Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1335690 | XP_013461519.1 | 87.798 | 336 | 6 | 1 | 1 | 301 | 1 | 336 | 0.0 | 594 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1335690 | sp|O22881|POT2_ARATH | 71.217 | 337 | 61 | 4 | 1 | 301 | 1 | 337 | 5.35e-163 | 476 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1335690 | A0A072V0K3 | 87.798 | 336 | 6 | 1 | 1 | 301 | 1 | 336 | 0.0 | 594 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0002560 | Msa1335690 | 0.802934 | 4.431977e-49 | -8.615850e-47 |
| Msa0002680 | Msa1335690 | 0.811567 | 6.561963e-51 | -8.615850e-47 |
| Msa0007970 | Msa1335690 | 0.804894 | 1.734870e-49 | -8.615850e-47 |
| Msa0012940 | Msa1335690 | 0.811988 | 5.314658e-51 | -8.615850e-47 |
| Msa0022750 | Msa1335690 | -0.801307 | 9.578997e-49 | -8.615850e-47 |
| Msa0039250 | Msa1335690 | 0.864297 | 1.345411e-64 | -8.615850e-47 |
| Msa0041690 | Msa1335690 | 0.813969 | 1.955036e-51 | -8.615850e-47 |
| Msa0054530 | Msa1335690 | 0.849945 | 2.334150e-60 | -8.615850e-47 |
| Msa0069600 | Msa1335690 | 0.832594 | 8.647772e-56 | -8.615850e-47 |
| Msa0089980 | Msa1335690 | 0.816607 | 5.068208e-52 | -8.615850e-47 |
| Msa0090010 | Msa1335690 | 0.812084 | 5.065350e-51 | -8.615850e-47 |
| Msa0106620 | Msa1335690 | 0.802715 | 4.918791e-49 | -8.615850e-47 |
| Msa0108390 | Msa1335690 | 0.801402 | 9.156228e-49 | -8.615850e-47 |
| Msa0116790 | Msa1335690 | 0.831542 | 1.573508e-55 | -8.615850e-47 |
| Msa0626270 | Msa1335690 | 0.812254 | 4.650671e-51 | -8.615850e-47 |
| Msa0628420 | Msa1335690 | 0.803587 | 3.247261e-49 | -8.615850e-47 |
| Msa0644030 | Msa1335690 | 0.807639 | 4.582308e-50 | -8.615850e-47 |
| Msa0664540 | Msa1335690 | 0.800542 | 1.372479e-48 | -8.615850e-47 |
| Msa0689760 | Msa1335690 | 0.832037 | 1.187788e-55 | -8.615850e-47 |
| Msa0698100 | Msa1335690 | 0.814465 | 1.519960e-51 | -8.615850e-47 |
| Msa0716860 | Msa1335690 | 0.835170 | 1.961166e-56 | -8.615850e-47 |
| Msa0743530 | Msa1335690 | 0.811979 | 5.338221e-51 | -8.615850e-47 |
| Msa0749400 | Msa1335690 | 0.812704 | 3.708789e-51 | -8.615850e-47 |
| Msa0755150 | Msa1335690 | 0.810368 | 1.193596e-50 | -8.615850e-47 |
| Msa0757800 | Msa1335690 | 0.815630 | 8.379607e-52 | -8.615850e-47 |
| Msa0789560 | Msa1335690 | 0.808195 | 3.489593e-50 | -8.615850e-47 |
| Msa0133720 | Msa1335690 | 0.861139 | 1.265045e-63 | -8.615850e-47 |
| Msa0133820 | Msa1335690 | 0.870746 | 1.155825e-66 | -8.615850e-47 |
| Msa0138210 | Msa1335690 | 0.803956 | 2.721984e-49 | -8.615850e-47 |
| Msa0138360 | Msa1335690 | 0.835981 | 1.222586e-56 | -8.615850e-47 |
| Msa0147980 | Msa1335690 | 0.839960 | 1.158923e-57 | -8.615850e-47 |
| Msa0177170 | Msa1335690 | 0.811546 | 6.632661e-51 | -8.615850e-47 |
| Msa0192640 | Msa1335690 | 0.800759 | 1.239662e-48 | -8.615850e-47 |
| Msa0230370 | Msa1335690 | 0.805258 | 1.455756e-49 | -8.615850e-47 |
| Msa1252850 | Msa1335690 | -0.808736 | 2.675141e-50 | -8.615850e-47 |
| Msa1259640 | Msa1335690 | 0.833925 | 4.029194e-56 | -8.615850e-47 |
| Msa1261070 | Msa1335690 | 0.804999 | 1.649848e-49 | -8.615850e-47 |
| Msa1329450 | Msa1335690 | 0.800342 | 1.507746e-48 | -8.615850e-47 |
| Msa1329790 | Msa1335690 | 0.834322 | 3.204809e-56 | -8.615850e-47 |
| Msa1335690 | Msa1344310 | 0.804562 | 2.035774e-49 | -8.615850e-47 |
| Msa1335690 | Msa1371520 | 0.827023 | 1.967056e-54 | -8.615850e-47 |
| Msa1335690 | Msa1393820 | 0.838107 | 3.499226e-57 | -8.615850e-47 |
| Msa1335690 | Msa1409950 | 0.825218 | 5.284394e-54 | -8.615850e-47 |
| Msa1335690 | Msa1411950 | 0.821183 | 4.622630e-53 | -8.615850e-47 |
| Msa1335690 | Msa1420250 | 0.831877 | 1.300916e-55 | -8.615850e-47 |
| Msa1335690 | Msa1426910 | 0.815555 | 8.705092e-52 | -8.615850e-47 |
| Msa1335690 | Msa1439610 | 0.810093 | 1.367850e-50 | -8.615850e-47 |
| Msa1335690 | Msa1443310 | 0.802707 | 4.936488e-49 | -8.615850e-47 |
| Msa1335690 | Msa1467000 | 0.804394 | 2.206523e-49 | -8.615850e-47 |
| Msa0395980 | Msa1335690 | 0.809689 | 1.670977e-50 | -8.615850e-47 |
| Msa0411410 | Msa1335690 | 0.804522 | 2.074309e-49 | -8.615850e-47 |
| Msa0423840 | Msa1335690 | 0.807765 | 4.308492e-50 | -8.615850e-47 |
| Msa0431410 | Msa1335690 | 0.802857 | 4.598426e-49 | -8.615850e-47 |
| Msa0468250 | Msa1335690 | 0.811590 | 6.487918e-51 | -8.615850e-47 |
| Msa0996020 | Msa1335690 | 0.806409 | 8.341009e-50 | -8.615850e-47 |
| Msa1010070 | Msa1335690 | 0.822957 | 1.793746e-53 | -8.615850e-47 |
| Msa1050910 | Msa1335690 | 0.813723 | 2.215925e-51 | -8.615850e-47 |
| Msa1050960 | Msa1335690 | 0.821944 | 3.083964e-53 | -8.615850e-47 |
| Msa1072600 | Msa1335690 | 0.834690 | 2.590656e-56 | -8.615850e-47 |
| Msa1095790 | Msa1335690 | 0.815206 | 1.040814e-51 | -8.615850e-47 |
| Msa1098890 | Msa1335690 | 0.806857 | 6.708628e-50 | -8.615850e-47 |
| Msa0241830 | Msa1335690 | 0.811610 | 6.422793e-51 | -8.615850e-47 |
| Msa0290030 | Msa1335690 | 0.800972 | 1.121350e-48 | -8.615850e-47 |
| Msa0307860 | Msa1335690 | 0.801868 | 7.347265e-49 | -8.615850e-47 |
| Msa0318880 | Msa1335690 | 0.803870 | 2.835861e-49 | -8.615850e-47 |
| Msa0322900 | Msa1335690 | 0.831355 | 1.750124e-55 | -8.615850e-47 |
| Msa0358400 | Msa1335690 | 0.823699 | 1.203635e-53 | -8.615850e-47 |
| Msa0363810 | Msa1335690 | 0.801904 | 7.225725e-49 | -8.615850e-47 |
| Msa1127430 | Msa1335690 | 0.809644 | 1.708898e-50 | -8.615850e-47 |
| Msa1127540 | Msa1335690 | 0.817829 | 2.691897e-52 | -8.615850e-47 |
| Msa1127590 | Msa1335690 | 0.811032 | 8.574442e-51 | -8.615850e-47 |
| Msa1154490 | Msa1335690 | 0.802202 | 6.273431e-49 | -8.615850e-47 |
| Msa1168550 | Msa1335690 | 0.824419 | 8.154421e-54 | -8.615850e-47 |
| Msa1168590 | Msa1335690 | 0.822135 | 2.784462e-53 | -8.615850e-47 |
| Msa1169720 | Msa1335690 | 0.816113 | 6.536229e-52 | -8.615850e-47 |
| Msa1188560 | Msa1335690 | 0.805244 | 1.465695e-49 | -8.615850e-47 |
| Msa1211340 | Msa1335690 | 0.836593 | 8.543848e-57 | -8.615850e-47 |
| Msa1214320 | Msa1335690 | 0.810113 | 1.354836e-50 | -8.615850e-47 |
| Msa0491000 | Msa1335690 | 0.810608 | 1.059402e-50 | -8.615850e-47 |
| Msa0510290 | Msa1335690 | 0.805074 | 1.590876e-49 | -8.615850e-47 |
| Msa0518030 | Msa1335690 | 0.810309 | 1.228910e-50 | -8.615850e-47 |
| Msa0518960 | Msa1335690 | 0.805619 | 1.222988e-49 | -8.615850e-47 |
| Msa0527190 | Msa1335690 | 0.834613 | 2.708505e-56 | -8.615850e-47 |
| Msa0531250 | Msa1335690 | 0.814630 | 1.397393e-51 | -8.615850e-47 |
| Msa0547990 | Msa1335690 | 0.811561 | 6.582679e-51 | -8.615850e-47 |
| Msa0556010 | Msa1335690 | 0.802974 | 4.347779e-49 | -8.615850e-47 |
| Msa0583500 | Msa1335690 | 0.823656 | 1.231749e-53 | -8.615850e-47 |
| Msa0597770 | Msa1335690 | 0.828405 | 9.155866e-55 | -8.615850e-47 |
| Msa0905590 | Msa1335690 | 0.812301 | 4.542998e-51 | -8.615850e-47 |
| Msa0937430 | Msa1335690 | 0.821509 | 3.887011e-53 | -8.615850e-47 |
| Msa0969330 | Msa1335690 | 0.802623 | 5.138427e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1335690 | MtrunA17_Chr3g0128831 | 87.798 | 336 | 6 | 1 | 1 | 301 | 1 | 336 | 0.0 | 594 |
| Msa1335690 | MtrunA17_Chr6g0451081 | 64.939 | 328 | 75 | 3 | 14 | 301 | 13 | 340 | 8.91e-147 | 431 |
| Msa1335690 | MtrunA17_Chr5g0413721 | 58.017 | 343 | 101 | 6 | 1 | 301 | 1 | 342 | 2.96e-130 | 391 |
| Msa1335690 | MtrunA17_Chr5g0430731 | 54.037 | 322 | 113 | 4 | 14 | 301 | 18 | 338 | 2.85e-115 | 349 |
| Msa1335690 | MtrunA17_Chr6g0461871 | 51.807 | 332 | 120 | 4 | 4 | 301 | 12 | 337 | 3.99e-106 | 326 |
| Msa1335690 | MtrunA17_Chr4g0055471 | 45.672 | 335 | 144 | 5 | 1 | 301 | 42 | 372 | 1.50e-94 | 296 |
| Msa1335690 | MtrunA17_Chr8g0387661 | 43.881 | 335 | 152 | 4 | 2 | 301 | 7 | 340 | 3.66e-93 | 292 |
| Msa1335690 | MtrunA17_Chr7g0268981 | 44.000 | 325 | 142 | 4 | 13 | 301 | 58 | 378 | 6.72e-85 | 270 |
| Msa1335690 | MtrunA17_Chr2g0297291 | 44.083 | 338 | 146 | 6 | 1 | 301 | 28 | 359 | 7.26e-84 | 268 |
| Msa1335690 | MtrunA17_Chr4g0052401 | 44.675 | 338 | 144 | 6 | 1 | 301 | 28 | 359 | 1.30e-83 | 267 |
| Msa1335690 | MtrunA17_Chr8g0365001 | 47.022 | 319 | 130 | 8 | 18 | 301 | 89 | 403 | 2.65e-82 | 265 |
| Msa1335690 | MtrunA17_Chr2g0297311 | 44.083 | 338 | 146 | 6 | 1 | 301 | 28 | 359 | 1.26e-80 | 251 |
| Msa1335690 | MtrunA17_Chr2g0279131 | 45.397 | 315 | 134 | 5 | 22 | 301 | 101 | 412 | 3.36e-80 | 259 |
| Msa1335690 | MtrunA17_Chr8g0380281 | 43.114 | 334 | 153 | 7 | 1 | 301 | 13 | 342 | 3.60e-77 | 250 |
| Msa1335690 | MtrunA17_Chr8g0393241 | 40.244 | 328 | 140 | 4 | 13 | 287 | 12 | 336 | 1.09e-73 | 241 |
| Msa1335690 | MtrunA17_Chr8g0375411 | 43.548 | 310 | 142 | 7 | 19 | 301 | 26 | 329 | 1.79e-70 | 231 |
| Msa1335690 | MtrunA17_Chr5g0429991 | 43.810 | 315 | 139 | 6 | 22 | 301 | 101 | 412 | 9.62e-68 | 226 |
| Msa1335690 | MtrunA17_Chr5g0430551 | 51.235 | 162 | 69 | 2 | 3 | 163 | 1 | 153 | 1.06e-51 | 168 |
| Msa1335690 | MtrunA17_Chr8g0365041 | 48.864 | 176 | 83 | 3 | 12 | 183 | 53 | 225 | 4.82e-47 | 158 |
| Msa1335690 | MtrunA17_Chr8g0344581 | 55.932 | 118 | 49 | 1 | 22 | 139 | 4 | 118 | 3.80e-42 | 142 |
| Msa1335690 | MtrunA17_Chr5g0430571 | 55.725 | 131 | 35 | 1 | 158 | 288 | 17 | 124 | 4.33e-42 | 152 |
| Msa1335690 | MtrunA17_Chr8g0344551 | 55.085 | 118 | 50 | 1 | 22 | 139 | 4 | 118 | 1.23e-41 | 141 |
| Msa1335690 | MtrunA17_Chr8g0365031 | 47.586 | 145 | 75 | 1 | 157 | 301 | 37 | 180 | 6.82e-41 | 149 |
| Msa1335690 | MtrunA17_Chr8g0344561 | 51.163 | 129 | 63 | 0 | 158 | 286 | 28 | 156 | 8.19e-40 | 146 |
| Msa1335690 | MtrunA17_Chr8g0344591 | 37.209 | 129 | 61 | 2 | 158 | 286 | 28 | 136 | 1.63e-19 | 88.2 |
| Msa1335690 | MtrunA17_Chr5g0413751 | 50.000 | 86 | 37 | 2 | 84 | 163 | 47 | 132 | 6.85e-16 | 76.6 |
| Msa1335690 | MtrunA17_Chr1g0159401 | 41.667 | 96 | 49 | 2 | 158 | 253 | 32 | 120 | 1.55e-14 | 70.1 |
| Msa1335690 | MtrunA17_Chr6g0467721 | 40.426 | 141 | 78 | 4 | 158 | 295 | 23 | 160 | 2.56e-13 | 68.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1335690 | AT2G40540.1 | 71.217 | 337 | 61 | 4 | 1 | 301 | 1 | 337 | 5.44e-164 | 476 |
| Msa1335690 | AT2G40540.5 | 71.217 | 337 | 61 | 4 | 1 | 301 | 1 | 337 | 5.44e-164 | 476 |
| Msa1335690 | AT2G40540.4 | 71.217 | 337 | 61 | 4 | 1 | 301 | 1 | 337 | 5.44e-164 | 476 |
| Msa1335690 | AT2G40540.2 | 71.217 | 337 | 61 | 4 | 1 | 301 | 1 | 337 | 5.44e-164 | 476 |
| Msa1335690 | AT2G40540.3 | 71.217 | 337 | 61 | 4 | 1 | 301 | 1 | 337 | 5.44e-164 | 476 |
| Msa1335690 | AT5G14880.1 | 63.158 | 342 | 84 | 6 | 1 | 301 | 1 | 341 | 2.11e-140 | 415 |
| Msa1335690 | AT1G70300.1 | 60.058 | 343 | 93 | 5 | 1 | 301 | 1 | 341 | 3.51e-139 | 412 |
| Msa1335690 | AT2G30070.1 | 51.863 | 322 | 120 | 3 | 14 | 301 | 18 | 338 | 1.65e-110 | 336 |
| Msa1335690 | AT4G23640.1 | 50.926 | 324 | 124 | 3 | 12 | 301 | 2 | 324 | 1.45e-102 | 317 |
| Msa1335690 | AT3G02050.1 | 49.851 | 335 | 130 | 4 | 4 | 301 | 5 | 338 | 1.79e-97 | 304 |
| Msa1335690 | AT4G13420.1 | 44.578 | 332 | 147 | 7 | 3 | 301 | 38 | 365 | 1.38e-88 | 280 |
| Msa1335690 | AT1G60160.1 | 46.057 | 317 | 133 | 6 | 20 | 301 | 87 | 400 | 2.55e-84 | 270 |
| Msa1335690 | AT1G31120.1 | 46.154 | 338 | 139 | 6 | 1 | 301 | 35 | 366 | 6.69e-81 | 260 |
| Msa1335690 | AT2G35060.4 | 45.858 | 338 | 140 | 6 | 1 | 301 | 36 | 367 | 8.08e-79 | 255 |
| Msa1335690 | AT2G35060.1 | 45.858 | 338 | 140 | 6 | 1 | 301 | 36 | 367 | 8.08e-79 | 255 |
| Msa1335690 | AT2G35060.3 | 45.858 | 338 | 140 | 6 | 1 | 301 | 36 | 367 | 8.08e-79 | 255 |
| Msa1335690 | AT2G35060.2 | 45.723 | 339 | 140 | 7 | 1 | 301 | 36 | 368 | 4.76e-77 | 250 |
| Msa1335690 | AT4G19960.2 | 46.452 | 310 | 128 | 4 | 26 | 301 | 62 | 367 | 1.71e-76 | 249 |
| Msa1335690 | AT4G19960.1 | 46.452 | 310 | 128 | 4 | 26 | 301 | 62 | 367 | 2.17e-76 | 249 |
| Msa1335690 | AT4G19960.3 | 41.964 | 336 | 131 | 5 | 26 | 301 | 62 | 393 | 6.22e-70 | 232 |
| Msa1335690 | AT4G33530.1 | 42.587 | 317 | 140 | 6 | 22 | 301 | 106 | 417 | 3.84e-68 | 227 |
| Msa1335690 | AT5G09400.1 | 41.493 | 335 | 145 | 7 | 2 | 301 | 98 | 416 | 2.25e-66 | 223 |
| Msa1335690 | AT2G30070.2 | 45.413 | 218 | 84 | 3 | 118 | 301 | 2 | 218 | 7.43e-58 | 195 |
| Msa1335690 | AT4G19960.4 | 52.083 | 144 | 68 | 1 | 158 | 301 | 4 | 146 | 9.25e-42 | 152 |
| Msa1335690 | AT4G33530.2 | 44.595 | 148 | 81 | 1 | 154 | 301 | 43 | 189 | 1.97e-33 | 129 |
Find 64 sgRNAs with CRISPR-Local
Find 303 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCAGATTGCATTCACCTTTC+TGG | 0.122911 | tig0000667:-230 | Msa1335690:intron |
| TGCACTTATATTGGCATATA+TGG | 0.141485 | tig0000667:-200 | Msa1335690:CDS |
| GAGACTAATGAAGAGATTTA+TGG | 0.198641 | tig0000667:-2007 | Msa1335690:CDS |
| TCTTGGTCATTTCAATTATA+TGG | 0.206069 | tig0000667:-362 | Msa1335690:CDS |
| TTTCAATTATATGGCCATTC+AGG | 0.245101 | tig0000667:-353 | Msa1335690:intron |
| CTCTTTATTCATTGATTTGT+AGG | 0.245636 | tig0000667:-1784 | Msa1335690:CDS |
| CAGAGTCTTGGTGTTGTATA+TGG | 0.249792 | tig0000667:-2094 | Msa1335690:CDS |
| CTTCTGATTGTGGTTCTTCT+TGG | 0.250106 | tig0000667:-1623 | Msa1335690:intron |
| GGTATATCCTGCACTTATAT+TGG | 0.277914 | tig0000667:-209 | Msa1335690:CDS |
| AGCTACTATGTCTCCGTTCC+AGG | 0.305722 | tig0000667:-130 | None:intergenic |
| TTCTTAGAGCTGATGATAAT+GGG | 0.314821 | tig0000667:-1922 | Msa1335690:CDS |
| GGAATATTACTTTGTATAAC+AGG | 0.322568 | tig0000667:-843 | Msa1335690:intron |
| GAAGCTATGTTTGCTGATCT+TGG | 0.331982 | tig0000667:-379 | Msa1335690:CDS |
| TCCCATCACTTGCTTCATAC+TGG | 0.360782 | tig0000667:-1072 | Msa1335690:CDS |
| AGTAGCCATGTCAGCACAAT+TGG | 0.368461 | tig0000667:+993 | Msa1335690:intergenic |
| GTTCTTAGAGCTGATGATAA+TGG | 0.369896 | tig0000667:-1923 | Msa1335690:CDS |
| GATAAGTGGATGGCTGTCTT+TGG | 0.370262 | tig0000667:-868 | Msa1335690:CDS |
| TTCAAGATTTGACAGAGATA+TGG | 0.376550 | tig0000667:-2520 | None:intergenic |
| AATTTAGAATACTCTTTCTC+TGG | 0.377126 | tig0000667:+1686 | Msa1335690:intergenic |
| TCATCAGCATGCTGTCTGTT+TGG | 0.393866 | tig0000667:+1740 | Msa1335690:intergenic |
| TTCTTTCAAGACAAAACAAA+TGG | 0.404676 | tig0000667:-2297 | Msa1335690:exon |
| TTGTTTGCACTTCAACACTA+TGG | 0.414430 | tig0000667:-1044 | Msa1335690:CDS |
| ATTGAGTGGCTGGAATTGTT+TGG | 0.419526 | tig0000667:-2366 | Msa1335690:five_prime_UTR |
| TTGGAAGACTATTCTGCTAC+TGG | 0.426942 | tig0000667:-2122 | Msa1335690:CDS |
| AGCACTTTCTTCATATAAGA+TGG | 0.430100 | tig0000667:-1717 | Msa1335690:CDS |
| ATAAGTGGATGGCTGTCTTT+GGG | 0.443805 | tig0000667:-867 | Msa1335690:CDS |
| CAGGATCATTATTGAGTGGC+TGG | 0.457096 | tig0000667:-2376 | Msa1335690:five_prime_UTR |
| AAACAAATGGATCTTGAACC+TGG | 0.462548 | tig0000667:-2284 | Msa1335690:exon |
| CTCTGAAACTGAACTGAGAC+AGG | 0.478153 | tig0000667:-2406 | Msa1335690:five_prime_UTR |
| GCACTTATATTGGCATATAT+GGG | 0.478501 | tig0000667:-199 | Msa1335690:CDS |
| AAGAACTTGAACATATAATA+CGG | 0.479223 | tig0000667:+903 | Msa1335690:intergenic |
| TTGCTCCAATTGTGCTGACA+TGG | 0.480391 | tig0000667:-998 | Msa1335690:CDS |
| GCATACTGCTCTTCTGATTG+TGG | 0.480604 | tig0000667:-1633 | Msa1335690:CDS |
| TTGAACCTGGGAGGAAGTGT+TGG | 0.499293 | tig0000667:-2271 | Msa1335690:CDS |
| GCGTATATAATATATTCAAA+TGG | 0.503557 | tig0000667:-953 | Msa1335690:CDS |
| CTACTGGCTTACCAGAGTCT+TGG | 0.504452 | tig0000667:-2106 | Msa1335690:CDS |
| CTACTGTGCATTAGCACACT+TGG | 0.504767 | tig0000667:-975 | Msa1335690:CDS |
| CACTATGGTACACATAAGGT+TGG | 0.512279 | tig0000667:-1029 | Msa1335690:CDS |
| CTGTCTCAGTTCAGTTTCAG+AGG | 0.514798 | tig0000667:+2407 | Msa1335690:intergenic |
| TGAACCTGGGAGGAAGTGTT+GGG | 0.514870 | tig0000667:-2270 | Msa1335690:CDS |
| TCAACACTATGGTACACATA+AGG | 0.544559 | tig0000667:-1033 | Msa1335690:CDS |
| GAAGTGTTGGGATAGTTCAA+AGG | 0.545829 | tig0000667:-2258 | Msa1335690:intron |
| CATATACAACACCAAGACTC+TGG | 0.553981 | tig0000667:+2095 | Msa1335690:intergenic |
| CTATCCCAACACTTCCTCCC+AGG | 0.555040 | tig0000667:+2266 | Msa1335690:intergenic |
| ATATATGCCAATATAAGTGC+AGG | 0.555536 | tig0000667:+202 | Msa1335690:intergenic |
| TTAGAATACTCTTTCTCTGG+AGG | 0.560946 | tig0000667:+1689 | Msa1335690:intergenic |
| ACTATGGTACACATAAGGTT+GGG | 0.561821 | tig0000667:-1028 | Msa1335690:CDS |
| AACAAATGGATCTTGAACCT+GGG | 0.562805 | tig0000667:-2283 | Msa1335690:exon |
| AACTGAGACAGGAAACAGAC+AGG | 0.563452 | tig0000667:-2395 | Msa1335690:five_prime_UTR |
| ACCAGTATGAAGCAAGTGAT+GGG | 0.573753 | tig0000667:+1071 | Msa1335690:intergenic |
| CACCAGTATGAAGCAAGTGA+TGG | 0.581489 | tig0000667:+1070 | Msa1335690:intergenic |
| ACAAACACATATTTGAAGAG+TGG | 0.592621 | tig0000667:+1947 | Msa1335690:intergenic |
| AAAAGACAAGGATAAGTGGA+TGG | 0.612497 | tig0000667:-878 | Msa1335690:CDS |
| AGAGCTGATGATAATGGGGA+AGG | 0.616664 | tig0000667:-1917 | Msa1335690:intron |
| ATGGCAATGAATACCTGGAA+CGG | 0.617377 | tig0000667:+117 | Msa1335690:intergenic |
| AGTGGATGGCTGTCTTTGGG+TGG | 0.633140 | tig0000667:-864 | Msa1335690:CDS |
| ACTTTCTTCATATAAGATGG+AGG | 0.634857 | tig0000667:-1714 | Msa1335690:CDS |
| GAAAGAGCTTTATATACATG+CGG | 0.639602 | tig0000667:+927 | Msa1335690:intergenic |
| TCTTAGAGCTGATGATAATG+GGG | 0.641130 | tig0000667:-1921 | Msa1335690:CDS |
| AAGTGCAGGATATACCAGAA+AGG | 0.642926 | tig0000667:+216 | Msa1335690:intergenic |
| TGAACTCAGCAACAAGAGTG+AGG | 0.647135 | tig0000667:+2333 | Msa1335690:intergenic |
| CAGACAGGATCATTATTGAG+TGG | 0.669515 | tig0000667:-2380 | Msa1335690:five_prime_UTR |
| AAATGGATCTTGAACCTGGG+AGG | 0.693417 | tig0000667:-2280 | Msa1335690:CDS |
| AATGAAACTCACATATCACA+TGG | 0.701225 | tig0000667:+2494 | Msa1335680:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | GAATATTTATAGATAGATAT+AGG | + | tig0000667:1912-1931 | Msa1335690:intergenic | 15.0% |
| !! | GAATATTTATAGATAGATAT+AGG | + | tig0000667:1912-1931 | Msa1335690:intergenic | 15.0% |
| !! | TGAATATTTGTGAAATGAAA+TGG | - | tig0000667:449-468 | Msa1335690:intron | 20.0% |
| !! | TGTAAAACATTGTGAAATAA+GGG | + | tig0000667:1107-1126 | Msa1335690:intergenic | 20.0% |
| !! | TTGTAAAACATTGTGAAATA+AGG | + | tig0000667:1108-1127 | Msa1335690:intergenic | 20.0% |
| !! | ATGTTATATTGAAATATCTG+AGG | + | tig0000667:1428-1447 | Msa1335690:intergenic | 20.0% |
| !! | GCGTATATAATATATTCAAA+TGG | - | tig0000667:1689-1708 | Msa1335690:CDS | 20.0% |
| !! | AAGAACTTGAACATATAATA+CGG | + | tig0000667:1742-1761 | Msa1335690:intergenic | 20.0% |
| !! | TTTGGATTTAAAGAATAAGT+AGG | + | tig0000667:1880-1899 | Msa1335690:intergenic | 20.0% |
| !!! | TATAGATAGATATAGGTTTT+GGG | + | tig0000667:1905-1924 | Msa1335690:intergenic | 20.0% |
| !!! | TTATAGATAGATATAGGTTT+TGG | + | tig0000667:1906-1925 | Msa1335690:intergenic | 20.0% |
| !! | ACTATGATTTAATTAAGACA+TGG | - | tig0000667:2011-2030 | Msa1335690:CDS | 20.0% |
| !! | ATATATACTTGAACAAATTC+TGG | - | tig0000667:2048-2067 | Msa1335690:CDS | 20.0% |
| !! | TACTAAATTTGACACTTTAA+GGG | + | tig0000667:2099-2118 | Msa1335690:intergenic | 20.0% |
| !! | ATACTAAATTTGACACTTTA+AGG | + | tig0000667:2100-2119 | Msa1335690:intergenic | 20.0% |
| !! | TGAATATTTGTGAAATGAAA+TGG | - | tig0000667:449-468 | Msa1335690:intron | 20.0% |
| !! | TGTAAAACATTGTGAAATAA+GGG | + | tig0000667:1107-1126 | Msa1335690:intergenic | 20.0% |
| !! | TTGTAAAACATTGTGAAATA+AGG | + | tig0000667:1108-1127 | Msa1335690:intergenic | 20.0% |
| !! | ATGTTATATTGAAATATCTG+AGG | + | tig0000667:1428-1447 | Msa1335690:intergenic | 20.0% |
| !! | GCGTATATAATATATTCAAA+TGG | - | tig0000667:1689-1708 | Msa1335690:CDS | 20.0% |
| !! | AAGAACTTGAACATATAATA+CGG | + | tig0000667:1742-1761 | Msa1335690:intergenic | 20.0% |
| !! | TTTGGATTTAAAGAATAAGT+AGG | + | tig0000667:1880-1899 | Msa1335690:intergenic | 20.0% |
| !!! | TATAGATAGATATAGGTTTT+GGG | + | tig0000667:1905-1924 | Msa1335690:intergenic | 20.0% |
| !!! | TTATAGATAGATATAGGTTT+TGG | + | tig0000667:1906-1925 | Msa1335690:intergenic | 20.0% |
| !! | ACTATGATTTAATTAAGACA+TGG | - | tig0000667:2011-2030 | Msa1335690:CDS | 20.0% |
| !! | ATATATACTTGAACAAATTC+TGG | - | tig0000667:2048-2067 | Msa1335690:CDS | 20.0% |
| !! | TACTAAATTTGACACTTTAA+GGG | + | tig0000667:2099-2118 | Msa1335690:intergenic | 20.0% |
| !! | ATACTAAATTTGACACTTTA+AGG | + | tig0000667:2100-2119 | Msa1335690:intergenic | 20.0% |
| ! | TTCTTTCAAGACAAAACAAA+TGG | - | tig0000667:345-364 | Msa1335690:intron | 25.0% |
| ! | AATAAAAACCCACATTAGAA+AGG | + | tig0000667:423-442 | Msa1335690:intergenic | 25.0% |
| ! | TATTTGTGAAATGAAATGGA+TGG | - | tig0000667:453-472 | Msa1335690:intron | 25.0% |
| !!! | CTCTTTATTCATTGATTTGT+AGG | - | tig0000667:858-877 | Msa1335690:CDS | 25.0% |
| !! | AATTTAGAATACTCTTTCTC+TGG | + | tig0000667:959-978 | Msa1335690:intergenic | 25.0% |
| ! | TAAAACATTGTGAAATAAGG+GGG | + | tig0000667:1105-1124 | Msa1335690:intergenic | 25.0% |
| ! | GTAAAACATTGTGAAATAAG+GGG | + | tig0000667:1106-1125 | Msa1335690:intergenic | 25.0% |
| ! | TTCAACTAGTTAATGAACTT+CGG | - | tig0000667:1145-1164 | Msa1335690:intron | 25.0% |
| ! | GTGGATGTATTTCAATTAAA+TGG | - | tig0000667:1467-1486 | Msa1335690:intron | 25.0% |
| ! | ATCTGCAAACAAAAATCAAT+AGG | + | tig0000667:1542-1561 | Msa1335690:intergenic | 25.0% |
| ! | GGAATATTACTTTGTATAAC+AGG | - | tig0000667:1799-1818 | Msa1335690:CDS | 25.0% |
| !! | ATAGATAGATATAGGTTTTG+GGG | + | tig0000667:1904-1923 | Msa1335690:intergenic | 25.0% |
| ! | TCTTGGTCATTTCAATTATA+TGG | - | tig0000667:2280-2299 | Msa1335690:CDS | 25.0% |
| ! | TTCTTTCAAGACAAAACAAA+TGG | - | tig0000667:345-364 | Msa1335690:intron | 25.0% |
| ! | AATAAAAACCCACATTAGAA+AGG | + | tig0000667:423-442 | Msa1335690:intergenic | 25.0% |
| ! | TATTTGTGAAATGAAATGGA+TGG | - | tig0000667:453-472 | Msa1335690:intron | 25.0% |
| !!! | CTCTTTATTCATTGATTTGT+AGG | - | tig0000667:858-877 | Msa1335690:CDS | 25.0% |
| !! | AATTTAGAATACTCTTTCTC+TGG | + | tig0000667:959-978 | Msa1335690:intergenic | 25.0% |
| ! | TAAAACATTGTGAAATAAGG+GGG | + | tig0000667:1105-1124 | Msa1335690:intergenic | 25.0% |
| ! | GTAAAACATTGTGAAATAAG+GGG | + | tig0000667:1106-1125 | Msa1335690:intergenic | 25.0% |
| ! | TTCAACTAGTTAATGAACTT+CGG | - | tig0000667:1145-1164 | Msa1335690:intron | 25.0% |
| ! | GTGGATGTATTTCAATTAAA+TGG | - | tig0000667:1467-1486 | Msa1335690:intron | 25.0% |
| ! | ATCTGCAAACAAAAATCAAT+AGG | + | tig0000667:1542-1561 | Msa1335690:intergenic | 25.0% |
| ! | GGAATATTACTTTGTATAAC+AGG | - | tig0000667:1799-1818 | Msa1335690:CDS | 25.0% |
| !! | ATAGATAGATATAGGTTTTG+GGG | + | tig0000667:1904-1923 | Msa1335690:intergenic | 25.0% |
| ! | TCTTGGTCATTTCAATTATA+TGG | - | tig0000667:2280-2299 | Msa1335690:CDS | 25.0% |
| AATGAAACTCACATATCACA+TGG | + | tig0000667:151-170 | Msa0411470:intergenic | 30.0% | |
| ! | GAAAAACATTCACACTCTTT+TGG | + | tig0000667:198-217 | Msa0411470:intergenic | 30.0% |
| ! | TTGATTTTCAGAGAGATTCT+TGG | - | tig0000667:501-520 | Msa1335690:intron | 30.0% |
| GTGCTTGTAAAAACATACAA+TGG | + | tig0000667:590-609 | Msa1335690:intergenic | 30.0% | |
| GAGACTAATGAAGAGATTTA+TGG | - | tig0000667:635-654 | Msa1335690:intron | 30.0% | |
| ACAAACACATATTTGAAGAG+TGG | + | tig0000667:698-717 | Msa1335690:intergenic | 30.0% | |
| TTCTTAGAGCTGATGATAAT+GGG | - | tig0000667:720-739 | Msa1335690:intron | 30.0% | |
| ! | TGATGATTTTCATGTATGTG+TGG | - | tig0000667:815-834 | Msa1335690:intron | 30.0% |
| AGCACTTTCTTCATATAAGA+TGG | - | tig0000667:925-944 | Msa1335690:CDS | 30.0% | |
| ACTTTCTTCATATAAGATGG+AGG | - | tig0000667:928-947 | Msa1335690:CDS | 30.0% | |
| TTGGTACTTGTATGGTAATT+GGG | - | tig0000667:1038-1057 | Msa1335690:CDS | 30.0% | |
| TAGTTAATGAACTTCGGTTT+AGG | - | tig0000667:1151-1170 | Msa1335690:intron | 30.0% | |
| ATATGAGTTCGAACTGTAAT+TGG | - | tig0000667:1191-1210 | Msa1335690:intron | 30.0% | |
| TTTATTAACCCTTCGATTTC+CGG | + | tig0000667:1271-1290 | Msa1335690:intergenic | 30.0% | |
| ! | GCAAGATTTCTTCATTGTTT+TGG | - | tig0000667:1501-1520 | Msa1335690:intron | 30.0% |
| ! | GAAAGAGCTTTATATACATG+CGG | + | tig0000667:1718-1737 | Msa1335690:intergenic | 30.0% |
| TCAAGTTCTTGAAAAAGACA+AGG | - | tig0000667:1752-1771 | Msa1335690:CDS | 30.0% | |
| TTGAAAAAGACAAGGATAAG+TGG | - | tig0000667:1760-1779 | Msa1335690:CDS | 30.0% | |
| AGGGAAATAACGATAGATAA+AGG | + | tig0000667:2080-2099 | Msa1335690:intergenic | 30.0% | |
| !! | GCTCAAATCTATTGATTTGA+GGG | + | tig0000667:2154-2173 | Msa1335690:intergenic | 30.0% |
| !! | AGCTCAAATCTATTGATTTG+AGG | + | tig0000667:2155-2174 | Msa1335690:intergenic | 30.0% |
| AATAGATTTGAGCTTTCACA+TGG | - | tig0000667:2161-2180 | Msa1335690:intron | 30.0% | |
| TTTCAATTATATGGCCATTC+AGG | - | tig0000667:2289-2308 | Msa1335690:exon | 30.0% | |
| !!! | AGTATTTTAACCAACCTGAA+TGG | + | tig0000667:2306-2325 | Msa1335690:intergenic | 30.0% |
| ATATATGCCAATATAAGTGC+AGG | + | tig0000667:2443-2462 | Msa1335690:intergenic | 30.0% | |
| TGCACTTATATTGGCATATA+TGG | - | tig0000667:2442-2461 | Msa1335690:five_prime_UTR | 30.0% | |
| GCACTTATATTGGCATATAT+GGG | - | tig0000667:2443-2462 | Msa1335690:five_prime_UTR | 30.0% | |
| AATGAAACTCACATATCACA+TGG | + | tig0000667:151-170 | Msa1335690:intergenic | 30.0% | |
| ! | GAAAAACATTCACACTCTTT+TGG | + | tig0000667:198-217 | Msa1335690:intergenic | 30.0% |
| ! | TTGATTTTCAGAGAGATTCT+TGG | - | tig0000667:501-520 | Msa1335690:intron | 30.0% |
| GTGCTTGTAAAAACATACAA+TGG | + | tig0000667:590-609 | Msa1335690:intergenic | 30.0% | |
| GAGACTAATGAAGAGATTTA+TGG | - | tig0000667:635-654 | Msa1335690:intron | 30.0% | |
| ACAAACACATATTTGAAGAG+TGG | + | tig0000667:698-717 | Msa1335690:intergenic | 30.0% | |
| TTCTTAGAGCTGATGATAAT+GGG | - | tig0000667:720-739 | Msa1335690:intron | 30.0% | |
| ! | TGATGATTTTCATGTATGTG+TGG | - | tig0000667:815-834 | Msa1335690:intron | 30.0% |
| AGCACTTTCTTCATATAAGA+TGG | - | tig0000667:925-944 | Msa1335690:CDS | 30.0% | |
| ACTTTCTTCATATAAGATGG+AGG | - | tig0000667:928-947 | Msa1335690:CDS | 30.0% | |
| TTGGTACTTGTATGGTAATT+GGG | - | tig0000667:1038-1057 | Msa1335690:CDS | 30.0% | |
| TAGTTAATGAACTTCGGTTT+AGG | - | tig0000667:1151-1170 | Msa1335690:intron | 30.0% | |
| ATATGAGTTCGAACTGTAAT+TGG | - | tig0000667:1191-1210 | Msa1335690:intron | 30.0% | |
| TTTATTAACCCTTCGATTTC+CGG | + | tig0000667:1271-1290 | Msa1335690:intergenic | 30.0% | |
| ! | GCAAGATTTCTTCATTGTTT+TGG | - | tig0000667:1501-1520 | Msa1335690:intron | 30.0% |
| ! | GAAAGAGCTTTATATACATG+CGG | + | tig0000667:1718-1737 | Msa1335690:intergenic | 30.0% |
| TCAAGTTCTTGAAAAAGACA+AGG | - | tig0000667:1752-1771 | Msa1335690:CDS | 30.0% | |
| TTGAAAAAGACAAGGATAAG+TGG | - | tig0000667:1760-1779 | Msa1335690:CDS | 30.0% | |
| AGGGAAATAACGATAGATAA+AGG | + | tig0000667:2080-2099 | Msa1335690:intergenic | 30.0% | |
| !! | GCTCAAATCTATTGATTTGA+GGG | + | tig0000667:2154-2173 | Msa1335690:intergenic | 30.0% |
| !! | AGCTCAAATCTATTGATTTG+AGG | + | tig0000667:2155-2174 | Msa1335690:intergenic | 30.0% |
| AATAGATTTGAGCTTTCACA+TGG | - | tig0000667:2161-2180 | Msa1335690:intron | 30.0% | |
| TTTCAATTATATGGCCATTC+AGG | - | tig0000667:2289-2308 | Msa1335690:exon | 30.0% | |
| !!! | AGTATTTTAACCAACCTGAA+TGG | + | tig0000667:2306-2325 | Msa1335690:intergenic | 30.0% |
| ATATATGCCAATATAAGTGC+AGG | + | tig0000667:2443-2462 | Msa1335690:intergenic | 30.0% | |
| TGCACTTATATTGGCATATA+TGG | - | tig0000667:2442-2461 | Msa1335690:five_prime_UTR | 30.0% | |
| GCACTTATATTGGCATATAT+GGG | - | tig0000667:2443-2462 | Msa1335690:five_prime_UTR | 30.0% | |
| !!! | CATTCACACTCTTTTGGTTT+TGG | + | tig0000667:192-211 | Msa0411470:intergenic | 35.0% |
| AAACAAATGGATCTTGAACC+TGG | - | tig0000667:358-377 | Msa1335690:CDS | 35.0% | |
| AACAAATGGATCTTGAACCT+GGG | - | tig0000667:359-378 | Msa1335690:CDS | 35.0% | |
| TGCATTTCACCTTTCTAATG+TGG | - | tig0000667:411-430 | Msa1335690:intron | 35.0% | |
| GCATTTCACCTTTCTAATGT+GGG | - | tig0000667:412-431 | Msa1335690:intron | 35.0% | |
| !!! | GCACACTTTCTTTTGTTTTC+TGG | - | tig0000667:657-676 | Msa1335690:intron | 35.0% |
| GTTCTTAGAGCTGATGATAA+TGG | - | tig0000667:719-738 | Msa1335690:intron | 35.0% | |
| ! | TCTTAGAGCTGATGATAATG+GGG | - | tig0000667:721-740 | Msa1335690:intron | 35.0% |
| !! | TGATAATGGGGAAGGTAATA+AGG | - | tig0000667:733-752 | Msa1335690:intron | 35.0% |
| TCATCATGAGCAAAAGAAAC+AGG | + | tig0000667:801-820 | Msa1335690:intergenic | 35.0% | |
| TTAGAATACTCTTTCTCTGG+AGG | + | tig0000667:956-975 | Msa1335690:intergenic | 35.0% | |
| CTTGGTACTTGTATGGTAAT+TGG | - | tig0000667:1037-1056 | Msa1335690:CDS | 35.0% | |
| TGGTACTTGTATGGTAATTG+GGG | - | tig0000667:1039-1058 | Msa1335690:CDS | 35.0% | |
| TGTTCAGACTTTACTTACTC+CGG | - | tig0000667:1223-1242 | Msa1335690:intron | 35.0% | |
| TTTACTTACTCCGGATTACT+GGG | - | tig0000667:1232-1251 | Msa1335690:intron | 35.0% | |
| TTATTAACCCTTCGATTTCC+GGG | + | tig0000667:1270-1289 | Msa1335690:intergenic | 35.0% | |
| ATAAGTGATACTTACACTGG+TGG | + | tig0000667:1400-1419 | Msa1335690:intergenic | 35.0% | |
| GCTATAAGTGATACTTACAC+TGG | + | tig0000667:1403-1422 | Msa1335690:intergenic | 35.0% | |
| GTTAGCAGTGTCTAATTAAG+TGG | - | tig0000667:1448-1467 | Msa1335690:intron | 35.0% | |
| TTGTTTGCACTTCAACACTA+TGG | - | tig0000667:1598-1617 | Msa1335690:intron | 35.0% | |
| TCAACACTATGGTACACATA+AGG | - | tig0000667:1609-1628 | Msa1335690:intron | 35.0% | |
| ACTATGGTACACATAAGGTT+GGG | - | tig0000667:1614-1633 | Msa1335690:intron | 35.0% | |
| AAAAGACAAGGATAAGTGGA+TGG | - | tig0000667:1764-1783 | Msa1335690:CDS | 35.0% | |
| !!! | AGATATAGGTTTTGGGGTTT+TGG | + | tig0000667:1898-1917 | Msa1335690:intergenic | 35.0% |
| GTACTGTTGTAAGAGTAAGA+CGG | - | tig0000667:1939-1958 | Msa1335690:CDS | 35.0% | |
| ! | ACGGAATACTATTTTATCCG+AGG | - | tig0000667:1958-1977 | Msa1335690:CDS | 35.0% |
| ! | AGGTTTCTAAAAAGATGCCT+CGG | + | tig0000667:1978-1997 | Msa1335690:intergenic | 35.0% |
| !! | TCATAGTACTTTTGACTCTG+AGG | + | tig0000667:1998-2017 | Msa1335690:intergenic | 35.0% |
| AAGACATGGAATAAGTTCTC+TGG | - | tig0000667:2025-2044 | Msa1335690:CDS | 35.0% | |
| AATTATATGGCCATTCAGGT+TGG | - | tig0000667:2293-2312 | Msa1335690:exon | 35.0% | |
| TTGTTATGCTCTTATAGACC+TGG | - | tig0000667:2361-2380 | Msa1335690:five_prime_UTR | 35.0% | |
| TGTTATGCTCTTATAGACCT+GGG | - | tig0000667:2362-2381 | Msa1335690:five_prime_UTR | 35.0% | |
| ! | TTGTTAAAGACATTTTGCCC+AGG | + | tig0000667:2382-2401 | Msa1335690:intergenic | 35.0% |
| GGTATATCCTGCACTTATAT+TGG | - | tig0000667:2433-2452 | Msa1335690:five_prime_UTR | 35.0% | |
| !!! | CATTCACACTCTTTTGGTTT+TGG | + | tig0000667:192-211 | Msa1335690:intergenic | 35.0% |
| AAACAAATGGATCTTGAACC+TGG | - | tig0000667:358-377 | Msa1335690:CDS | 35.0% | |
| AACAAATGGATCTTGAACCT+GGG | - | tig0000667:359-378 | Msa1335690:CDS | 35.0% | |
| TGCATTTCACCTTTCTAATG+TGG | - | tig0000667:411-430 | Msa1335690:intron | 35.0% | |
| GCATTTCACCTTTCTAATGT+GGG | - | tig0000667:412-431 | Msa1335690:intron | 35.0% | |
| !!! | GCACACTTTCTTTTGTTTTC+TGG | - | tig0000667:657-676 | Msa1335690:intron | 35.0% |
| GTTCTTAGAGCTGATGATAA+TGG | - | tig0000667:719-738 | Msa1335690:intron | 35.0% | |
| ! | TCTTAGAGCTGATGATAATG+GGG | - | tig0000667:721-740 | Msa1335690:intron | 35.0% |
| !! | TGATAATGGGGAAGGTAATA+AGG | - | tig0000667:733-752 | Msa1335690:intron | 35.0% |
| TCATCATGAGCAAAAGAAAC+AGG | + | tig0000667:801-820 | Msa1335690:intergenic | 35.0% | |
| TTAGAATACTCTTTCTCTGG+AGG | + | tig0000667:956-975 | Msa1335690:intergenic | 35.0% | |
| CTTGGTACTTGTATGGTAAT+TGG | - | tig0000667:1037-1056 | Msa1335690:CDS | 35.0% | |
| TGGTACTTGTATGGTAATTG+GGG | - | tig0000667:1039-1058 | Msa1335690:CDS | 35.0% | |
| TGTTCAGACTTTACTTACTC+CGG | - | tig0000667:1223-1242 | Msa1335690:intron | 35.0% | |
| TTTACTTACTCCGGATTACT+GGG | - | tig0000667:1232-1251 | Msa1335690:intron | 35.0% | |
| TTATTAACCCTTCGATTTCC+GGG | + | tig0000667:1270-1289 | Msa1335690:intergenic | 35.0% | |
| ATAAGTGATACTTACACTGG+TGG | + | tig0000667:1400-1419 | Msa1335690:intergenic | 35.0% | |
| GCTATAAGTGATACTTACAC+TGG | + | tig0000667:1403-1422 | Msa1335690:intergenic | 35.0% | |
| GTTAGCAGTGTCTAATTAAG+TGG | - | tig0000667:1448-1467 | Msa1335690:intron | 35.0% | |
| TTGTTTGCACTTCAACACTA+TGG | - | tig0000667:1598-1617 | Msa1335690:intron | 35.0% | |
| TCAACACTATGGTACACATA+AGG | - | tig0000667:1609-1628 | Msa1335690:intron | 35.0% | |
| ACTATGGTACACATAAGGTT+GGG | - | tig0000667:1614-1633 | Msa1335690:intron | 35.0% | |
| AAAAGACAAGGATAAGTGGA+TGG | - | tig0000667:1764-1783 | Msa1335690:CDS | 35.0% | |
| !!! | AGATATAGGTTTTGGGGTTT+TGG | + | tig0000667:1898-1917 | Msa1335690:intergenic | 35.0% |
| GTACTGTTGTAAGAGTAAGA+CGG | - | tig0000667:1939-1958 | Msa1335690:CDS | 35.0% | |
| ! | ACGGAATACTATTTTATCCG+AGG | - | tig0000667:1958-1977 | Msa1335690:CDS | 35.0% |
| ! | AGGTTTCTAAAAAGATGCCT+CGG | + | tig0000667:1978-1997 | Msa1335690:intergenic | 35.0% |
| !! | TCATAGTACTTTTGACTCTG+AGG | + | tig0000667:1998-2017 | Msa1335690:intergenic | 35.0% |
| AAGACATGGAATAAGTTCTC+TGG | - | tig0000667:2025-2044 | Msa1335690:CDS | 35.0% | |
| AATTATATGGCCATTCAGGT+TGG | - | tig0000667:2293-2312 | Msa1335690:exon | 35.0% | |
| TTGTTATGCTCTTATAGACC+TGG | - | tig0000667:2361-2380 | Msa1335690:five_prime_UTR | 35.0% | |
| TGTTATGCTCTTATAGACCT+GGG | - | tig0000667:2362-2381 | Msa1335690:five_prime_UTR | 35.0% | |
| ! | TTGTTAAAGACATTTTGCCC+AGG | + | tig0000667:2382-2401 | Msa1335690:intergenic | 35.0% |
| GGTATATCCTGCACTTATAT+TGG | - | tig0000667:2433-2452 | Msa1335690:five_prime_UTR | 35.0% | |
| !!! | CACACTCTTTTGGTTTTGGA+TGG | + | tig0000667:188-207 | Msa0411470:intergenic | 40.0% |
| CAGACAGGATCATTATTGAG+TGG | - | tig0000667:262-281 | Msa1335690:intron | 40.0% | |
| ATTGAGTGGCTGGAATTGTT+TGG | - | tig0000667:276-295 | Msa1335690:intron | 40.0% | |
| !! | GAAGTGTTGGGATAGTTCAA+AGG | - | tig0000667:384-403 | Msa1335690:CDS | 40.0% |
| TTGGAAGACTATTCTGCTAC+TGG | - | tig0000667:520-539 | Msa1335690:intron | 40.0% | |
| CATATACAACACCAAGACTC+TGG | + | tig0000667:550-569 | Msa1335690:intergenic | 40.0% | |
| !! | CAGAGTCTTGGTGTTGTATA+TGG | - | tig0000667:548-567 | Msa1335690:intron | 40.0% |
| CTTCTGATTGTGGTTCTTCT+TGG | - | tig0000667:1019-1038 | Msa1335690:CDS | 40.0% | |
| GGTTCTTCTTGGTACTTGTA+TGG | - | tig0000667:1030-1049 | Msa1335690:CDS | 40.0% | |
| ACTTGTATGGTAATTGGGGA+TGG | - | tig0000667:1043-1062 | Msa1335690:CDS | 40.0% | |
| GATAGGATTCTTACCCGAAA+TGG | + | tig0000667:1083-1102 | Msa1335690:intergenic | 40.0% | |
| CATTGTGAAATAAGGGGGAT+AGG | + | tig0000667:1100-1119 | Msa1335690:intergenic | 40.0% | |
| AGTTCGAACTCATATACTCC+TGG | + | tig0000667:1186-1205 | Msa1335690:intergenic | 40.0% | |
| CTTTACTTACTCCGGATTAC+TGG | - | tig0000667:1231-1250 | Msa1335690:intron | 40.0% | |
| TTACTTACTCCGGATTACTG+GGG | - | tig0000667:1233-1252 | Msa1335690:intron | 40.0% | |
| ! | GTAGTTTTCTCAGCAGTATC+TGG | - | tig0000667:1344-1363 | Msa1335690:intron | 40.0% |
| ACCAGTATGAAGCAAGTGAT+GGG | + | tig0000667:1574-1593 | Msa1335690:intergenic | 40.0% | |
| CACTATGGTACACATAAGGT+TGG | - | tig0000667:1613-1632 | Msa1335690:intron | 40.0% | |
| ATAAGTGGATGGCTGTCTTT+GGG | - | tig0000667:1775-1794 | Msa1335690:CDS | 40.0% | |
| GCACACAAAGTCAACACATA+AGG | + | tig0000667:2236-2255 | Msa1335690:intergenic | 40.0% | |
| !! | TATGTGTTGACTTTGTGTGC+AGG | - | tig0000667:2236-2255 | Msa1335690:intron | 40.0% |
| ! | GAAGCTATGTTTGCTGATCT+TGG | - | tig0000667:2263-2282 | Msa1335690:CDS | 40.0% |
| AAGTGCAGGATATACCAGAA+AGG | + | tig0000667:2429-2448 | Msa1335690:intergenic | 40.0% | |
| !!! | CACACTCTTTTGGTTTTGGA+TGG | + | tig0000667:188-207 | Msa1335690:intergenic | 40.0% |
| CAGACAGGATCATTATTGAG+TGG | - | tig0000667:262-281 | Msa1335690:intron | 40.0% | |
| ATTGAGTGGCTGGAATTGTT+TGG | - | tig0000667:276-295 | Msa1335690:intron | 40.0% | |
| !! | GAAGTGTTGGGATAGTTCAA+AGG | - | tig0000667:384-403 | Msa1335690:CDS | 40.0% |
| TTGGAAGACTATTCTGCTAC+TGG | - | tig0000667:520-539 | Msa1335690:intron | 40.0% | |
| CATATACAACACCAAGACTC+TGG | + | tig0000667:550-569 | Msa1335690:intergenic | 40.0% | |
| !! | CAGAGTCTTGGTGTTGTATA+TGG | - | tig0000667:548-567 | Msa1335690:intron | 40.0% |
| CTTCTGATTGTGGTTCTTCT+TGG | - | tig0000667:1019-1038 | Msa1335690:CDS | 40.0% | |
| GGTTCTTCTTGGTACTTGTA+TGG | - | tig0000667:1030-1049 | Msa1335690:CDS | 40.0% | |
| ACTTGTATGGTAATTGGGGA+TGG | - | tig0000667:1043-1062 | Msa1335690:CDS | 40.0% | |
| GATAGGATTCTTACCCGAAA+TGG | + | tig0000667:1083-1102 | Msa1335690:intergenic | 40.0% | |
| CATTGTGAAATAAGGGGGAT+AGG | + | tig0000667:1100-1119 | Msa1335690:intergenic | 40.0% | |
| AGTTCGAACTCATATACTCC+TGG | + | tig0000667:1186-1205 | Msa1335690:intergenic | 40.0% | |
| CTTTACTTACTCCGGATTAC+TGG | - | tig0000667:1231-1250 | Msa1335690:intron | 40.0% | |
| TTACTTACTCCGGATTACTG+GGG | - | tig0000667:1233-1252 | Msa1335690:intron | 40.0% | |
| ! | GTAGTTTTCTCAGCAGTATC+TGG | - | tig0000667:1344-1363 | Msa1335690:intron | 40.0% |
| ACCAGTATGAAGCAAGTGAT+GGG | + | tig0000667:1574-1593 | Msa1335690:intergenic | 40.0% | |
| CACTATGGTACACATAAGGT+TGG | - | tig0000667:1613-1632 | Msa1335690:intron | 40.0% | |
| ATAAGTGGATGGCTGTCTTT+GGG | - | tig0000667:1775-1794 | Msa1335690:CDS | 40.0% | |
| GCACACAAAGTCAACACATA+AGG | + | tig0000667:2236-2255 | Msa1335690:intergenic | 40.0% | |
| !! | TATGTGTTGACTTTGTGTGC+AGG | - | tig0000667:2236-2255 | Msa1335690:intron | 40.0% |
| ! | GAAGCTATGTTTGCTGATCT+TGG | - | tig0000667:2263-2282 | Msa1335690:CDS | 40.0% |
| AAGTGCAGGATATACCAGAA+AGG | + | tig0000667:2429-2448 | Msa1335690:intergenic | 40.0% | |
| CTGTCTCAGTTCAGTTTCAG+AGG | + | tig0000667:238-257 | Msa0411470:intergenic | 45.0% | |
| !! | CTCTGAAACTGAACTGAGAC+AGG | - | tig0000667:236-255 | Msa1335690:intron | 45.0% |
| AACTGAGACAGGAAACAGAC+AGG | - | tig0000667:247-266 | Msa1335690:intron | 45.0% | |
| CAGGATCATTATTGAGTGGC+TGG | - | tig0000667:266-285 | Msa1335690:intron | 45.0% | |
| TGAACTCAGCAACAAGAGTG+AGG | + | tig0000667:312-331 | Msa1335690:intergenic | 45.0% | |
| AAATGGATCTTGAACCTGGG+AGG | - | tig0000667:362-381 | Msa1335690:CDS | 45.0% | |
| !! | AGAGCTGATGATAATGGGGA+AGG | - | tig0000667:725-744 | Msa1335690:intron | 45.0% |
| TCATGTATGTGTGGCTATGC+AGG | - | tig0000667:824-843 | Msa1335690:intron | 45.0% | |
| TCATCAGCATGCTGTCTGTT+TGG | + | tig0000667:905-924 | Msa1335690:intergenic | 45.0% | |
| GCATACTGCTCTTCTGATTG+TGG | - | tig0000667:1009-1028 | Msa1335690:CDS | 45.0% | |
| ATTCTTACCCGAAATGGCTG+GGG | + | tig0000667:1077-1096 | Msa1335690:intergenic | 45.0% | |
| GATTCTTACCCGAAATGGCT+GGG | + | tig0000667:1078-1097 | Msa1335690:intergenic | 45.0% | |
| GTGGTGTTTCTTGGACATGA+TGG | + | tig0000667:1381-1400 | Msa1335690:intergenic | 45.0% | |
| ! | CTTACACTGGTGGTGTTTCT+TGG | + | tig0000667:1390-1409 | Msa1335690:intergenic | 45.0% |
| TCCCATCACTTGCTTCATAC+TGG | - | tig0000667:1570-1589 | Msa1335690:intron | 45.0% | |
| CACCAGTATGAAGCAAGTGA+TGG | + | tig0000667:1575-1594 | Msa1335690:intergenic | 45.0% | |
| ! | TTGCTCCAATTGTGCTGACA+TGG | - | tig0000667:1644-1663 | Msa1335690:CDS | 45.0% |
| AGTAGCCATGTCAGCACAAT+TGG | + | tig0000667:1652-1671 | Msa1335690:intergenic | 45.0% | |
| CTACTGTGCATTAGCACACT+TGG | - | tig0000667:1667-1686 | Msa1335690:CDS | 45.0% | |
| GATAAGTGGATGGCTGTCTT+TGG | - | tig0000667:1774-1793 | Msa1335690:CDS | 45.0% | |
| GCAGATTGCATTCACCTTTC+TGG | - | tig0000667:2412-2431 | Msa1335690:five_prime_UTR | 45.0% | |
| ATGGCTTCCATATCTCTGTC+TGG | + | tig0000667:132-151 | Msa1335690:intergenic | 45.0% | |
| CTGTCTCAGTTCAGTTTCAG+AGG | + | tig0000667:238-257 | Msa1335690:intergenic | 45.0% | |
| !! | CTCTGAAACTGAACTGAGAC+AGG | - | tig0000667:236-255 | Msa1335690:intron | 45.0% |
| AACTGAGACAGGAAACAGAC+AGG | - | tig0000667:247-266 | Msa1335690:intron | 45.0% | |
| CAGGATCATTATTGAGTGGC+TGG | - | tig0000667:266-285 | Msa1335690:intron | 45.0% | |
| TGAACTCAGCAACAAGAGTG+AGG | + | tig0000667:312-331 | Msa1335690:intergenic | 45.0% | |
| AAATGGATCTTGAACCTGGG+AGG | - | tig0000667:362-381 | Msa1335690:CDS | 45.0% | |
| !! | AGAGCTGATGATAATGGGGA+AGG | - | tig0000667:725-744 | Msa1335690:intron | 45.0% |
| TCATGTATGTGTGGCTATGC+AGG | - | tig0000667:824-843 | Msa1335690:intron | 45.0% | |
| TCATCAGCATGCTGTCTGTT+TGG | + | tig0000667:905-924 | Msa1335690:intergenic | 45.0% | |
| GCATACTGCTCTTCTGATTG+TGG | - | tig0000667:1009-1028 | Msa1335690:CDS | 45.0% | |
| ATTCTTACCCGAAATGGCTG+GGG | + | tig0000667:1077-1096 | Msa1335690:intergenic | 45.0% | |
| GATTCTTACCCGAAATGGCT+GGG | + | tig0000667:1078-1097 | Msa1335690:intergenic | 45.0% | |
| GTGGTGTTTCTTGGACATGA+TGG | + | tig0000667:1381-1400 | Msa1335690:intergenic | 45.0% | |
| ! | CTTACACTGGTGGTGTTTCT+TGG | + | tig0000667:1390-1409 | Msa1335690:intergenic | 45.0% |
| TCCCATCACTTGCTTCATAC+TGG | - | tig0000667:1570-1589 | Msa1335690:intron | 45.0% | |
| CACCAGTATGAAGCAAGTGA+TGG | + | tig0000667:1575-1594 | Msa1335690:intergenic | 45.0% | |
| ! | TTGCTCCAATTGTGCTGACA+TGG | - | tig0000667:1644-1663 | Msa1335690:CDS | 45.0% |
| AGTAGCCATGTCAGCACAAT+TGG | + | tig0000667:1652-1671 | Msa1335690:intergenic | 45.0% | |
| CTACTGTGCATTAGCACACT+TGG | - | tig0000667:1667-1686 | Msa1335690:CDS | 45.0% | |
| GATAAGTGGATGGCTGTCTT+TGG | - | tig0000667:1774-1793 | Msa1335690:CDS | 45.0% | |
| GCAGATTGCATTCACCTTTC+TGG | - | tig0000667:2412-2431 | Msa1335690:five_prime_UTR | 45.0% | |
| ! | TTGAACCTGGGAGGAAGTGT+TGG | - | tig0000667:371-390 | Msa1335690:CDS | 50.0% |
| !! | TGAACCTGGGAGGAAGTGTT+GGG | - | tig0000667:372-391 | Msa1335690:CDS | 50.0% |
| !! | CTACTGGCTTACCAGAGTCT+TGG | - | tig0000667:536-555 | Msa1335690:intron | 50.0% |
| TGTATGTGTGGCTATGCAGG+TGG | - | tig0000667:827-846 | Msa1335690:intron | 50.0% | |
| AGTGCTTACCCCAGCCATTT+CGG | - | tig0000667:1066-1085 | Msa1335690:CDS | 50.0% | |
| GGATTCTTACCCGAAATGGC+TGG | + | tig0000667:1079-1098 | Msa1335690:intergenic | 50.0% | |
| TTAACCCTTCGATTTCCGGG+AGG | + | tig0000667:1267-1286 | Msa1335690:intergenic | 50.0% | |
| !! | CTCAGCAGTATCTGGTCTTG+AGG | - | tig0000667:1352-1371 | Msa1335690:intron | 50.0% |
| ! | TTGAACCTGGGAGGAAGTGT+TGG | - | tig0000667:371-390 | Msa1335690:CDS | 50.0% |
| !! | TGAACCTGGGAGGAAGTGTT+GGG | - | tig0000667:372-391 | Msa1335690:CDS | 50.0% |
| !! | CTACTGGCTTACCAGAGTCT+TGG | - | tig0000667:536-555 | Msa1335690:intron | 50.0% |
| TGTATGTGTGGCTATGCAGG+TGG | - | tig0000667:827-846 | Msa1335690:intron | 50.0% | |
| AGTGCTTACCCCAGCCATTT+CGG | - | tig0000667:1066-1085 | Msa1335690:CDS | 50.0% | |
| GGATTCTTACCCGAAATGGC+TGG | + | tig0000667:1079-1098 | Msa1335690:intergenic | 50.0% | |
| TTAACCCTTCGATTTCCGGG+AGG | + | tig0000667:1267-1286 | Msa1335690:intergenic | 50.0% | |
| !! | CTCAGCAGTATCTGGTCTTG+AGG | - | tig0000667:1352-1371 | Msa1335690:intron | 50.0% |
| CTATCCCAACACTTCCTCCC+AGG | + | tig0000667:379-398 | Msa1335690:intergenic | 55.0% | |
| GTGCTTACCCCAGCCATTTC+GGG | - | tig0000667:1067-1086 | Msa1335690:CDS | 55.0% | |
| CGGTTTAGGTCGAATCGACC+AGG | - | tig0000667:1165-1184 | Msa1335690:intron | 55.0% | |
| CTTACTCCGGATTACTGGGG+CGG | - | tig0000667:1236-1255 | Msa1335690:intron | 55.0% | |
| CCTTCGATTTCCGGGAGGAA+GGG | + | tig0000667:1262-1281 | Msa1335690:intergenic | 55.0% | |
| CCTTCCTCCCGGAAATCGAA+GGG | - | tig0000667:1260-1279 | Msa1335690:intron | 55.0% | |
| AGTGGATGGCTGTCTTTGGG+TGG | - | tig0000667:1778-1797 | Msa1335690:CDS | 55.0% | |
| CTATCCCAACACTTCCTCCC+AGG | + | tig0000667:379-398 | Msa1335690:intergenic | 55.0% | |
| GTGCTTACCCCAGCCATTTC+GGG | - | tig0000667:1067-1086 | Msa1335690:CDS | 55.0% | |
| CGGTTTAGGTCGAATCGACC+AGG | - | tig0000667:1165-1184 | Msa1335690:intron | 55.0% | |
| CTTACTCCGGATTACTGGGG+CGG | - | tig0000667:1236-1255 | Msa1335690:intron | 55.0% | |
| CCTTCGATTTCCGGGAGGAA+GGG | + | tig0000667:1262-1281 | Msa1335690:intergenic | 55.0% | |
| CCTTCCTCCCGGAAATCGAA+GGG | - | tig0000667:1260-1279 | Msa1335690:intron | 55.0% | |
| AGTGGATGGCTGTCTTTGGG+TGG | - | tig0000667:1778-1797 | Msa1335690:CDS | 55.0% | |
| CCCTTCCTCCCGGAAATCGA+AGG | - | tig0000667:1259-1278 | Msa1335690:intron | 60.0% | |
| CCCTTCGATTTCCGGGAGGA+AGG | + | tig0000667:1263-1282 | Msa1335690:intergenic | 60.0% | |
| CCCTTCCTCCCGGAAATCGA+AGG | - | tig0000667:1259-1278 | Msa1335690:intron | 60.0% | |
| CCCTTCGATTTCCGGGAGGA+AGG | + | tig0000667:1263-1282 | Msa1335690:intergenic | 60.0% | |
| GAAGGGCCGCCCCAGTAATC+CGG | + | tig0000667:1245-1264 | Msa1335690:intergenic | 65.0% | |
| GAAGGGCCGCCCCAGTAATC+CGG | + | tig0000667:1245-1264 | Msa1335690:intergenic | 65.0% | |
| ACTGGGGCGGCCCTTCCTCC+CGG | - | tig0000667:1249-1268 | Msa1335690:intron | 75.0% | |
| ACTGGGGCGGCCCTTCCTCC+CGG | - | tig0000667:1249-1268 | Msa1335690:intron | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0000667 | gene | 132 | 2532 | 132 | ID=Msa1335690;Name=Msa1335690 |
| tig0000667 | mRNA | 132 | 2532 | 132 | ID=Msa1335690-mRNA-1;Parent=Msa1335690;Name=Msa1335690-mRNA-1;_AED=0.08;_eAED=0.08;_QI=232|0.8|0.66|1|0.8|1|6|0|301 |
| tig0000667 | exon | 132 | 248 | 132 | ID=Msa1335690-mRNA-1:exon:335;Parent=Msa1335690-mRNA-1 |
| tig0000667 | exon | 354 | 406 | 354 | ID=Msa1335690-mRNA-1:exon:334;Parent=Msa1335690-mRNA-1 |
| tig0000667 | exon | 844 | 1104 | 844 | ID=Msa1335690-mRNA-1:exon:333;Parent=Msa1335690-mRNA-1 |
| tig0000667 | exon | 1624 | 1818 | 1624 | ID=Msa1335690-mRNA-1:exon:332;Parent=Msa1335690-mRNA-1 |
| tig0000667 | exon | 1918 | 2152 | 1918 | ID=Msa1335690-mRNA-1:exon:331;Parent=Msa1335690-mRNA-1 |
| tig0000667 | exon | 2259 | 2532 | 2259 | ID=Msa1335690-mRNA-1:exon:330;Parent=Msa1335690-mRNA-1 |
| tig0000667 | five_prime_UTR | 2301 | 2532 | 2301 | ID=Msa1335690-mRNA-1:five_prime_utr;Parent=Msa1335690-mRNA-1 |
| tig0000667 | CDS | 2259 | 2300 | 2259 | ID=Msa1335690-mRNA-1:cds;Parent=Msa1335690-mRNA-1 |
| tig0000667 | CDS | 1918 | 2152 | 1918 | ID=Msa1335690-mRNA-1:cds;Parent=Msa1335690-mRNA-1 |
| tig0000667 | CDS | 1624 | 1818 | 1624 | ID=Msa1335690-mRNA-1:cds;Parent=Msa1335690-mRNA-1 |
| tig0000667 | CDS | 844 | 1104 | 844 | ID=Msa1335690-mRNA-1:cds;Parent=Msa1335690-mRNA-1 |
| tig0000667 | CDS | 354 | 406 | 354 | ID=Msa1335690-mRNA-1:cds;Parent=Msa1335690-mRNA-1 |
| tig0000667 | CDS | 132 | 248 | 132 | ID=Msa1335690-mRNA-1:cds;Parent=Msa1335690-mRNA-1 |
| Gene Sequence |
| Protein sequence |
