AlfalfaGEDB | Msa1335690

M. sativa cultivar zhongmu-4 / Msa1335690

KEGG: K03549
GO: GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006813 GO:0008150 GO:0008324 GO:0009987 GO:0015075 GO:0015077 GO:0015079 GO:0015318 GO:0015672 GO:0016020 GO:0022857 GO:0022890 GO:0030001 GO:0034220 GO:0044464 GO:0046873 GO:0051179 GO:0051234 GO:0055085 GO:0071804 GO:0071805 GO:0071944 GO:0098655 GO:0098660 GO:0098662
PFAM: PF02705.19

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1335690	XP_013461519.1	87.798	336	6	1	1	301	1	336	0.0	594

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1335690	sp\|O22881\|POT2_ARATH	71.217	337	61	4	1	301	1	337	5.35e-163	476

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1335690	A0A072V0K3	87.798	336	6	1	1	301	1	336	0.0	594

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0002560	Msa1335690	0.802934	4.431977e-49	-8.615850e-47
Msa0002680	Msa1335690	0.811567	6.561963e-51	-8.615850e-47
Msa0007970	Msa1335690	0.804894	1.734870e-49	-8.615850e-47
Msa0012940	Msa1335690	0.811988	5.314658e-51	-8.615850e-47
Msa0022750	Msa1335690	-0.801307	9.578997e-49	-8.615850e-47
Msa0039250	Msa1335690	0.864297	1.345411e-64	-8.615850e-47
Msa0041690	Msa1335690	0.813969	1.955036e-51	-8.615850e-47
Msa0054530	Msa1335690	0.849945	2.334150e-60	-8.615850e-47
Msa0069600	Msa1335690	0.832594	8.647772e-56	-8.615850e-47
Msa0089980	Msa1335690	0.816607	5.068208e-52	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1335690	MtrunA17_Chr3g0128831	87.798	336	6	1	1	301	1	336	0.0	594
Msa1335690	MtrunA17_Chr6g0451081	64.939	328	75	3	14	301	13	340	8.91e-147	431
Msa1335690	MtrunA17_Chr5g0413721	58.017	343	101	6	1	301	1	342	2.96e-130	391
Msa1335690	MtrunA17_Chr5g0430731	54.037	322	113	4	14	301	18	338	2.85e-115	349
Msa1335690	MtrunA17_Chr6g0461871	51.807	332	120	4	4	301	12	337	3.99e-106	326
Msa1335690	MtrunA17_Chr4g0055471	45.672	335	144	5	1	301	42	372	1.50e-94	296
Msa1335690	MtrunA17_Chr8g0387661	43.881	335	152	4	2	301	7	340	3.66e-93	292
Msa1335690	MtrunA17_Chr7g0268981	44.000	325	142	4	13	301	58	378	6.72e-85	270
Msa1335690	MtrunA17_Chr2g0297291	44.083	338	146	6	1	301	28	359	7.26e-84	268
Msa1335690	MtrunA17_Chr4g0052401	44.675	338	144	6	1	301	28	359	1.30e-83	267

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1335690	AT2G40540.1	71.217	337	61	4	1	301	1	337	5.44e-164	476
Msa1335690	AT2G40540.5	71.217	337	61	4	1	301	1	337	5.44e-164	476
Msa1335690	AT2G40540.4	71.217	337	61	4	1	301	1	337	5.44e-164	476
Msa1335690	AT2G40540.2	71.217	337	61	4	1	301	1	337	5.44e-164	476
Msa1335690	AT2G40540.3	71.217	337	61	4	1	301	1	337	5.44e-164	476
Msa1335690	AT5G14880.1	63.158	342	84	6	1	301	1	341	2.11e-140	415
Msa1335690	AT1G70300.1	60.058	343	93	5	1	301	1	341	3.51e-139	412
Msa1335690	AT2G30070.1	51.863	322	120	3	14	301	18	338	1.65e-110	336
Msa1335690	AT4G23640.1	50.926	324	124	3	12	301	2	324	1.45e-102	317
Msa1335690	AT3G02050.1	49.851	335	130	4	4	301	5	338	1.79e-97	304

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Find 64 sgRNAs with CRISPR-Local

Find 303 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGACAAGGATAAGTGGA+TGG	0.612497	tig0000667:-878	Msa1335690:CDS
AAACAAATGGATCTTGAACC+TGG	0.462548	tig0000667:-2284	Msa1335690:exon
AAATGGATCTTGAACCTGGG+AGG	0.693417	tig0000667:-2280	Msa1335690:CDS
AACAAATGGATCTTGAACCT+GGG	0.562805	tig0000667:-2283	Msa1335690:exon
AACTGAGACAGGAAACAGAC+AGG	0.563452	tig0000667:-2395	Msa1335690:five_prime_UTR
AAGAACTTGAACATATAATA+CGG	0.479223	tig0000667:+903	Msa1335690:intergenic
AAGTGCAGGATATACCAGAA+AGG	0.642926	tig0000667:+216	Msa1335690:intergenic
AATGAAACTCACATATCACA+TGG	0.701225	tig0000667:+2494	Msa1335680:intergenic
AATTTAGAATACTCTTTCTC+TGG	0.377126	tig0000667:+1686	Msa1335690:intergenic
ACAAACACATATTTGAAGAG+TGG	0.592621	tig0000667:+1947	Msa1335690:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AATGAAACTCACATATCACA+TGG	+	tig0000667:151-170	Msa0411470:intergenic	30.0%
GTGCTTGTAAAAACATACAA+TGG	+	tig0000667:590-609	Msa1335690:intergenic	30.0%
GAGACTAATGAAGAGATTTA+TGG	-	tig0000667:635-654	Msa1335690:intron	30.0%
ACAAACACATATTTGAAGAG+TGG	+	tig0000667:698-717	Msa1335690:intergenic	30.0%
TTCTTAGAGCTGATGATAAT+GGG	-	tig0000667:720-739	Msa1335690:intron	30.0%
AGCACTTTCTTCATATAAGA+TGG	-	tig0000667:925-944	Msa1335690:CDS	30.0%
ACTTTCTTCATATAAGATGG+AGG	-	tig0000667:928-947	Msa1335690:CDS	30.0%
TTGGTACTTGTATGGTAATT+GGG	-	tig0000667:1038-1057	Msa1335690:CDS	30.0%
TAGTTAATGAACTTCGGTTT+AGG	-	tig0000667:1151-1170	Msa1335690:intron	30.0%
ATATGAGTTCGAACTGTAAT+TGG	-	tig0000667:1191-1210	Msa1335690:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
tig0000667	gene	132	2532	132	ID=Msa1335690;Name=Msa1335690
tig0000667	mRNA	132	2532	132	ID=Msa1335690-mRNA-1;Parent=Msa1335690;Name=Msa1335690-mRNA-1;_AED=0.08;_eAED=0.08;_QI=232\|0.8\|0.66\|1\|0.8\|1\|6\|0\|301
tig0000667	exon	132	248	132	ID=Msa1335690-mRNA-1:exon:335;Parent=Msa1335690-mRNA-1
tig0000667	exon	354	406	354	ID=Msa1335690-mRNA-1:exon:334;Parent=Msa1335690-mRNA-1
tig0000667	exon	844	1104	844	ID=Msa1335690-mRNA-1:exon:333;Parent=Msa1335690-mRNA-1
tig0000667	exon	1624	1818	1624	ID=Msa1335690-mRNA-1:exon:332;Parent=Msa1335690-mRNA-1
tig0000667	exon	1918	2152	1918	ID=Msa1335690-mRNA-1:exon:331;Parent=Msa1335690-mRNA-1
tig0000667	exon	2259	2532	2259	ID=Msa1335690-mRNA-1:exon:330;Parent=Msa1335690-mRNA-1
tig0000667	five_prime_UTR	2301	2532	2301	ID=Msa1335690-mRNA-1:five_prime_utr;Parent=Msa1335690-mRNA-1
tig0000667	CDS	2259	2300	2259	ID=Msa1335690-mRNA-1:cds;Parent=Msa1335690-mRNA-1
tig0000667	CDS	1918	2152	1918	ID=Msa1335690-mRNA-1:cds;Parent=Msa1335690-mRNA-1
tig0000667	CDS	1624	1818	1624	ID=Msa1335690-mRNA-1:cds;Parent=Msa1335690-mRNA-1
tig0000667	CDS	844	1104	844	ID=Msa1335690-mRNA-1:cds;Parent=Msa1335690-mRNA-1
tig0000667	CDS	354	406	354	ID=Msa1335690-mRNA-1:cds;Parent=Msa1335690-mRNA-1
tig0000667	CDS	132	248	132	ID=Msa1335690-mRNA-1:cds;Parent=Msa1335690-mRNA-1

Gene Sequence

>Msa1335690

ATGGATCTTGAACCTGGGAGGAAGTGTTGGGATAGTTCAAAGAGAGATTCTTGGAAGACTATTCTGCTACTGGCTTACCAGAGTCTTGGTGTTGTATATGGAGACTTGAGTATTTCTCCATTGTATGTTTTTACAAGCACTTTTGCTGAAGATATTGAACATTCAGAGACTAATGAAGAGATTTATGGCACACTTTCTTTTGTTTTCTGGACTCTTACATTGATTCCACTCTTCAAATATGTGTTTGTTGTTCTTAGAGCTGATGATAATGGGGAAGGTGGTACTTTTGCTCTTTATTCATTGATTTGTAGGCATGCGAAAGTGAGTCTTTTACCAAACAGACAGCATGCTGATGAAGCACTTTCTTCATATAAGATGGAGGAGCCTCCAGAGAAAGAGTATTCTAAATTTAAGATACTGCTTGAGAAGTACAAGACTTTGCATACTGCTCTTCTGATTGTGGTTCTTCTTGATGCTGTGATTCCCATCACTTGCTTCATACTGGTGTGTTTGTTTGCACTTCAACACTATGGTACACATAAGGTTGGGTTCTTTTTTGCTCCAATTGTGCTGACATGGCTACTGTGCATTAGCACACTTGGCGTATATAATATATTCAAATGGAATCCGCATGTATATAAAGCTCTTTCGCCGTATTATATGTTCAAGTTCTTGAAAAAGACAAGGATAAGTGGATGGCTGTCTTTGGGTGGAATATTACTTTGTATAACAGGCTCAGAAGCTATGTTTGCTGATCTTGGTCATTTCAATTATATGGCCATTCAGATTGCATTCACCTTTCTGGTATATCCTGCACTTATATTGGCATATATGGGTCAAGCTGCGTACTTGTCACAACATCACGATGCTGATCTACGAATCAGCTACTATGTCTCCGTTCCA

Protein sequence

>Msa1335690

MDLEPGRKCWDSSKRDSWKTILLLAYQSLGVVYGDLSISPLYVFTSTFAEDIEHSETNEEIYGTLSFVFWTLTLIPLFKYVFVVLRADDNGEGGTFALYSLICRHAKVSLLPNRQHADEALSSYKMEEPPEKEYSKFKILLEKYKTLHTALLIVVLLDAVIPITCFILVCLFALQHYGTHKVGFFFAPIVLTWLLCISTLGVYNIFKWNPHVYKALSPYYMFKFLKKTRISGWLSLGGILLCITGSEAMFADLGHFNYMAIQIAFTFLVYPALILAYMGQAAYLSQHHDADLRISYYVSVP