Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0308820 | XP_003594167.1 | 96.733 | 551 | 7 | 1 | 1 | 551 | 1 | 540 | 0.0 | 1095 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0308820 | sp|B3LF48|EHD2_ARATH | 76.287 | 544 | 117 | 2 | 8 | 551 | 14 | 545 | 0.0 | 881 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0233020 | Msa0308820 | 0.801056 | 1.077782e-48 | -8.615850e-47 |
| Msa0289880 | Msa0308820 | 0.988416 | 6.209537e-174 | -8.615850e-47 |
| Msa0308820 | Msa0380490 | 0.811486 | 6.836506e-51 | -8.615850e-47 |
| Msa0308820 | Msa0430000 | 0.817360 | 3.434028e-52 | -8.615850e-47 |
| Msa0308820 | Msa0481890 | 0.809318 | 2.007281e-50 | -8.615850e-47 |
| Msa0308820 | Msa0500570 | 0.824772 | 6.733930e-54 | -8.615850e-47 |
| Msa0308820 | Msa0709440 | 0.807843 | 4.147473e-50 | -8.615850e-47 |
| Msa0308820 | Msa1084530 | 0.808765 | 2.636739e-50 | -8.615850e-47 |
| Msa0308820 | Msa1114630 | 0.806650 | 7.420839e-50 | -8.615850e-47 |
| Msa0308820 | Msa1125820 | 0.808678 | 2.752421e-50 | -8.615850e-47 |
| Msa0308820 | Msa1125990 | 0.808126 | 3.609046e-50 | -8.615850e-47 |
| Msa0308820 | Msa1171290 | 0.807282 | 5.453685e-50 | -8.615850e-47 |
| Msa0308820 | Msa1368750 | 0.802277 | 6.055593e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0308820 | MtrunA17_Chr2g0289411 | 96.733 | 551 | 7 | 1 | 1 | 551 | 1 | 540 | 0.0 | 1095 |
| Msa0308820 | MtrunA17_Chr4g0075521 | 78.716 | 545 | 102 | 2 | 7 | 551 | 12 | 542 | 0.0 | 900 |
| Msa0308820 | MtrunA17_Chr5g0444771 | 76.697 | 545 | 114 | 2 | 7 | 551 | 12 | 543 | 0.0 | 852 |
| Msa0308820 | MtrunA17_Chr3g0099991 | 77.641 | 407 | 77 | 2 | 144 | 550 | 79 | 471 | 0.0 | 665 |
| Msa0308820 | MtrunA17_Chr3g0099991 | 67.647 | 68 | 22 | 0 | 7 | 74 | 15 | 82 | 1.60e-25 | 109 |
| Msa0308820 | MtrunA17_Chr3g0100041 | 72.941 | 425 | 97 | 3 | 129 | 548 | 25 | 436 | 0.0 | 647 |
| Msa0308820 | MtrunA17_Chr3g0144041 | 46.250 | 80 | 43 | 0 | 14 | 93 | 10 | 89 | 1.52e-14 | 77.0 |
| Msa0308820 | MtrunA17_Chr1g0152711 | 41.667 | 84 | 49 | 0 | 7 | 90 | 8 | 91 | 2.72e-14 | 70.5 |
| Msa0308820 | MtrunA17_Chr5g0448681 | 42.500 | 80 | 46 | 0 | 14 | 93 | 14 | 93 | 1.09e-12 | 71.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0308820 | AT4G05520.1 | 76.287 | 544 | 117 | 2 | 8 | 551 | 14 | 545 | 0.0 | 881 |
| Msa0308820 | AT4G05520.2 | 76.471 | 544 | 115 | 3 | 8 | 551 | 14 | 544 | 0.0 | 877 |
| Msa0308820 | AT3G20290.3 | 75.046 | 545 | 125 | 1 | 7 | 551 | 12 | 545 | 0.0 | 846 |
| Msa0308820 | AT3G20290.1 | 75.046 | 545 | 125 | 1 | 7 | 551 | 12 | 545 | 0.0 | 846 |
| Msa0308820 | AT3G20290.2 | 75.046 | 545 | 125 | 1 | 7 | 551 | 12 | 545 | 0.0 | 846 |
| Msa0308820 | AT1G21630.2 | 39.167 | 120 | 69 | 2 | 14 | 130 | 13 | 131 | 1.14e-15 | 81.3 |
| Msa0308820 | AT1G21630.4 | 39.167 | 120 | 69 | 2 | 14 | 130 | 13 | 131 | 1.15e-15 | 81.3 |
| Msa0308820 | AT1G21630.1 | 39.167 | 120 | 69 | 2 | 14 | 130 | 13 | 131 | 1.26e-15 | 80.9 |
| Msa0308820 | AT1G21630.3 | 39.167 | 120 | 69 | 2 | 14 | 130 | 13 | 131 | 1.27e-15 | 80.9 |
| Msa0308820 | AT1G20760.1 | 27.219 | 169 | 116 | 3 | 14 | 176 | 11 | 178 | 8.42e-13 | 72.0 |
Find 115 sgRNAs with CRISPR-Local
Find 247 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACGAAGTTCCGTCTTCATTT+TGG | 0.158790 | 2_4:-3238665 | None:intergenic |
| TTCAATGGCCTGACAACTTT+TGG | 0.228735 | 2_4:+3241835 | Msa0308820:CDS |
| CGACGATCACAAGCCTTCTT+TGG | 0.239572 | 2_4:-3242805 | None:intergenic |
| ATAAGTAGCAGTTTCTTCTT+TGG | 0.255285 | 2_4:-3238689 | None:intergenic |
| TGGTTCAATTTAGCAGATTC+AGG | 0.261126 | 2_4:+3238718 | Msa0308820:CDS |
| TTCTCAACTCAAGCAGCTTT+GGG | 0.264704 | 2_4:+3238886 | Msa0308820:CDS |
| CTGAATTTCTTCAAAAGCTC+TGG | 0.269036 | 2_4:-3243360 | None:intergenic |
| CTCTAAACATTTCAATCATA+TGG | 0.269593 | 2_4:-3243387 | None:intergenic |
| CGATCTGTTGGCAGATTTGC+TGG | 0.294381 | 2_4:+3242777 | Msa0308820:CDS |
| GTTCTCAACTCAAGCAGCTT+TGG | 0.296386 | 2_4:+3238885 | Msa0308820:CDS |
| ATATCCTAGCATGTCATCTA+TGG | 0.298727 | 2_4:-3243331 | None:intergenic |
| TTTCAGCTTATGAGAGTCTA+TGG | 0.303862 | 2_4:+3242336 | Msa0308820:intron |
| TCTATGGCTTGAATCATCTT+TGG | 0.312040 | 2_4:-3243315 | None:intergenic |
| AGGGGTATCTTCCTTTCTTA+AGG | 0.339968 | 2_4:-3243587 | None:intergenic |
| TGTTTAAGAAATGTAAGATT+TGG | 0.353579 | 2_4:+3243470 | Msa0308820:three_prime_UTR |
| TCAGCAAATCCTTCATTTGT+AGG | 0.356837 | 2_4:-3242718 | None:intergenic |
| AAACCCATGGTCATGCTTCT+TGG | 0.358104 | 2_4:+3241353 | Msa0308820:CDS |
| TTTATTGATTGCAGTGGATA+AGG | 0.364448 | 2_4:+3239731 | Msa0308820:intron |
| TCCTGATGAGAGGAGTATTC+CGG | 0.365591 | 2_4:+3241780 | Msa0308820:CDS |
| CAAGTTTATGTGGATCAAAT+AGG | 0.377884 | 2_4:-3242113 | None:intergenic |
| ATTTCACTGGTGTTGTATCT+TGG | 0.382318 | 2_4:+3242061 | Msa0308820:CDS |
| ACAACAAATCTATCTGTTGT+AGG | 0.392224 | 2_4:-3241579 | None:intergenic |
| AGTTATTGAAGAATTGTAGA+TGG | 0.398575 | 2_4:+3243503 | Msa0308820:three_prime_UTR |
| AATGATAAGCCTACAAATGA+AGG | 0.405339 | 2_4:+3242709 | Msa0308820:CDS |
| TACATTTCTTAAACATATGA+TGG | 0.406782 | 2_4:-3243462 | None:intergenic |
| TTGGCTTTGCCCATCATTGT+TGG | 0.414699 | 2_4:-3242996 | None:intergenic |
| TTTGAGGTGAACCATGAGTT+AGG | 0.416298 | 2_4:-3240063 | None:intergenic |
| GCAGTTACATCAATAGTTGA+TGG | 0.418875 | 2_4:+3241073 | Msa0308820:CDS |
| GAGAAGAATGACATCACATT+TGG | 0.419446 | 2_4:-3242091 | None:intergenic |
| ATGTATACACGAGCAACTTC+AGG | 0.422470 | 2_4:-3242396 | None:intergenic |
| CCTGATGAGAGGAGTATTCC+GGG | 0.428878 | 2_4:+3241781 | Msa0308820:CDS |
| AACATTGTGAAAATAGTAAT+GGG | 0.429556 | 2_4:-3243611 | None:intergenic |
| TTGGCATCTCCTTCTTAAGA+TGG | 0.431839 | 2_4:-3242977 | None:intergenic |
| TTAACAGCTATCGTGTTTCC+CGG | 0.433179 | 2_4:-3241799 | None:intergenic |
| AACCATGAGTTAGGTAGAAA+TGG | 0.443223 | 2_4:-3240054 | None:intergenic |
| GTTAAACCACCTGTGATTGA+AGG | 0.446270 | 2_4:+3239759 | Msa0308820:CDS |
| TTGTGTCCTTTGTTTCTCTC+CGG | 0.449994 | 2_4:-3242028 | None:intergenic |
| TTTGCTGGATATTCCAAAGA+AGG | 0.454283 | 2_4:+3242792 | Msa0308820:CDS |
| AATCTATCTGTTGTAGGCTC+TGG | 0.454663 | 2_4:-3241573 | None:intergenic |
| ATCTAACCATTCACTTCAGA+TGG | 0.454784 | 2_4:-3239929 | None:intergenic |
| GAAGGAGATGCCAACAATGA+TGG | 0.458954 | 2_4:+3242986 | Msa0308820:CDS |
| GACACTCCTGGTGTCCTATC+CGG | 0.460325 | 2_4:+3242009 | Msa0308820:CDS |
| TTTCTAGATAACCTTAAGAA+AGG | 0.470932 | 2_4:+3243576 | Msa0308820:three_prime_UTR |
| TTCTCTGAAGTGCTCAACCC+TGG | 0.470956 | 2_4:-3243250 | None:intergenic |
| TGAATTTCTTCAAAAGCTCT+GGG | 0.473582 | 2_4:-3243359 | None:intergenic |
| GAACATTGTGAAAATAGTAA+TGG | 0.478852 | 2_4:-3243612 | None:intergenic |
| AGAAATTAAGGAACCAAAGT+AGG | 0.479321 | 2_4:-3243089 | None:intergenic |
| CCCGGAATACTCCTCTCATC+AGG | 0.493726 | 2_4:-3241781 | None:intergenic |
| AATGCTGATATGCCTTTCAA+TGG | 0.494165 | 2_4:+3241820 | Msa0308820:CDS |
| AGAGTTCGTTACTGCTATGC+AGG | 0.494958 | 2_4:+3238949 | Msa0308820:CDS |
| AGATAGATTTGTTGTTGTCA+TGG | 0.495429 | 2_4:+3241587 | Msa0308820:CDS |
| AAAGAAGGCTTGTGATCGTC+GGG | 0.496833 | 2_4:+3242807 | Msa0308820:CDS |
| ATGAACCTCCAAAAGTTGTC+AGG | 0.498414 | 2_4:-3241843 | None:intergenic |
| CATAATTAGCCATCTTAAGA+AGG | 0.498909 | 2_4:+3242968 | Msa0308820:CDS |
| TCACTGATGTCAAGTTTATG+TGG | 0.498975 | 2_4:-3242123 | None:intergenic |
| CGAATATGAATATTAATCAA+TGG | 0.500948 | 2_4:-3243534 | None:intergenic |
| TTGCTAAAATGTGATTATCC+AGG | 0.506481 | 2_4:+3241413 | Msa0308820:CDS |
| TCCTTTGTTTCTCTCCGGAT+AGG | 0.506615 | 2_4:-3242023 | None:intergenic |
| TTCTCTCCGGATAGGACACC+AGG | 0.509293 | 2_4:-3242015 | None:intergenic |
| CTTCTTGGTCAATACTCTAC+GGG | 0.509946 | 2_4:+3241368 | Msa0308820:CDS |
| GAAGGATTTGCTGATCCACT+AGG | 0.516671 | 2_4:+3242727 | Msa0308820:CDS |
| GGAGCATTGATGTGGTCTCT+AGG | 0.517718 | 2_4:+3242357 | Msa0308820:CDS |
| GCTTCTTGGTCAATACTCTA+CGG | 0.519068 | 2_4:+3241367 | Msa0308820:CDS |
| TACTGAGAGACTAAAACCCT+TGG | 0.519609 | 2_4:+3241111 | Msa0308820:CDS |
| ACTATTGATGTAACTGCACT+TGG | 0.522383 | 2_4:-3241067 | None:intergenic |
| AAGTTGCTCGTGTATACATT+GGG | 0.528589 | 2_4:+3242400 | Msa0308820:CDS |
| GTAACAATCGTGGACACTCC+TGG | 0.529554 | 2_4:+3241997 | Msa0308820:CDS |
| TTGGTTTCGCTTGCACAAGC+AGG | 0.535711 | 2_4:+3239058 | Msa0308820:CDS |
| CAAAGAAGCTATGATTTCAC+TGG | 0.538899 | 2_4:+3242048 | Msa0308820:CDS |
| AAGGAGATGCCAACAATGAT+GGG | 0.539017 | 2_4:+3242987 | Msa0308820:CDS |
| TCTCGACAATGAATTTGCTA+AGG | 0.540593 | 2_4:+3243043 | Msa0308820:CDS |
| TCTACCCCATCTGAAGTGAA+TGG | 0.542922 | 2_4:+3239923 | Msa0308820:CDS |
| GTATCTAATCCTTCAATCAC+AGG | 0.543449 | 2_4:-3239768 | None:intergenic |
| GAAGTTGCTCGTGTATACAT+TGG | 0.544563 | 2_4:+3242399 | Msa0308820:CDS |
| GTAACTCAGGAGCACACATT+GGG | 0.545234 | 2_4:+3241550 | Msa0308820:intron |
| AACCATTTCTACCTAACTCA+TGG | 0.545772 | 2_4:+3240052 | Msa0308820:CDS |
| ATATCTATAAGCAACTTCCA+AGG | 0.548186 | 2_4:-3241128 | None:intergenic |
| ATTGATGTAACTGCACTTGG+AGG | 0.553248 | 2_4:-3241064 | None:intergenic |
| TGTAACTCAGGAGCACACAT+TGG | 0.556316 | 2_4:+3241549 | Msa0308820:intron |
| TTGTGAAAATAGTAATGGGA+AGG | 0.557534 | 2_4:-3243607 | None:intergenic |
| TATCTATAAGCAACTTCCAA+GGG | 0.563019 | 2_4:-3241127 | None:intergenic |
| CAAAGAAGGCTTGTGATCGT+CGG | 0.567904 | 2_4:+3242806 | Msa0308820:CDS |
| TGTGAAAATAGTAATGGGAA+GGG | 0.569245 | 2_4:-3243606 | None:intergenic |
| GTGAAAATAGTAATGGGAAG+GGG | 0.569406 | 2_4:-3243605 | None:intergenic |
| TCTAACCATTCACTTCAGAT+GGG | 0.569787 | 2_4:-3239928 | None:intergenic |
| AACAATGATGGGCAAAGCCA+AGG | 0.570949 | 2_4:+3242998 | Msa0308820:CDS |
| TCTCTGAAGTGCTCAACCCT+GGG | 0.571790 | 2_4:-3243249 | None:intergenic |
| GAAGGAACAGAACGATCTGT+TGG | 0.574737 | 2_4:+3242765 | Msa0308820:CDS |
| TTTAGCATCAAAATCGCTGT+TGG | 0.576969 | 2_4:-3241333 | None:intergenic |
| GAGTTAGGTAGAAATGGTTG+AGG | 0.585999 | 2_4:-3240048 | None:intergenic |
| AAAGTTGTCAGGCCATTGAA+AGG | 0.591326 | 2_4:-3241832 | None:intergenic |
| CGTGTTATTTCATCTTTACG+TGG | 0.592910 | 2_4:+3242156 | Msa0308820:CDS |
| TTCATCTTTACGTGGCAATG+AGG | 0.594226 | 2_4:+3242164 | Msa0308820:CDS |
| CAAGCCATAGATGACATGCT+AGG | 0.594699 | 2_4:+3243327 | Msa0308820:CDS |
| GATGGAGACGGACGCATCAG+TGG | 0.595100 | 2_4:+3238821 | Msa0308820:intron |
| AAGGATTTGCTGATCCACTA+GGG | 0.600452 | 2_4:+3242728 | Msa0308820:CDS |
| GTAGGCAAAAGTGAAGGTGG+AGG | 0.602403 | 2_4:-3243071 | None:intergenic |
| ATACTTGTTGAGTATCAACT+TGG | 0.610855 | 2_4:-3242218 | None:intergenic |
| TTGACCAAGAAGCATGACCA+TGG | 0.611614 | 2_4:-3241357 | None:intergenic |
| CAAATGCCACTTACTAGCAA+CGG | 0.611992 | 2_4:-3241166 | None:intergenic |
| TATAGGCTGGTCCTGATGAG+AGG | 0.614366 | 2_4:+3241770 | Msa0308820:intron |
| TCAACCCTGGGAAAATCACC+AGG | 0.623456 | 2_4:-3243237 | None:intergenic |
| AAAGTAGGCAAAAGTGAAGG+TGG | 0.626269 | 2_4:-3243074 | None:intergenic |
| TGACCAAGAAGCATGACCAT+GGG | 0.632896 | 2_4:-3241356 | None:intergenic |
| TCCTATCCGGAGAGAAACAA+AGG | 0.636447 | 2_4:+3242022 | Msa0308820:CDS |
| TCTAATCCTTCAATCACAGG+TGG | 0.649072 | 2_4:-3239765 | None:intergenic |
| AAACTGCTACTTATCAACAA+TGG | 0.653929 | 2_4:+3238698 | Msa0308820:CDS |
| AGAGAGTATCATCTACCACC+TGG | 0.657076 | 2_4:+3243219 | Msa0308820:CDS |
| GTTGGATGAAGTAACAATCG+TGG | 0.666004 | 2_4:+3241987 | Msa0308820:CDS |
| ACCAAAGTAGGCAAAAGTGA+AGG | 0.673037 | 2_4:-3243077 | None:intergenic |
| CTAACCATTCACTTCAGATG+GGG | 0.675731 | 2_4:-3239927 | None:intergenic |
| CTTGCTGATAACAAACGACA+AGG | 0.678146 | 2_4:+3238911 | Msa0308820:CDS |
| CAATGAGGACAAGATACGTG+TGG | 0.698824 | 2_4:+3242179 | Msa0308820:CDS |
| GAGTCTATGGAGCATTGATG+TGG | 0.700514 | 2_4:+3242349 | Msa0308820:CDS |
| ACCCTGGGAAAATCACCAGG+TGG | 0.744060 | 2_4:-3243234 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CAAATTAATATTAAGAATAT+AGG | - | chr2_4:3241000-3241019 | None:intergenic | 10.0% |
| !!! | GTATGTTTTAATTATAAAAT+AGG | - | chr2_4:3241194-3241213 | None:intergenic | 10.0% |
| !!! | TCATTTATCTTTTAATTTAT+AGG | + | chr2_4:3241753-3241772 | Msa0308820:intron | 10.0% |
| !! | TGTTAATGCATTATATTAAT+TGG | + | chr2_4:3239461-3239480 | Msa0308820:intron | 15.0% |
| !! | TATAAATAAAAAAAACTCAC+TGG | - | chr2_4:3241904-3241923 | None:intergenic | 15.0% |
| !! | TTGCTAATTTCAAATTATTT+AGG | + | chr2_4:3242835-3242854 | Msa0308820:intron | 15.0% |
| !! | AAGTCATAGATAAGATTAAT+AGG | - | chr2_4:3239223-3239242 | None:intergenic | 20.0% |
| !!! | TTTTGATTCATAGTTTCAAA+TGG | + | chr2_4:3239500-3239519 | Msa0308820:intron | 20.0% |
| !! | ATATTAACAATTCAAGTGTT+TGG | + | chr2_4:3239535-3239554 | Msa0308820:intron | 20.0% |
| !!! | AACATTTTAGAGAACATTTT+GGG | + | chr2_4:3240446-3240465 | Msa0308820:intron | 20.0% |
| !!! | AGTGTTTAGCTTTAAAATAA+AGG | + | chr2_4:3240675-3240694 | Msa0308820:intron | 20.0% |
| !! | ATCCTACTTAAAAACAATTT+AGG | + | chr2_4:3240921-3240940 | Msa0308820:intron | 20.0% |
| !!! | TACCTAAATTGTTTTTAAGT+AGG | - | chr2_4:3240926-3240945 | None:intergenic | 20.0% |
| !! | TTAACATCATCATATTTACA+TGG | - | chr2_4:3241281-3241300 | None:intergenic | 20.0% |
| !!! | ATTTACAAAATTGATGATTG+CGG | + | chr2_4:3241484-3241503 | Msa0308820:intron | 20.0% |
| !!! | TAAAAGATAAATGAGTTTTG+AGG | - | chr2_4:3241747-3241766 | None:intergenic | 20.0% |
| !!! | TTATCTTTTAATTTATAGGC+TGG | + | chr2_4:3241757-3241776 | Msa0308820:intron | 20.0% |
| !! | ATATATTCCAAGTCAAATTA+CGG | + | chr2_4:3241921-3241940 | Msa0308820:intron | 20.0% |
| !!! | TTACACATCCTTTTATTTAA+TGG | + | chr2_4:3242272-3242291 | Msa0308820:intron | 20.0% |
| !! | AAACATAAATGAAAAGTTAC+AGG | - | chr2_4:3243154-3243173 | None:intergenic | 20.0% |
| !!! | CATTTTACATTTCAATCATA+TGG | - | chr2_4:3243425-3243444 | None:intergenic | 20.0% |
| !! | TACATTTCTTAAACATATGA+TGG | - | chr2_4:3243465-3243484 | None:intergenic | 20.0% |
| !! | TGTTTAAGAAATGTAAGATT+TGG | + | chr2_4:3243470-3243489 | Msa0308820:three_prime_UTR | 20.0% |
| !! | CGAATATGAATATTAATCAA+TGG | - | chr2_4:3243537-3243556 | None:intergenic | 20.0% |
| !! | ACGATTTGTTTCATTTGATT+CGG | + | chr2_4:3238784-3238803 | Msa0308820:intron | 25.0% |
| !!! | TTTGATTTGTTATGAACAGT+TGG | + | chr2_4:3239039-3239058 | Msa0308820:intron | 25.0% |
| ! | ATCAAAAATCATTCTACAAG+CGG | - | chr2_4:3239487-3239506 | None:intergenic | 25.0% |
| !!! | AGTTTAAAAGTTTTGTCACT+AGG | + | chr2_4:3239665-3239684 | Msa0308820:intron | 25.0% |
| !!! | GTTTAAAAGTTTTGTCACTA+GGG | + | chr2_4:3239666-3239685 | Msa0308820:intron | 25.0% |
| !!! | TTCTTTTTTATTGATTGCAG+TGG | + | chr2_4:3239725-3239744 | Msa0308820:intron | 25.0% |
| ! | TTAGTAATTAAGCACAATGT+GGG | - | chr2_4:3239818-3239837 | None:intergenic | 25.0% |
| !!! | TAGTTTGCTGCAAAAAAATA+AGG | - | chr2_4:3239889-3239908 | None:intergenic | 25.0% |
| !!! | CAACAACTTGTTAAACAAAA+TGG | - | chr2_4:3240210-3240229 | None:intergenic | 25.0% |
| !!! | CATTTTGTTTAACAAGTTGT+TGG | + | chr2_4:3240208-3240227 | Msa0308820:intron | 25.0% |
| ! | AAGGATATCTCAATTACAAA+AGG | - | chr2_4:3240286-3240305 | None:intergenic | 25.0% |
| ! | AATGATCTTTATATGCTTCA+AGG | - | chr2_4:3240305-3240324 | None:intergenic | 25.0% |
| !!! | CAACATTTTAGAGAACATTT+TGG | + | chr2_4:3240445-3240464 | Msa0308820:intron | 25.0% |
| ! | TAGCTAGCATAATCTTTATA+GGG | - | chr2_4:3240510-3240529 | None:intergenic | 25.0% |
| ! | ATAGCTAGCATAATCTTTAT+AGG | - | chr2_4:3240511-3240530 | None:intergenic | 25.0% |
| !!! | TTTACTCTTTGTTGTTCTTT+TGG | + | chr2_4:3240606-3240625 | Msa0308820:intron | 25.0% |
| ! | ATTATTGCCAATGTAAAAGT+GGG | - | chr2_4:3240653-3240672 | None:intergenic | 25.0% |
| ! | TATTATTGCCAATGTAAAAG+TGG | - | chr2_4:3240654-3240673 | None:intergenic | 25.0% |
| ! | CAAAATAAGGAAATGGAAAT+GGG | - | chr2_4:3240822-3240841 | None:intergenic | 25.0% |
| !! | TTTACAAAATTGATGATTGC+GGG | + | chr2_4:3241485-3241504 | Msa0308820:intron | 25.0% |
| ! | TTAGCACACCATTAAATAAA+AGG | - | chr2_4:3242283-3242302 | None:intergenic | 25.0% |
| ! | CTCTAAACATTTCAATCATA+TGG | - | chr2_4:3243390-3243409 | None:intergenic | 25.0% |
| ! | AGTTATTGAAGAATTGTAGA+TGG | + | chr2_4:3243503-3243522 | Msa0308820:three_prime_UTR | 25.0% |
| ! | TTTCTAGATAACCTTAAGAA+AGG | + | chr2_4:3243576-3243595 | Msa0308820:three_prime_UTR | 25.0% |
| ATAAGTAGCAGTTTCTTCTT+TGG | - | chr2_4:3238692-3238711 | None:intergenic | 30.0% | |
| ! | AAACTGCTACTTATCAACAA+TGG | + | chr2_4:3238698-3238717 | Msa0308820:CDS | 30.0% |
| !! | TTTTTGATTGTAGATGGAGA+CGG | + | chr2_4:3238809-3238828 | Msa0308820:intron | 30.0% |
| ! | AACAAACGACAAGGATTTTT+AGG | + | chr2_4:3238920-3238939 | Msa0308820:CDS | 30.0% |
| !! | CTTTGATTTTAAATCCGCTA+AGG | + | chr2_4:3239625-3239644 | Msa0308820:intron | 30.0% |
| TTTAAATCCGCTAAGGAATT+AGG | + | chr2_4:3239632-3239651 | Msa0308820:intron | 30.0% | |
| TTAAATCCGCTAAGGAATTA+GGG | + | chr2_4:3239633-3239652 | Msa0308820:intron | 30.0% | |
| TAAAATCCCTAATTCCTTAG+CGG | - | chr2_4:3239642-3239661 | None:intergenic | 30.0% | |
| ! | TTTATTGATTGCAGTGGATA+AGG | + | chr2_4:3239731-3239750 | Msa0308820:intron | 30.0% |
| TAGTAATTAAGCACAATGTG+GGG | - | chr2_4:3239817-3239836 | None:intergenic | 30.0% | |
| CTTAGTAATTAAGCACAATG+TGG | - | chr2_4:3239819-3239838 | None:intergenic | 30.0% | |
| !! | CACTTTCTTTGAAGATTTTG+AGG | - | chr2_4:3240082-3240101 | None:intergenic | 30.0% |
| AACTTATGATTCCTAGTTGT+AGG | + | chr2_4:3240150-3240169 | Msa0308820:intron | 30.0% | |
| ATATAAAGATCATTTCCCGA+TGG | + | chr2_4:3240311-3240330 | Msa0308820:intron | 30.0% | |
| TATAAAGATCATTTCCCGAT+GGG | + | chr2_4:3240312-3240331 | Msa0308820:intron | 30.0% | |
| !! | TTCATTAACTTGTGCCTTAA+GGG | - | chr2_4:3240353-3240372 | None:intergenic | 30.0% |
| !! | ATTCATTAACTTGTGCCTTA+AGG | - | chr2_4:3240354-3240373 | None:intergenic | 30.0% |
| ! | ACTTTCTCTTCAACTCATTT+TGG | - | chr2_4:3240542-3240561 | None:intergenic | 30.0% |
| TGAGTGTGAACTATTAAAAG+CGG | - | chr2_4:3240568-3240587 | None:intergenic | 30.0% | |
| TCGCAAAAATAAGGTGAATA+AGG | - | chr2_4:3240719-3240738 | None:intergenic | 30.0% | |
| GTTCTGTACAATTTCCTATT+AGG | + | chr2_4:3240760-3240779 | Msa0308820:intron | 30.0% | |
| ATGAAATACTACCTCCTAAT+AGG | - | chr2_4:3240777-3240796 | None:intergenic | 30.0% | |
| GCAAAATAAGGAAATGGAAA+TGG | - | chr2_4:3240823-3240842 | None:intergenic | 30.0% | |
| CAATGAATGGAAATGGAAAT+GGG | - | chr2_4:3240849-3240868 | None:intergenic | 30.0% | |
| TCAATGAATGGAAATGGAAA+TGG | - | chr2_4:3240850-3240869 | None:intergenic | 30.0% | |
| AACTCATCAATGAATGGAAA+TGG | - | chr2_4:3240856-3240875 | None:intergenic | 30.0% | |
| TGATTCAACTCATCAATGAA+TGG | - | chr2_4:3240862-3240881 | None:intergenic | 30.0% | |
| TATCTATAAGCAACTTCCAA+GGG | - | chr2_4:3241130-3241149 | None:intergenic | 30.0% | |
| ATATCTATAAGCAACTTCCA+AGG | - | chr2_4:3241131-3241150 | None:intergenic | 30.0% | |
| CACATGCAATTGACAAAATT+TGG | - | chr2_4:3241216-3241235 | None:intergenic | 30.0% | |
| TTGCTAAAATGTGATTATCC+AGG | + | chr2_4:3241413-3241432 | Msa0308820:CDS | 30.0% | |
| TAAAATGTGATTATCCAGGT+TGG | + | chr2_4:3241417-3241436 | Msa0308820:intron | 30.0% | |
| ! | TTACAAAATTGATGATTGCG+GGG | + | chr2_4:3241486-3241505 | Msa0308820:intron | 30.0% |
| TGAGTTACAAGAGAACATAT+AGG | - | chr2_4:3241538-3241557 | None:intergenic | 30.0% | |
| TATATGTTCTCTTGTAACTC+AGG | + | chr2_4:3241537-3241556 | Msa0308820:intron | 30.0% | |
| ACAACAAATCTATCTGTTGT+AGG | - | chr2_4:3241582-3241601 | None:intergenic | 30.0% | |
| !! | AGATAGATTTGTTGTTGTCA+TGG | + | chr2_4:3241587-3241606 | Msa0308820:CDS | 30.0% |
| TGTTCTTATATTGTTGTCTG+TGG | + | chr2_4:3241625-3241644 | Msa0308820:intron | 30.0% | |
| AGATTACAGTCAGAAAAACA+TGG | + | chr2_4:3241656-3241675 | Msa0308820:intron | 30.0% | |
| TAAAAAAAACTCACTGGATG+TGG | - | chr2_4:3241898-3241917 | None:intergenic | 30.0% | |
| ATATTGACCGTAATTTGACT+TGG | - | chr2_4:3241931-3241950 | None:intergenic | 30.0% | |
| !! | TATTTGTGTCTTTTAGCTGT+TGG | + | chr2_4:3241969-3241988 | Msa0308820:intron | 30.0% |
| CAAGTTTATGTGGATCAAAT+AGG | - | chr2_4:3242116-3242135 | None:intergenic | 30.0% | |
| ! | ATACTTGTTGAGTATCAACT+TGG | - | chr2_4:3242221-3242240 | None:intergenic | 30.0% |
| TAAGCTGAAATGTTACAATC+AGG | - | chr2_4:3242326-3242345 | None:intergenic | 30.0% | |
| ATCACAAGATGGTAAAGTAA+TGG | - | chr2_4:3242495-3242514 | None:intergenic | 30.0% | |
| ! | TGGATTTTCAAATCACAAGA+TGG | - | chr2_4:3242506-3242525 | None:intergenic | 30.0% |
| AATACAGTGTTCTCATTCTT+TGG | - | chr2_4:3242526-3242545 | None:intergenic | 30.0% | |
| AATGATAAGCCTACAAATGA+AGG | + | chr2_4:3242709-3242728 | Msa0308820:CDS | 30.0% | |
| TATGATGACATATCATGAAC+TGG | + | chr2_4:3242893-3242912 | Msa0308820:intron | 30.0% | |
| CATAATTAGCCATCTTAAGA+AGG | + | chr2_4:3242968-3242987 | Msa0308820:CDS | 30.0% | |
| AGAAATTAAGGAACCAAAGT+AGG | - | chr2_4:3243092-3243111 | None:intergenic | 30.0% | |
| ! | CCTGTTTTGTAAAACATAAC+AGG | - | chr2_4:3243194-3243213 | None:intergenic | 30.0% |
| ! | CCTGTTATGTTTTACAAAAC+AGG | + | chr2_4:3243191-3243210 | Msa0308820:intron | 30.0% |
| TGAATTTCTTCAAAAGCTCT+GGG | - | chr2_4:3243362-3243381 | None:intergenic | 30.0% | |
| ! | AGCGTTTTCCAAAATGAAGA+CGG | + | chr2_4:3238657-3238676 | Msa0308820:exon | 35.0% |
| TGGTTCAATTTAGCAGATTC+AGG | + | chr2_4:3238718-3238737 | Msa0308820:CDS | 35.0% | |
| !! | TCGGTGTTTTTGATTGTAGA+TGG | + | chr2_4:3238803-3238822 | Msa0308820:intron | 35.0% |
| GACATTTCTGATCGAAAATG+TGG | - | chr2_4:3239366-3239385 | None:intergenic | 35.0% | |
| !! | TAATGACAAGCTCTGAAACA+CGG | - | chr2_4:3239388-3239407 | None:intergenic | 35.0% |
| GTATCTAATCCTTCAATCAC+AGG | - | chr2_4:3239771-3239790 | None:intergenic | 35.0% | |
| TCTAACCATTCACTTCAGAT+GGG | - | chr2_4:3239931-3239950 | None:intergenic | 35.0% | |
| ATCTAACCATTCACTTCAGA+TGG | - | chr2_4:3239932-3239951 | None:intergenic | 35.0% | |
| AACCATTTCTACCTAACTCA+TGG | + | chr2_4:3240052-3240071 | Msa0308820:CDS | 35.0% | |
| AACCATGAGTTAGGTAGAAA+TGG | - | chr2_4:3240057-3240076 | None:intergenic | 35.0% | |
| ACAAGTTAACATTTCCCATC+GGG | - | chr2_4:3240329-3240348 | None:intergenic | 35.0% | |
| CACAAGTTAACATTTCCCAT+CGG | - | chr2_4:3240330-3240349 | None:intergenic | 35.0% | |
| !! | AATGTTAACTTGTGCCCTTA+AGG | + | chr2_4:3240336-3240355 | Msa0308820:intron | 35.0% |
| TTTCTTAACATGTGCCCTAA+GGG | + | chr2_4:3240469-3240488 | Msa0308820:intron | 35.0% | |
| ! | TGTTGTTCTTTTGGATGAAG+CGG | + | chr2_4:3240615-3240634 | Msa0308820:intron | 35.0% |
| !! | ATTACTGCCCACTTTTACAT+TGG | + | chr2_4:3240643-3240662 | Msa0308820:intron | 35.0% |
| !!! | TCACCTTATTTTTGCGAATG+TGG | + | chr2_4:3240722-3240741 | Msa0308820:intron | 35.0% |
| CAACCACATTCGCAAAAATA+AGG | - | chr2_4:3240728-3240747 | None:intergenic | 35.0% | |
| !!! | CTTATTTTTGCGAATGTGGT+TGG | + | chr2_4:3240726-3240745 | Msa0308820:intron | 35.0% |
| CTGTACAATTTCCTATTAGG+AGG | + | chr2_4:3240763-3240782 | Msa0308820:intron | 35.0% | |
| ATAAGGAAATGGAAATGGGA+GGG | - | chr2_4:3240818-3240837 | None:intergenic | 35.0% | |
| AATAAGGAAATGGAAATGGG+AGG | - | chr2_4:3240819-3240838 | None:intergenic | 35.0% | |
| CACTTGTGCAAACCAATATT+TGG | + | chr2_4:3240880-3240899 | Msa0308820:intron | 35.0% | |
| GTGGACATGTTTCCAAATAT+TGG | - | chr2_4:3240895-3240914 | None:intergenic | 35.0% | |
| !! | TTTTAAGTAGGATCGTCATG+TGG | - | chr2_4:3240914-3240933 | None:intergenic | 35.0% |
| ACTATTGATGTAACTGCACT+TGG | - | chr2_4:3241070-3241089 | None:intergenic | 35.0% | |
| GCAGTTACATCAATAGTTGA+TGG | + | chr2_4:3241073-3241092 | Msa0308820:CDS | 35.0% | |
| TTTAGCATCAAAATCGCTGT+TGG | - | chr2_4:3241336-3241355 | None:intergenic | 35.0% | |
| AATGCTGATATGCCTTTCAA+TGG | + | chr2_4:3241820-3241839 | Msa0308820:CDS | 35.0% | |
| CAAAGAAGCTATGATTTCAC+TGG | + | chr2_4:3242048-3242067 | Msa0308820:CDS | 35.0% | |
| !! | ATTTCACTGGTGTTGTATCT+TGG | + | chr2_4:3242061-3242080 | Msa0308820:CDS | 35.0% |
| GAGAAGAATGACATCACATT+TGG | - | chr2_4:3242094-3242113 | None:intergenic | 35.0% | |
| TCACTGATGTCAAGTTTATG+TGG | - | chr2_4:3242126-3242145 | None:intergenic | 35.0% | |
| !! | CGTGTTATTTCATCTTTACG+TGG | + | chr2_4:3242156-3242175 | Msa0308820:CDS | 35.0% |
| TTTCAGCTTATGAGAGTCTA+TGG | + | chr2_4:3242336-3242355 | Msa0308820:intron | 35.0% | |
| AAGTTGCTCGTGTATACATT+GGG | + | chr2_4:3242400-3242419 | Msa0308820:CDS | 35.0% | |
| TCAGCAAATCCTTCATTTGT+AGG | - | chr2_4:3242721-3242740 | None:intergenic | 35.0% | |
| TTTGCTGGATATTCCAAAGA+AGG | + | chr2_4:3242792-3242811 | Msa0308820:CDS | 35.0% | |
| ! | AATGAGTTTTTGTTGAGCCT+TGG | - | chr2_4:3243018-3243037 | None:intergenic | 35.0% |
| !! | TCTCGACAATGAATTTGCTA+AGG | + | chr2_4:3243043-3243062 | Msa0308820:CDS | 35.0% |
| !!! | CACTTCAGAGAAGTTTTGAA+TGG | + | chr2_4:3243261-3243280 | Msa0308820:CDS | 35.0% |
| TCTATGGCTTGAATCATCTT+TGG | - | chr2_4:3243318-3243337 | None:intergenic | 35.0% | |
| ATATCCTAGCATGTCATCTA+TGG | - | chr2_4:3243334-3243353 | None:intergenic | 35.0% | |
| CTGAATTTCTTCAAAAGCTC+TGG | - | chr2_4:3243363-3243382 | None:intergenic | 35.0% | |
| ! | GTGAAAATAGTAATGGGAAG+GGG | - | chr2_4:3243608-3243627 | None:intergenic | 35.0% |
| ! | ACGAAGTTCCGTCTTCATTT+TGG | - | chr2_4:3238668-3238687 | None:intergenic | 40.0% |
| TTCTCAACTCAAGCAGCTTT+GGG | + | chr2_4:3238886-3238905 | Msa0308820:CDS | 40.0% | |
| CTTGCTGATAACAAACGACA+AGG | + | chr2_4:3238911-3238930 | Msa0308820:CDS | 40.0% | |
| TGACGCAGACACATTGATAT+TGG | + | chr2_4:3239264-3239283 | Msa0308820:intron | 40.0% | |
| TCGTTCATTGACATACATCG+CGG | + | chr2_4:3239337-3239356 | Msa0308820:intron | 40.0% | |
| GTTAAACCACCTGTGATTGA+AGG | + | chr2_4:3239759-3239778 | Msa0308820:CDS | 40.0% | |
| TCTAATCCTTCAATCACAGG+TGG | - | chr2_4:3239768-3239787 | None:intergenic | 40.0% | |
| CTAACCATTCACTTCAGATG+GGG | - | chr2_4:3239930-3239949 | None:intergenic | 40.0% | |
| GAGTTAGGTAGAAATGGTTG+AGG | - | chr2_4:3240051-3240070 | None:intergenic | 40.0% | |
| ! | TTTGAGGTGAACCATGAGTT+AGG | - | chr2_4:3240066-3240085 | None:intergenic | 40.0% |
| CCACAAAAAAGCCTACAACT+AGG | - | chr2_4:3240164-3240183 | None:intergenic | 40.0% | |
| !!! | CCTAGTTGTAGGCTTTTTTG+TGG | + | chr2_4:3240161-3240180 | Msa0308820:intron | 40.0% |
| !!! | TTGTAGGCTTTTTTGTGGCA+AGG | + | chr2_4:3240166-3240185 | Msa0308820:intron | 40.0% |
| GTTTAACAAGTTGTTGGTGC+TGG | + | chr2_4:3240214-3240233 | Msa0308820:intron | 40.0% | |
| GTTTCTTAACATGTGCCCTA+AGG | + | chr2_4:3240468-3240487 | Msa0308820:intron | 40.0% | |
| !! | AGTGTTAACTTGTGCCCTTA+GGG | - | chr2_4:3240486-3240505 | None:intergenic | 40.0% |
| GAATGGAAATGGAAATGGGA+GGG | - | chr2_4:3240845-3240864 | None:intergenic | 40.0% | |
| TGAATGGAAATGGAAATGGG+AGG | - | chr2_4:3240846-3240865 | None:intergenic | 40.0% | |
| ATTGATGTAACTGCACTTGG+AGG | - | chr2_4:3241067-3241086 | None:intergenic | 40.0% | |
| TACTGAGAGACTAAAACCCT+TGG | + | chr2_4:3241111-3241130 | Msa0308820:CDS | 40.0% | |
| ! | CAAATGCCACTTACTAGCAA+CGG | - | chr2_4:3241169-3241188 | None:intergenic | 40.0% |
| ! | AAATCGCTGTTGGTCTGAAA+GGG | - | chr2_4:3241326-3241345 | None:intergenic | 40.0% |
| ! | AAAATCGCTGTTGGTCTGAA+AGG | - | chr2_4:3241327-3241346 | None:intergenic | 40.0% |
| !! | CGATTTTGATGCTAAACCCA+TGG | + | chr2_4:3241340-3241359 | Msa0308820:CDS | 40.0% |
| GCTTCTTGGTCAATACTCTA+CGG | + | chr2_4:3241367-3241386 | Msa0308820:CDS | 40.0% | |
| CTTCTTGGTCAATACTCTAC+GGG | + | chr2_4:3241368-3241387 | Msa0308820:CDS | 40.0% | |
| CAATAGCAATTCAACCAACC+TGG | - | chr2_4:3241434-3241453 | None:intergenic | 40.0% | |
| AATCTATCTGTTGTAGGCTC+TGG | - | chr2_4:3241576-3241595 | None:intergenic | 40.0% | |
| ACAGTCAGAAAAACATGGTG+TGG | + | chr2_4:3241661-3241680 | Msa0308820:intron | 40.0% | |
| CAGTCAGAAAAACATGGTGT+GGG | + | chr2_4:3241662-3241681 | Msa0308820:intron | 40.0% | |
| TTAACAGCTATCGTGTTTCC+CGG | - | chr2_4:3241802-3241821 | None:intergenic | 40.0% | |
| AAAGTTGTCAGGCCATTGAA+AGG | - | chr2_4:3241835-3241854 | None:intergenic | 40.0% | |
| ! | TTCAATGGCCTGACAACTTT+TGG | + | chr2_4:3241835-3241854 | Msa0308820:CDS | 40.0% |
| ATGAACCTCCAAAAGTTGTC+AGG | - | chr2_4:3241846-3241865 | None:intergenic | 40.0% | |
| GTTGGATGAAGTAACAATCG+TGG | + | chr2_4:3241987-3242006 | Msa0308820:CDS | 40.0% | |
| ! | TTGTGTCCTTTGTTTCTCTC+CGG | - | chr2_4:3242031-3242050 | None:intergenic | 40.0% |
| TTCATCTTTACGTGGCAATG+AGG | + | chr2_4:3242164-3242183 | Msa0308820:CDS | 40.0% | |
| ATGTATACACGAGCAACTTC+AGG | - | chr2_4:3242399-3242418 | None:intergenic | 40.0% | |
| GAAGTTGCTCGTGTATACAT+TGG | + | chr2_4:3242399-3242418 | Msa0308820:CDS | 40.0% | |
| !! | AAGGATTTGCTGATCCACTA+GGG | + | chr2_4:3242728-3242747 | Msa0308820:CDS | 40.0% |
| ! | TCGAAGAGATTTTTCCCTAG+TGG | - | chr2_4:3242745-3242764 | None:intergenic | 40.0% |
| AGGGAAAAATCTCTTCGAGA+AGG | + | chr2_4:3242747-3242766 | Msa0308820:CDS | 40.0% | |
| TTGGCATCTCCTTCTTAAGA+TGG | - | chr2_4:3242980-3242999 | None:intergenic | 40.0% | |
| AAGGAGATGCCAACAATGAT+GGG | + | chr2_4:3242987-3243006 | Msa0308820:CDS | 40.0% | |
| AAAGTAGGCAAAAGTGAAGG+TGG | - | chr2_4:3243077-3243096 | None:intergenic | 40.0% | |
| !! | ACCTTCACTTTTGCCTACTT+TGG | + | chr2_4:3243076-3243095 | Msa0308820:CDS | 40.0% |
| ACCAAAGTAGGCAAAAGTGA+AGG | - | chr2_4:3243080-3243099 | None:intergenic | 40.0% | |
| !! | AGGGGTATCTTCCTTTCTTA+AGG | - | chr2_4:3243590-3243609 | None:intergenic | 40.0% |
| GTTCTCAACTCAAGCAGCTT+TGG | + | chr2_4:3238885-3238904 | Msa0308820:CDS | 45.0% | |
| AGAGTTCGTTACTGCTATGC+AGG | + | chr2_4:3238949-3238968 | Msa0308820:CDS | 45.0% | |
| CGTTCATTGACATACATCGC+GGG | + | chr2_4:3239338-3239357 | Msa0308820:intron | 45.0% | |
| ! | TCTACCCCATCTGAAGTGAA+TGG | + | chr2_4:3239923-3239942 | Msa0308820:CDS | 45.0% |
| !! | CAGTGTTAACTTGTGCCCTT+AGG | - | chr2_4:3240487-3240506 | None:intergenic | 45.0% |
| GGAAATGGGAGGGCAAAATA+AGG | - | chr2_4:3240808-3240827 | None:intergenic | 45.0% | |
| GGGAGGGCAAAATAAGGAAA+TGG | - | chr2_4:3240829-3240848 | None:intergenic | 45.0% | |
| GGAAATGGGAGGGCAAAATA+AGG | - | chr2_4:3240808-3240827 | None:intergenic | 45.0% | |
| GTATCTCCGTTGCTAGTAAG+TGG | + | chr2_4:3241160-3241179 | Msa0308820:intron | 45.0% | |
| AAACCCATGGTCATGCTTCT+TGG | + | chr2_4:3241353-3241372 | Msa0308820:CDS | 45.0% | |
| ! | TGACCAAGAAGCATGACCAT+GGG | - | chr2_4:3241359-3241378 | None:intergenic | 45.0% |
| ! | TTGACCAAGAAGCATGACCA+TGG | - | chr2_4:3241360-3241379 | None:intergenic | 45.0% |
| TGATGATTGCGGGGCATAAT+TGG | + | chr2_4:3241495-3241514 | Msa0308820:intron | 45.0% | |
| GATGATTGCGGGGCATAATT+GGG | + | chr2_4:3241496-3241515 | Msa0308820:intron | 45.0% | |
| ! | TGTAACTCAGGAGCACACAT+TGG | + | chr2_4:3241549-3241568 | Msa0308820:intron | 45.0% |
| ! | GTAACTCAGGAGCACACATT+GGG | + | chr2_4:3241550-3241569 | Msa0308820:intron | 45.0% |
| !! | TCCTGATGAGAGGAGTATTC+CGG | + | chr2_4:3241780-3241799 | Msa0308820:CDS | 45.0% |
| ! | AATGGCCTGACAACTTTTGG+AGG | + | chr2_4:3241838-3241857 | Msa0308820:CDS | 45.0% |
| TCCTATCCGGAGAGAAACAA+AGG | + | chr2_4:3242022-3242041 | Msa0308820:CDS | 45.0% | |
| ! | TCCTTTGTTTCTCTCCGGAT+AGG | - | chr2_4:3242026-3242045 | None:intergenic | 45.0% |
| CAATGAGGACAAGATACGTG+TGG | + | chr2_4:3242179-3242198 | Msa0308820:CDS | 45.0% | |
| !! | GAGTCTATGGAGCATTGATG+TGG | + | chr2_4:3242349-3242368 | Msa0308820:CDS | 45.0% |
| TGCTCGTGTATACATTGGGT+AGG | + | chr2_4:3242404-3242423 | Msa0308820:intron | 45.0% | |
| !! | GAAGGATTTGCTGATCCACT+AGG | + | chr2_4:3242727-3242746 | Msa0308820:CDS | 45.0% |
| GAAGGAACAGAACGATCTGT+TGG | + | chr2_4:3242765-3242784 | Msa0308820:CDS | 45.0% | |
| CAAAGAAGGCTTGTGATCGT+CGG | + | chr2_4:3242806-3242825 | Msa0308820:CDS | 45.0% | |
| AAAGAAGGCTTGTGATCGTC+GGG | + | chr2_4:3242807-3242826 | Msa0308820:CDS | 45.0% | |
| GAAGGAGATGCCAACAATGA+TGG | + | chr2_4:3242986-3243005 | Msa0308820:CDS | 45.0% | |
| !! | TTGGCTTTGCCCATCATTGT+TGG | - | chr2_4:3242999-3243018 | None:intergenic | 45.0% |
| !! | AACAATGATGGGCAAAGCCA+AGG | + | chr2_4:3242998-3243017 | Msa0308820:CDS | 45.0% |
| !! | AGAGAGTATCATCTACCACC+TGG | + | chr2_4:3243219-3243238 | Msa0308820:CDS | 45.0% |
| CAAGCCATAGATGACATGCT+AGG | + | chr2_4:3243327-3243346 | Msa0308820:CDS | 45.0% | |
| TTGGTTTCGCTTGCACAAGC+AGG | + | chr2_4:3239058-3239077 | Msa0308820:CDS | 50.0% | |
| ! | TATAGGCTGGTCCTGATGAG+AGG | + | chr2_4:3241770-3241789 | Msa0308820:intron | 50.0% |
| !! | CCTGATGAGAGGAGTATTCC+GGG | + | chr2_4:3241781-3241800 | Msa0308820:CDS | 50.0% |
| GTAACAATCGTGGACACTCC+TGG | + | chr2_4:3241997-3242016 | Msa0308820:CDS | 50.0% | |
| !! | GGAGCATTGATGTGGTCTCT+AGG | + | chr2_4:3242357-3242376 | Msa0308820:CDS | 50.0% |
| CGATCTGTTGGCAGATTTGC+TGG | + | chr2_4:3242777-3242796 | Msa0308820:CDS | 50.0% | |
| CGACGATCACAAGCCTTCTT+TGG | - | chr2_4:3242808-3242827 | None:intergenic | 50.0% | |
| GTAGGCAAAAGTGAAGGTGG+AGG | - | chr2_4:3243074-3243093 | None:intergenic | 50.0% | |
| ! | TACCACCTGGTGATTTTCCC+AGG | + | chr2_4:3243232-3243251 | Msa0308820:CDS | 50.0% |
| ! | ACCACCTGGTGATTTTCCCA+GGG | + | chr2_4:3243233-3243252 | Msa0308820:CDS | 50.0% |
| TCAACCCTGGGAAAATCACC+AGG | - | chr2_4:3243240-3243259 | None:intergenic | 50.0% | |
| !! | TCTCTGAAGTGCTCAACCCT+GGG | - | chr2_4:3243252-3243271 | None:intergenic | 50.0% |
| !! | TTCTCTGAAGTGCTCAACCC+TGG | - | chr2_4:3243253-3243272 | None:intergenic | 50.0% |
| CCCGGAATACTCCTCTCATC+AGG | - | chr2_4:3241784-3241803 | None:intergenic | 55.0% | |
| GACACTCCTGGTGTCCTATC+CGG | + | chr2_4:3242009-3242028 | Msa0308820:CDS | 55.0% | |
| TTCTCTCCGGATAGGACACC+AGG | - | chr2_4:3242018-3242037 | None:intergenic | 55.0% | |
| AAGGCTTGTGATCGTCGGGT+AGG | + | chr2_4:3242811-3242830 | Msa0308820:intron | 55.0% | |
| ACCCTGGGAAAATCACCAGG+TGG | - | chr2_4:3243237-3243256 | None:intergenic | 55.0% | |
| GATGGAGACGGACGCATCAG+TGG | + | chr2_4:3238821-3238840 | Msa0308820:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_4 | gene | 3238620 | 3243627 | 3238620 | ID=Msa0308820;Name=Msa0308820 |
| chr2_4 | mRNA | 3238620 | 3243627 | 3238620 | ID=Msa0308820-mRNA-1;Parent=Msa0308820;Name=Msa0308820-mRNA-1;_AED=0.09;_eAED=0.09;_QI=50|0.92|0.93|1|1|1|15|229|551 |
| chr2_4 | exon | 3238620 | 3238739 | 3238620 | ID=Msa0308820-mRNA-1:exon:934;Parent=Msa0308820-mRNA-1 |
| chr2_4 | exon | 3238822 | 3238970 | 3238822 | ID=Msa0308820-mRNA-1:exon:935;Parent=Msa0308820-mRNA-1 |
| chr2_4 | exon | 3239058 | 3239115 | 3239058 | ID=Msa0308820-mRNA-1:exon:936;Parent=Msa0308820-mRNA-1 |
| chr2_4 | exon | 3239745 | 3239800 | 3239745 | ID=Msa0308820-mRNA-1:exon:937;Parent=Msa0308820-mRNA-1 |
| chr2_4 | exon | 3239902 | 3239944 | 3239902 | ID=Msa0308820-mRNA-1:exon:938;Parent=Msa0308820-mRNA-1 |
| chr2_4 | exon | 3240037 | 3240098 | 3240037 | ID=Msa0308820-mRNA-1:exon:939;Parent=Msa0308820-mRNA-1 |
| chr2_4 | exon | 3241061 | 3241174 | 3241061 | ID=Msa0308820-mRNA-1:exon:940;Parent=Msa0308820-mRNA-1 |
| chr2_4 | exon | 3241332 | 3241434 | 3241332 | ID=Msa0308820-mRNA-1:exon:941;Parent=Msa0308820-mRNA-1 |
| chr2_4 | exon | 3241559 | 3241608 | 3241559 | ID=Msa0308820-mRNA-1:exon:942;Parent=Msa0308820-mRNA-1 |
| chr2_4 | exon | 3241775 | 3241903 | 3241775 | ID=Msa0308820-mRNA-1:exon:943;Parent=Msa0308820-mRNA-1 |
| chr2_4 | exon | 3241985 | 3242236 | 3241985 | ID=Msa0308820-mRNA-1:exon:944;Parent=Msa0308820-mRNA-1 |
| chr2_4 | exon | 3242342 | 3242421 | 3242342 | ID=Msa0308820-mRNA-1:exon:945;Parent=Msa0308820-mRNA-1 |
| chr2_4 | exon | 3242702 | 3242828 | 3242702 | ID=Msa0308820-mRNA-1:exon:946;Parent=Msa0308820-mRNA-1 |
| chr2_4 | exon | 3242921 | 3243097 | 3242921 | ID=Msa0308820-mRNA-1:exon:947;Parent=Msa0308820-mRNA-1 |
| chr2_4 | exon | 3243213 | 3243627 | 3243213 | ID=Msa0308820-mRNA-1:exon:948;Parent=Msa0308820-mRNA-1 |
| chr2_4 | five_prime_UTR | 3238620 | 3238669 | 3238620 | ID=Msa0308820-mRNA-1:five_prime_utr;Parent=Msa0308820-mRNA-1 |
| chr2_4 | CDS | 3238670 | 3238739 | 3238670 | ID=Msa0308820-mRNA-1:cds;Parent=Msa0308820-mRNA-1 |
| chr2_4 | CDS | 3238822 | 3238970 | 3238822 | ID=Msa0308820-mRNA-1:cds;Parent=Msa0308820-mRNA-1 |
| chr2_4 | CDS | 3239058 | 3239115 | 3239058 | ID=Msa0308820-mRNA-1:cds;Parent=Msa0308820-mRNA-1 |
| chr2_4 | CDS | 3239745 | 3239800 | 3239745 | ID=Msa0308820-mRNA-1:cds;Parent=Msa0308820-mRNA-1 |
| chr2_4 | CDS | 3239902 | 3239944 | 3239902 | ID=Msa0308820-mRNA-1:cds;Parent=Msa0308820-mRNA-1 |
| chr2_4 | CDS | 3240037 | 3240098 | 3240037 | ID=Msa0308820-mRNA-1:cds;Parent=Msa0308820-mRNA-1 |
| chr2_4 | CDS | 3241061 | 3241174 | 3241061 | ID=Msa0308820-mRNA-1:cds;Parent=Msa0308820-mRNA-1 |
| chr2_4 | CDS | 3241332 | 3241434 | 3241332 | ID=Msa0308820-mRNA-1:cds;Parent=Msa0308820-mRNA-1 |
| chr2_4 | CDS | 3241559 | 3241608 | 3241559 | ID=Msa0308820-mRNA-1:cds;Parent=Msa0308820-mRNA-1 |
| chr2_4 | CDS | 3241775 | 3241903 | 3241775 | ID=Msa0308820-mRNA-1:cds;Parent=Msa0308820-mRNA-1 |
| chr2_4 | CDS | 3241985 | 3242236 | 3241985 | ID=Msa0308820-mRNA-1:cds;Parent=Msa0308820-mRNA-1 |
| chr2_4 | CDS | 3242342 | 3242421 | 3242342 | ID=Msa0308820-mRNA-1:cds;Parent=Msa0308820-mRNA-1 |
| chr2_4 | CDS | 3242702 | 3242828 | 3242702 | ID=Msa0308820-mRNA-1:cds;Parent=Msa0308820-mRNA-1 |
| chr2_4 | CDS | 3242921 | 3243097 | 3242921 | ID=Msa0308820-mRNA-1:cds;Parent=Msa0308820-mRNA-1 |
| chr2_4 | CDS | 3243213 | 3243398 | 3243213 | ID=Msa0308820-mRNA-1:cds;Parent=Msa0308820-mRNA-1 |
| chr2_4 | three_prime_UTR | 3243399 | 3243627 | 3243399 | ID=Msa0308820-mRNA-1:three_prime_utr;Parent=Msa0308820-mRNA-1 |
| Gene Sequence |
| Protein sequence |
