AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1368750


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1368750 MtrunA17_Chr3g0136871 97.778 180 4 0 1 180 1 180 1.33e-128 358
Msa1368750 MtrunA17_Chr7g0256441 87.273 165 4 1 1 165 1 148 1.94e-99 283
Msa1368750 MtrunA17_Chr1g0150131 66.897 145 44 2 7 147 4 148 8.59e-67 202
Msa1368750 MtrunA17_Chr8g0360371 49.630 135 59 4 12 142 5 134 1.89e-37 130
Msa1368750 MtrunA17_Chr4g0041811 49.587 121 60 1 11 131 16 135 2.92e-36 125
Msa1368750 MtrunA17_Chr2g0317231 52.137 117 53 2 12 128 10 123 8.20e-35 129
Msa1368750 MtrunA17_Chr4g0039721 39.459 185 93 6 1 176 1 175 1.78e-34 119
Msa1368750 MtrunA17_Chr2g0331181 44.928 138 68 5 23 157 23 155 3.14e-34 119
Msa1368750 MtrunA17_Chr2g0324721 43.210 162 77 5 10 159 2 160 6.51e-34 119
Msa1368750 MtrunA17_Chr4g0062341 38.122 181 92 7 8 179 7 176 5.28e-33 116
Msa1368750 MtrunA17_Chr4g0062311 38.122 181 92 7 8 179 7 176 5.28e-33 116
Msa1368750 MtrunA17_Chr6g0458331 50.467 107 49 3 23 128 33 136 1.28e-30 109
Msa1368750 MtrunA17_Chr2g0319611 50.926 108 50 3 24 129 23 129 1.97e-30 111
Msa1368750 MtrunA17_Chr4g0040291 41.420 169 82 4 24 179 22 186 5.06e-30 108
Msa1368750 MtrunA17_Chr2g0324711 41.379 174 84 6 12 173 7 174 7.20e-29 109
Msa1368750 MtrunA17_Chr8g0385021 41.104 163 76 4 14 158 11 171 1.89e-27 104
Msa1368750 MtrunA17_Chr4g0073901 40.708 113 67 0 15 127 17 129 3.69e-27 101
Msa1368750 MtrunA17_Chr2g0323021 35.811 148 86 4 14 157 12 154 1.32e-24 95.5
Msa1368750 MtrunA17_Chr8g0385031 45.614 114 60 2 14 127 11 122 2.92e-24 96.3
Msa1368750 MtrunA17_Chr4g0073921 40.496 121 67 3 12 128 11 130 9.75e-24 94.4
Msa1368750 MtrunA17_Chr8g0385041 40.000 115 65 3 29 143 27 137 4.23e-21 88.2
Msa1368750 MtrunA17_Chr1g0188981 36.735 98 61 1 31 127 32 129 1.70e-20 84.0
Msa1368750 MtrunA17_Chr3g0127521 44.444 99 53 2 63 160 75 172 1.51e-19 83.6
Msa1368750 MtrunA17_Chr8g0335531 32.500 160 93 5 5 155 2 155 8.31e-19 79.7
Msa1368750 MtrunA17_Chr8g0335571 39.344 122 66 4 10 129 7 122 1.11e-18 79.3
Msa1368750 MtrunA17_Chr4g0064041 38.144 97 60 0 31 127 194 290 1.82e-18 81.3
Msa1368750 MtrunA17_Chr4g0064041 34.058 138 83 2 12 144 8 142 2.03e-17 78.6
Msa1368750 MtrunA17_Chr8g0387804 36.792 106 65 2 22 127 24 127 2.68e-18 76.6
Msa1368750 MtrunA17_Chr6g0481491 36.441 118 69 3 17 134 18 129 6.41e-17 75.1
Msa1368750 MtrunA17_Chr6g0453921 31.818 176 98 6 3 170 8 169 7.11e-17 74.3
Msa1368750 MtrunA17_Chr2g0306461 41.346 104 58 3 24 127 25 125 1.11e-16 74.3
Msa1368750 MtrunA17_Chr6g0459441 40.385 104 57 3 24 127 23 121 1.27e-16 73.6
Msa1368750 MtrunA17_Chr5g0394321 28.571 140 90 3 48 180 44 180 1.42e-16 73.6
Msa1368750 MtrunA17_Chr4g0033131 31.481 162 94 5 22 179 23 171 1.94e-16 72.8
Msa1368750 MtrunA17_Chr4g0033531 31.481 162 94 5 22 179 23 171 1.94e-16 72.8
Msa1368750 MtrunA17_Chr4g0064031 36.458 96 59 2 24 117 25 120 3.69e-16 72.0
Msa1368750 MtrunA17_Chr1g0205701 28.986 138 85 2 48 174 43 178 7.02e-16 71.6
Msa1368750 MtrunA17_Chr1g0196801 30.357 168 97 6 23 179 19 177 2.34e-15 70.1
Msa1368750 MtrunA17_Chr7g0253631 34.109 129 75 3 8 131 2 125 2.35e-15 71.6
Msa1368750 MtrunA17_Chr8g0379081 44.578 83 38 2 74 156 1 75 2.99e-15 68.6
Msa1368750 MtrunA17_Chr3g0132431 37.500 96 58 2 47 142 41 134 3.74e-14 67.0
Msa1368750 MtrunA17_Chr7g0253641 33.600 125 72 4 13 132 7 125 4.36e-14 67.8
Msa1368750 MtrunA17_Chr3g0132411 39.506 81 48 1 47 127 80 159 1.11e-13 65.5
Msa1368750 MtrunA17_Chr7g0253761 29.299 157 101 3 8 159 2 153 1.25e-13 65.5
Msa1368750 MtrunA17_Chr3g0132441 40.741 81 47 1 47 127 41 120 1.41e-13 65.9
Msa1368750 MtrunA17_Chr6g0483981 32.468 154 97 3 12 159 8 160 3.49e-13 66.6
Msa1368750 MtrunA17_Chr2g0289741 31.818 132 83 3 49 179 44 169 4.89e-13 63.9
Msa1368750 MtrunA17_Chr5g0440711 31.111 135 80 5 12 144 14 137 4.31e-12 60.8
Msa1368750 MtrunA17_Chr1g0185541 38.235 68 42 0 60 127 3 70 4.59e-12 58.9
Msa1368750 MtrunA17_Chr3g0132701 36.190 105 61 3 24 127 23 122 6.43e-12 61.6
Msa1368750 MtrunA17_Chr6g0453801 33.333 129 72 5 7 127 9 131 1.95e-11 59.7
Msa1368750 MtrunA17_Chr3g0132511 35.238 105 62 3 24 127 23 122 3.86e-11 59.7
Msa1368750 MtrunA17_Chr8g0380901 36.364 77 48 1 49 125 43 118 5.74e-11 57.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1368750 AT2G25060.1 56.442 163 68 2 11 172 15 175 2.10e-61 188
Msa1368750 AT4G31840.1 54.386 171 69 4 8 172 2 169 7.53e-58 179
Msa1368750 AT5G25090.1 47.222 180 84 3 6 174 4 183 2.22e-51 163
Msa1368750 AT4G30590.1 55.556 126 51 1 12 132 8 133 3.53e-48 155
Msa1368750 AT5G57920.1 54.545 121 54 1 22 141 18 138 3.15e-46 150
Msa1368750 AT5G57920.3 54.545 121 54 1 22 141 50 170 3.53e-46 151
Msa1368750 AT5G57920.2 54.622 119 53 1 24 141 19 137 1.29e-45 148
Msa1368750 AT2G23990.1 48.077 156 68 3 1 155 1 144 4.51e-42 140
Msa1368750 AT2G23990.2 42.857 175 68 4 1 155 1 163 1.20e-37 129
Msa1368750 AT1G48940.1 40.116 172 97 4 11 180 10 177 4.15e-34 119
Msa1368750 AT3G18590.1 50.420 119 54 3 12 128 12 127 1.17e-33 118
Msa1368750 AT3G20570.1 34.884 172 83 3 12 156 15 184 2.47e-32 115
Msa1368750 AT4G27520.1 44.595 148 69 3 12 159 16 150 3.43e-31 115
Msa1368750 AT5G53870.2 44.079 152 68 5 11 155 7 148 3.59e-30 113
Msa1368750 AT5G53870.1 44.079 152 68 5 11 155 7 148 4.26e-30 113
Msa1368750 AT5G14345.1 46.429 112 57 2 36 146 24 133 3.11e-29 105
Msa1368750 AT4G28365.1 37.975 158 84 6 12 158 11 165 3.25e-27 102
Msa1368750 AT4G32490.1 39.416 137 75 4 3 134 2 135 9.69e-27 101
Msa1368750 AT1G79800.1 44.762 105 54 3 25 128 32 133 3.70e-26 99.4
Msa1368750 AT1G64640.1 33.571 140 89 2 4 140 6 144 1.23e-22 90.1
Msa1368750 AT2G31050.1 36.765 136 82 2 10 145 11 142 1.42e-21 87.4
Msa1368750 AT2G32300.1 35.417 144 83 4 18 160 17 151 2.85e-20 85.5
Msa1368750 AT2G32300.2 35.417 144 83 4 18 160 47 181 5.06e-20 85.1
Msa1368750 AT2G26720.1 32.353 136 88 2 10 145 11 142 5.49e-20 83.6
Msa1368750 AT5G07475.1 29.412 187 114 7 6 180 3 183 1.76e-18 79.3
Msa1368750 AT3G60270.1 37.374 99 57 2 31 129 29 122 5.55e-16 72.4
Msa1368750 AT5G26330.1 33.721 86 57 0 49 134 43 128 4.08e-15 70.1
Msa1368750 AT1G72230.1 37.755 98 51 2 39 127 21 117 5.90e-15 69.7
Msa1368750 AT3G17675.1 30.645 124 75 3 10 127 9 127 1.76e-14 67.0
Msa1368750 AT5G20230.1 31.034 116 74 2 31 141 28 142 1.59e-13 66.2
Msa1368750 AT1G45063.2 32.812 128 81 3 2 128 4 127 3.97e-13 66.2
Msa1368750 AT1G45063.2 34.694 98 61 2 31 127 152 247 9.65e-13 65.1
Msa1368750 AT1G45063.1 32.812 128 81 3 2 128 4 127 6.59e-13 66.2
Msa1368750 AT1G45063.1 34.694 98 61 2 31 127 152 247 1.57e-12 65.1
Msa1368750 AT2G27035.1 28.105 153 90 5 29 180 30 163 6.80e-13 63.5
Msa1368750 AT4G01380.1 34.545 110 68 4 35 142 79 186 8.06e-13 64.3
Msa1368750 AT3G27200.1 38.095 84 50 2 46 128 40 122 1.41e-12 63.2
Msa1368750 AT3G60280.1 37.374 99 57 3 31 129 27 120 1.43e-12 63.9
Msa1368750 AT2G44790.1 40.964 83 46 2 49 129 45 126 7.48e-12 61.6
Msa1368750 AT1G22480.1 39.024 82 49 1 54 135 41 121 6.21e-11 58.5

Find 62 sgRNAs with CRISPR-Local

Find 154 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATGAATCACCGCACCTAATT+AGG 0.210319 tig0018650:-197947 Msa1368750:exon
AACTGGACTTGTGACTGTTC+TGG 0.274010 tig0018650:-198001 Msa1368750:CDS
TTGTTCTTGTTCCTTCTCTT+TGG 0.278533 tig0018650:-198545 Msa1368750:CDS
AACTTCACTATATCCTAATT+AGG 0.307719 tig0018650:+197934 None:intergenic
AATAATAACTTGCTTGATAT+AGG 0.319142 tig0018650:-197789 Msa1368750:three_prime_UTR
CCCATCATTGTAATGTTCAA+TGG 0.374125 tig0018650:+198224 None:intergenic
CCATCATTGTAATGTTCAAT+GGG 0.379061 tig0018650:+198225 None:intergenic
GGGACTGTTGGCTATTTATG+TGG 0.381502 tig0018650:-197980 Msa1368750:CDS
GCTCCACTGATGAAGTAAAA+TGG 0.384841 tig0018650:+198171 None:intergenic
ACTGGACTTGTGACTGTTCT+GGG 0.401738 tig0018650:-198000 Msa1368750:CDS
ATTGTATTATTATTTATAGA+TGG 0.403303 tig0018650:+198709 None:intergenic
CTCTGCAGCTAAGGAACTAT+TGG 0.408413 tig0018650:-198519 Msa1368750:CDS
CCCATTGAACATTACAATGA+TGG 0.412359 tig0018650:-198225 Msa1368750:CDS
TTTGCATTGATCTGGTTCCT+TGG 0.413913 tig0018650:+198683 None:intergenic
AGGGGTGGTTTGCATTGATC+TGG 0.415179 tig0018650:+198675 None:intergenic
TTCAAAGTCGGCGATCATCT+TGG 0.440071 tig0018650:-198419 Msa1368750:intron
TGTCACTTTGCAAGCACAAA+GGG 0.448828 tig0018650:+198656 None:intergenic
AAGTTATTATTCATAAGCTT+TGG 0.459492 tig0018650:+197801 None:intergenic
TACTTCATCAGTGGAGCAAA+GGG 0.460490 tig0018650:-198165 Msa1368750:CDS
GGACCTTCTTCCAACTCTGC+TGG 0.465938 tig0018650:+198060 None:intergenic
AGTGCGCCGGTGTTGCGAAC+TGG 0.466338 tig0018650:-198018 Msa1368750:CDS
CTTTGGTTTCTCTGCAGCTA+AGG 0.473136 tig0018650:-198528 Msa1368750:CDS
CTGCTAGTTGGTGCAACAGC+TGG 0.474292 tig0018650:+198039 None:intergenic
GGACTGTTGGCTATTTATGT+GGG 0.487905 tig0018650:-197979 Msa1368750:CDS
AGTGAGTCTGCTTCAGATGA+TGG 0.493397 tig0018650:+198467 None:intergenic
TGCACCATCTCCAGCAGAGT+TGG 0.499713 tig0018650:-198070 Msa1368750:CDS
TCTTCCAACTCTGCTGGAGA+TGG 0.500018 tig0018650:+198066 None:intergenic
TGTGACTGTTCTGGGACTGT+TGG 0.507080 tig0018650:-197992 Msa1368750:CDS
AACTCTGCTGGAGATGGTGC+AGG 0.510903 tig0018650:+198072 None:intergenic
TTTGCAGTTTGGAAATATGA+TGG 0.513645 tig0018650:-198309 Msa1368750:intron
AGCAGACTCACTCAACCAAT+GGG 0.514967 tig0018650:-198456 Msa1368750:CDS
AACACCGGCGCACTGCTAGT+TGG 0.529681 tig0018650:+198027 None:intergenic
TCTCCAAAGAAAAGATCCAT+TGG 0.532263 tig0018650:-198102 Msa1368750:CDS
CCATTGAACATTACAATGAT+GGG 0.540182 tig0018650:-198224 Msa1368750:CDS
TTACTTCATCAGTGGAGCAA+AGG 0.544859 tig0018650:-198166 Msa1368750:CDS
AAGCAGACTCACTCAACCAA+TGG 0.548958 tig0018650:-198457 Msa1368750:CDS
TTCTTTCTGATAGCTGAATG+TGG 0.553596 tig0018650:+198613 None:intergenic
GCAAAGGGACACTGTGAGCA+AGG 0.567702 tig0018650:-198150 Msa1368750:CDS
AATAATAATACAATAATCCA+AGG 0.570368 tig0018650:-198700 Msa1368750:five_prime_UTR
CTGATGAAGTAAAATGGTCC+AGG 0.572076 tig0018650:+198177 None:intergenic
CAGTTTGGAAATATGATGGT+GGG 0.580211 tig0018650:-198305 Msa1368750:CDS
TGCACCAACTAGCAGTGCGC+CGG 0.584450 tig0018650:-198031 Msa1368750:CDS
GAAAAGTCTCGTTTCAAAGT+CGG 0.587560 tig0018650:-198431 Msa1368750:CDS
TCTCCAGCAGAGTTGGAAGA+AGG 0.588093 tig0018650:-198063 Msa1368750:CDS
ACAAGTCCAGTTCGCAACAC+CGG 0.589779 tig0018650:+198012 None:intergenic
TTGTCACTTTGCAAGCACAA+AGG 0.591024 tig0018650:+198655 None:intergenic
TGGTGCAGGTGAAACTCCAA+TGG 0.600203 tig0018650:+198086 None:intergenic
GCAGTTTGGAAATATGATGG+TGG 0.604799 tig0018650:-198306 Msa1368750:intron
CACTATATCCTAATTAGGTG+CGG 0.608986 tig0018650:+197939 None:intergenic
AGGCAAGATAGATGCATGGA+AGG 0.615286 tig0018650:-198492 Msa1368750:CDS
CTGCAGAGAAACCAAAGAGA+AGG 0.616684 tig0018650:+198534 None:intergenic
AAGGTAAAGCTAGACAGACC+TGG 0.622619 tig0018650:-198195 Msa1368750:CDS
CATCATTGTAATGTTCAATG+GGG 0.626069 tig0018650:+198226 None:intergenic
GCAGCTAAGGAACTATTGGT+CGG 0.634929 tig0018650:-198515 Msa1368750:CDS
ACTTTGCAAGCACAAAGGGG+TGG 0.644733 tig0018650:+198660 None:intergenic
AGTTCTTGAGAACACAGCCA+TGG 0.674329 tig0018650:+198583 None:intergenic
TCGGAGGCAAGATAGATGCA+TGG 0.675253 tig0018650:-198496 Msa1368750:CDS
AGGACAAAAGCTGATTGTGG+TGG 0.679977 tig0018650:-198130 Msa1368750:CDS
GTCACTTTGCAAGCACAAAG+GGG 0.685393 tig0018650:+198657 None:intergenic
GCTAAGGAACTATTGGTCGG+AGG 0.690687 tig0018650:-198512 Msa1368750:CDS
GCAAGGACAAAAGCTGATTG+TGG 0.718198 tig0018650:-198133 Msa1368750:CDS
TTACAATGATGGGAACACGA+AGG 0.756088 tig0018650:-198214 Msa1368750:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTGTATTATTATTTATAGA+TGG + tig0018650:197724-197743 None:intergenic 10.0%
!! ATTGTATTATTATTTATAGA+TGG + tig0018650:197724-197743 None:intergenic 10.0%
!! AATAATAATACAATAATCCA+AGG - tig0018650:197730-197749 Msa1368750:three_prime_UTR 15.0%
!! TATGAAAAATAACTTGATAT+AGG - tig0018650:198703-198722 Msa1368750:five_prime_UTR 15.0%
!! AATAATAATACAATAATCCA+AGG - tig0018650:197730-197749 Msa1368750:three_prime_UTR 15.0%
!! TATGAAAAATAACTTGATAT+AGG - tig0018650:198703-198722 Msa1368750:five_prime_UTR 15.0%
!!! GATTCATTATTTTTTTCCAA+AGG - tig0018650:198549-198568 Msa1368750:CDS 20.0%
!!! ATATCAAGTTTTTATTCCTT+TGG + tig0018650:198568-198587 None:intergenic 20.0%
!! AAGGAATAAAAACTTGATAT+AGG - tig0018650:198568-198587 Msa1368750:CDS 20.0%
!!! AAAAAATAATGAAGGTATTC+AGG + tig0018650:198609-198628 None:intergenic 20.0%
!! AAGTTATTATTCATAAGCTT+TGG + tig0018650:198632-198651 None:intergenic 20.0%
!!! AATAATAACTTGCTTGATAT+AGG - tig0018650:198641-198660 Msa1368750:five_prime_UTR 20.0%
!!! AAGTTATTTTTCATAAGCTT+TGG + tig0018650:198698-198717 None:intergenic 20.0%
!!! GATTCATTATTTTTTTCCAA+AGG - tig0018650:198549-198568 Msa1368750:CDS 20.0%
!!! ATATCAAGTTTTTATTCCTT+TGG + tig0018650:198568-198587 None:intergenic 20.0%
!! AAGGAATAAAAACTTGATAT+AGG - tig0018650:198568-198587 Msa1368750:CDS 20.0%
!!! AAAAAATAATGAAGGTATTC+AGG + tig0018650:198609-198628 None:intergenic 20.0%
!! AAGTTATTATTCATAAGCTT+TGG + tig0018650:198632-198651 None:intergenic 20.0%
!!! AATAATAACTTGCTTGATAT+AGG - tig0018650:198641-198660 Msa1368750:five_prime_UTR 20.0%
!!! AAGTTATTTTTCATAAGCTT+TGG + tig0018650:198698-198717 None:intergenic 20.0%
! AACTTCACTATATCCTAATT+AGG + tig0018650:198499-198518 None:intergenic 25.0%
!!! AGCTTTGGAAAAAATAATGA+AGG + tig0018650:198617-198636 None:intergenic 25.0%
! AACTTCACTATATCCTAATT+AGG + tig0018650:198499-198518 None:intergenic 25.0%
!!! AGCTTTGGAAAAAATAATGA+AGG + tig0018650:198617-198636 None:intergenic 25.0%
!!! TTTACCTTTGTTTTGCAGTT+TGG - tig0018650:198110-198129 Msa1368750:CDS 30.0%
ATTTCCAAACTGCAAAACAA+AGG + tig0018650:198117-198136 None:intergenic 30.0%
TTTGCAGTTTGGAAATATGA+TGG - tig0018650:198121-198140 Msa1368750:CDS 30.0%
CATCATTGTAATGTTCAATG+GGG + tig0018650:198207-198226 None:intergenic 30.0%
CCATCATTGTAATGTTCAAT+GGG + tig0018650:198208-198227 None:intergenic 30.0%
CCATTGAACATTACAATGAT+GGG - tig0018650:198206-198225 Msa1368750:CDS 30.0%
!! AGCTTTGGAAAAAACAATGA+AGG + tig0018650:198683-198702 None:intergenic 30.0%
!!! TTTACCTTTGTTTTGCAGTT+TGG - tig0018650:198110-198129 Msa1368750:CDS 30.0%
ATTTCCAAACTGCAAAACAA+AGG + tig0018650:198117-198136 None:intergenic 30.0%
TTTGCAGTTTGGAAATATGA+TGG - tig0018650:198121-198140 Msa1368750:CDS 30.0%
CATCATTGTAATGTTCAATG+GGG + tig0018650:198207-198226 None:intergenic 30.0%
CCATCATTGTAATGTTCAAT+GGG + tig0018650:198208-198227 None:intergenic 30.0%
CCATTGAACATTACAATGAT+GGG - tig0018650:198206-198225 Msa1368750:CDS 30.0%
!! AGCTTTGGAAAAAACAATGA+AGG + tig0018650:198683-198702 None:intergenic 30.0%
TTCTTTCTGATAGCTGAATG+TGG + tig0018650:197820-197839 None:intergenic 35.0%
!! TCAGAAAGAAAAAAGCACCA+TGG - tig0018650:197830-197849 Msa1368750:three_prime_UTR 35.0%
TTGTTCTTGTTCCTTCTCTT+TGG - tig0018650:197885-197904 Msa1368750:three_prime_UTR 35.0%
GAAAAGTCTCGTTTCAAAGT+CGG - tig0018650:197999-198018 Msa1368750:CDS 35.0%
AGAAAAAGATGTGTCAGTGA+TGG + tig0018650:198090-198109 None:intergenic 35.0%
CAGTTTGGAAATATGATGGT+GGG - tig0018650:198125-198144 Msa1368750:CDS 35.0%
CCCATTGAACATTACAATGA+TGG - tig0018650:198205-198224 Msa1368750:CDS 35.0%
CCCATCATTGTAATGTTCAA+TGG + tig0018650:198209-198228 None:intergenic 35.0%
TCTCCAAAGAAAAGATCCAT+TGG - tig0018650:198328-198347 Msa1368750:intron 35.0%
! ACTCCAATGGATCTTTTCTT+TGG + tig0018650:198334-198353 None:intergenic 35.0%
CACTATATCCTAATTAGGTG+CGG + tig0018650:198494-198513 None:intergenic 35.0%
TTCTTTCTGATAGCTGAATG+TGG + tig0018650:197820-197839 None:intergenic 35.0%
!! TCAGAAAGAAAAAAGCACCA+TGG - tig0018650:197830-197849 Msa1368750:three_prime_UTR 35.0%
TTGTTCTTGTTCCTTCTCTT+TGG - tig0018650:197885-197904 Msa1368750:three_prime_UTR 35.0%
GAAAAGTCTCGTTTCAAAGT+CGG - tig0018650:197999-198018 Msa1368750:CDS 35.0%
AGAAAAAGATGTGTCAGTGA+TGG + tig0018650:198090-198109 None:intergenic 35.0%
CAGTTTGGAAATATGATGGT+GGG - tig0018650:198125-198144 Msa1368750:CDS 35.0%
CCCATTGAACATTACAATGA+TGG - tig0018650:198205-198224 Msa1368750:CDS 35.0%
CCCATCATTGTAATGTTCAA+TGG + tig0018650:198209-198228 None:intergenic 35.0%
TCTCCAAAGAAAAGATCCAT+TGG - tig0018650:198328-198347 Msa1368750:intron 35.0%
! ACTCCAATGGATCTTTTCTT+TGG + tig0018650:198334-198353 None:intergenic 35.0%
CACTATATCCTAATTAGGTG+CGG + tig0018650:198494-198513 None:intergenic 35.0%
! TTTGCATTGATCTGGTTCCT+TGG + tig0018650:197750-197769 None:intergenic 40.0%
!! TGTCACTTTGCAAGCACAAA+GGG + tig0018650:197777-197796 None:intergenic 40.0%
!! TTGTCACTTTGCAAGCACAA+AGG + tig0018650:197778-197797 None:intergenic 40.0%
GCAGTTTGGAAATATGATGG+TGG - tig0018650:198124-198143 Msa1368750:CDS 40.0%
! TTACAATGATGGGAACACGA+AGG - tig0018650:198216-198235 Msa1368750:CDS 40.0%
CTGATGAAGTAAAATGGTCC+AGG + tig0018650:198256-198275 None:intergenic 40.0%
! GGACCATTTTACTTCATCAG+TGG - tig0018650:198256-198275 Msa1368750:CDS 40.0%
GCTCCACTGATGAAGTAAAA+TGG + tig0018650:198262-198281 None:intergenic 40.0%
TTACTTCATCAGTGGAGCAA+AGG - tig0018650:198264-198283 Msa1368750:CDS 40.0%
TACTTCATCAGTGGAGCAAA+GGG - tig0018650:198265-198284 Msa1368750:CDS 40.0%
! GGACTGTTGGCTATTTATGT+GGG - tig0018650:198451-198470 Msa1368750:CDS 40.0%
ATGAATCACCGCACCTAATT+AGG - tig0018650:198483-198502 Msa1368750:CDS 40.0%
! TTTGCATTGATCTGGTTCCT+TGG + tig0018650:197750-197769 None:intergenic 40.0%
!! TGTCACTTTGCAAGCACAAA+GGG + tig0018650:197777-197796 None:intergenic 40.0%
!! TTGTCACTTTGCAAGCACAA+AGG + tig0018650:197778-197797 None:intergenic 40.0%
GCAGTTTGGAAATATGATGG+TGG - tig0018650:198124-198143 Msa1368750:CDS 40.0%
! TTACAATGATGGGAACACGA+AGG - tig0018650:198216-198235 Msa1368750:CDS 40.0%
CTGATGAAGTAAAATGGTCC+AGG + tig0018650:198256-198275 None:intergenic 40.0%
! GGACCATTTTACTTCATCAG+TGG - tig0018650:198256-198275 Msa1368750:CDS 40.0%
GCTCCACTGATGAAGTAAAA+TGG + tig0018650:198262-198281 None:intergenic 40.0%
TTACTTCATCAGTGGAGCAA+AGG - tig0018650:198264-198283 Msa1368750:CDS 40.0%
TACTTCATCAGTGGAGCAAA+GGG - tig0018650:198265-198284 Msa1368750:CDS 40.0%
! GGACTGTTGGCTATTTATGT+GGG - tig0018650:198451-198470 Msa1368750:CDS 40.0%
ATGAATCACCGCACCTAATT+AGG - tig0018650:198483-198502 Msa1368750:CDS 40.0%
! GTCACTTTGCAAGCACAAAG+GGG + tig0018650:197776-197795 None:intergenic 45.0%
AGTTCTTGAGAACACAGCCA+TGG + tig0018650:197850-197869 None:intergenic 45.0%
CTGCAGAGAAACCAAAGAGA+AGG + tig0018650:197899-197918 None:intergenic 45.0%
! CTTTGGTTTCTCTGCAGCTA+AGG - tig0018650:197902-197921 Msa1368750:three_prime_UTR 45.0%
CTCTGCAGCTAAGGAACTAT+TGG - tig0018650:197911-197930 Msa1368750:three_prime_UTR 45.0%
GCAGCTAAGGAACTATTGGT+CGG - tig0018650:197915-197934 Msa1368750:three_prime_UTR 45.0%
AGGCAAGATAGATGCATGGA+AGG - tig0018650:197938-197957 Msa1368750:three_prime_UTR 45.0%
AGTGAGTCTGCTTCAGATGA+TGG + tig0018650:197966-197985 None:intergenic 45.0%
AAGCAGACTCACTCAACCAA+TGG - tig0018650:197973-197992 Msa1368750:CDS 45.0%
AGCAGACTCACTCAACCAAT+GGG - tig0018650:197974-197993 Msa1368750:CDS 45.0%
! AACGAGACTTTTCTGCCCAT+TGG + tig0018650:197992-198011 None:intergenic 45.0%
TTCAAAGTCGGCGATCATCT+TGG - tig0018650:198011-198030 Msa1368750:CDS 45.0%
AAGGTAAAGCTAGACAGACC+TGG - tig0018650:198235-198254 Msa1368750:CDS 45.0%
GCAAGGACAAAAGCTGATTG+TGG - tig0018650:198297-198316 Msa1368750:CDS 45.0%
AGGACAAAAGCTGATTGTGG+TGG - tig0018650:198300-198319 Msa1368750:CDS 45.0%
AACTGGACTTGTGACTGTTC+TGG - tig0018650:198429-198448 Msa1368750:CDS 45.0%
ACTGGACTTGTGACTGTTCT+GGG - tig0018650:198430-198449 Msa1368750:CDS 45.0%
! GGGACTGTTGGCTATTTATG+TGG - tig0018650:198450-198469 Msa1368750:CDS 45.0%
! GTCACTTTGCAAGCACAAAG+GGG + tig0018650:197776-197795 None:intergenic 45.0%
AGTTCTTGAGAACACAGCCA+TGG + tig0018650:197850-197869 None:intergenic 45.0%
CTGCAGAGAAACCAAAGAGA+AGG + tig0018650:197899-197918 None:intergenic 45.0%
! CTTTGGTTTCTCTGCAGCTA+AGG - tig0018650:197902-197921 Msa1368750:three_prime_UTR 45.0%
CTCTGCAGCTAAGGAACTAT+TGG - tig0018650:197911-197930 Msa1368750:three_prime_UTR 45.0%
GCAGCTAAGGAACTATTGGT+CGG - tig0018650:197915-197934 Msa1368750:three_prime_UTR 45.0%
AGGCAAGATAGATGCATGGA+AGG - tig0018650:197938-197957 Msa1368750:three_prime_UTR 45.0%
AGTGAGTCTGCTTCAGATGA+TGG + tig0018650:197966-197985 None:intergenic 45.0%
AAGCAGACTCACTCAACCAA+TGG - tig0018650:197973-197992 Msa1368750:CDS 45.0%
AGCAGACTCACTCAACCAAT+GGG - tig0018650:197974-197993 Msa1368750:CDS 45.0%
! AACGAGACTTTTCTGCCCAT+TGG + tig0018650:197992-198011 None:intergenic 45.0%
TTCAAAGTCGGCGATCATCT+TGG - tig0018650:198011-198030 Msa1368750:CDS 45.0%
AAGGTAAAGCTAGACAGACC+TGG - tig0018650:198235-198254 Msa1368750:CDS 45.0%
GCAAGGACAAAAGCTGATTG+TGG - tig0018650:198297-198316 Msa1368750:CDS 45.0%
AGGACAAAAGCTGATTGTGG+TGG - tig0018650:198300-198319 Msa1368750:CDS 45.0%
AACTGGACTTGTGACTGTTC+TGG - tig0018650:198429-198448 Msa1368750:CDS 45.0%
ACTGGACTTGTGACTGTTCT+GGG - tig0018650:198430-198449 Msa1368750:CDS 45.0%
! GGGACTGTTGGCTATTTATG+TGG - tig0018650:198450-198469 Msa1368750:CDS 45.0%
! AGGGGTGGTTTGCATTGATC+TGG + tig0018650:197758-197777 None:intergenic 50.0%
ACTTTGCAAGCACAAAGGGG+TGG + tig0018650:197773-197792 None:intergenic 50.0%
GCTAAGGAACTATTGGTCGG+AGG - tig0018650:197918-197937 Msa1368750:three_prime_UTR 50.0%
TCGGAGGCAAGATAGATGCA+TGG - tig0018650:197934-197953 Msa1368750:three_prime_UTR 50.0%
TGGTGCAGGTGAAACTCCAA+TGG + tig0018650:198347-198366 None:intergenic 50.0%
TCTTCCAACTCTGCTGGAGA+TGG + tig0018650:198367-198386 None:intergenic 50.0%
TCTCCAGCAGAGTTGGAAGA+AGG - tig0018650:198367-198386 Msa1368750:intron 50.0%
ACAAGTCCAGTTCGCAACAC+CGG + tig0018650:198421-198440 None:intergenic 50.0%
!! TGTGACTGTTCTGGGACTGT+TGG - tig0018650:198438-198457 Msa1368750:CDS 50.0%
! AGGGGTGGTTTGCATTGATC+TGG + tig0018650:197758-197777 None:intergenic 50.0%
ACTTTGCAAGCACAAAGGGG+TGG + tig0018650:197773-197792 None:intergenic 50.0%
GCTAAGGAACTATTGGTCGG+AGG - tig0018650:197918-197937 Msa1368750:three_prime_UTR 50.0%
TCGGAGGCAAGATAGATGCA+TGG - tig0018650:197934-197953 Msa1368750:three_prime_UTR 50.0%
TGGTGCAGGTGAAACTCCAA+TGG + tig0018650:198347-198366 None:intergenic 50.0%
TCTTCCAACTCTGCTGGAGA+TGG + tig0018650:198367-198386 None:intergenic 50.0%
TCTCCAGCAGAGTTGGAAGA+AGG - tig0018650:198367-198386 Msa1368750:intron 50.0%
ACAAGTCCAGTTCGCAACAC+CGG + tig0018650:198421-198440 None:intergenic 50.0%
!! TGTGACTGTTCTGGGACTGT+TGG - tig0018650:198438-198457 Msa1368750:CDS 50.0%
GCAAAGGGACACTGTGAGCA+AGG - tig0018650:198280-198299 Msa1368750:CDS 55.0%
AACTCTGCTGGAGATGGTGC+AGG + tig0018650:198361-198380 None:intergenic 55.0%
TGCACCATCTCCAGCAGAGT+TGG - tig0018650:198360-198379 Msa1368750:intron 55.0%
GGACCTTCTTCCAACTCTGC+TGG + tig0018650:198373-198392 None:intergenic 55.0%
! CTGCTAGTTGGTGCAACAGC+TGG + tig0018650:198394-198413 None:intergenic 55.0%
GCAAAGGGACACTGTGAGCA+AGG - tig0018650:198280-198299 Msa1368750:CDS 55.0%
AACTCTGCTGGAGATGGTGC+AGG + tig0018650:198361-198380 None:intergenic 55.0%
TGCACCATCTCCAGCAGAGT+TGG - tig0018650:198360-198379 Msa1368750:intron 55.0%
GGACCTTCTTCCAACTCTGC+TGG + tig0018650:198373-198392 None:intergenic 55.0%
! CTGCTAGTTGGTGCAACAGC+TGG + tig0018650:198394-198413 None:intergenic 55.0%
TGCACCAACTAGCAGTGCGC+CGG - tig0018650:198399-198418 Msa1368750:intron 60.0%
AACACCGGCGCACTGCTAGT+TGG + tig0018650:198406-198425 None:intergenic 60.0%
TGCACCAACTAGCAGTGCGC+CGG - tig0018650:198399-198418 Msa1368750:intron 60.0%
AACACCGGCGCACTGCTAGT+TGG + tig0018650:198406-198425 None:intergenic 60.0%
!! AGTGCGCCGGTGTTGCGAAC+TGG - tig0018650:198412-198431 Msa1368750:intron 65.0%
!! AGTGCGCCGGTGTTGCGAAC+TGG - tig0018650:198412-198431 Msa1368750:intron 65.0%
Chromosome Type Strat End Strand Name
tig0018650 gene 197714 198738 197714 ID=Msa1368750;Name=Msa1368750
tig0018650 mRNA 197714 198738 197714 ID=Msa1368750-mRNA-1;Parent=Msa1368750;Name=Msa1368750-mRNA-1;_AED=0.00;_eAED=0.00;_QI=135|1|1|1|1|1|2|252|180
tig0018650 exon 197714 198324 197714 ID=Msa1368750-mRNA-1:exon:594;Parent=Msa1368750-mRNA-1
tig0018650 exon 198420 198738 198420 ID=Msa1368750-mRNA-1:exon:593;Parent=Msa1368750-mRNA-1
tig0018650 five_prime_UTR 198604 198738 198604 ID=Msa1368750-mRNA-1:five_prime_utr;Parent=Msa1368750-mRNA-1
tig0018650 CDS 198420 198603 198420 ID=Msa1368750-mRNA-1:cds;Parent=Msa1368750-mRNA-1
tig0018650 CDS 197966 198324 197966 ID=Msa1368750-mRNA-1:cds;Parent=Msa1368750-mRNA-1
tig0018650 three_prime_UTR 197714 197965 197714 ID=Msa1368750-mRNA-1:three_prime_utr;Parent=Msa1368750-mRNA-1
Gene Sequence

>Msa1368750

ATGGCTGTGTTCTCAAGAACTGCTTCTGCTTCTCTATTGTTCTTGTTCCTTCTCTTTGGTTTCTCTGCAGCTAAGGAACTATTGGTCGGAGGCAAGATAGATGCATGGAAGGTTCCATCATCTGAAGCAGACTCACTCAACCAATGGGCAGAAAAGTCTCGTTTCAAAGTCGGCGATCATCTTGTTTGGAAATATGATGGTGGGAAAGACTCAGTTTTGCAAGTAAACAAAGAAGATTATGCTAATTGCAACAGCTCAAACCCCATTGAACATTACAATGATGGGAACACGAAGGTAAAGCTAGACAGACCTGGACCATTTTACTTCATCAGTGGAGCAAAGGGACACTGTGAGCAAGGACAAAAGCTGATTGTGGTGGTTATGTCTCCAAAGAAAAGATCCATTGGAGTTTCACCTGCACCATCTCCAGCAGAGTTGGAAGAAGGTCCAGCTGTTGCACCAACTAGCAGTGCGCCGGTGTTGCGAACTGGACTTGTGACTGTTCTGGGACTGTTGGCTATTTATGTGGGTTTTCTCATATGA

Protein sequence

>Msa1368750

MAVFSRTASASLLFLFLLFGFSAAKELLVGGKIDAWKVPSSEADSLNQWAEKSRFKVGDHLVWKYDGGKDSVLQVNKEDYANCNSSNPIEHYNDGNTKVKLDRPGPFYFISGAKGHCEQGQKLIVVVMSPKKRSIGVSPAPSPAELEEGPAVAPTSSAPVLRTGLVTVLGLLAIYVGFLI*