AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0290030

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0290030 MtrunA17_Chr2g0309541 98.693 306 4 0 1 306 1 306 0.0 634
Msa0290030 MtrunA17_Chr2g0309521 87.419 310 30 4 1 306 1 305 0.0 554
Msa0290030 MtrunA17_Chr2g0318911 83.442 308 47 2 1 306 1 306 0.0 534
Msa0290030 MtrunA17_Chr2g0309511 82.581 310 45 4 1 306 1 305 0.0 523
Msa0290030 MtrunA17_Chr1g0199991 56.690 284 118 4 14 295 8 288 2.43e-116 343
Msa0290030 MtrunA17_Chr1g0199971 54.392 296 126 4 1 295 1 288 6.90e-113 335
Msa0290030 MtrunA17_Chr7g0219051 49.141 291 140 7 9 298 7 290 8.42e-97 294
Msa0290030 MtrunA17_Chr3g0118841 51.538 260 121 4 36 295 77 331 4.02e-92 283
Msa0290030 MtrunA17_Chr3g0118851 52.308 260 119 4 36 295 76 330 1.94e-91 281
Msa0290030 MtrunA17_Chr3g0118891 47.518 282 141 5 16 295 54 330 7.42e-91 278
Msa0290030 MtrunA17_Chr4g0068841 46.844 301 154 5 8 306 7 303 1.52e-90 278
Msa0290030 MtrunA17_Chr3g0118831 45.875 303 154 7 13 314 54 347 6.40e-90 276
Msa0290030 MtrunA17_Chr3g0090331 47.766 291 140 7 24 307 56 341 5.27e-88 272
Msa0290030 MtrunA17_Chr3g0118881 50.000 260 125 4 36 295 76 330 1.68e-86 268
Msa0290030 MtrunA17_Chr3g0118861 45.246 305 144 8 26 314 59 356 4.97e-85 264
Msa0290030 MtrunA17_Chr1g0153881 49.049 263 128 6 36 297 88 345 1.07e-83 261
Msa0290030 MtrunA17_Chr4g0020241 47.080 274 137 7 35 308 71 336 2.64e-83 260
Msa0290030 MtrunA17_Chr1g0153941 47.653 277 139 5 33 308 73 344 3.40e-83 260
Msa0290030 MtrunA17_Chr4g0038311 49.815 271 126 8 31 297 28 292 6.54e-83 258
Msa0290030 MtrunA17_Chr4g0068861 46.021 289 148 6 10 297 58 339 1.56e-81 255
Msa0290030 MtrunA17_Chr2g0281621 45.076 264 137 6 36 297 33 290 1.42e-73 234
Msa0290030 MtrunA17_Chr4g0047861 45.946 259 132 6 42 297 57 310 4.37e-73 233
Msa0290030 MtrunA17_Chr3g0126031 42.593 270 147 6 42 308 32 296 2.88e-72 231
Msa0290030 MtrunA17_Chr2g0304931 50.870 230 97 7 36 262 37 253 8.49e-70 224
Msa0290030 MtrunA17_Chr5g0431301 40.604 298 161 7 13 304 9 296 2.72e-69 223
Msa0290030 MtrunA17_Chr1g0153931 55.435 184 78 3 40 222 77 257 7.16e-69 216
Msa0290030 MtrunA17_Chr8g0385871 40.000 310 166 8 1 303 1 297 8.38e-69 222
Msa0290030 MtrunA17_Chr3g0094811 42.384 302 140 11 36 318 29 315 3.97e-68 219
Msa0290030 MtrunA17_Chr3g0126051 42.481 266 146 6 42 304 37 298 3.63e-67 218
Msa0290030 MtrunA17_Chr3g0131731 41.818 275 146 7 36 303 29 296 2.63e-66 215
Msa0290030 MtrunA17_Chr1g0165811 44.622 251 120 9 36 280 29 266 4.44e-66 209
Msa0290030 MtrunA17_Chr8g0338461 39.931 288 163 5 20 302 12 294 5.82e-63 207
Msa0290030 MtrunA17_Chr7g0221551 47.489 219 107 5 42 260 34 244 5.90e-62 204
Msa0290030 MtrunA17_Chr7g0234051 37.540 309 178 7 10 313 1 299 1.43e-57 193
Msa0290030 MtrunA17_Chr2g0281641 45.116 215 112 3 86 297 1 212 2.65e-57 190
Msa0290030 MtrunA17_Chr7g0249431 38.462 299 161 10 10 295 4 292 6.31e-55 186
Msa0290030 MtrunA17_Chr7g0234041 39.777 269 137 7 42 305 30 278 2.50e-51 176
Msa0290030 MtrunA17_Chr1g0171411 40.196 204 116 5 51 254 81 278 1.19e-37 140
Msa0290030 MtrunA17_Chr2g0327381 34.322 236 141 7 24 257 71 294 2.77e-36 137
Msa0290030 MtrunA17_Chr2g0285351 29.730 333 198 13 3 320 5 316 2.85e-36 135
Msa0290030 MtrunA17_Chr4g0028271 33.600 250 147 6 53 289 97 340 5.32e-36 135
Msa0290030 MtrunA17_Chr2g0285371 30.996 271 174 6 38 301 33 297 5.47e-36 135
Msa0290030 MtrunA17_Chr4g0028241 37.436 195 116 5 53 247 89 277 2.58e-35 134
Msa0290030 MtrunA17_Chr2g0285381 30.847 295 170 11 38 313 36 315 3.83e-35 132
Msa0290030 MtrunA17_Chr2g0327401 35.455 220 131 7 53 270 100 310 2.34e-34 131
Msa0290030 MtrunA17_Chr4g0028261 35.160 219 134 6 53 271 118 328 2.77e-34 131
Msa0290030 MtrunA17_Chr4g0009681 31.159 276 169 10 42 307 40 304 9.52e-34 129
Msa0290030 MtrunA17_Chr1g0204191 33.221 298 148 10 36 318 90 351 2.33e-33 128
Msa0290030 MtrunA17_Chr3g0133011 30.640 297 162 8 8 290 24 290 3.30e-33 128
Msa0290030 MtrunA17_Chr4g0009661 31.022 274 172 9 42 307 43 307 4.80e-33 127
Msa0290030 MtrunA17_Chr1g0199171 39.326 178 101 5 51 228 88 258 5.96e-33 127
Msa0290030 MtrunA17_Chr4g0009711 29.373 303 194 11 14 308 18 308 7.32e-33 126
Msa0290030 MtrunA17_Chr2g0327371 34.101 217 120 8 62 274 90 287 6.01e-32 124
Msa0290030 MtrunA17_Chr4g0028281 31.395 258 157 7 53 297 95 345 6.66e-32 124
Msa0290030 MtrunA17_Chr4g0009701 29.818 275 176 8 42 308 43 308 6.73e-32 124
Msa0290030 MtrunA17_Chr4g0009651 30.545 275 174 11 42 308 43 308 1.51e-31 123
Msa0290030 MtrunA17_Chr4g0009671 29.921 254 163 7 49 294 15 261 6.08e-31 120
Msa0290030 MtrunA17_Chr3g0093971 29.278 263 175 5 38 294 26 283 1.42e-29 117
Msa0290030 MtrunA17_Chr4g0009641 28.859 298 178 11 14 308 18 284 7.40e-28 112
Msa0290030 MtrunA17_Chr5g0447441 33.333 177 110 6 55 228 43 214 6.20e-26 107
Msa0290030 MtrunA17_Chr4g0044051 34.637 179 105 7 55 228 47 218 7.36e-25 104
Msa0290030 MtrunA17_Chr2g0279371 34.932 146 85 4 67 207 41 181 7.08e-20 85.9
Msa0290030 MtrunA17_Chr7g0229631 47.312 93 43 5 35 127 31 117 1.57e-19 83.6
Msa0290030 MtrunA17_Chr4g0009721 26.909 275 137 11 42 308 39 257 2.02e-18 85.5
Msa0290030 MtrunA17_Chr7g0229611 43.421 76 40 3 40 115 27 99 3.93e-15 70.1
Msa0290030 MtrunA17_Chr4g0027731 29.412 153 95 5 56 205 36 178 7.90e-15 75.1
Msa0290030 MtrunA17_Chr7g0229621 43.210 81 42 4 35 115 23 99 4.70e-14 67.4
Msa0290030 MtrunA17_Chr2g0320571 33.333 153 89 5 56 205 36 178 4.17e-12 66.6
Msa0290030 MtrunA17_Chr2g0281631 58.824 51 19 2 42 92 49 97 6.52e-12 62.0
Msa0290030 MtrunA17_Chr7g0229641 47.917 48 25 0 172 219 45 92 1.02e-11 60.5
Msa0290030 MtrunA17_Chr2g0295271 80.000 30 6 0 193 222 19 48 9.99e-11 56.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0290030 AT4G30810.1 60.667 300 114 3 1 300 1 296 1.18e-134 391
Msa0290030 AT2G35780.1 58.712 264 101 4 32 294 24 280 1.04e-113 337
Msa0290030 AT3G07990.1 55.282 284 120 5 23 304 18 296 4.03e-111 330
Msa0290030 AT4G30610.1 48.693 306 145 7 9 313 7 301 6.58e-100 302
Msa0290030 AT2G35770.1 48.649 296 143 5 10 303 13 301 1.08e-97 296
Msa0290030 AT2G24000.1 51.825 274 127 4 32 305 25 293 1.65e-96 293
Msa0290030 AT3G02110.1 46.959 296 149 7 1 295 1 289 8.51e-94 286
Msa0290030 AT2G24010.1 51.852 270 123 6 32 300 25 288 4.82e-91 279
Msa0290030 AT2G24010.4 49.097 277 120 6 40 300 3 274 3.20e-86 263
Msa0290030 AT2G24010.2 48.772 285 124 7 32 300 25 303 8.71e-86 266
Msa0290030 AT5G23210.3 50.936 267 123 7 30 294 44 304 1.96e-85 265
Msa0290030 AT5G23210.1 50.936 267 123 7 30 294 44 304 1.27e-84 264
Msa0290030 AT3G17180.2 48.134 268 134 4 33 299 34 297 4.41e-83 258
Msa0290030 AT3G17180.1 48.134 268 134 4 33 299 34 297 1.68e-82 258
Msa0290030 AT2G24010.3 45.033 302 120 7 40 300 3 299 1.28e-79 250
Msa0290030 AT1G61130.1 44.912 285 147 6 13 294 9 286 2.66e-78 246
Msa0290030 AT3G63470.1 44.944 267 135 6 32 294 73 331 6.00e-78 247
Msa0290030 AT5G08260.1 39.498 319 180 8 10 319 6 320 1.64e-76 242
Msa0290030 AT1G11080.1 42.140 299 157 7 7 294 14 307 2.02e-75 240
Msa0290030 AT1G11080.2 42.140 299 157 7 7 294 14 307 2.25e-75 240
Msa0290030 AT4G15100.1 40.956 293 166 5 8 297 14 302 4.73e-74 236
Msa0290030 AT2G12480.1 39.159 309 176 7 7 312 4 303 1.17e-72 231
Msa0290030 AT2G12480.2 39.159 309 176 7 7 312 4 303 1.27e-72 231
Msa0290030 AT2G12480.4 39.933 298 170 6 7 304 4 292 1.51e-72 231
Msa0290030 AT2G12480.3 39.933 298 170 6 7 304 4 292 2.09e-72 231
Msa0290030 AT3G52020.1 43.726 263 140 6 32 294 73 327 2.68e-72 232
Msa0290030 AT5G42240.1 43.116 276 145 6 35 304 30 299 1.88e-70 226
Msa0290030 AT1G43780.1 39.683 315 169 10 1 304 1 305 2.48e-70 226
Msa0290030 AT2G05850.1 41.971 274 149 6 24 294 49 315 4.06e-70 226
Msa0290030 AT5G42230.1 38.206 301 172 8 12 304 1 295 2.74e-69 223
Msa0290030 AT5G42230.2 38.206 301 172 8 12 304 1 295 2.74e-69 223
Msa0290030 AT3G52010.1 42.379 269 144 8 40 305 66 326 1.36e-68 222
Msa0290030 AT2G33530.1 46.241 266 127 9 36 294 32 288 2.06e-68 221
Msa0290030 AT3G52000.1 42.336 274 144 9 24 294 48 310 8.38e-68 220
Msa0290030 AT1G28110.1 42.857 266 136 8 36 294 30 286 2.07e-66 216
Msa0290030 AT1G28110.2 42.857 266 136 8 36 294 30 286 2.07e-66 216
Msa0290030 AT5G23210.5 51.691 207 95 4 90 294 6 209 1.22e-63 207
Msa0290030 AT5G23210.4 51.471 204 94 4 93 294 8 208 3.27e-63 204
Msa0290030 AT5G23210.2 51.471 204 94 4 93 294 8 208 1.32e-62 204
Msa0290030 AT4G12910.2 39.731 297 163 7 6 297 8 293 2.88e-62 205
Msa0290030 AT4G12910.1 39.731 297 163 7 6 297 8 293 5.96e-62 205
Msa0290030 AT3G56540.1 54.545 165 70 4 32 196 73 232 1.74e-60 194
Msa0290030 AT3G25420.1 40.076 262 145 5 42 296 33 289 6.60e-59 197
Msa0290030 AT2G24000.2 34.672 274 111 6 32 305 25 230 6.00e-44 155
Msa0290030 AT2G22990.4 34.520 281 166 8 38 310 22 292 2.08e-42 152
Msa0290030 AT2G23000.1 35.985 264 156 6 38 294 24 281 2.65e-42 152
Msa0290030 AT2G23000.2 35.985 264 156 6 38 294 24 281 2.65e-42 152
Msa0290030 AT2G22990.3 34.520 281 166 8 38 310 22 292 3.34e-42 152
Msa0290030 AT2G22990.1 34.520 281 166 8 38 310 22 292 3.55e-42 151
Msa0290030 AT2G22970.2 35.055 271 157 8 34 294 20 281 4.48e-42 148
Msa0290030 AT2G22970.4 35.055 271 157 8 34 294 20 281 2.49e-41 149
Msa0290030 AT2G22970.3 35.055 271 157 8 34 294 20 281 3.13e-41 149
Msa0290030 AT2G22970.1 35.055 271 157 8 34 294 20 281 5.43e-41 148
Msa0290030 AT2G22920.4 34.470 264 161 5 38 294 24 282 5.80e-41 145
Msa0290030 AT1G73280.2 33.835 266 164 5 38 296 32 292 6.96e-41 147
Msa0290030 AT2G22920.1 34.470 264 161 5 38 294 24 282 2.56e-40 146
Msa0290030 AT2G22980.2 34.717 265 154 7 38 294 25 278 3.20e-40 145
Msa0290030 AT1G73280.1 32.323 297 187 6 7 296 3 292 4.45e-40 146
Msa0290030 AT2G22980.4 34.717 265 154 7 38 294 25 278 5.03e-40 145
Msa0290030 AT2G22980.1 34.717 265 154 7 38 294 25 278 5.70e-40 145
Msa0290030 AT2G22920.2 34.470 264 161 5 38 294 24 282 6.02e-40 145
Msa0290030 AT3G10450.4 32.576 264 166 5 38 294 28 286 9.99e-40 144
Msa0290030 AT1G73290.2 31.734 271 173 5 31 294 22 287 1.14e-39 142
Msa0290030 AT3G10450.1 32.576 264 166 5 38 294 28 286 1.86e-39 144
Msa0290030 AT2G22980.3 34.831 267 153 8 38 294 25 280 2.75e-39 142
Msa0290030 AT1G73290.3 31.734 271 173 5 31 294 22 287 7.05e-39 142
Msa0290030 AT3G12240.1 34.586 266 160 6 38 295 27 286 1.37e-38 142
Msa0290030 AT1G73290.1 31.734 271 173 5 31 294 22 287 1.88e-38 141
Msa0290030 AT1G73270.1 31.541 279 178 6 40 310 34 307 5.29e-38 140
Msa0290030 AT1G73270.2 31.541 279 178 6 40 310 34 307 5.31e-38 140
Msa0290030 AT3G12230.1 32.210 267 169 5 38 297 26 287 9.22e-38 139
Msa0290030 AT2G23010.2 32.847 274 167 7 38 302 24 289 9.52e-38 139
Msa0290030 AT2G23010.1 32.847 274 167 7 38 302 24 289 1.18e-37 139
Msa0290030 AT5G22980.1 41.573 178 97 5 51 228 96 266 2.27e-37 140
Msa0290030 AT1G73300.1 32.331 266 168 5 38 296 32 292 3.51e-37 138
Msa0290030 AT1G73300.2 32.331 266 168 5 38 296 32 292 3.51e-37 138
Msa0290030 AT3G12203.3 33.588 262 162 5 40 294 10 266 3.80e-37 137
Msa0290030 AT3G12203.1 33.588 262 162 5 40 294 31 287 5.51e-37 137
Msa0290030 AT5G36180.1 32.331 266 168 5 38 296 32 292 8.66e-37 137
Msa0290030 AT3G10410.1 40.909 176 97 4 53 228 99 267 9.62e-37 138
Msa0290030 AT3G12220.1 32.576 264 166 5 38 294 26 284 1.21e-36 137
Msa0290030 AT1G73310.2 32.234 273 166 7 38 296 32 299 1.48e-36 136
Msa0290030 AT1G33540.1 33.077 260 162 5 42 294 32 286 2.08e-36 136
Msa0290030 AT1G73310.1 30.392 306 179 9 38 314 32 332 2.20e-36 136
Msa0290030 AT3G10450.3 32.245 245 154 5 57 294 4 243 7.19e-36 133
Msa0290030 AT3G12220.3 33.333 252 154 6 38 283 26 269 7.24e-36 134
Msa0290030 AT2G22990.5 33.096 281 161 9 38 310 22 283 1.35e-35 134
Msa0290030 AT3G10450.2 32.245 245 154 5 57 294 4 243 1.43e-35 133
Msa0290030 AT5G09640.1 30.303 297 185 7 10 297 4 287 2.71e-35 133
Msa0290030 AT1G33540.2 33.061 245 152 5 57 294 4 243 1.81e-34 130
Msa0290030 AT3G12220.2 32.245 245 154 5 57 294 15 254 1.66e-33 127
Msa0290030 AT3G45010.1 37.079 178 105 4 51 228 99 269 2.53e-33 129
Msa0290030 AT1G15000.1 38.764 178 96 6 55 228 37 205 6.84e-32 124
Msa0290030 AT3G12203.2 32.906 234 145 5 68 294 1 229 7.36e-32 122
Msa0290030 AT2G22990.2 32.796 186 114 5 128 310 1 178 3.05e-22 95.5
Msa0290030 AT2G22990.6 32.796 186 114 5 128 310 1 178 3.05e-22 95.5
Msa0290030 AT1G73280.4 30.114 176 118 2 123 296 18 190 1.30e-21 94.0
Msa0290030 AT5G22960.1 31.928 166 88 5 53 218 34 174 7.29e-21 89.0
Msa0290030 AT2G22980.5 32.353 170 103 4 128 294 1 161 2.18e-20 89.7
Msa0290030 AT1G73310.3 28.962 183 118 4 123 296 18 197 5.62e-19 86.7
Msa0290030 AT5G36180.2 28.977 176 120 2 123 296 18 190 7.26e-19 86.3
Msa0290030 AT5G36180.4 28.977 176 120 2 123 296 18 190 7.42e-19 86.3
Msa0290030 AT5G36180.5 28.977 176 120 2 123 296 18 190 8.02e-19 86.3
Msa0290030 AT5G36180.3 28.977 176 120 2 123 296 18 190 8.02e-19 86.3
Msa0290030 AT1G73280.3 29.762 168 113 2 131 296 1 165 1.31e-18 85.1
Msa0290030 AT2G27920.1 27.746 173 113 6 56 225 37 200 2.33e-15 77.0

Find 73 sgRNAs with CRISPR-Local

Find 306 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGTTGTTCTTCTATTGCTTA+TGG 0.228301 2_3:-36633554 Msa0290030:CDS
TCACCTTGATTCCAAGAATA+AGG 0.255102 2_3:+36633470 None:intergenic
TTGAAGGCTTGTCCGGCGTC+TGG 0.272640 2_3:+36631773 None:intergenic
TATAAATTTCAAAGGTTTCA+TGG 0.284809 2_3:-36632288 Msa0290030:intron
AACTATAGTATATGAATATA+AGG 0.312930 2_3:+36633935 None:intergenic
TCCTGTCCTTGTTGGACAAA+TGG 0.319796 2_3:+36633749 None:intergenic
CAATCTTGTCCTGTCCTTGT+TGG 0.353304 2_3:+36633741 None:intergenic
GTGGACAAATGGTATGATTT+CGG 0.356676 2_3:-36632076 Msa0290030:CDS
ATCAGCTTTGAACACTATTC+TGG 0.360643 2_3:-36633689 Msa0290030:CDS
GGAAATTGCTGATAAAGAAA+TGG 0.365053 2_3:-36631974 Msa0290030:CDS
TTGCAATGTTACATTGGAAA+AGG 0.372020 2_3:+36633777 None:intergenic
AAGAATAAGGATTAAAATGA+AGG 0.376238 2_3:+36633483 None:intergenic
AATCCTTATTCTTGGAATCA+AGG 0.389072 2_3:-36633473 Msa0290030:intron
TGAGTCAATATAAAGAATAT+TGG 0.390141 2_3:+36633370 None:intergenic
TATTTGAGACCACTTAGAAT+TGG 0.412853 2_3:+36633829 None:intergenic
CCATTGGTTGAAGGCTTGTC+CGG 0.416917 2_3:+36631766 None:intergenic
TATGGTGAAGCTGAGGAAAT+TGG 0.416971 2_3:-36633536 Msa0290030:CDS
CGAAAATCCCCAACTGATCA+TGG 0.422919 2_3:+36632106 None:intergenic
TTATGGTTTAATGGTGGTCC+TGG 0.423998 2_3:-36633575 Msa0290030:CDS
CCATCTGAATTAATATGAAA+AGG 0.429688 2_3:+36633512 None:intergenic
ACAGTCATGTGAAAGGATCT+TGG 0.433247 2_3:-36631995 Msa0290030:CDS
TTCGAGTTTATGTGGACAAA+TGG 0.440512 2_3:-36632087 Msa0290030:CDS
TATGAAAATCCAACTCCAAC+AGG 0.447951 2_3:+36633347 None:intergenic
GACGATTTCCATGATCAGTT+GGG 0.450265 2_3:-36632114 Msa0290030:CDS
TTCTCAACAACGGCGATAAG+AGG 0.454675 2_3:-36633298 Msa0290030:CDS
GAAATTGCTGATAAAGAAAT+GGG 0.456645 2_3:-36631973 Msa0290030:CDS
TGAAGGCTTGTCCGGCGTCT+GGG 0.456975 2_3:+36631774 None:intergenic
GGCCATTTCAGATGGTAGAT+AGG 0.463695 2_3:+36633850 None:intergenic
GGAGGAGTGAAGATACTGTA+TGG 0.468358 2_3:+36631940 None:intergenic
CATGATTCTATAAATTTCAA+AGG 0.471796 2_3:-36632296 Msa0290030:CDS
TACCTATCTACCATCTGAAA+TGG 0.476008 2_3:-36633852 Msa0290030:exon
ATCTCATATTTCTATTGAAG+TGG 0.479798 2_3:-36632518 Msa0290030:CDS
ATTGACTCACCTGTTGGAGT+TGG 0.487702 2_3:-36633356 Msa0290030:CDS
ATAATTATTGATGTTTGTGT+AGG 0.487851 2_3:+36631852 None:intergenic
ATCAGCGGTGAGAGCTATGC+AGG 0.488144 2_3:-36632456 Msa0290030:intron
CTTTATATTGACTCACCTGT+TGG 0.499451 2_3:-36633362 Msa0290030:CDS
GTTCATTGTCATCATAACAT+TGG 0.506268 2_3:-36633804 Msa0290030:CDS
AAAAGAAGTGGCTTAGAAGT+AGG 0.507326 2_3:+36633596 None:intergenic
AGTTGTACTTGACAATAACT+TGG 0.508533 2_3:+36632330 None:intergenic
CTATGTAGCACCGACACCAT+TGG 0.508790 2_3:+36631750 None:intergenic
ACCATTTGTCCAACAAGGAC+AGG 0.509689 2_3:-36633750 Msa0290030:CDS
AGACGATTTCCATGATCAGT+TGG 0.510824 2_3:-36632115 Msa0290030:CDS
CAACAAGGACAGGACAAGAT+TGG 0.511283 2_3:-36633740 Msa0290030:CDS
GCACCGACACCATTGGTTGA+AGG 0.521025 2_3:+36631757 None:intergenic
TGCAATGTTACATTGGAAAA+GGG 0.529664 2_3:+36633778 None:intergenic
GTTCTGTTGCAATGTTACAT+TGG 0.557162 2_3:+36633771 None:intergenic
CCATGCTAATGATAATCAGC+AGG 0.558448 2_3:-36631914 Msa0290030:CDS
TCCTTTCACATGACTGTGAA+GGG 0.558906 2_3:+36632001 None:intergenic
TGGTTATATAACAGTGAATG+AGG 0.560384 2_3:-36633669 Msa0290030:CDS
CCGGACAAGCCTTCAACCAA+TGG 0.564973 2_3:-36631766 Msa0290030:three_prime_UTR
ATAACAGTGAATGAGGATGT+TGG 0.577186 2_3:-36633662 Msa0290030:CDS
ACAATAACTTGGCTAAGTTG+AGG 0.581298 2_3:+36632341 None:intergenic
ACGATTTCCATGATCAGTTG+GGG 0.582348 2_3:-36632113 Msa0290030:CDS
CACTGACACGTCCCAGACGC+CGG 0.582929 2_3:-36631785 Msa0290030:three_prime_UTR
TTAGAATTGGCCATTTCAGA+TGG 0.585132 2_3:+36633842 None:intergenic
ATCCTTTCACATGACTGTGA+AGG 0.585308 2_3:+36632000 None:intergenic
CCTGCTGATTATCATTAGCA+TGG 0.591913 2_3:+36631914 None:intergenic
CTGAAATGGCCAATTCTAAG+TGG 0.595959 2_3:-36633838 Msa0290030:exon
CCATTAAACCATAAAAGAAG+TGG 0.598305 2_3:+36633584 None:intergenic
CAGTGAATGAGGATGTTGGT+AGG 0.604941 2_3:-36633658 Msa0290030:CDS
GAGGAGTGAAGATACTGTAT+GGG 0.606990 2_3:+36631941 None:intergenic
AACAACGGCGATAAGAGGAC+AGG 0.614127 2_3:-36633293 Msa0290030:intron
ACCCTTCACAGTCATGTGAA+AGG 0.618643 2_3:-36632002 Msa0290030:CDS
TATTGCTTATGGTGAAGCTG+AGG 0.624002 2_3:-36633543 Msa0290030:CDS
TGATTATCATTAGCATGGCA+AGG 0.625509 2_3:+36631919 None:intergenic
TACAGTACCACTCAATTCTG+TGG 0.628210 2_3:+36633873 None:intergenic
AAGCCTTCAACCAATGGTGT+CGG 0.634268 2_3:-36631760 Msa0290030:three_prime_UTR
AAGATTGGTAGAGCACTCCC+AGG 0.638784 2_3:-36633725 Msa0290030:CDS
ACAGAACCATTTGTCCAACA+AGG 0.681679 2_3:-36633755 Msa0290030:CDS
TCTGATGACATTCTCAACAA+CGG 0.685910 2_3:-36633308 Msa0290030:CDS
ATAAATGCCACAGAATTGAG+TGG 0.690758 2_3:-36633880 Msa0290030:five_prime_UTR
TAAGCAATAGAAGAACAACC+AGG 0.719081 2_3:+36633557 None:intergenic
TTATCATTAGCATGGCAAGG+AGG 0.764262 2_3:+36631922 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AACTATAGTATATGAATATA+AGG + chr2_3:36631762-36631781 None:intergenic 15.0%
!!! TGATTTTATTTTTTTTACCA+GGG + chr2_3:36632543-36632562 None:intergenic 15.0%
!! ATTTAAAGATGATCTAATAA+AGG + chr2_3:36632720-36632739 None:intergenic 15.0%
!! AACTATAGTATATGAATATA+AGG + chr2_3:36631762-36631781 None:intergenic 15.0%
!!! TGATTTTATTTTTTTTACCA+GGG + chr2_3:36632543-36632562 None:intergenic 15.0%
!! ATTTAAAGATGATCTAATAA+AGG + chr2_3:36632720-36632739 None:intergenic 15.0%
!! AAGAATAAGGATTAAAATGA+AGG + chr2_3:36632214-36632233 None:intergenic 20.0%
!!! TTCATTTTAATCCTTATTCT+TGG - chr2_3:36632213-36632232 Msa0290030:intron 20.0%
!! TGAGTCAATATAAAGAATAT+TGG + chr2_3:36632327-36632346 None:intergenic 20.0%
!!! CTGATTTTATTTTTTTTACC+AGG + chr2_3:36632544-36632563 None:intergenic 20.0%
!! CATGATTCTATAAATTTCAA+AGG - chr2_3:36633398-36633417 Msa0290030:intron 20.0%
!! TATAAATTTCAAAGGTTTCA+TGG - chr2_3:36633406-36633425 Msa0290030:intron 20.0%
!! ATAATTATTGATGTTTGTGT+AGG + chr2_3:36633845-36633864 None:intergenic 20.0%
!! AAGAATAAGGATTAAAATGA+AGG + chr2_3:36632214-36632233 None:intergenic 20.0%
!!! TTCATTTTAATCCTTATTCT+TGG - chr2_3:36632213-36632232 Msa0290030:intron 20.0%
!! TGAGTCAATATAAAGAATAT+TGG + chr2_3:36632327-36632346 None:intergenic 20.0%
!!! CTGATTTTATTTTTTTTACC+AGG + chr2_3:36632544-36632563 None:intergenic 20.0%
!! CATGATTCTATAAATTTCAA+AGG - chr2_3:36633398-36633417 Msa0290030:intron 20.0%
!! TATAAATTTCAAAGGTTTCA+TGG - chr2_3:36633406-36633425 Msa0290030:intron 20.0%
!! ATAATTATTGATGTTTGTGT+AGG + chr2_3:36633845-36633864 None:intergenic 20.0%
! CCATCTGAATTAATATGAAA+AGG + chr2_3:36632185-36632204 None:intergenic 25.0%
!! CCTTTTCATATTAATTCAGA+TGG - chr2_3:36632182-36632201 Msa0290030:intron 25.0%
!!! TTATTTTTTTTACCAGGGAT+GGG + chr2_3:36632538-36632557 None:intergenic 25.0%
!!! TTTATTTTTTTTACCAGGGA+TGG + chr2_3:36632539-36632558 None:intergenic 25.0%
!!! TAATCTATACCTTTGATTTG+TGG - chr2_3:36632739-36632758 Msa0290030:intron 25.0%
! AAGTTAAACTTATGAGACAA+AGG - chr2_3:36632813-36632832 Msa0290030:intron 25.0%
!! ATCTCATATTTCTATTGAAG+TGG - chr2_3:36633176-36633195 Msa0290030:intron 25.0%
!!! AAGTCTGTTTTTTTGTATTG+TGG + chr2_3:36633214-36633233 None:intergenic 25.0%
!!! GTGTTTTAGTTCTCTAATTT+TGG - chr2_3:36633304-36633323 Msa0290030:CDS 25.0%
! ACATTCTTACAATATTGCAT+GGG + chr2_3:36633478-36633497 None:intergenic 25.0%
! GAAATTGCTGATAAAGAAAT+GGG - chr2_3:36633721-36633740 Msa0290030:CDS 25.0%
! CCATCTGAATTAATATGAAA+AGG + chr2_3:36632185-36632204 None:intergenic 25.0%
!! CCTTTTCATATTAATTCAGA+TGG - chr2_3:36632182-36632201 Msa0290030:intron 25.0%
!!! TTATTTTTTTTACCAGGGAT+GGG + chr2_3:36632538-36632557 None:intergenic 25.0%
!!! TTTATTTTTTTTACCAGGGA+TGG + chr2_3:36632539-36632558 None:intergenic 25.0%
!!! TAATCTATACCTTTGATTTG+TGG - chr2_3:36632739-36632758 Msa0290030:intron 25.0%
! AAGTTAAACTTATGAGACAA+AGG - chr2_3:36632813-36632832 Msa0290030:intron 25.0%
!! ATCTCATATTTCTATTGAAG+TGG - chr2_3:36633176-36633195 Msa0290030:intron 25.0%
!!! AAGTCTGTTTTTTTGTATTG+TGG + chr2_3:36633214-36633233 None:intergenic 25.0%
!!! GTGTTTTAGTTCTCTAATTT+TGG - chr2_3:36633304-36633323 Msa0290030:CDS 25.0%
! ACATTCTTACAATATTGCAT+GGG + chr2_3:36633478-36633497 None:intergenic 25.0%
! GAAATTGCTGATAAAGAAAT+GGG - chr2_3:36633721-36633740 Msa0290030:CDS 25.0%
! TATTTGAGACCACTTAGAAT+TGG + chr2_3:36631868-36631887 None:intergenic 30.0%
GTTCATTGTCATCATAACAT+TGG - chr2_3:36631890-36631909 Msa0290030:CDS 30.0%
TGCAATGTTACATTGGAAAA+GGG + chr2_3:36631919-36631938 None:intergenic 30.0%
TTGCAATGTTACATTGGAAA+AGG + chr2_3:36631920-36631939 None:intergenic 30.0%
TGGTTATATAACAGTGAATG+AGG - chr2_3:36632025-36632044 Msa0290030:CDS 30.0%
!!! TTGGTAGGAATTTGTTTTAC+TGG - chr2_3:36632051-36632070 Msa0290030:CDS 30.0%
CCATTAAACCATAAAAGAAG+TGG + chr2_3:36632113-36632132 None:intergenic 30.0%
! CCACTTCTTTTATGGTTTAA+TGG - chr2_3:36632110-36632129 Msa0290030:CDS 30.0%
! CTTCTTTTATGGTTTAATGG+TGG - chr2_3:36632113-36632132 Msa0290030:CDS 30.0%
AATCCTTATTCTTGGAATCA+AGG - chr2_3:36632221-36632240 Msa0290030:intron 30.0%
! TGTGACACCTTATTTAATCT+TGG + chr2_3:36632773-36632792 None:intergenic 30.0%
! TAAATAAGGTGTCACACATT+TGG - chr2_3:36632777-36632796 Msa0290030:intron 30.0%
!! ATGTTTGGTTTCATTTTCGA+TGG + chr2_3:36633028-36633047 None:intergenic 30.0%
!!! AAAACAGACTTTTTCATCAG+CGG - chr2_3:36633223-36633242 Msa0290030:intron 30.0%
!!! ATTTTGGTTTTCCTTGTTTC+AGG - chr2_3:36633320-36633339 Msa0290030:CDS 30.0%
AGTTGTACTTGACAATAACT+TGG + chr2_3:36633367-36633386 None:intergenic 30.0%
ATATTGCATGGGATTATTAC+TGG + chr2_3:36633467-36633486 None:intergenic 30.0%
CACATTCTTACAATATTGCA+TGG + chr2_3:36633479-36633498 None:intergenic 30.0%
CATGCAATATTGTAAGAATG+TGG - chr2_3:36633477-36633496 Msa0290030:CDS 30.0%
GGAAATTGCTGATAAAGAAA+TGG - chr2_3:36633720-36633739 Msa0290030:CDS 30.0%
! TATTTGAGACCACTTAGAAT+TGG + chr2_3:36631868-36631887 None:intergenic 30.0%
GTTCATTGTCATCATAACAT+TGG - chr2_3:36631890-36631909 Msa0290030:CDS 30.0%
TGCAATGTTACATTGGAAAA+GGG + chr2_3:36631919-36631938 None:intergenic 30.0%
TTGCAATGTTACATTGGAAA+AGG + chr2_3:36631920-36631939 None:intergenic 30.0%
TGGTTATATAACAGTGAATG+AGG - chr2_3:36632025-36632044 Msa0290030:CDS 30.0%
!!! TTGGTAGGAATTTGTTTTAC+TGG - chr2_3:36632051-36632070 Msa0290030:CDS 30.0%
CCATTAAACCATAAAAGAAG+TGG + chr2_3:36632113-36632132 None:intergenic 30.0%
! CCACTTCTTTTATGGTTTAA+TGG - chr2_3:36632110-36632129 Msa0290030:CDS 30.0%
! CTTCTTTTATGGTTTAATGG+TGG - chr2_3:36632113-36632132 Msa0290030:CDS 30.0%
AATCCTTATTCTTGGAATCA+AGG - chr2_3:36632221-36632240 Msa0290030:intron 30.0%
! TGTGACACCTTATTTAATCT+TGG + chr2_3:36632773-36632792 None:intergenic 30.0%
! TAAATAAGGTGTCACACATT+TGG - chr2_3:36632777-36632796 Msa0290030:intron 30.0%
!! ATGTTTGGTTTCATTTTCGA+TGG + chr2_3:36633028-36633047 None:intergenic 30.0%
!!! AAAACAGACTTTTTCATCAG+CGG - chr2_3:36633223-36633242 Msa0290030:intron 30.0%
!!! ATTTTGGTTTTCCTTGTTTC+AGG - chr2_3:36633320-36633339 Msa0290030:CDS 30.0%
AGTTGTACTTGACAATAACT+TGG + chr2_3:36633367-36633386 None:intergenic 30.0%
ATATTGCATGGGATTATTAC+TGG + chr2_3:36633467-36633486 None:intergenic 30.0%
CACATTCTTACAATATTGCA+TGG + chr2_3:36633479-36633498 None:intergenic 30.0%
CATGCAATATTGTAAGAATG+TGG - chr2_3:36633477-36633496 Msa0290030:CDS 30.0%
GGAAATTGCTGATAAAGAAA+TGG - chr2_3:36633720-36633739 Msa0290030:CDS 30.0%
ATAAATGCCACAGAATTGAG+TGG - chr2_3:36631814-36631833 Msa0290030:three_prime_UTR 35.0%
TACCTATCTACCATCTGAAA+TGG - chr2_3:36631842-36631861 Msa0290030:CDS 35.0%
TTAGAATTGGCCATTTCAGA+TGG + chr2_3:36631855-36631874 None:intergenic 35.0%
GTTCTGTTGCAATGTTACAT+TGG + chr2_3:36631926-36631945 None:intergenic 35.0%
!! TGATGTTGAAGTTTTGACCT+GGG + chr2_3:36631989-36632008 None:intergenic 35.0%
!! ATCAGCTTTGAACACTATTC+TGG - chr2_3:36632005-36632024 Msa0290030:CDS 35.0%
ATAACAGTGAATGAGGATGT+TGG - chr2_3:36632032-36632051 Msa0290030:CDS 35.0%
AAAAGAAGTGGCTTAGAAGT+AGG + chr2_3:36632101-36632120 None:intergenic 35.0%
! CTTCTAAGCCACTTCTTTTA+TGG - chr2_3:36632102-36632121 Msa0290030:CDS 35.0%
TAAGCAATAGAAGAACAACC+AGG + chr2_3:36632140-36632159 None:intergenic 35.0%
GGTTGTTCTTCTATTGCTTA+TGG - chr2_3:36632140-36632159 Msa0290030:intron 35.0%
TCACCTTGATTCCAAGAATA+AGG + chr2_3:36632227-36632246 None:intergenic 35.0%
!! CTTTATATTGACTCACCTGT+TGG - chr2_3:36632332-36632351 Msa0290030:CDS 35.0%
TATGAAAATCCAACTCCAAC+AGG + chr2_3:36632350-36632369 None:intergenic 35.0%
TCTGATGACATTCTCAACAA+CGG - chr2_3:36632386-36632405 Msa0290030:intron 35.0%
TGATCATACCAACTTTGTGT+TGG - chr2_3:36632496-36632515 Msa0290030:CDS 35.0%
GATCATACCAACTTTGTGTT+GGG - chr2_3:36632497-36632516 Msa0290030:CDS 35.0%
CTAAATGTATCCTATGGCTT+GGG + chr2_3:36632610-36632629 None:intergenic 35.0%
TCAAAGATCCTAATTACGGT+GGG - chr2_3:36632643-36632662 Msa0290030:intron 35.0%
CAGACGACCAAGATTAAATA+AGG - chr2_3:36632763-36632782 Msa0290030:intron 35.0%
TTGGCTGATGCTCATTATAT+TGG - chr2_3:36632881-36632900 Msa0290030:intron 35.0%
!! GCTCATTATATTGGTGCTTT+TGG - chr2_3:36632890-36632909 Msa0290030:intron 35.0%
AAACCAAACATACGCATCTA+TGG - chr2_3:36633037-36633056 Msa0290030:intron 35.0%
AACCAAACATACGCATCTAT+GGG - chr2_3:36633038-36633057 Msa0290030:intron 35.0%
CCAAAACAACTAGTCCATTA+GGG + chr2_3:36633068-36633087 None:intergenic 35.0%
TCCAAAACAACTAGTCCATT+AGG + chr2_3:36633069-36633088 None:intergenic 35.0%
! TTTTGGATGAGCTCTCTTAT+TGG - chr2_3:36633082-36633101 Msa0290030:intron 35.0%
TAATTCTTTATGTGCAGCTG+AGG - chr2_3:36633150-36633169 Msa0290030:intron 35.0%
CACAAATGGTGAGATAGATA+AGG - chr2_3:36633265-36633284 Msa0290030:intron 35.0%
GAACATAATGTCCTGAAACA+AGG + chr2_3:36633334-36633353 None:intergenic 35.0%
ACAATAACTTGGCTAAGTTG+AGG + chr2_3:36633356-36633375 None:intergenic 35.0%
! TTCGAGTTTATGTGGACAAA+TGG - chr2_3:36633607-36633626 Msa0290030:CDS 35.0%
GTGGACAAATGGTATGATTT+CGG - chr2_3:36633618-36633637 Msa0290030:CDS 35.0%
TGATTATCATTAGCATGGCA+AGG + chr2_3:36633778-36633797 None:intergenic 35.0%
ATAAATGCCACAGAATTGAG+TGG - chr2_3:36631814-36631833 Msa0290030:three_prime_UTR 35.0%
TACCTATCTACCATCTGAAA+TGG - chr2_3:36631842-36631861 Msa0290030:CDS 35.0%
TTAGAATTGGCCATTTCAGA+TGG + chr2_3:36631855-36631874 None:intergenic 35.0%
GTTCTGTTGCAATGTTACAT+TGG + chr2_3:36631926-36631945 None:intergenic 35.0%
!! TGATGTTGAAGTTTTGACCT+GGG + chr2_3:36631989-36632008 None:intergenic 35.0%
!! ATCAGCTTTGAACACTATTC+TGG - chr2_3:36632005-36632024 Msa0290030:CDS 35.0%
ATAACAGTGAATGAGGATGT+TGG - chr2_3:36632032-36632051 Msa0290030:CDS 35.0%
AAAAGAAGTGGCTTAGAAGT+AGG + chr2_3:36632101-36632120 None:intergenic 35.0%
! CTTCTAAGCCACTTCTTTTA+TGG - chr2_3:36632102-36632121 Msa0290030:CDS 35.0%
TAAGCAATAGAAGAACAACC+AGG + chr2_3:36632140-36632159 None:intergenic 35.0%
GGTTGTTCTTCTATTGCTTA+TGG - chr2_3:36632140-36632159 Msa0290030:intron 35.0%
TCACCTTGATTCCAAGAATA+AGG + chr2_3:36632227-36632246 None:intergenic 35.0%
!! CTTTATATTGACTCACCTGT+TGG - chr2_3:36632332-36632351 Msa0290030:CDS 35.0%
TATGAAAATCCAACTCCAAC+AGG + chr2_3:36632350-36632369 None:intergenic 35.0%
TCTGATGACATTCTCAACAA+CGG - chr2_3:36632386-36632405 Msa0290030:intron 35.0%
TGATCATACCAACTTTGTGT+TGG - chr2_3:36632496-36632515 Msa0290030:CDS 35.0%
GATCATACCAACTTTGTGTT+GGG - chr2_3:36632497-36632516 Msa0290030:CDS 35.0%
CTAAATGTATCCTATGGCTT+GGG + chr2_3:36632610-36632629 None:intergenic 35.0%
TCAAAGATCCTAATTACGGT+GGG - chr2_3:36632643-36632662 Msa0290030:intron 35.0%
CAGACGACCAAGATTAAATA+AGG - chr2_3:36632763-36632782 Msa0290030:intron 35.0%
TTGGCTGATGCTCATTATAT+TGG - chr2_3:36632881-36632900 Msa0290030:intron 35.0%
!! GCTCATTATATTGGTGCTTT+TGG - chr2_3:36632890-36632909 Msa0290030:intron 35.0%
AAACCAAACATACGCATCTA+TGG - chr2_3:36633037-36633056 Msa0290030:intron 35.0%
AACCAAACATACGCATCTAT+GGG - chr2_3:36633038-36633057 Msa0290030:intron 35.0%
CCAAAACAACTAGTCCATTA+GGG + chr2_3:36633068-36633087 None:intergenic 35.0%
TCCAAAACAACTAGTCCATT+AGG + chr2_3:36633069-36633088 None:intergenic 35.0%
! TTTTGGATGAGCTCTCTTAT+TGG - chr2_3:36633082-36633101 Msa0290030:intron 35.0%
TAATTCTTTATGTGCAGCTG+AGG - chr2_3:36633150-36633169 Msa0290030:intron 35.0%
CACAAATGGTGAGATAGATA+AGG - chr2_3:36633265-36633284 Msa0290030:intron 35.0%
GAACATAATGTCCTGAAACA+AGG + chr2_3:36633334-36633353 None:intergenic 35.0%
ACAATAACTTGGCTAAGTTG+AGG + chr2_3:36633356-36633375 None:intergenic 35.0%
! TTCGAGTTTATGTGGACAAA+TGG - chr2_3:36633607-36633626 Msa0290030:CDS 35.0%
GTGGACAAATGGTATGATTT+CGG - chr2_3:36633618-36633637 Msa0290030:CDS 35.0%
TGATTATCATTAGCATGGCA+AGG + chr2_3:36633778-36633797 None:intergenic 35.0%
TACAGTACCACTCAATTCTG+TGG + chr2_3:36631824-36631843 None:intergenic 40.0%
CTGAAATGGCCAATTCTAAG+TGG - chr2_3:36631856-36631875 Msa0290030:CDS 40.0%
ACAGAACCATTTGTCCAACA+AGG - chr2_3:36631939-36631958 Msa0290030:CDS 40.0%
!! CTGATGTTGAAGTTTTGACC+TGG + chr2_3:36631990-36632009 None:intergenic 40.0%
TTATGGTTTAATGGTGGTCC+TGG - chr2_3:36632119-36632138 Msa0290030:CDS 40.0%
TATTGCTTATGGTGAAGCTG+AGG - chr2_3:36632151-36632170 Msa0290030:intron 40.0%
TATGGTGAAGCTGAGGAAAT+TGG - chr2_3:36632158-36632177 Msa0290030:intron 40.0%
AACTTTGTGTTGGGAGAGTT+GGG - chr2_3:36632506-36632525 Msa0290030:CDS 40.0%
! CTGAGAATTAGTCTCATAGC+AGG - chr2_3:36632575-36632594 Msa0290030:intron 40.0%
CCTAAATGTATCCTATGGCT+TGG + chr2_3:36632611-36632630 None:intergenic 40.0%
CCAAGCCATAGGATACATTT+AGG - chr2_3:36632608-36632627 Msa0290030:intron 40.0%
AGACGCCTAAATGTATCCTA+TGG + chr2_3:36632616-36632635 None:intergenic 40.0%
GATACATTTAGGCGTCTACT+GGG - chr2_3:36632619-36632638 Msa0290030:intron 40.0%
ATACATTTAGGCGTCTACTG+GGG - chr2_3:36632620-36632639 Msa0290030:intron 40.0%
GGGGTCAAAGATCCTAATTA+CGG - chr2_3:36632639-36632658 Msa0290030:intron 40.0%
GTCAAAGATCCTAATTACGG+TGG - chr2_3:36632642-36632661 Msa0290030:intron 40.0%
TTATGACGAGTCCTCTGATT+TGG - chr2_3:36632862-36632881 Msa0290030:intron 40.0%
!! ATATTGGTGCTTTTGGTGTG+AGG - chr2_3:36632897-36632916 Msa0290030:intron 40.0%
AACCCATAGATGCGTATGTT+TGG + chr2_3:36633043-36633062 None:intergenic 40.0%
!!! CCCTAATGGACTAGTTGTTT+TGG - chr2_3:36633065-36633084 Msa0290030:intron 40.0%
GCTATGCAGGTAAACACAAA+TGG - chr2_3:36633251-36633270 Msa0290030:intron 40.0%
!! CCCTAATGACACGTTGTTTT+CGG + chr2_3:36633514-36633533 None:intergenic 40.0%
! CCGAAAACAACGTGTCATTA+GGG - chr2_3:36633511-36633530 Msa0290030:CDS 40.0%
! CGAAAACAACGTGTCATTAG+GGG - chr2_3:36633512-36633531 Msa0290030:CDS 40.0%
AGACGATTTCCATGATCAGT+TGG - chr2_3:36633579-36633598 Msa0290030:CDS 40.0%
GACGATTTCCATGATCAGTT+GGG - chr2_3:36633580-36633599 Msa0290030:CDS 40.0%
ACGATTTCCATGATCAGTTG+GGG - chr2_3:36633581-36633600 Msa0290030:CDS 40.0%
!!! TGGGGATTTTCGAGTTTATG+TGG - chr2_3:36633599-36633618 Msa0290030:CDS 40.0%
TCCTTTCACATGACTGTGAA+GGG + chr2_3:36633696-36633715 None:intergenic 40.0%
ATCCTTTCACATGACTGTGA+AGG + chr2_3:36633697-36633716 None:intergenic 40.0%
ACAGTCATGTGAAAGGATCT+TGG - chr2_3:36633699-36633718 Msa0290030:CDS 40.0%
GAGGAGTGAAGATACTGTAT+GGG + chr2_3:36633756-36633775 None:intergenic 40.0%
TTATCATTAGCATGGCAAGG+AGG + chr2_3:36633775-36633794 None:intergenic 40.0%
! CCTGCTGATTATCATTAGCA+TGG + chr2_3:36633783-36633802 None:intergenic 40.0%
CCATGCTAATGATAATCAGC+AGG - chr2_3:36633780-36633799 Msa0290030:CDS 40.0%
TACAGTACCACTCAATTCTG+TGG + chr2_3:36631824-36631843 None:intergenic 40.0%
CTGAAATGGCCAATTCTAAG+TGG - chr2_3:36631856-36631875 Msa0290030:CDS 40.0%
ACAGAACCATTTGTCCAACA+AGG - chr2_3:36631939-36631958 Msa0290030:CDS 40.0%
!! CTGATGTTGAAGTTTTGACC+TGG + chr2_3:36631990-36632009 None:intergenic 40.0%
TTATGGTTTAATGGTGGTCC+TGG - chr2_3:36632119-36632138 Msa0290030:CDS 40.0%
TATTGCTTATGGTGAAGCTG+AGG - chr2_3:36632151-36632170 Msa0290030:intron 40.0%
TATGGTGAAGCTGAGGAAAT+TGG - chr2_3:36632158-36632177 Msa0290030:intron 40.0%
AACTTTGTGTTGGGAGAGTT+GGG - chr2_3:36632506-36632525 Msa0290030:CDS 40.0%
! CTGAGAATTAGTCTCATAGC+AGG - chr2_3:36632575-36632594 Msa0290030:intron 40.0%
CCTAAATGTATCCTATGGCT+TGG + chr2_3:36632611-36632630 None:intergenic 40.0%
CCAAGCCATAGGATACATTT+AGG - chr2_3:36632608-36632627 Msa0290030:intron 40.0%
AGACGCCTAAATGTATCCTA+TGG + chr2_3:36632616-36632635 None:intergenic 40.0%
GATACATTTAGGCGTCTACT+GGG - chr2_3:36632619-36632638 Msa0290030:intron 40.0%
ATACATTTAGGCGTCTACTG+GGG - chr2_3:36632620-36632639 Msa0290030:intron 40.0%
GGGGTCAAAGATCCTAATTA+CGG - chr2_3:36632639-36632658 Msa0290030:intron 40.0%
GTCAAAGATCCTAATTACGG+TGG - chr2_3:36632642-36632661 Msa0290030:intron 40.0%
TTATGACGAGTCCTCTGATT+TGG - chr2_3:36632862-36632881 Msa0290030:intron 40.0%
!! ATATTGGTGCTTTTGGTGTG+AGG - chr2_3:36632897-36632916 Msa0290030:intron 40.0%
AACCCATAGATGCGTATGTT+TGG + chr2_3:36633043-36633062 None:intergenic 40.0%
!!! CCCTAATGGACTAGTTGTTT+TGG - chr2_3:36633065-36633084 Msa0290030:intron 40.0%
GCTATGCAGGTAAACACAAA+TGG - chr2_3:36633251-36633270 Msa0290030:intron 40.0%
!! CCCTAATGACACGTTGTTTT+CGG + chr2_3:36633514-36633533 None:intergenic 40.0%
! CCGAAAACAACGTGTCATTA+GGG - chr2_3:36633511-36633530 Msa0290030:CDS 40.0%
! CGAAAACAACGTGTCATTAG+GGG - chr2_3:36633512-36633531 Msa0290030:CDS 40.0%
AGACGATTTCCATGATCAGT+TGG - chr2_3:36633579-36633598 Msa0290030:CDS 40.0%
GACGATTTCCATGATCAGTT+GGG - chr2_3:36633580-36633599 Msa0290030:CDS 40.0%
ACGATTTCCATGATCAGTTG+GGG - chr2_3:36633581-36633600 Msa0290030:CDS 40.0%
!!! TGGGGATTTTCGAGTTTATG+TGG - chr2_3:36633599-36633618 Msa0290030:CDS 40.0%
TCCTTTCACATGACTGTGAA+GGG + chr2_3:36633696-36633715 None:intergenic 40.0%
ATCCTTTCACATGACTGTGA+AGG + chr2_3:36633697-36633716 None:intergenic 40.0%
ACAGTCATGTGAAAGGATCT+TGG - chr2_3:36633699-36633718 Msa0290030:CDS 40.0%
GAGGAGTGAAGATACTGTAT+GGG + chr2_3:36633756-36633775 None:intergenic 40.0%
TTATCATTAGCATGGCAAGG+AGG + chr2_3:36633775-36633794 None:intergenic 40.0%
! CCTGCTGATTATCATTAGCA+TGG + chr2_3:36633783-36633802 None:intergenic 40.0%
CCATGCTAATGATAATCAGC+AGG - chr2_3:36633780-36633799 Msa0290030:CDS 40.0%
GGCCATTTCAGATGGTAGAT+AGG + chr2_3:36631847-36631866 None:intergenic 45.0%
ACCATTTGTCCAACAAGGAC+AGG - chr2_3:36631944-36631963 Msa0290030:CDS 45.0%
TCCTGTCCTTGTTGGACAAA+TGG + chr2_3:36631948-36631967 None:intergenic 45.0%
CAATCTTGTCCTGTCCTTGT+TGG + chr2_3:36631956-36631975 None:intergenic 45.0%
CAACAAGGACAGGACAAGAT+TGG - chr2_3:36631954-36631973 Msa0290030:CDS 45.0%
CAGTGAATGAGGATGTTGGT+AGG - chr2_3:36632036-36632055 Msa0290030:CDS 45.0%
! ATTGACTCACCTGTTGGAGT+TGG - chr2_3:36632338-36632357 Msa0290030:CDS 45.0%
TTCTCAACAACGGCGATAAG+AGG - chr2_3:36632396-36632415 Msa0290030:intron 45.0%
CAACTCTCCCAACACAAAGT+TGG + chr2_3:36632507-36632526 None:intergenic 45.0%
CAACTTTGTGTTGGGAGAGT+TGG - chr2_3:36632505-36632524 Msa0290030:CDS 45.0%
TGAGACTAATTCTCAGCAGC+AGG + chr2_3:36632571-36632590 None:intergenic 45.0%
GGATACATTTAGGCGTCTAC+TGG - chr2_3:36632618-36632637 Msa0290030:intron 45.0%
TTTCGTCACCCACCGTAATT+AGG + chr2_3:36632654-36632673 None:intergenic 45.0%
GTGGGTGACGAAAAATGTCT+TGG - chr2_3:36632661-36632680 Msa0290030:intron 45.0%
GTCGTCTGACCACAAATCAA+AGG + chr2_3:36632751-36632770 None:intergenic 45.0%
ATGAGCATCAGCCAAATCAG+AGG + chr2_3:36632876-36632895 None:intergenic 45.0%
ACGTCATGACACTTCACTCA+TGG + chr2_3:36632945-36632964 None:intergenic 45.0%
CATCTATGGGTTCTCCCTAA+TGG - chr2_3:36633051-36633070 Msa0290030:intron 45.0%
! GCCGAAAACAACGTGTCATT+AGG - chr2_3:36633510-36633529 Msa0290030:CDS 45.0%
CGAAAATCCCCAACTGATCA+TGG + chr2_3:36633591-36633610 None:intergenic 45.0%
ACCCTTCACAGTCATGTGAA+AGG - chr2_3:36633692-36633711 Msa0290030:CDS 45.0%
GGAGGAGTGAAGATACTGTA+TGG + chr2_3:36633757-36633776 None:intergenic 45.0%
AAGCCTTCAACCAATGGTGT+CGG - chr2_3:36633934-36633953 Msa0290030:five_prime_UTR 45.0%
GGCCATTTCAGATGGTAGAT+AGG + chr2_3:36631847-36631866 None:intergenic 45.0%
ACCATTTGTCCAACAAGGAC+AGG - chr2_3:36631944-36631963 Msa0290030:CDS 45.0%
TCCTGTCCTTGTTGGACAAA+TGG + chr2_3:36631948-36631967 None:intergenic 45.0%
CAATCTTGTCCTGTCCTTGT+TGG + chr2_3:36631956-36631975 None:intergenic 45.0%
CAACAAGGACAGGACAAGAT+TGG - chr2_3:36631954-36631973 Msa0290030:CDS 45.0%
CAGTGAATGAGGATGTTGGT+AGG - chr2_3:36632036-36632055 Msa0290030:CDS 45.0%
! ATTGACTCACCTGTTGGAGT+TGG - chr2_3:36632338-36632357 Msa0290030:CDS 45.0%
TTCTCAACAACGGCGATAAG+AGG - chr2_3:36632396-36632415 Msa0290030:intron 45.0%
CAACTCTCCCAACACAAAGT+TGG + chr2_3:36632507-36632526 None:intergenic 45.0%
CAACTTTGTGTTGGGAGAGT+TGG - chr2_3:36632505-36632524 Msa0290030:CDS 45.0%
TGAGACTAATTCTCAGCAGC+AGG + chr2_3:36632571-36632590 None:intergenic 45.0%
GGATACATTTAGGCGTCTAC+TGG - chr2_3:36632618-36632637 Msa0290030:intron 45.0%
TTTCGTCACCCACCGTAATT+AGG + chr2_3:36632654-36632673 None:intergenic 45.0%
GTGGGTGACGAAAAATGTCT+TGG - chr2_3:36632661-36632680 Msa0290030:intron 45.0%
GTCGTCTGACCACAAATCAA+AGG + chr2_3:36632751-36632770 None:intergenic 45.0%
ATGAGCATCAGCCAAATCAG+AGG + chr2_3:36632876-36632895 None:intergenic 45.0%
ACGTCATGACACTTCACTCA+TGG + chr2_3:36632945-36632964 None:intergenic 45.0%
CATCTATGGGTTCTCCCTAA+TGG - chr2_3:36633051-36633070 Msa0290030:intron 45.0%
! GCCGAAAACAACGTGTCATT+AGG - chr2_3:36633510-36633529 Msa0290030:CDS 45.0%
CGAAAATCCCCAACTGATCA+TGG + chr2_3:36633591-36633610 None:intergenic 45.0%
ACCCTTCACAGTCATGTGAA+AGG - chr2_3:36633692-36633711 Msa0290030:CDS 45.0%
GGAGGAGTGAAGATACTGTA+TGG + chr2_3:36633757-36633776 None:intergenic 45.0%
AAGCCTTCAACCAATGGTGT+CGG - chr2_3:36633934-36633953 Msa0290030:five_prime_UTR 45.0%
! AAGATTGGTAGAGCACTCCC+AGG - chr2_3:36631969-36631988 Msa0290030:CDS 50.0%
AACAACGGCGATAAGAGGAC+AGG - chr2_3:36632401-36632420 Msa0290030:intron 50.0%
TTTGTGTTGGGAGAGTTGGG+AGG - chr2_3:36632509-36632528 Msa0290030:CDS 50.0%
TAGTCTCATAGCAGGCCCAA+AGG - chr2_3:36632583-36632602 Msa0290030:intron 50.0%
AGTCTCATAGCAGGCCCAAA+GGG - chr2_3:36632584-36632603 Msa0290030:intron 50.0%
TATGCATCTCTGTCTGCTGC+AGG - chr2_3:36633540-36633559 Msa0290030:CDS 50.0%
! CCATTGGTTGAAGGCTTGTC+CGG + chr2_3:36633931-36633950 None:intergenic 50.0%
!! CTATGTAGCACCGACACCAT+TGG + chr2_3:36633947-36633966 None:intergenic 50.0%
! AAGATTGGTAGAGCACTCCC+AGG - chr2_3:36631969-36631988 Msa0290030:CDS 50.0%
AACAACGGCGATAAGAGGAC+AGG - chr2_3:36632401-36632420 Msa0290030:intron 50.0%
TTTGTGTTGGGAGAGTTGGG+AGG - chr2_3:36632509-36632528 Msa0290030:CDS 50.0%
TAGTCTCATAGCAGGCCCAA+AGG - chr2_3:36632583-36632602 Msa0290030:intron 50.0%
AGTCTCATAGCAGGCCCAAA+GGG - chr2_3:36632584-36632603 Msa0290030:intron 50.0%
TATGCATCTCTGTCTGCTGC+AGG - chr2_3:36633540-36633559 Msa0290030:CDS 50.0%
! CCATTGGTTGAAGGCTTGTC+CGG + chr2_3:36633931-36633950 None:intergenic 50.0%
!! CTATGTAGCACCGACACCAT+TGG + chr2_3:36633947-36633966 None:intergenic 50.0%
CGGCGATAAGAGGACAGGTA+AGG - chr2_3:36632406-36632425 Msa0290030:intron 55.0%
! TCCTATGGCTTGGGCCCTTT+GGG + chr2_3:36632601-36632620 None:intergenic 55.0%
! ATCCTATGGCTTGGGCCCTT+TGG + chr2_3:36632602-36632621 None:intergenic 55.0%
ATCAGCGGTGAGAGCTATGC+AGG - chr2_3:36633238-36633257 Msa0290030:intron 55.0%
CATCTCTGTCTGCTGCAGGT+AGG - chr2_3:36633544-36633563 Msa0290030:CDS 55.0%
CCGGACAAGCCTTCAACCAA+TGG - chr2_3:36633928-36633947 Msa0290030:five_prime_UTR 55.0%
! GCACCGACACCATTGGTTGA+AGG + chr2_3:36633940-36633959 None:intergenic 55.0%
CGGCGATAAGAGGACAGGTA+AGG - chr2_3:36632406-36632425 Msa0290030:intron 55.0%
! TCCTATGGCTTGGGCCCTTT+GGG + chr2_3:36632601-36632620 None:intergenic 55.0%
! ATCCTATGGCTTGGGCCCTT+TGG + chr2_3:36632602-36632621 None:intergenic 55.0%
ATCAGCGGTGAGAGCTATGC+AGG - chr2_3:36633238-36633257 Msa0290030:intron 55.0%
CATCTCTGTCTGCTGCAGGT+AGG - chr2_3:36633544-36633563 Msa0290030:CDS 55.0%
CCGGACAAGCCTTCAACCAA+TGG - chr2_3:36633928-36633947 Msa0290030:five_prime_UTR 55.0%
! GCACCGACACCATTGGTTGA+AGG + chr2_3:36633940-36633959 None:intergenic 55.0%
TGAAGGCTTGTCCGGCGTCT+GGG + chr2_3:36633923-36633942 None:intergenic 60.0%
TTGAAGGCTTGTCCGGCGTC+TGG + chr2_3:36633924-36633943 None:intergenic 60.0%
TGAAGGCTTGTCCGGCGTCT+GGG + chr2_3:36633923-36633942 None:intergenic 60.0%
TTGAAGGCTTGTCCGGCGTC+TGG + chr2_3:36633924-36633943 None:intergenic 60.0%
GTTGGGAGGTAGCCCATCCC+TGG - chr2_3:36632523-36632542 Msa0290030:CDS 65.0%
GCCCAAAGGGCCCAAGCCAT+AGG - chr2_3:36632597-36632616 Msa0290030:intron 65.0%
CACTGACACGTCCCAGACGC+CGG - chr2_3:36633909-36633928 Msa0290030:five_prime_UTR 65.0%
GTTGGGAGGTAGCCCATCCC+TGG - chr2_3:36632523-36632542 Msa0290030:CDS 65.0%
GCCCAAAGGGCCCAAGCCAT+AGG - chr2_3:36632597-36632616 Msa0290030:intron 65.0%
CACTGACACGTCCCAGACGC+CGG - chr2_3:36633909-36633928 Msa0290030:five_prime_UTR 65.0%
Chromosome Type Strat End Strand Name
chr2_3 gene 36631743 36633973 36631743 ID=Msa0290030;Name=Msa0290030
chr2_3 mRNA 36631743 36633973 36631743 ID=Msa0290030-mRNA-1;Parent=Msa0290030;Name=Msa0290030-mRNA-1;_AED=0.11;_eAED=0.11;_QI=118|1|1|1|1|1|5|97|325
chr2_3 exon 36631743 36632154 36631743 ID=Msa0290030-mRNA-1:exon:12005;Parent=Msa0290030-mRNA-1
chr2_3 exon 36632289 36632374 36632289 ID=Msa0290030-mRNA-1:exon:12004;Parent=Msa0290030-mRNA-1
chr2_3 exon 36632457 36632549 36632457 ID=Msa0290030-mRNA-1:exon:12003;Parent=Msa0290030-mRNA-1
chr2_3 exon 36633294 36633395 36633294 ID=Msa0290030-mRNA-1:exon:12002;Parent=Msa0290030-mRNA-1
chr2_3 exon 36633474 36633973 36633474 ID=Msa0290030-mRNA-1:exon:12001;Parent=Msa0290030-mRNA-1
chr2_3 five_prime_UTR 36633856 36633973 36633856 ID=Msa0290030-mRNA-1:five_prime_utr;Parent=Msa0290030-mRNA-1
chr2_3 CDS 36633474 36633855 36633474 ID=Msa0290030-mRNA-1:cds;Parent=Msa0290030-mRNA-1
chr2_3 CDS 36633294 36633395 36633294 ID=Msa0290030-mRNA-1:cds;Parent=Msa0290030-mRNA-1
chr2_3 CDS 36632457 36632549 36632457 ID=Msa0290030-mRNA-1:cds;Parent=Msa0290030-mRNA-1
chr2_3 CDS 36632289 36632374 36632289 ID=Msa0290030-mRNA-1:cds;Parent=Msa0290030-mRNA-1
chr2_3 CDS 36631840 36632154 36631840 ID=Msa0290030-mRNA-1:cds;Parent=Msa0290030-mRNA-1
chr2_3 three_prime_UTR 36631743 36631839 36631743 ID=Msa0290030-mRNA-1:three_prime_utr;Parent=Msa0290030-mRNA-1
Gene Sequence

>Msa0290030

ATGGCCAATTCTAAGTGGTCTCAAATATTGTTCATTGTCATCATAACATTGGCAACCCTTTTCCAATGTAACATTGCAACAGAACCATTTGTCCAACAAGGACAGGACAAGATTGGTAGAGCACTCCCAGGTCAAAACTTCAACATCAGCTTTGAACACTATTCTGGTTATATAACAGTGAATGAGGATGTTGGTAGGAATTTGTTTTACTGGTTCATTCAAGCTGATCATGTAGATCCTACTTCTAAGCCACTTCTTTTATGGTTTAATGGTGGTCCTGGTTGTTCTTCTATTGCTTATGGTGAAGCTGAGGAAATTGGTCCTTTTCATATTAATTCAGATGGCAAAAACCTTCATTTTAATCCTTATTCTTGGAATCAAGTTGCCAATATTCTTTATATTGACTCACCTGTTGGAGTTGGATTTTCATATTCAACAAAGAATTCATCTGATGACATTCTCAACAACGGCGATAAGAGGACAGCTGAGGATAATCTCATATTTCTATTGAAGTGGTTTGAGCGTTTTCCACAATACAAAAAAACAGACTTTTTCATCAGCGGTGAGAGCTATGCAGGACATTATGTTCCTCAACTTAGCCAAGTTATTGTCAAGTACAACTCAGCTACAAAACATGATTCTATAAATTTCAAAGGTTTCATGGTAGGAAATGCTCTAACAGACGATTTCCATGATCAGTTGGGGATTTTCGAGTTTATGTGGACAAATGGTATGATTTCGGATCAAACATTCAAGCTCTTGAACTTGCTATGTGATTTTCAGTCAGTCGAACACCCTTCACAGTCATGTGAAAGGATCTTGGAAATTGCTGATAAAGAAATGGGTAATATAGACCCATACAGTATCTTCACTCCTCCTTGCCATGCTAATGATAATCAGCAGGTCAAAAGAAAGAATGTAAGTTACTATTCTCGCATATTTACCTACACAAACATCAATAATTATTTAATAAAATAG
Protein sequence

>Msa0290030

MANSKWSQILFIVIITLATLFQCNIATEPFVQQGQDKIGRALPGQNFNISFEHYSGYITVNEDVGRNLFYWFIQADHVDPTSKPLLLWFNGGPGCSSIAYGEAEEIGPFHINSDGKNLHFNPYSWNQVANILYIDSPVGVGFSYSTKNSSDDILNNGDKRTAEDNLIFLLKWFERFPQYKKTDFFISGESYAGHYVPQLSQVIVKYNSATKHDSINFKGFMVGNALTDDFHDQLGIFEFMWTNGMISDQTFKLLNLLCDFQSVEHPSQSCERILEIADKEMGNIDPYSIFTPPCHANDNQQVKRKNVSYYSRIFTYTNINNYLIK*