159e-84 | -8.615850e-47 |
| Msa1059310 | Msa1226100 | 0.918315 | 1.813588e-86 | -8.615850e-47 |
| Msa0287350 | Msa1226100 | 0.803826 | 2.896409e-49 | -8.615850e-47 |
| Msa0485890 | Msa1226100 | 0.989366 | 8.182676e-178 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 94 sgRNAs with CRISPR-Local
Find 179 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAAGTTTAATTGACAATATT+TGG | 0.125399 | 8_1:+91845646 | None:intergenic |
| ATTAAAACTTAAGAATTAAT+TGG | 0.153202 | 8_1:-91842614 | Msa1226100:three_prime_UTR |
| AACGGAATGGGTTAAAATTA+TGG | 0.195683 | 8_1:+91845471 | None:intergenic |
| AAAATGGGGTTTCATGGTTT+TGG | 0.235392 | 8_1:+91845596 | None:intergenic |
| AACAAGGGTGGTAGAGATTT+AGG | 0.237128 | 8_1:+91845541 | None:intergenic |
| GAAGGGAAGCATGTGTTTAT+TGG | 0.254125 | 8_1:-91845097 | Msa1226100:three_prime_UTR |
| TTTGTAGACCTTCAAGTTAT+AGG | 0.264756 | 8_1:-91842582 | Msa1226100:three_prime_UTR |
| AAGCATGTGTTTATTGGATT+AGG | 0.266751 | 8_1:-91845091 | Msa1226100:three_prime_UTR |
| ACTCTTCACATTAATGCTTT+TGG | 0.278094 | 8_1:-91845669 | None:intergenic |
| AGTGAGATTGAGGAATAAAA+TGG | 0.312064 | 8_1:+91845580 | None:intergenic |
| AGGAATAAAATGGGGTTTCA+TGG | 0.315510 | 8_1:+91845590 | None:intergenic |
| CAAGTTATAGGTTATCCTAT+TGG | 0.318712 | 8_1:-91842570 | Msa1226100:three_prime_UTR |
| AGCATGTGTTTATTGGATTA+GGG | 0.332772 | 8_1:-91845090 | Msa1226100:three_prime_UTR |
| CTTGTCCTATATATATGTTT+TGG | 0.337556 | 8_1:+91845366 | None:intergenic |
| TTCTTCCAAAACATATATAT+AGG | 0.349435 | 8_1:-91845371 | Msa1226100:exon |
| CTTCTAAAGATTGTGTATAA+TGG | 0.357548 | 8_1:-91842822 | Msa1226100:intron |
| GAGCAACTGTAGAAAAGAAA+TGG | 0.357579 | 8_1:+91845402 | None:intergenic |
| TTAAAACTTAAGAATTAATT+GGG | 0.366320 | 8_1:-91842613 | Msa1226100:three_prime_UTR |
| GGTGAGAGCTTAAATGAAAC+TGG | 0.376751 | 8_1:+91845493 | None:intergenic |
| AATACCTATGACTTGCGTTT+TGG | 0.377633 | 8_1:+91843819 | None:intergenic |
| GAGATTTAGGTTTCAATTTG+AGG | 0.394504 | 8_1:+91845554 | None:intergenic |
| AGAAGCTAATGACCAACTTA+AGG | 0.395849 | 8_1:-91842994 | Msa1226100:three_prime_UTR |
| ACGGAATGGGTTAAAATTAT+GGG | 0.402922 | 8_1:+91845472 | None:intergenic |
| TGTGGGAACGAGACTGGAAT+TGG | 0.409476 | 8_1:+91845622 | None:intergenic |
| AGTATTATCAATCATCCAAT+AGG | 0.414360 | 8_1:+91842555 | None:intergenic |
| TGCTGTTAATCATAGGCTTA+AGG | 0.419472 | 8_1:-91844961 | Msa1226100:intron |
| TGGAGTTGTGGGAACGAGAC+TGG | 0.421945 | 8_1:+91845616 | None:intergenic |
| GTGAGATTGAGGAATAAAAT+GGG | 0.426659 | 8_1:+91845581 | None:intergenic |
| AACTGAACCCTCACACTGAC+CGG | 0.431437 | 8_1:+91845171 | None:intergenic |
| TGTGAGAAGAGAACATGATA+AGG | 0.442504 | 8_1:-91845008 | Msa1226100:three_prime_UTR |
| GAAGCTAATGACCAACTTAA+GGG | 0.443177 | 8_1:-91842993 | Msa1226100:intron |
| GCTTAAATGAAACTGGATAA+AGG | 0.443636 | 8_1:+91845500 | None:intergenic |
| TTTCTGCTTAAGATTGAAGA+TGG | 0.446632 | 8_1:-91845121 | Msa1226100:three_prime_UTR |
| AGCGAAGAGATCGCCGGAGT+TGG | 0.447638 | 8_1:+91845210 | None:intergenic |
| GCGTTGTGTCCCGCCGTGAC+CGG | 0.447886 | 8_1:-91845255 | Msa1226100:three_prime_UTR |
| GTGTGAGGGTTCAGTTGAAC+TGG | 0.448765 | 8_1:-91845164 | Msa1226100:three_prime_UTR |
| TAGGATAACCTATAACTTGA+AGG | 0.448867 | 8_1:+91842574 | None:intergenic |
| ACTGCCAAAACGCAAGTCAT+AGG | 0.449501 | 8_1:-91843823 | Msa1226100:intron |
| AGATTTAGGTTTCAATTTGA+GGG | 0.451063 | 8_1:+91845555 | None:intergenic |
| GCGAAGAGATCGCCGGAGTT+GGG | 0.452093 | 8_1:+91845211 | None:intergenic |
| GTTTATTGGATTAGGGTTAA+CGG | 0.452324 | 8_1:-91845083 | Msa1226100:three_prime_UTR |
| CGCCGGAGGTTGTTCGTGGC+GGG | 0.452665 | 8_1:+91845332 | None:intergenic |
| AAAGGCATGTGTTACGTCAA+TGG | 0.457053 | 8_1:-91842873 | Msa1226100:three_prime_UTR |
| GCCATCCTGCTGTTAATCAT+AGG | 0.463255 | 8_1:-91844968 | Msa1226100:three_prime_UTR |
| GGTTCCAATCAGACAAGATC+TGG | 0.463783 | 8_1:-91845291 | Msa1226100:three_prime_UTR |
| AGAGAACATGATAAGGAGTC+TGG | 0.464167 | 8_1:-91845001 | Msa1226100:three_prime_UTR |
| GCCGTGACCGGTGTGAGATA+CGG | 0.467324 | 8_1:-91845243 | Msa1226100:three_prime_UTR |
| GGACACAACGCGGAGACGGC+CGG | 0.477578 | 8_1:+91845267 | None:intergenic |
| TTTGAGGGAAAGTGAGATTG+AGG | 0.478972 | 8_1:+91845570 | None:intergenic |
| ATCCCGCCACGAACAACCTC+CGG | 0.483393 | 8_1:-91845334 | Msa1226100:three_prime_UTR |
| TTAGGCAAATCAACAACTGC+TGG | 0.486080 | 8_1:-91842683 | Msa1226100:intron |
| TAACCGCCGGAGGTTGTTCG+TGG | 0.487228 | 8_1:+91845328 | None:intergenic |
| CGGACCAGATCTTGTCTGAT+TGG | 0.492781 | 8_1:+91845287 | None:intergenic |
| TAAAGTCATTACCCTTAAGT+TGG | 0.492910 | 8_1:+91842982 | None:intergenic |
| TTTCAATTTGAATTGTACTC+TGG | 0.494796 | 8_1:-91842487 | Msa1226100:three_prime_UTR |
| GCGGTTACAAATGCGGCTAA+TGG | 0.502661 | 8_1:-91845312 | Msa1226100:three_prime_UTR |
| AGAAAAGAAATGGGTCGAAA+AGG | 0.503425 | 8_1:+91845412 | None:intergenic |
| CAATCAGACAAGATCTGGTC+CGG | 0.506501 | 8_1:-91845286 | Msa1226100:three_prime_UTR |
| GGCGGGACACAACGCGGAGA+CGG | 0.509066 | 8_1:+91845263 | None:intergenic |
| GATTAACAGCAGGATGGCAT+TGG | 0.514115 | 8_1:+91844973 | None:intergenic |
| AGCAACTGTAGAAAAGAAAT+GGG | 0.514548 | 8_1:+91845403 | None:intergenic |
| AGTGAAGAACGGTGGAGAAA+CGG | 0.515942 | 8_1:+91845453 | None:intergenic |
| CTTAAGATTGAAGATGGAGA+AGG | 0.523506 | 8_1:-91845115 | Msa1226100:three_prime_UTR |
| AGATTTAGCCTGTCGAGTGA+TGG | 0.527799 | 8_1:-91843852 | Msa1226100:three_prime_UTR |
| ACCGTATCTCACACCGGTCA+CGG | 0.531370 | 8_1:+91845242 | None:intergenic |
| CATAATCCTTCGATTGAACA+AGG | 0.536572 | 8_1:+91845525 | None:intergenic |
| TATCTCACACCGGTCACGGC+GGG | 0.540870 | 8_1:+91845246 | None:intergenic |
| GTAATGTTCCATCACTCGAC+AGG | 0.545474 | 8_1:+91843844 | None:intergenic |
| ACAGGAGTTGAAGTAGAGAA+AGG | 0.547321 | 8_1:-91843042 | Msa1226100:intron |
| ACTGAACCCTCACACTGACC+GGG | 0.558637 | 8_1:+91845172 | None:intergenic |
| TACCACCCTTGTTCAATCGA+AGG | 0.561434 | 8_1:-91845531 | Msa1226100:five_prime_UTR |
| GAACGGTGGAGAAACGGAAT+GGG | 0.566786 | 8_1:+91845459 | None:intergenic |
| CCGCCGGAGGTTGTTCGTGG+CGG | 0.571890 | 8_1:+91845331 | None:intergenic |
| TCAACAACTGCTGGTGTACG+TGG | 0.580588 | 8_1:-91842674 | Msa1226100:three_prime_UTR |
| AGAACGGTGGAGAAACGGAA+TGG | 0.592306 | 8_1:+91845458 | None:intergenic |
| TTGGATTAGGGTTAACGGAG+AGG | 0.594029 | 8_1:-91845078 | Msa1226100:three_prime_UTR |
| TTAAGATTGAAGATGGAGAA+GGG | 0.597144 | 8_1:-91845114 | Msa1226100:three_prime_UTR |
| TTAAGCCTATGATTAACAGC+AGG | 0.600310 | 8_1:+91844963 | None:intergenic |
| TGAGATTGAGGAATAAAATG+GGG | 0.611914 | 8_1:+91845582 | None:intergenic |
| GCCGCATTTGTAACCGCCGG+AGG | 0.612310 | 8_1:+91845318 | None:intergenic |
| ACCTCCGGCGGTTACAAATG+CGG | 0.616884 | 8_1:-91845319 | Msa1226100:three_prime_UTR |
| TTAGCCGCATTTGTAACCGC+CGG | 0.625611 | 8_1:+91845315 | None:intergenic |
| ACACGCAGCGAAGAGATCGC+CGG | 0.626051 | 8_1:+91845204 | None:intergenic |
| ATCCTTCGATTGAACAAGGG+TGG | 0.639676 | 8_1:+91845529 | None:intergenic |
| GCCTATGATTAACAGCAGGA+TGG | 0.640269 | 8_1:+91844967 | None:intergenic |
| TTCAGCACTGCTAAGACTCG+AGG | 0.650870 | 8_1:-91842642 | Msa1226100:three_prime_UTR |
| CGGTTAGAAGATCCCAACTC+CGG | 0.656754 | 8_1:-91845223 | Msa1226100:three_prime_UTR |
| CAACAAAGAGTGAAGAACGG+TGG | 0.678077 | 8_1:+91845445 | None:intergenic |
| CTTCTAACCGTATCTCACAC+CGG | 0.687609 | 8_1:+91845236 | None:intergenic |
| GAACAACAAAGAGTGAAGAA+CGG | 0.690550 | 8_1:+91845442 | None:intergenic |
| CCGCCACGAACAACCTCCGG+CGG | 0.697916 | 8_1:-91845331 | Msa1226100:three_prime_UTR |
| GGTCACGGCGGGACACAACG+CGG | 0.706808 | 8_1:+91845257 | None:intergenic |
| ATAATCCTTCGATTGAACAA+GGG | 0.716702 | 8_1:+91845526 | None:intergenic |
| GTATCTCACACCGGTCACGG+CGG | 0.748302 | 8_1:+91845245 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTAAAACTTAAGAATTAAT+TGG | - | chr8_1:91845467-91845486 | Msa1226100:CDS | 10.0% |
| !! | TTAAAACTTAAGAATTAATT+GGG | - | chr8_1:91845468-91845487 | Msa1226100:CDS | 10.0% |
| !! | AAAGTTTAATTGACAATATT+TGG | + | chr8_1:91842438-91842457 | None:intergenic | 15.0% |
| !!! | ACTATTTTTCAACTAAAAAT+TGG | + | chr8_1:91843209-91843228 | None:intergenic | 15.0% |
| !! | AACTTAAACTTTGTAAAAAT+AGG | - | chr8_1:91843302-91843321 | Msa1226100:intron | 15.0% |
| !! | TACAATTAGAAAATTGAATA+AGG | + | chr8_1:91843898-91843917 | None:intergenic | 15.0% |
| !! | TTATAAAAAAATGAGACATA+AGG | - | chr8_1:91843956-91843975 | Msa1226100:intron | 15.0% |
| !! | TATAAAAAAATGAGACATAA+GGG | - | chr8_1:91843957-91843976 | Msa1226100:intron | 15.0% |
| !!! | TATATATGTTTTGGAAGAAA+AGG | + | chr8_1:91842709-91842728 | None:intergenic | 20.0% |
| !! | TTCTTCCAAAACATATATAT+AGG | - | chr8_1:91842710-91842729 | Msa1226100:intron | 20.0% |
| !!! | CTTTATTTCGAATTTGTTAA+TGG | - | chr8_1:91844913-91844932 | Msa1226100:intron | 20.0% |
| !!! | AACAATTTTTATGCCATTAA+CGG | - | chr8_1:91845156-91845175 | Msa1226100:three_prime_UTR | 20.0% |
| !!! | ATTTTGTACAAAAAAACACA+AGG | + | chr8_1:91845361-91845380 | None:intergenic | 20.0% |
| !!! | GTTAGATTTTATGTTTTTGA+TGG | - | chr8_1:91845559-91845578 | Msa1226100:five_prime_UTR | 20.0% |
| !! | AGATTTAGGTTTCAATTTGA+GGG | + | chr8_1:91842529-91842548 | None:intergenic | 25.0% |
| !! | CTTGTCCTATATATATGTTT+TGG | + | chr8_1:91842718-91842737 | None:intergenic | 25.0% |
| !! | TATGCATAAAATTTGTTTCC+AGG | - | chr8_1:91843266-91843285 | Msa1226100:intron | 25.0% |
| !! | ATGCATAAAATTTGTTTCCA+GGG | - | chr8_1:91843267-91843286 | Msa1226100:intron | 25.0% |
| !! | TATTTCTTAGTTGGTACATT+TGG | - | chr8_1:91843511-91843530 | Msa1226100:intron | 25.0% |
| !! | ATTTCTTAGTTGGTACATTT+GGG | - | chr8_1:91843512-91843531 | Msa1226100:intron | 25.0% |
| ! | TGTTACTATAGTTGAATACA+AGG | - | chr8_1:91843617-91843636 | Msa1226100:intron | 25.0% |
| ! | CTAATATGTGAATAATCAAG+CGG | - | chr8_1:91843721-91843740 | Msa1226100:intron | 25.0% |
| !! | TAATATGACTTGTGAAATGA+AGG | - | chr8_1:91843923-91843942 | Msa1226100:intron | 25.0% |
| !! | AATATGACTTGTGAAATGAA+GGG | - | chr8_1:91843924-91843943 | Msa1226100:intron | 25.0% |
| !! | ACATTTTACTGAAGAAATTC+AGG | + | chr8_1:91844576-91844595 | None:intergenic | 25.0% |
| !!! | TATATATGCTTTGTTTTGAC+AGG | + | chr8_1:91844664-91844683 | None:intergenic | 25.0% |
| ! | CAAAGCATATATATACGTAT+TGG | - | chr8_1:91844671-91844690 | Msa1226100:intron | 25.0% |
| ! | CTGAAATTAGAGTTCAAAAA+GGG | - | chr8_1:91844961-91844980 | Msa1226100:intron | 25.0% |
| !! | CTTCTAAAGATTGTGTATAA+TGG | - | chr8_1:91845259-91845278 | Msa1226100:three_prime_UTR | 25.0% |
| !! | TTTTGTACAAAATCAAACCT+TGG | - | chr8_1:91845368-91845387 | Msa1226100:exon | 25.0% |
| ! | AGTATTATCAATCATCCAAT+AGG | + | chr8_1:91845529-91845548 | None:intergenic | 25.0% |
| !!! | TATGTTTTTGATGGAACTAT+TGG | - | chr8_1:91845568-91845587 | Msa1226100:five_prime_UTR | 25.0% |
| ! | TTTCAATTTGAATTGTACTC+TGG | - | chr8_1:91845594-91845613 | Msa1226100:five_prime_UTR | 25.0% |
| TGAGATTGAGGAATAAAATG+GGG | + | chr8_1:91842502-91842521 | None:intergenic | 30.0% | |
| GTGAGATTGAGGAATAAAAT+GGG | + | chr8_1:91842503-91842522 | None:intergenic | 30.0% | |
| AGTGAGATTGAGGAATAAAA+TGG | + | chr8_1:91842504-91842523 | None:intergenic | 30.0% | |
| ! | GAGATTTAGGTTTCAATTTG+AGG | + | chr8_1:91842530-91842549 | None:intergenic | 30.0% |
| ATAATCCTTCGATTGAACAA+GGG | + | chr8_1:91842558-91842577 | None:intergenic | 30.0% | |
| GCTTAAATGAAACTGGATAA+AGG | + | chr8_1:91842584-91842603 | None:intergenic | 30.0% | |
| !! | ACGGAATGGGTTAAAATTAT+GGG | + | chr8_1:91842612-91842631 | None:intergenic | 30.0% |
| !! | AACGGAATGGGTTAAAATTA+TGG | + | chr8_1:91842613-91842632 | None:intergenic | 30.0% |
| AGCAACTGTAGAAAAGAAAT+GGG | + | chr8_1:91842681-91842700 | None:intergenic | 30.0% | |
| TTTCTGCTTAAGATTGAAGA+TGG | - | chr8_1:91842960-91842979 | Msa1226100:intron | 30.0% | |
| TTAAGATTGAAGATGGAGAA+GGG | - | chr8_1:91842967-91842986 | Msa1226100:intron | 30.0% | |
| AAGCATGTGTTTATTGGATT+AGG | - | chr8_1:91842990-91843009 | Msa1226100:intron | 30.0% | |
| AGCATGTGTTTATTGGATTA+GGG | - | chr8_1:91842991-91843010 | Msa1226100:intron | 30.0% | |
| ! | GTTTATTGGATTAGGGTTAA+CGG | - | chr8_1:91842998-91843017 | Msa1226100:three_prime_UTR | 30.0% |
| ! | TCTCATGTTTGTGAACTTTT+AGG | - | chr8_1:91843359-91843378 | Msa1226100:intron | 30.0% |
| TTGCTGTGATATTTCTTAGT+TGG | - | chr8_1:91843502-91843521 | Msa1226100:intron | 30.0% | |
| AGTAACACATGTAAAGAGAA+GGG | + | chr8_1:91843604-91843623 | None:intergenic | 30.0% | |
| TAGTAACACATGTAAAGAGA+AGG | + | chr8_1:91843605-91843624 | None:intergenic | 30.0% | |
| GTCTTAAAAGACAACACAAA+TGG | - | chr8_1:91843696-91843715 | Msa1226100:intron | 30.0% | |
| GTTGCAAGCTATAAACTATA+AGG | - | chr8_1:91844109-91844128 | Msa1226100:intron | 30.0% | |
| CAGAAAATTGAATGAACAGA+CGG | + | chr8_1:91844198-91844217 | None:intergenic | 30.0% | |
| TTATAATACGTACTCTGTGT+CGG | + | chr8_1:91844376-91844395 | None:intergenic | 30.0% | |
| CAATTTCTTCTGTCAATATC+TGG | - | chr8_1:91844468-91844487 | Msa1226100:intron | 30.0% | |
| AACTAATGAAGTTACCTCTT+GGG | + | chr8_1:91844838-91844857 | None:intergenic | 30.0% | |
| AAACTAATGAAGTTACCTCT+TGG | + | chr8_1:91844839-91844858 | None:intergenic | 30.0% | |
| AAGAGGTAACTTCATTAGTT+TGG | - | chr8_1:91844838-91844857 | Msa1226100:intron | 30.0% | |
| GCTGAAATTAGAGTTCAAAA+AGG | - | chr8_1:91844960-91844979 | Msa1226100:intron | 30.0% | |
| TAAAGTCATTACCCTTAAGT+TGG | + | chr8_1:91845102-91845121 | None:intergenic | 30.0% | |
| TCTGCTTTGATAGAGAAAAA+AGG | - | chr8_1:91845190-91845209 | Msa1226100:three_prime_UTR | 30.0% | |
| TCAAACCTTGGATATTTCTT+AGG | - | chr8_1:91845380-91845399 | Msa1226100:CDS | 30.0% | |
| ATTTGCCTAAGAAATATCCA+AGG | + | chr8_1:91845388-91845407 | None:intergenic | 30.0% | |
| ! | TTTGTAGACCTTCAAGTTAT+AGG | - | chr8_1:91845499-91845518 | Msa1226100:CDS | 30.0% |
| TAGGATAACCTATAACTTGA+AGG | + | chr8_1:91845510-91845529 | None:intergenic | 30.0% | |
| CAAGTTATAGGTTATCCTAT+TGG | - | chr8_1:91845511-91845530 | Msa1226100:exon | 30.0% | |
| !!! | TTTCATGGTTTTGGAGTTGT+GGG | + | chr8_1:91842479-91842498 | None:intergenic | 35.0% |
| ! | AAAATGGGGTTTCATGGTTT+TGG | + | chr8_1:91842488-91842507 | None:intergenic | 35.0% |
| AGGAATAAAATGGGGTTTCA+TGG | + | chr8_1:91842494-91842513 | None:intergenic | 35.0% | |
| CATAATCCTTCGATTGAACA+AGG | + | chr8_1:91842559-91842578 | None:intergenic | 35.0% | |
| GAACAACAAAGAGTGAAGAA+CGG | + | chr8_1:91842642-91842661 | None:intergenic | 35.0% | |
| AGAAAAGAAATGGGTCGAAA+AGG | + | chr8_1:91842672-91842691 | None:intergenic | 35.0% | |
| GAGCAACTGTAGAAAAGAAA+TGG | + | chr8_1:91842682-91842701 | None:intergenic | 35.0% | |
| CTTAAGATTGAAGATGGAGA+AGG | - | chr8_1:91842966-91842985 | Msa1226100:intron | 35.0% | |
| TGTGAGAAGAGAACATGATA+AGG | - | chr8_1:91843073-91843092 | Msa1226100:intron | 35.0% | |
| TTAAGCCTATGATTAACAGC+AGG | + | chr8_1:91843121-91843140 | None:intergenic | 35.0% | |
| TGCTGTTAATCATAGGCTTA+AGG | - | chr8_1:91843120-91843139 | Msa1226100:intron | 35.0% | |
| ! | TAGACATTGGTTAGACACAT+GGG | + | chr8_1:91843334-91843353 | None:intergenic | 35.0% |
| ! | ATAGACATTGGTTAGACACA+TGG | + | chr8_1:91843335-91843354 | None:intergenic | 35.0% |
| ACATGAGACAGTATAGACAT+TGG | + | chr8_1:91843347-91843366 | None:intergenic | 35.0% | |
| TATAGTTGAATACAAGGTCG+TGG | - | chr8_1:91843623-91843642 | Msa1226100:intron | 35.0% | |
| AGACATAAGGGCTAAAAGAA+AGG | - | chr8_1:91843969-91843988 | Msa1226100:intron | 35.0% | |
| TGATATGCATGTTAAGAACG+AGG | + | chr8_1:91844020-91844039 | None:intergenic | 35.0% | |
| CAACACATATATCTTTCCTC+AGG | + | chr8_1:91844082-91844101 | None:intergenic | 35.0% | |
| !! | AATACCTATGACTTGCGTTT+TGG | + | chr8_1:91844265-91844284 | None:intergenic | 35.0% |
| TCATATGCACATTCAGAAAG+AGG | + | chr8_1:91844305-91844324 | None:intergenic | 35.0% | |
| ATTGACACACATTCGTAAAG+AGG | + | chr8_1:91844452-91844471 | None:intergenic | 35.0% | |
| TTCTTCTGTCAATATCTGGA+TGG | - | chr8_1:91844472-91844491 | Msa1226100:intron | 35.0% | |
| ! | GTCTTTTCTGATATGTTCTG+CGG | - | chr8_1:91844494-91844513 | Msa1226100:intron | 35.0% |
| !!! | TTTTAGAACCTACGCTTCAA+TGG | + | chr8_1:91844546-91844565 | None:intergenic | 35.0% |
| AGCTCTCTTGAAATAGTGTT+AGG | - | chr8_1:91844810-91844829 | Msa1226100:intron | 35.0% | |
| ! | AGGTAACTTCATTAGTTTGG+TGG | - | chr8_1:91844841-91844860 | Msa1226100:intron | 35.0% |
| AAAAGGGCTATGATATCATC+AGG | - | chr8_1:91844977-91844996 | Msa1226100:three_prime_UTR | 35.0% | |
| AAAGGGCTATGATATCATCA+GGG | - | chr8_1:91844978-91844997 | Msa1226100:three_prime_UTR | 35.0% | |
| AGAAGCTAATGACCAACTTA+AGG | - | chr8_1:91845087-91845106 | Msa1226100:three_prime_UTR | 35.0% | |
| GAAGCTAATGACCAACTTAA+GGG | - | chr8_1:91845088-91845107 | Msa1226100:three_prime_UTR | 35.0% | |
| CTTAAACATGTGTACACCAA+AGG | + | chr8_1:91845327-91845346 | None:intergenic | 35.0% | |
| !!! | GTTTCATGGTTTTGGAGTTG+TGG | + | chr8_1:91842480-91842499 | None:intergenic | 40.0% |
| TTTGAGGGAAAGTGAGATTG+AGG | + | chr8_1:91842514-91842533 | None:intergenic | 40.0% | |
| AACAAGGGTGGTAGAGATTT+AGG | + | chr8_1:91842543-91842562 | None:intergenic | 40.0% | |
| GGTGAGAGCTTAAATGAAAC+TGG | + | chr8_1:91842591-91842610 | None:intergenic | 40.0% | |
| ! | GAAGGGAAGCATGTGTTTAT+TGG | - | chr8_1:91842984-91843003 | Msa1226100:intron | 40.0% |
| AGAGAACATGATAAGGAGTC+TGG | - | chr8_1:91843080-91843099 | Msa1226100:intron | 40.0% | |
| !! | TTTGTTTCCAGGGTACTGTT+AGG | - | chr8_1:91843277-91843296 | Msa1226100:intron | 40.0% |
| GTAAGACAGTTGAAGAAGTG+TGG | + | chr8_1:91843563-91843582 | None:intergenic | 40.0% | |
| CTGTCTTACATCACATCTCA+AGG | - | chr8_1:91843574-91843593 | Msa1226100:intron | 40.0% | |
| TTTCAACCAAATGAGCTCAC+AGG | + | chr8_1:91843658-91843677 | None:intergenic | 40.0% | |
| CTCATGAAAAAACAGACCAG+AGG | + | chr8_1:91843759-91843778 | None:intergenic | 40.0% | |
| ATTCCTTCTAATGCAACCTG+AGG | - | chr8_1:91844063-91844082 | Msa1226100:intron | 40.0% | |
| ! | TTTCCTCAGGTTGCATTAGA+AGG | + | chr8_1:91844069-91844088 | None:intergenic | 40.0% |
| CTCTGATTATCTTTAGCGAC+AGG | - | chr8_1:91844341-91844360 | Msa1226100:intron | 40.0% | |
| TTGCAAAACCATTGAAGCGT+AGG | - | chr8_1:91844535-91844554 | Msa1226100:intron | 40.0% | |
| TGCTATGCTCATTCAGATAG+AGG | + | chr8_1:91844601-91844620 | None:intergenic | 40.0% | |
| AATAGTGTTAGGAACCCAAG+AGG | - | chr8_1:91844821-91844840 | Msa1226100:intron | 40.0% | |
| TGATATCATCAGGGTGAGTT+TGG | - | chr8_1:91844987-91845006 | Msa1226100:three_prime_UTR | 40.0% | |
| ! | CTAGTTGTTCTTTTGTCGAC+AGG | - | chr8_1:91845021-91845040 | Msa1226100:three_prime_UTR | 40.0% |
| ACAGGAGTTGAAGTAGAGAA+AGG | - | chr8_1:91845039-91845058 | Msa1226100:three_prime_UTR | 40.0% | |
| GATGATGCTTTCACCGTTAA+TGG | + | chr8_1:91845172-91845191 | None:intergenic | 40.0% | |
| ! | AAAGGCATGTGTTACGTCAA+TGG | - | chr8_1:91845208-91845227 | Msa1226100:three_prime_UTR | 40.0% |
| TGATAGCTTGACATTGCCTT+TGG | - | chr8_1:91845308-91845327 | Msa1226100:three_prime_UTR | 40.0% | |
| TTAGGCAAATCAACAACTGC+TGG | - | chr8_1:91845398-91845417 | Msa1226100:CDS | 40.0% | |
| TACCACCCTTGTTCAATCGA+AGG | - | chr8_1:91842550-91842569 | Msa1226100:three_prime_UTR | 45.0% | |
| ATCCTTCGATTGAACAAGGG+TGG | + | chr8_1:91842555-91842574 | None:intergenic | 45.0% | |
| AGTGAAGAACGGTGGAGAAA+CGG | + | chr8_1:91842631-91842650 | None:intergenic | 45.0% | |
| CAACAAAGAGTGAAGAACGG+TGG | + | chr8_1:91842639-91842658 | None:intergenic | 45.0% | |
| GGTTCCAATCAGACAAGATC+TGG | - | chr8_1:91842790-91842809 | Msa1226100:intron | 45.0% | |
| CAATCAGACAAGATCTGGTC+CGG | - | chr8_1:91842795-91842814 | Msa1226100:intron | 45.0% | |
| CTTCTAACCGTATCTCACAC+CGG | + | chr8_1:91842848-91842867 | None:intergenic | 45.0% | |
| !!! | GCTGCGTGTTTTGTTTTTCC+CGG | - | chr8_1:91842891-91842910 | Msa1226100:intron | 45.0% |
| ! | TTGGATTAGGGTTAACGGAG+AGG | - | chr8_1:91843003-91843022 | Msa1226100:three_prime_UTR | 45.0% |
| GATTAACAGCAGGATGGCAT+TGG | + | chr8_1:91843111-91843130 | None:intergenic | 45.0% | |
| GCCATCCTGCTGTTAATCAT+AGG | - | chr8_1:91843113-91843132 | Msa1226100:intron | 45.0% | |
| GCCTATGATTAACAGCAGGA+TGG | + | chr8_1:91843117-91843136 | None:intergenic | 45.0% | |
| AAGTTTGCCTAACAGTACCC+TGG | + | chr8_1:91843287-91843306 | None:intergenic | 45.0% | |
| TGAATACAAGGTCGTGGCAT+TGG | - | chr8_1:91843629-91843648 | Msa1226100:intron | 45.0% | |
| AGATTTAGCCTGTCGAGTGA+TGG | - | chr8_1:91844229-91844248 | Msa1226100:intron | 45.0% | |
| GTAATGTTCCATCACTCGAC+AGG | + | chr8_1:91844240-91844259 | None:intergenic | 45.0% | |
| ACTGCCAAAACGCAAGTCAT+AGG | - | chr8_1:91844258-91844277 | Msa1226100:intron | 45.0% | |
| !!! | ACTTTAAAATAATATTTTAT+TGG | - | chr8_1:91843807-91843826 | Msa1226100:intron | 5.0% |
| !!! | TTTTTAACAATATTATATTT+TGG | + | chr8_1:91844720-91844739 | None:intergenic | 5.0% |
| TGTGGGAACGAGACTGGAAT+TGG | + | chr8_1:91842462-91842481 | None:intergenic | 50.0% | |
| GAACGGTGGAGAAACGGAAT+GGG | + | chr8_1:91842625-91842644 | None:intergenic | 50.0% | |
| AGAACGGTGGAGAAACGGAA+TGG | + | chr8_1:91842626-91842645 | None:intergenic | 50.0% | |
| TTAGCCGCATTTGTAACCGC+CGG | + | chr8_1:91842769-91842788 | None:intergenic | 50.0% | |
| GCGGTTACAAATGCGGCTAA+TGG | - | chr8_1:91842769-91842788 | Msa1226100:intron | 50.0% | |
| CGGACCAGATCTTGTCTGAT+TGG | + | chr8_1:91842797-91842816 | None:intergenic | 50.0% | |
| CGGTTAGAAGATCCCAACTC+CGG | - | chr8_1:91842858-91842877 | Msa1226100:three_prime_UTR | 50.0% | |
| ! | TGTTTTTCCCGGTCAGTGTG+AGG | - | chr8_1:91842902-91842921 | Msa1226100:intron | 50.0% |
| ! | GTTTTTCCCGGTCAGTGTGA+GGG | - | chr8_1:91842903-91842922 | Msa1226100:intron | 50.0% |
| AACTGAACCCTCACACTGAC+CGG | + | chr8_1:91842913-91842932 | None:intergenic | 50.0% | |
| GTGTGAGGGTTCAGTTGAAC+TGG | - | chr8_1:91842917-91842936 | Msa1226100:intron | 50.0% | |
| TGGACAACGACAACACTCGA+CGG | + | chr8_1:91843543-91843562 | None:intergenic | 50.0% | |
| TGGTGACCTGTGAGCTCATT+TGG | - | chr8_1:91843649-91843668 | Msa1226100:intron | 50.0% | |
| GCGGCATTGCATATTACCTC+TGG | - | chr8_1:91843740-91843759 | Msa1226100:intron | 50.0% | |
| GACGGACATGCATGTGCAAA+AGG | + | chr8_1:91844180-91844199 | None:intergenic | 50.0% | |
| ! | CGTACTCTGTGTCGGTACAA+AGG | + | chr8_1:91844368-91844387 | None:intergenic | 50.0% |
| TCAACAACTGCTGGTGTACG+TGG | - | chr8_1:91845407-91845426 | Msa1226100:CDS | 50.0% | |
| TTCAGCACTGCTAAGACTCG+AGG | - | chr8_1:91845439-91845458 | Msa1226100:CDS | 50.0% | |
| TGGAGTTGTGGGAACGAGAC+TGG | + | chr8_1:91842468-91842487 | None:intergenic | 55.0% | |
| ACCTCCGGCGGTTACAAATG+CGG | - | chr8_1:91842762-91842781 | Msa1226100:intron | 55.0% | |
| ACCGTATCTCACACCGGTCA+CGG | + | chr8_1:91842842-91842861 | None:intergenic | 55.0% | |
| ACTGAACCCTCACACTGACC+GGG | + | chr8_1:91842912-91842931 | None:intergenic | 55.0% | |
| ATCCCGCCACGAACAACCTC+CGG | - | chr8_1:91842747-91842766 | Msa1226100:intron | 60.0% | |
| TAACCGCCGGAGGTTGTTCG+TGG | + | chr8_1:91842756-91842775 | None:intergenic | 60.0% | |
| TATCTCACACCGGTCACGGC+GGG | + | chr8_1:91842838-91842857 | None:intergenic | 60.0% | |
| GTATCTCACACCGGTCACGG+CGG | + | chr8_1:91842839-91842858 | None:intergenic | 60.0% | |
| GCCGTGACCGGTGTGAGATA+CGG | - | chr8_1:91842838-91842857 | Msa1226100:three_prime_UTR | 60.0% | |
| GCGAAGAGATCGCCGGAGTT+GGG | + | chr8_1:91842873-91842892 | None:intergenic | 60.0% | |
| AGCGAAGAGATCGCCGGAGT+TGG | + | chr8_1:91842874-91842893 | None:intergenic | 60.0% | |
| ACACGCAGCGAAGAGATCGC+CGG | + | chr8_1:91842880-91842899 | None:intergenic | 60.0% | |
| GCCGCATTTGTAACCGCCGG+AGG | + | chr8_1:91842766-91842785 | None:intergenic | 65.0% | |
| CGCCGGAGGTTGTTCGTGGC+GGG | + | chr8_1:91842752-91842771 | None:intergenic | 70.0% | |
| CCGCCGGAGGTTGTTCGTGG+CGG | + | chr8_1:91842753-91842772 | None:intergenic | 70.0% | |
| CCGCCACGAACAACCTCCGG+CGG | - | chr8_1:91842750-91842769 | Msa1226100:intron | 70.0% | |
| GGACACAACGCGGAGACGGC+CGG | + | chr8_1:91842817-91842836 | None:intergenic | 70.0% | |
| GGCGGGACACAACGCGGAGA+CGG | + | chr8_1:91842821-91842840 | None:intergenic | 70.0% | |
| GGTCACGGCGGGACACAACG+CGG | + | chr8_1:91842827-91842846 | None:intergenic | 70.0% | |
| GCGTTGTGTCCCGCCGTGAC+CGG | - | chr8_1:91842826-91842845 | Msa1226100:three_prime_UTR | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_1 | gene | 91842421 | 91845682 | 91842421 | ID=Msa1226100;Name=Msa1226100 |
| chr8_1 | mRNA | 91842421 | 91845682 | 91842421 | ID=Msa1226100-mRNA-1;Parent=Msa1226100;Name=Msa1226100-mRNA-1;_AED=0.27;_eAED=0.27;_QI=155|0.75|1|1|0|0|5|885|51 |
| chr8_1 | exon | 91842421 | 91842701 | 91842421 | ID=Msa1226100-mRNA-1:exon:33493;Parent=Msa1226100-mRNA-1 |
| chr8_1 | exon | 91842823 | 91842900 | 91842823 | ID=Msa1226100-mRNA-1:exon:33492;Parent=Msa1226100-mRNA-1 |
| chr8_1 | exon | 91842994 | 91843060 | 91842994 | ID=Msa1226100-mRNA-1:exon:33491;Parent=Msa1226100-mRNA-1 |
| chr8_1 | exon | 91843824 | 91843872 | 91843824 | ID=Msa1226100-mRNA-1:exon:33490;Parent=Msa1226100-mRNA-1 |
| chr8_1 | exon | 91844962 | 91845682 | 91844962 | ID=Msa1226100-mRNA-1:exon:33489;Parent=Msa1226100-mRNA-1 |
| chr8_1 | five_prime_UTR | 91845528 | 91845682 | 91845528 | ID=Msa1226100-mRNA-1:five_prime_utr;Parent=Msa1226100-mRNA-1 |
| chr8_1 | CDS | 91845372 | 91845527 | 91845372 | ID=Msa1226100-mRNA-1:cds;Parent=Msa1226100-mRNA-1 |
| chr8_1 | three_prime_UTR | 91844962 | 91845371 | 91844962 | ID=Msa1226100-mRNA-1:three_prime_utr;Parent=Msa1226100-mRNA-1 |
| chr8_1 | three_prime_UTR | 91843824 | 91843872 | 91843824 | ID=Msa1226100-mRNA-1:three_prime_utr;Parent=Msa1226100-mRNA-1 |
| chr8_1 | three_prime_UTR | 91842994 | 91843060 | 91842994 | ID=Msa1226100-mRNA-1:three_prime_utr;Parent=Msa1226100-mRNA-1 |
| chr8_1 | three_prime_UTR | 91842823 | 91842900 | 91842823 | ID=Msa1226100-mRNA-1:three_prime_utr;Parent=Msa1226100-mRNA-1 |
| chr8_1 | three_prime_UTR | 91842421 | 91842701 | 91842421 | ID=Msa1226100-mRNA-1:three_prime_utr;Parent=Msa1226100-mRNA-1 |
| Gene Sequence |
| Protein sequence |
