AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0309680

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0309680 MtrunA17_Chr2g0278271 97.037 405 7 2 1 405 1 400 0.0 800
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0309680 AT1G33270.1 66.759 361 99 3 42 394 13 360 3.88e-175 493
Msa0309680 AT1G33270.2 66.319 288 76 3 42 321 13 287 3.02e-135 389

Find 147 sgRNAs with CRISPR-Local

Find 312 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTATTTAATATTTACAAAAT+AGG 0.150928 2_4:+4315902 Msa0309680:three_prime_UTR
AGACATTTGGAATAGTTATT+TGG 0.195790 2_4:+4316118 Msa0309680:three_prime_UTR
CAATTATGCTACCCTTTAAA+TGG 0.227483 2_4:+4315725 Msa0309680:three_prime_UTR
TTAAGGTGATGTCCATTTAA+AGG 0.227505 2_4:-4315737 None:intergenic
TTGCTGTAACACAGCTTCTT+TGG 0.250898 2_4:+4314575 Msa0309680:CDS
CTTCTCTTTCCTTATCATCT+TGG 0.258626 2_4:+4312174 Msa0309680:CDS
GTCTGTGCTGTAGTTGCTTC+TGG 0.266151 2_4:+4313318 Msa0309680:CDS
TATTTAATATTTACAAAATA+GGG 0.273161 2_4:+4315903 Msa0309680:three_prime_UTR
CTCTTCTCCGTTCACGCAAA+TGG 0.290088 2_4:+4311675 Msa0309680:exon
CTTGACCGACTCTTTGAGTT+TGG 0.293311 2_4:+4315558 Msa0309680:CDS
TTTACTTCTTCCTTTATTCC+AGG 0.293412 2_4:+4314658 Msa0309680:CDS
TTTGATAGCTACTAAAATAT+TGG 0.304460 2_4:+4313359 Msa0309680:CDS
TCCGCAGTTCCTAACTTCTA+AGG 0.305657 2_4:+4315777 Msa0309680:three_prime_UTR
GATATCTTGATGCTGCTGTC+TGG 0.307350 2_4:+4315580 Msa0309680:CDS
AGAGAGAATTGGTGCTGTTA+TGG 0.311091 2_4:+4312041 Msa0309680:CDS
ATGACGACTTTCCCTCGTTT+TGG 0.311194 2_4:-4311566 None:intergenic
CCTCCCTCCAATGATAATTA+AGG 0.315731 2_4:-4315754 None:intergenic
AAAACACTTGTGTAATCATT+TGG 0.318930 2_4:+4316157 Msa0309680:three_prime_UTR
AGGAGAGGGAGAAGGGGTTG+TGG 0.320455 2_4:-4311866 None:intergenic
AGATTCAACCTGATGTGATT+TGG 0.334321 2_4:+4312070 Msa0309680:CDS
TTGGAGACCCAGGGGTTTGT+TGG 0.335292 2_4:+4314594 Msa0309680:CDS
TATTCAGAATGGTTACATTA+AGG 0.335651 2_4:+4312212 Msa0309680:CDS
CATTGTACAATAGCACATTA+TGG 0.336247 2_4:+4315668 Msa0309680:exon
CGAAATCGTTTATGCATTGA+TGG 0.343466 2_4:+4314805 Msa0309680:CDS
AGGAGGAGGAGAGGGAGAAG+GGG 0.343599 2_4:-4311872 None:intergenic
GAACTTACAAAAGTAGATTA+TGG 0.347245 2_4:+4316182 Msa0309680:three_prime_UTR
AACAAATCACCCTGGAATAA+AGG 0.350115 2_4:-4314668 None:intergenic
GAGGAGGAGGAGAGGGAGAA+GGG 0.352199 2_4:-4311873 None:intergenic
GACATCACCTTAATTATCAT+TGG 0.360150 2_4:+4315747 Msa0309680:three_prime_UTR
TAAGGTGATGTCCATTTAAA+GGG 0.361735 2_4:-4315736 None:intergenic
CGAAACATCGTAGCTGGCTT+TGG 0.362210 2_4:-4314784 None:intergenic
GACGTTCATATAAGATCTAA+TGG 0.364869 2_4:+4314237 Msa0309680:CDS
TTTGTCATCCATAGGGAAAC+TGG 0.381622 2_4:-4315988 None:intergenic
CCATTAGCTGGTTCTTCTGC+TGG 0.395305 2_4:+4313288 Msa0309680:CDS
CCCTATGGATGACAAAGTTA+TGG 0.399539 2_4:+4315995 Msa0309680:three_prime_UTR
GCGTTCTCGGGATTGCAATC+TGG 0.403520 2_4:-4315394 None:intergenic
TGCATTGATGAGATCTTCCT+TGG 0.414782 2_4:-4314632 None:intergenic
TTGTAAACTAAGGAGACATT+TGG 0.421306 2_4:+4316105 Msa0309680:three_prime_UTR
GGAGATGAAGAAGGAGGAGA+TGG 0.421593 2_4:-4311719 None:intergenic
GGGGACTGCATTTCGGCTGG+GGG 0.428347 2_4:+4313401 Msa0309680:CDS
GATTCAACCTGATGTGATTT+GGG 0.433059 2_4:+4312071 Msa0309680:CDS
TTGGGGAAAATTGTAAACTA+AGG 0.434184 2_4:+4316095 Msa0309680:three_prime_UTR
GAGACCCAGGGGTTTGTTGG+TGG 0.434625 2_4:+4314597 Msa0309680:CDS
TCTTCTCCGTTCACGCAAAT+GGG 0.437353 2_4:+4311676 Msa0309680:exon
GATCTTATATGAACGTCATC+TGG 0.445330 2_4:-4314231 None:intergenic
GGAGGAGGAGGAGAGGGAGA+AGG 0.447113 2_4:-4311874 None:intergenic
AAGGAGGAGATGGATGGAGT+TGG 0.447255 2_4:-4311709 None:intergenic
TGCAATCCCATACGACCTGC+TGG 0.448491 2_4:-4315355 None:intergenic
TACAATGAGAAAGAGAGAAT+TGG 0.450270 2_4:+4312030 Msa0309680:CDS
TCCCTCTCCTCCTCCTCCGC+CGG 0.450277 2_4:+4311879 Msa0309680:CDS
CAGGAAACCACGCCATTAGC+TGG 0.458530 2_4:+4313276 Msa0309680:intron
CTCTGCTCCCAAATCACATC+AGG 0.461065 2_4:-4312078 None:intergenic
ATTTATAGCCAGTTTCCCTA+TGG 0.461255 2_4:+4315980 Msa0309680:three_prime_UTR
TCCGGCGGAGGAGGAGGAGA+GGG 0.462278 2_4:-4311880 None:intergenic
GATACTACTGCTCCTGCATT+CGG 0.466890 2_4:+4315639 Msa0309680:CDS
AGAAGAGTTGTAACTACTCC+TGG 0.467503 2_4:+4312129 Msa0309680:CDS
TGAGCAACACCAAGATGATA+AGG 0.474367 2_4:-4312183 None:intergenic
TAGTGAAACGGAAACGGAAA+CGG 0.475847 2_4:-4311774 None:intergenic
TTACTTCTTCCTTTATTCCA+GGG 0.476147 2_4:+4314659 Msa0309680:CDS
ATATCTTGATGCTGCTGTCT+GGG 0.486047 2_4:+4315581 Msa0309680:CDS
ATGAAGAAGGAGGAGATGGA+TGG 0.489641 2_4:-4311715 None:intergenic
AAATATTGGCTGAAGATTGT+CGG 0.498682 2_4:+4313373 Msa0309680:CDS
CGTCGTTAGTGAAACGGAAA+CGG 0.499050 2_4:-4311780 None:intergenic
CCAGCAGAAGAACCAGCTAA+TGG 0.499103 2_4:-4313288 None:intergenic
ACCGACATCTGCAGCACAAA+CGG 0.500017 2_4:+4314849 Msa0309680:CDS
CGATTTCGAAACATCGTAGC+TGG 0.507412 2_4:-4314790 None:intergenic
GAAATCGTTTATGCATTGAT+GGG 0.509760 2_4:+4314806 Msa0309680:CDS
ATCACCTTAATTATCATTGG+AGG 0.510078 2_4:+4315750 Msa0309680:three_prime_UTR
GAAAAGCTCGCCGGTGGCGA+CGG 0.510983 2_4:-4311920 None:intergenic
TGGCTGAAGATTGTCGGAAG+GGG 0.511558 2_4:+4313379 Msa0309680:CDS
CACAGCTTCTTTGGAGACCC+AGG 0.512275 2_4:+4314584 Msa0309680:CDS
AAAATTCAGGGATACCTGAC+GGG 0.513793 2_4:-4315425 None:intergenic
TTCCGGCGGAGGAGGAGGAG+AGG 0.516187 2_4:-4311881 None:intergenic
AATTTGTTTCTGAATATCAC+AGG 0.517161 2_4:-4316044 None:intergenic
AAATCCTTCGCCGTCGCCAC+CGG 0.518247 2_4:+4311910 Msa0309680:CDS
CGTATGGGATTGCAAGGGAT+AGG 0.518266 2_4:+4315364 Msa0309680:CDS
CTGATCCACCAACAAACCCC+TGG 0.519698 2_4:-4314602 None:intergenic
TATTGCGATAGAATTCTTGC+TGG 0.520803 2_4:+4315842 Msa0309680:three_prime_UTR
ACAATGCTATTTCCGAATGC+AGG 0.521454 2_4:-4315651 None:intergenic
ATGCATCCCATTTGCGTGAA+CGG 0.522447 2_4:-4311682 None:intergenic
ACGTTCATATAAGATCTAAT+GGG 0.522976 2_4:+4314238 Msa0309680:CDS
GGTGGATCAGTTTGATTCCA+AGG 0.522998 2_4:+4314615 Msa0309680:CDS
AGATCTAATGGGAGAGTTCG+AGG 0.526204 2_4:+4314249 Msa0309680:CDS
GTATGGGATTGCAAGGGATA+GGG 0.532482 2_4:+4315365 Msa0309680:CDS
AGTTGCTTCTGGAGCTAGCA+TGG 0.537640 2_4:+4313329 Msa0309680:CDS
ACGGTAACGGTGAGCTTGAG+AGG 0.538984 2_4:-4311743 None:intergenic
TCACCACCGGAGTCGATTCA+CGG 0.552472 2_4:-4311972 None:intergenic
CTCGCCGGTGGCGACGGCGA+AGG 0.555094 2_4:-4311914 None:intergenic
CCATAACTTTGTCATCCATA+GGG 0.555512 2_4:-4315995 None:intergenic
CCGCAGTTCCTAACTTCTAA+GGG 0.559472 2_4:+4315778 Msa0309680:three_prime_UTR
GGCTGAAGATTGTCGGAAGG+GGG 0.561976 2_4:+4313380 Msa0309680:CDS
TTAATATTTACAAAATAGGG+TGG 0.562220 2_4:+4315906 Msa0309680:three_prime_UTR
TCAAGAATTACATCTTCTGC+TGG 0.562958 2_4:-4315540 None:intergenic
GCAGGTCGTATGGGATTGCA+AGG 0.563172 2_4:+4315358 Msa0309680:CDS
CTGAAGATTGTCGGAAGGGG+GGG 0.569435 2_4:+4313382 Msa0309680:CDS
TGATGCTGCTGTCTGGGCAA+AGG 0.572016 2_4:+4315587 Msa0309680:CDS
ATTGCGATAGAATTCTTGCT+GGG 0.572047 2_4:+4315843 Msa0309680:three_prime_UTR
GGTTAACGTCGTTAGTGAAA+CGG 0.575244 2_4:-4311786 None:intergenic
TGCGATAGAATTCTTGCTGG+GGG 0.577417 2_4:+4315845 Msa0309680:three_prime_UTR
GCTGAAGATTGTCGGAAGGG+GGG 0.578978 2_4:+4313381 Msa0309680:CDS
AGCGACCTCCGTCCAAAACG+AGG 0.581530 2_4:+4311554 None:intergenic
ACAGCTTCTTTGGAGACCCA+GGG 0.582345 2_4:+4314585 Msa0309680:CDS
AAATCGTTTATGCATTGATG+GGG 0.582936 2_4:+4314807 Msa0309680:CDS
GCCATAACTTTGTCATCCAT+AGG 0.587101 2_4:-4315996 None:intergenic
AACGGAAAGTGTGACGGTAA+CGG 0.587248 2_4:-4311756 None:intergenic
AATTGAATTGAGTGCGCGTG+GGG 0.592504 2_4:-4311819 None:intergenic
TCACCTTAATTATCATTGGA+GGG 0.593314 2_4:+4315751 Msa0309680:three_prime_UTR
GAGAGTGAAAGATATTGAAG+CGG 0.595167 2_4:+4312098 Msa0309680:CDS
GGTAACGGTGAGCTTGAGAG+GGG 0.595995 2_4:-4311741 None:intergenic
GTTCACGCAAATGGGATGCA+TGG 0.600746 2_4:+4311684 Msa0309680:exon
ACCGTTTGTGCTGCAGATGT+CGG 0.603463 2_4:-4314850 None:intergenic
CGGTAACGGTGAGCTTGAGA+GGG 0.603909 2_4:-4311742 None:intergenic
GAGTTCAAATTCGAGTTCAA+CGG 0.605700 2_4:+4312002 Msa0309680:CDS
CATTTGCGTGAACGGAGAAG+AGG 0.607165 2_4:-4311674 None:intergenic
GATATCCAAACTCAAAGAGT+CGG 0.608281 2_4:-4315563 None:intergenic
TTGGCTGAAGATTGTCGGAA+GGG 0.608456 2_4:+4313378 Msa0309680:CDS
TGATCCACCAACAAACCCCT+GGG 0.611703 2_4:-4314601 None:intergenic
GCGACCTCCGTCCAAAACGA+GGG 0.613103 2_4:+4311555 None:intergenic
AACGGAAACGGAAAGTGTGA+CGG 0.617926 2_4:-4311762 None:intergenic
ACCTAAGAAAAGCTCGCCGG+TGG 0.620128 2_4:-4311926 None:intergenic
ATTGGCTGAAGATTGTCGGA+AGG 0.624133 2_4:+4313377 Msa0309680:CDS
GTGGAGTGTTGTTGAACGCG+TGG 0.628852 2_4:-4311847 None:intergenic
CAACAGCCGTGAATCGACTC+CGG 0.628860 2_4:+4311966 Msa0309680:CDS
ACGAGGGAAAGTCGTCATCG+TGG 0.633479 2_4:+4311571 Msa0309680:five_prime_UTR
AGAATTGAATTGAGTGCGCG+TGG 0.635696 2_4:-4311821 None:intergenic
GAACTCTCGAACATCACCAC+CGG 0.639238 2_4:-4311985 None:intergenic
CCCTTAGAAGTTAGGAACTG+CGG 0.642484 2_4:-4315778 None:intergenic
TGAAAGATATTGAAGCGGAA+CGG 0.645350 2_4:+4312103 Msa0309680:CDS
TATACCTAAGAAAAGCTCGC+CGG 0.652080 2_4:-4311929 None:intergenic
AATCGTTTATGCATTGATGG+GGG 0.653176 2_4:+4314808 Msa0309680:CDS
AGAAACCAATCACAAAAGAG+AGG 0.655385 2_4:+4311625 Msa0309680:five_prime_UTR
TTGCGATAGAATTCTTGCTG+GGG 0.660284 2_4:+4315844 Msa0309680:three_prime_UTR
GAGTGTTGTTGAACGCGTGG+TGG 0.667602 2_4:-4311844 None:intergenic
CAGCTTCTTTGGAGACCCAG+GGG 0.669446 2_4:+4314586 Msa0309680:CDS
CCTTAATTATCATTGGAGGG+AGG 0.672110 2_4:+4315754 Msa0309680:three_prime_UTR
GTTTGTGCTGCAGATGTCGG+TGG 0.676596 2_4:-4314847 None:intergenic
TGCGCGTGGGGAGAAGAGTG+AGG 0.677813 2_4:-4311807 None:intergenic
CAGCCGTGAATCGACTCCGG+TGG 0.679268 2_4:+4311969 Msa0309680:CDS
GTAACGGTGAGCTTGAGAGG+GGG 0.680996 2_4:-4311740 None:intergenic
TTATGGATTGAAGATGCATG+AGG 0.686616 2_4:+4315685 Msa0309680:three_prime_UTR
AAATTCAGGGATACCTGACG+GGG 0.689461 2_4:-4315424 None:intergenic
GCGATAGAATTCTTGCTGGG+GGG 0.689470 2_4:+4315846 Msa0309680:three_prime_UTR
GCAGCAGAGAAACTAAAACC+AGG 0.702246 2_4:-4312147 None:intergenic
GAATTGAATTGAGTGCGCGT+GGG 0.703219 2_4:-4311820 None:intergenic
AGAAGAACCAGCTAATGGCG+TGG 0.703301 2_4:-4313283 None:intergenic
CAGGTCGTATGGGATTGCAA+GGG 0.713449 2_4:+4315359 Msa0309680:CDS
AATTCAGGGATACCTGACGG+GGG 0.776486 2_4:-4315423 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATAGTTATGAATTAAAAAA+AGG - chr2_4:4312246-4312265 None:intergenic 10.0%
!!! TTTTTAATTCATAACTATTA+AGG + chr2_4:4312247-4312266 Msa0309680:intron 10.0%
!! AATTACATTTATAAATTACA+TGG + chr2_4:4314427-4314446 Msa0309680:intron 10.0%
!! AATTAAACAAAAAGAAAATA+AGG + chr2_4:4314462-4314481 Msa0309680:intron 10.0%
!! AATAAGTTATTTATTCAAAC+AGG + chr2_4:4312580-4312599 Msa0309680:intron 15.0%
!! ATAAGTTATTTATTCAAACA+GGG + chr2_4:4312581-4312600 Msa0309680:intron 15.0%
!!! TTTAAAAGATATAACTGTTT+TGG + chr2_4:4313909-4313928 Msa0309680:intron 15.0%
!!! TTAAAAGATATAACTGTTTT+GGG + chr2_4:4313910-4313929 Msa0309680:intron 15.0%
!! GAGATATATATAATTTCATT+TGG + chr2_4:4314150-4314169 Msa0309680:intron 15.0%
!!! ATTTTTATTTAGTTACTTGT+TGG + chr2_4:4314873-4314892 Msa0309680:intron 15.0%
!!! ATGCCTTATAAATTTTTTTT+TGG + chr2_4:4314944-4314963 Msa0309680:intron 15.0%
!! AGTCCAAAAAAAAATTTATA+AGG - chr2_4:4314950-4314969 None:intergenic 15.0%
!!! CAATGTTTTAAATACTATAA+AGG - chr2_4:4315025-4315044 None:intergenic 15.0%
!! AAGTATTAAAGATAAATTGA+TGG + chr2_4:4315077-4315096 Msa0309680:intron 15.0%
!! AGTTATGAATTAAAAAAAGG+AGG - chr2_4:4312243-4312262 None:intergenic 20.0%
!! TAAGTTATTTATTCAAACAG+GGG + chr2_4:4312582-4312601 Msa0309680:intron 20.0%
!! TATCTTTGTATGTTTATCTA+GGG + chr2_4:4312881-4312900 Msa0309680:intron 20.0%
!! CAATAACAAAAACATTCAAT+TGG - chr2_4:4312910-4312929 None:intergenic 20.0%
!!! TTTTGTTATTGAAATAGAAC+TGG + chr2_4:4312919-4312938 Msa0309680:intron 20.0%
!! TATCATTGTATGTTTATCTA+GGG + chr2_4:4312960-4312979 Msa0309680:intron 20.0%
!!! AGTTATGTAATCTACTATTT+TGG + chr2_4:4313182-4313201 Msa0309680:intron 20.0%
!!! TTTGATAGCTACTAAAATAT+TGG + chr2_4:4313359-4313378 Msa0309680:CDS 20.0%
!!! ACTTGAAGTTTAACTTTTAT+TGG + chr2_4:4313567-4313586 Msa0309680:intron 20.0%
!!! CTTGAAGTTTAACTTTTATT+GGG + chr2_4:4313568-4313587 Msa0309680:intron 20.0%
!!! TTGAAGTTTAACTTTTATTG+GGG + chr2_4:4313569-4313588 Msa0309680:intron 20.0%
!!! AAAAATAGCTAAGCTTTTTT+GGG - chr2_4:4313627-4313646 None:intergenic 20.0%
!!! AAAAAATAGCTAAGCTTTTT+TGG - chr2_4:4313628-4313647 None:intergenic 20.0%
!! ATAGAATCCAAAAAAAAAAG+TGG - chr2_4:4313806-4313825 None:intergenic 20.0%
!!! CTTTTTTTTTTGGATTCTAT+TGG + chr2_4:4313806-4313825 Msa0309680:intron 20.0%
!! TACTTAATAACTTTCAAGAT+AGG - chr2_4:4313849-4313868 None:intergenic 20.0%
!! AGTTATTAAGTATCAGTTAT+TGG + chr2_4:4313857-4313876 Msa0309680:intron 20.0%
!!! ATATCTTTTAAAAATGCTAG+AGG - chr2_4:4313901-4313920 None:intergenic 20.0%
!!! TAAAAGATATAACTGTTTTG+GGG + chr2_4:4313911-4313930 Msa0309680:intron 20.0%
!! GAAATTATATATATCTCGTA+AGG - chr2_4:4314147-4314166 None:intergenic 20.0%
!!! AGTTATTTTCATTATAGAAC+TGG + chr2_4:4314295-4314314 Msa0309680:intron 20.0%
!! CACAAAATAATCAATCAATT+GGG - chr2_4:4314910-4314929 None:intergenic 20.0%
!! TCACAAAATAATCAATCAAT+TGG - chr2_4:4314911-4314930 None:intergenic 20.0%
!! AAAATAATTCTAACTTTCTC+AGG + chr2_4:4315105-4315124 Msa0309680:intron 20.0%
!! TTAATATTTACAAAATAGGG+TGG + chr2_4:4315906-4315925 Msa0309680:three_prime_UTR 20.0%
! TATTCAGAATGGTTACATTA+AGG + chr2_4:4312212-4312231 Msa0309680:CDS 25.0%
! ATAACTATTAAGGACATGTT+TGG + chr2_4:4312257-4312276 Msa0309680:intron 25.0%
! TCACTTTCATAAATTACTAC+TGG - chr2_4:4312413-4312432 None:intergenic 25.0%
! AGCTTATGAAAATAGCTTAT+AGG + chr2_4:4312710-4312729 Msa0309680:intron 25.0%
! AAATCAATCGCTTATAACAT+GGG - chr2_4:4312812-4312831 None:intergenic 25.0%
!!! TTTGAGGTTTTTATCAAAAC+AGG + chr2_4:4312829-4312848 Msa0309680:intron 25.0%
! GTATCTTTGTATGTTTATCT+AGG + chr2_4:4312880-4312899 Msa0309680:intron 25.0%
! GTATCATTGTATGTTTATCT+AGG + chr2_4:4312959-4312978 Msa0309680:intron 25.0%
!!! CATGTAATTAGTTTTGACAT+TGG + chr2_4:4312999-4313018 Msa0309680:intron 25.0%
! AGTATACCAACAAGAAAATA+CGG - chr2_4:4313148-4313167 None:intergenic 25.0%
!! AATAAGATCCTTGTGAATTT+TGG + chr2_4:4313688-4313707 Msa0309680:intron 25.0%
!! ATAAGATCCTTGTGAATTTT+GGG + chr2_4:4313689-4313708 Msa0309680:intron 25.0%
!!! AACTGTTTTTGAAACCAAAT+AGG + chr2_4:4313969-4313988 Msa0309680:intron 25.0%
! ACGTTCATATAAGATCTAAT+GGG + chr2_4:4314238-4314257 Msa0309680:CDS 25.0%
! TTCACCTTATTATTTATGAC+TGG + chr2_4:4314350-4314369 Msa0309680:intron 25.0%
! TCTTCCAGTCATAAATAATA+AGG - chr2_4:4314357-4314376 None:intergenic 25.0%
! CTTGATGAGAAAAAACATAT+TGG + chr2_4:4314389-4314408 Msa0309680:intron 25.0%
! TTGTTAGTATAGTATTACCT+CGG + chr2_4:4314686-4314705 Msa0309680:intron 25.0%
!! TCAGTTTCAAAATGAACTTT+TGG + chr2_4:4314993-4315012 Msa0309680:intron 25.0%
! AAAGCGATAAATGTTTATCA+AGG - chr2_4:4315313-4315332 None:intergenic 25.0%
! ATAAACATTTATCGCTTTAC+AGG + chr2_4:4315315-4315334 Msa0309680:intron 25.0%
!! AATCATTTCAGCTTTTGAAT+TGG + chr2_4:4315508-4315527 Msa0309680:intron 25.0%
!! ATCATTTCAGCTTTTGAATT+GGG + chr2_4:4315509-4315528 Msa0309680:intron 25.0%
!!! TGAAATCTCAGATTTTTTTG+TGG + chr2_4:4315939-4315958 Msa0309680:three_prime_UTR 25.0%
!!! AATTTGTTTCTGAATATCAC+AGG - chr2_4:4316047-4316066 None:intergenic 25.0%
!! TTGCTTCTTGATTTTGTATT+TGG + chr2_4:4316076-4316095 Msa0309680:three_prime_UTR 25.0%
!! TGCTTCTTGATTTTGTATTT+GGG + chr2_4:4316077-4316096 Msa0309680:three_prime_UTR 25.0%
!! AGACATTTGGAATAGTTATT+TGG + chr2_4:4316118-4316137 Msa0309680:three_prime_UTR 25.0%
! AAAACACTTGTGTAATCATT+TGG + chr2_4:4316157-4316176 Msa0309680:three_prime_UTR 25.0%
! GAACTTACAAAAGTAGATTA+TGG + chr2_4:4316182-4316201 Msa0309680:three_prime_UTR 25.0%
TACAATGAGAAAGAGAGAAT+TGG + chr2_4:4312030-4312049 Msa0309680:CDS 30.0%
! GCTCATTTTCTTATTCAGAA+TGG + chr2_4:4312201-4312220 Msa0309680:CDS 30.0%
TGTCTGTATCATTGTTTCAT+AGG - chr2_4:4312366-4312385 None:intergenic 30.0%
CAAATCAATCGCTTATAACA+TGG - chr2_4:4312813-4312832 None:intergenic 30.0%
!! TGTTATAAGCGATTGATTTG+AGG + chr2_4:4312813-4312832 Msa0309680:intron 30.0%
TGATATGAGAGAATAGACTA+TGG - chr2_4:4312855-4312874 None:intergenic 30.0%
TAGAACTGGAATTGTTGATA+AGG + chr2_4:4312933-4312952 Msa0309680:intron 30.0%
!!! TAGTTTTGACATTGGTTATC+TGG + chr2_4:4313007-4313026 Msa0309680:intron 30.0%
! ACTGTGTATCTTGTTCATTT+TGG + chr2_4:4313039-4313058 Msa0309680:intron 30.0%
TTTCAATATGAGTCATCTTG+AGG + chr2_4:4313225-4313244 Msa0309680:intron 30.0%
! AAATATTGGCTGAAGATTGT+CGG + chr2_4:4313373-4313392 Msa0309680:CDS 30.0%
! AAACTTCAAGTTTCAACACA+TGG - chr2_4:4313558-4313577 None:intergenic 30.0%
!!! CTATCCATCAAGACTTTTTT+GGG - chr2_4:4313716-4313735 None:intergenic 30.0%
AAAAAGTGGCATTGCTTAAA+AGG - chr2_4:4313792-4313811 None:intergenic 30.0%
!!! AGCAATGCCACTTTTTTTTT+TGG + chr2_4:4313796-4313815 Msa0309680:intron 30.0%
GATTCTATTGGAATTCAGAA+TGG + chr2_4:4313818-4313837 Msa0309680:intron 30.0%
AAGTATCAGTTATTGGTGAA+TGG + chr2_4:4313864-4313883 Msa0309680:intron 30.0%
ACATCATATAAGCTCCTATT+TGG - chr2_4:4313986-4314005 None:intergenic 30.0%
AACTAAGTTATTATCGACAG+TGG + chr2_4:4314026-4314045 Msa0309680:intron 30.0%
AATGTTCTAATCTCATAGTG+CGG + chr2_4:4314117-4314136 Msa0309680:intron 30.0%
! TATAATTGTTTTCTCTCGAC+AGG + chr2_4:4314176-4314195 Msa0309680:intron 30.0%
GACGTTCATATAAGATCTAA+TGG + chr2_4:4314237-4314256 Msa0309680:CDS 30.0%
TTTACTTCTTCCTTTATTCC+AGG + chr2_4:4314658-4314677 Msa0309680:CDS 30.0%
TTACTTCTTCCTTTATTCCA+GGG + chr2_4:4314659-4314678 Msa0309680:CDS 30.0%
! GAAATCGTTTATGCATTGAT+GGG + chr2_4:4314806-4314825 Msa0309680:CDS 30.0%
! AAATCGTTTATGCATTGATG+GGG + chr2_4:4314807-4314826 Msa0309680:CDS 30.0%
GATTCTATTCAACAGCTAAT+TGG + chr2_4:4315054-4315073 Msa0309680:intron 30.0%
AAATATTCATGCACTGTGAT+CGG + chr2_4:4315222-4315241 Msa0309680:intron 30.0%
ATGCTAACTCACAAAATTCA+GGG - chr2_4:4315440-4315459 None:intergenic 30.0%
TATGCTAACTCACAAAATTC+AGG - chr2_4:4315441-4315460 None:intergenic 30.0%
!!! CTTGAACTAGTTTTTCAACT+GGG - chr2_4:4315617-4315636 None:intergenic 30.0%
!!! TCTTGAACTAGTTTTTCAAC+TGG - chr2_4:4315618-4315637 None:intergenic 30.0%
CATTGTACAATAGCACATTA+TGG + chr2_4:4315668-4315687 Msa0309680:exon 30.0%
CAATTATGCTACCCTTTAAA+TGG + chr2_4:4315725-4315744 Msa0309680:three_prime_UTR 30.0%
TAAGGTGATGTCCATTTAAA+GGG - chr2_4:4315739-4315758 None:intergenic 30.0%
TTAAGGTGATGTCCATTTAA+AGG - chr2_4:4315740-4315759 None:intergenic 30.0%
GACATCACCTTAATTATCAT+TGG + chr2_4:4315747-4315766 Msa0309680:three_prime_UTR 30.0%
ATCACCTTAATTATCATTGG+AGG + chr2_4:4315750-4315769 Msa0309680:three_prime_UTR 30.0%
TCACCTTAATTATCATTGGA+GGG + chr2_4:4315751-4315770 Msa0309680:three_prime_UTR 30.0%
! GTTTTATACCCTTAGAAGTT+AGG - chr2_4:4315789-4315808 None:intergenic 30.0%
! GCTTCTTGATTTTGTATTTG+GGG + chr2_4:4316078-4316097 Msa0309680:three_prime_UTR 30.0%
TTGGGGAAAATTGTAAACTA+AGG + chr2_4:4316095-4316114 Msa0309680:three_prime_UTR 30.0%
TTGTAAACTAAGGAGACATT+TGG + chr2_4:4316105-4316124 Msa0309680:three_prime_UTR 30.0%
AGAAACCAATCACAAAAGAG+AGG + chr2_4:4311625-4311644 Msa0309680:five_prime_UTR 35.0%
! TCTAACCTCTCTTTTGTGAT+TGG - chr2_4:4311633-4311652 None:intergenic 35.0%
! GAGTTCAAATTCGAGTTCAA+CGG + chr2_4:4312002-4312021 Msa0309680:CDS 35.0%
AGATTCAACCTGATGTGATT+TGG + chr2_4:4312070-4312089 Msa0309680:CDS 35.0%
GATTCAACCTGATGTGATTT+GGG + chr2_4:4312071-4312090 Msa0309680:CDS 35.0%
GAGAGTGAAAGATATTGAAG+CGG + chr2_4:4312098-4312117 Msa0309680:CDS 35.0%
TGAAAGATATTGAAGCGGAA+CGG + chr2_4:4312103-4312122 Msa0309680:CDS 35.0%
CTTCTCTTTCCTTATCATCT+TGG + chr2_4:4312174-4312193 Msa0309680:CDS 35.0%
! ATGCTTATCTAGAGTCTGTT+TGG + chr2_4:4312298-4312317 Msa0309680:intron 35.0%
! ACACCTTCAATTAGAAGTGT+CGG + chr2_4:4312472-4312491 Msa0309680:intron 35.0%
GTTTATCTAGGGATTCCAAT+CGG + chr2_4:4312892-4312911 Msa0309680:intron 35.0%
TTTATCTAGGGATTCCAATC+GGG + chr2_4:4312972-4312991 Msa0309680:intron 35.0%
! TTGACTCCGTATTTTCTTGT+TGG + chr2_4:4313139-4313158 Msa0309680:intron 35.0%
!!! TAGTTTTGTGATGCATTTCC+AGG + chr2_4:4313257-4313276 Msa0309680:intron 35.0%
ACTTCAAGCTCAAAGGATAA+GGG - chr2_4:4313511-4313530 None:intergenic 35.0%
AGTTTCAACACATGGTAAAC+TGG - chr2_4:4313550-4313569 None:intergenic 35.0%
! ACTTTTATTGGGGCAAACAT+AGG + chr2_4:4313579-4313598 Msa0309680:intron 35.0%
GCAAACATAGGTCAATTTCT+AGG + chr2_4:4313591-4313610 Msa0309680:intron 35.0%
TTATTTCAGTTCTGTCTCCA+AGG - chr2_4:4313673-4313692 None:intergenic 35.0%
!!! CCTATCCATCAAGACTTTTT+TGG - chr2_4:4313717-4313736 None:intergenic 35.0%
! CCAAAAAAGTCTTGATGGAT+AGG + chr2_4:4313714-4313733 Msa0309680:intron 35.0%
! AAGTCTTGATGGATAGGATT+TGG + chr2_4:4313720-4313739 Msa0309680:intron 35.0%
TGCTTAAAAGGAGAAAAGAG+TGG - chr2_4:4313780-4313799 None:intergenic 35.0%
TAGCTGTGATAATATGCATG+TGG + chr2_4:4314066-4314085 Msa0309680:intron 35.0%
GATCTTATATGAACGTCATC+TGG - chr2_4:4314234-4314253 None:intergenic 35.0%
GTAGAAAGAAAGACTTGAAC+TGG + chr2_4:4314321-4314340 Msa0309680:intron 35.0%
CAGGACTTGAAAAACTTCTT+CGG - chr2_4:4314526-4314545 None:intergenic 35.0%
! CAGAAGTACATATTACGACA+CGG - chr2_4:4314549-4314568 None:intergenic 35.0%
AACAAATCACCCTGGAATAA+AGG - chr2_4:4314671-4314690 None:intergenic 35.0%
ACTATACTAACAAATCACCC+TGG - chr2_4:4314679-4314698 None:intergenic 35.0%
AAAATCATCACATGAAACCG+AGG - chr2_4:4314706-4314725 None:intergenic 35.0%
CGAAATCGTTTATGCATTGA+TGG + chr2_4:4314805-4314824 Msa0309680:CDS 35.0%
! AATCGTTTATGCATTGATGG+GGG + chr2_4:4314808-4314827 Msa0309680:CDS 35.0%
TCAAGAATTACATCTTCTGC+TGG - chr2_4:4315543-4315562 None:intergenic 35.0%
GATATCCAAACTCAAAGAGT+CGG - chr2_4:4315566-4315585 None:intergenic 35.0%
! TTATGGATTGAAGATGCATG+AGG + chr2_4:4315685-4315704 Msa0309680:three_prime_UTR 35.0%
TATTGCGATAGAATTCTTGC+TGG + chr2_4:4315842-4315861 Msa0309680:three_prime_UTR 35.0%
ATTGCGATAGAATTCTTGCT+GGG + chr2_4:4315843-4315862 Msa0309680:three_prime_UTR 35.0%
ATTTATAGCCAGTTTCCCTA+TGG + chr2_4:4315980-4315999 Msa0309680:three_prime_UTR 35.0%
CCATAACTTTGTCATCCATA+GGG - chr2_4:4315998-4316017 None:intergenic 35.0%
TAGTGAAACGGAAACGGAAA+CGG - chr2_4:4311777-4311796 None:intergenic 40.0%
GGTTAACGTCGTTAGTGAAA+CGG - chr2_4:4311789-4311808 None:intergenic 40.0%
! AAGGATTTCTTTTCTTCCGG+CGG - chr2_4:4311898-4311917 None:intergenic 40.0%
! GCGAAGGATTTCTTTTCTTC+CGG - chr2_4:4311901-4311920 None:intergenic 40.0%
TATACCTAAGAAAAGCTCGC+CGG - chr2_4:4311932-4311951 None:intergenic 40.0%
!! AGAGAGAATTGGTGCTGTTA+TGG + chr2_4:4312041-4312060 Msa0309680:CDS 40.0%
AGAAGAGTTGTAACTACTCC+TGG + chr2_4:4312129-4312148 Msa0309680:CDS 40.0%
TGAGCAACACCAAGATGATA+AGG - chr2_4:4312186-4312205 None:intergenic 40.0%
! CTTCTAATTGAAGGTGTGTC+TGG - chr2_4:4312469-4312488 None:intergenic 40.0%
AAACCACTTGTGAAGCAGTT+TGG + chr2_4:4312615-4312634 Msa0309680:intron 40.0%
AACCACTTGTGAAGCAGTTT+GGG + chr2_4:4312616-4312635 Msa0309680:intron 40.0%
GAGCCTATGAAAACAACTCA+TGG + chr2_4:4312640-4312659 Msa0309680:intron 40.0%
!! ACGCCATGAGTTGTTTTCAT+AGG - chr2_4:4312646-4312665 None:intergenic 40.0%
TAATTACATGAGCACCCGAT+TGG - chr2_4:4312989-4313008 None:intergenic 40.0%
! TTGTGCACAGTATAGCTTGT+AGG + chr2_4:4313111-4313130 Msa0309680:intron 40.0%
TACTTTCAGGCCAAGTATAG+AGG - chr2_4:4313431-4313450 None:intergenic 40.0%
TGTCAATGCTTGTTTGCTCA+TGG + chr2_4:4313484-4313503 Msa0309680:intron 40.0%
CACTTCAAGCTCAAAGGATA+AGG - chr2_4:4313512-4313531 None:intergenic 40.0%
TATCCTTTGAGCTTGAAGTG+TGG + chr2_4:4313512-4313531 Msa0309680:intron 40.0%
TAACCACACTTCAAGCTCAA+AGG - chr2_4:4313518-4313537 None:intergenic 40.0%
TTTGGGTCCCAAAATTCACA+AGG - chr2_4:4313699-4313718 None:intergenic 40.0%
! TCTTGATGGATAGGATTTGG+TGG + chr2_4:4313723-4313742 Msa0309680:intron 40.0%
! CTTGATGGATAGGATTTGGT+GGG + chr2_4:4313724-4313743 Msa0309680:intron 40.0%
GTTCGTGTTCATGTGATAAG+TGG + chr2_4:4313746-4313765 Msa0309680:intron 40.0%
TTGCTGTAACACAGCTTCTT+TGG + chr2_4:4314575-4314594 Msa0309680:CDS 40.0%
! TGCATTGATGAGATCTTCCT+TGG - chr2_4:4314635-4314654 None:intergenic 40.0%
! AGATATCTGGAGGGAGTATA+AGG - chr2_4:4314760-4314779 None:intergenic 40.0%
! TTTGGTGCAAGATATCTGGA+GGG - chr2_4:4314769-4314788 None:intergenic 40.0%
AAAATTCAGGGATACCTGAC+GGG - chr2_4:4315428-4315447 None:intergenic 40.0%
CAAAATTCAGGGATACCTGA+CGG - chr2_4:4315429-4315448 None:intergenic 40.0%
!! TAGACGACTGATGGGTATTT+TGG + chr2_4:4315481-4315500 Msa0309680:intron 40.0%
ATATCTTGATGCTGCTGTCT+GGG + chr2_4:4315581-4315600 Msa0309680:CDS 40.0%
!! ACAATGCTATTTCCGAATGC+AGG - chr2_4:4315654-4315673 None:intergenic 40.0%
CCTCCCTCCAATGATAATTA+AGG - chr2_4:4315757-4315776 None:intergenic 40.0%
CCTTAATTATCATTGGAGGG+AGG + chr2_4:4315754-4315773 Msa0309680:three_prime_UTR 40.0%
TTGCGATAGAATTCTTGCTG+GGG + chr2_4:4315844-4315863 Msa0309680:three_prime_UTR 40.0%
TTTGTCATCCATAGGGAAAC+TGG - chr2_4:4315991-4316010 None:intergenic 40.0%
CCCTATGGATGACAAAGTTA+TGG + chr2_4:4315995-4316014 Msa0309680:three_prime_UTR 40.0%
GCCATAACTTTGTCATCCAT+AGG - chr2_4:4315999-4316018 None:intergenic 40.0%
! ATGACGACTTTCCCTCGTTT+TGG - chr2_4:4311569-4311588 None:intergenic 45.0%
TCTTCTCCGTTCACGCAAAT+GGG + chr2_4:4311676-4311695 Msa0309680:exon 45.0%
ATGCATCCCATTTGCGTGAA+CGG - chr2_4:4311685-4311704 None:intergenic 45.0%
ATGAAGAAGGAGGAGATGGA+TGG - chr2_4:4311718-4311737 None:intergenic 45.0%
! AACGGAAAGTGTGACGGTAA+CGG - chr2_4:4311759-4311778 None:intergenic 45.0%
! AACGGAAACGGAAAGTGTGA+CGG - chr2_4:4311765-4311784 None:intergenic 45.0%
CGTCGTTAGTGAAACGGAAA+CGG - chr2_4:4311783-4311802 None:intergenic 45.0%
AATTGAATTGAGTGCGCGTG+GGG - chr2_4:4311822-4311841 None:intergenic 45.0%
GAATTGAATTGAGTGCGCGT+GGG - chr2_4:4311823-4311842 None:intergenic 45.0%
AGAATTGAATTGAGTGCGCG+TGG - chr2_4:4311824-4311843 None:intergenic 45.0%
GCAGCAGAGAAACTAAAACC+AGG - chr2_4:4312150-4312169 None:intergenic 45.0%
!!! GGTTTTAGTTTCTCTGCTGC+TGG + chr2_4:4312150-4312169 Msa0309680:CDS 45.0%
! GCACCGACACTTCTAATTGA+AGG - chr2_4:4312478-4312497 None:intergenic 45.0%
!! GTGCACAAGCATAACTTGCT+AGG - chr2_4:4313099-4313118 None:intergenic 45.0%
ATTGGCTGAAGATTGTCGGA+AGG + chr2_4:4313377-4313396 Msa0309680:CDS 45.0%
TTGGCTGAAGATTGTCGGAA+GGG + chr2_4:4313378-4313397 Msa0309680:CDS 45.0%
! CAACTACGCGAAGTACTTTC+AGG - chr2_4:4313444-4313463 None:intergenic 45.0%
!! CTGAAAGTACTTCGCGTAGT+TGG + chr2_4:4313442-4313461 Msa0309680:intron 45.0%
TACATTGCTGACGAGAACCT+TGG + chr2_4:4313653-4313672 Msa0309680:intron 45.0%
GGGACCCAAAAAAGTCTTGA+TGG + chr2_4:4313709-4313728 Msa0309680:intron 45.0%
GGAGCTTATATGATGTGCAG+AGG + chr2_4:4313990-4314009 Msa0309680:intron 45.0%
AGATCTAATGGGAGAGTTCG+AGG + chr2_4:4314249-4314268 Msa0309680:CDS 45.0%
AGTACATATTACGACACGGC+AGG - chr2_4:4314545-4314564 None:intergenic 45.0%
GGTGGATCAGTTTGATTCCA+AGG + chr2_4:4314615-4314634 Msa0309680:CDS 45.0%
! CTTTGGTGCAAGATATCTGG+AGG - chr2_4:4314770-4314789 None:intergenic 45.0%
!! TGGCTTTGGTGCAAGATATC+TGG - chr2_4:4314773-4314792 None:intergenic 45.0%
CGATTTCGAAACATCGTAGC+TGG - chr2_4:4314793-4314812 None:intergenic 45.0%
GTATGGGATTGCAAGGGATA+GGG + chr2_4:4315365-4315384 Msa0309680:CDS 45.0%
AAATTCAGGGATACCTGACG+GGG - chr2_4:4315427-4315446 None:intergenic 45.0%
AACGACTAGTAGACGACTGA+TGG + chr2_4:4315472-4315491 Msa0309680:intron 45.0%
ACGACTAGTAGACGACTGAT+GGG + chr2_4:4315473-4315492 Msa0309680:intron 45.0%
! CTTGACCGACTCTTTGAGTT+TGG + chr2_4:4315558-4315577 Msa0309680:CDS 45.0%
GATATCTTGATGCTGCTGTC+TGG + chr2_4:4315580-4315599 Msa0309680:CDS 45.0%
GATACTACTGCTCCTGCATT+CGG + chr2_4:4315639-4315658 Msa0309680:CDS 45.0%
TCCGCAGTTCCTAACTTCTA+AGG + chr2_4:4315777-4315796 Msa0309680:three_prime_UTR 45.0%
CCCTTAGAAGTTAGGAACTG+CGG - chr2_4:4315781-4315800 None:intergenic 45.0%
CCGCAGTTCCTAACTTCTAA+GGG + chr2_4:4315778-4315797 Msa0309680:three_prime_UTR 45.0%
TGCGATAGAATTCTTGCTGG+GGG + chr2_4:4315845-4315864 Msa0309680:three_prime_UTR 45.0%
!! TTATTTAATATTTACAAAAT+AGG + chr2_4:4315902-4315921 Msa0309680:three_prime_UTR 5.0%
!! TATTTAATATTTACAAAATA+GGG + chr2_4:4315903-4315922 Msa0309680:three_prime_UTR 5.0%
CATTTGCGTGAACGGAGAAG+AGG - chr2_4:4311677-4311696 None:intergenic 50.0%
CTCTTCTCCGTTCACGCAAA+TGG + chr2_4:4311675-4311694 Msa0309680:exon 50.0%
GTTCACGCAAATGGGATGCA+TGG + chr2_4:4311684-4311703 Msa0309680:exon 50.0%
AAGGAGGAGATGGATGGAGT+TGG - chr2_4:4311712-4311731 None:intergenic 50.0%
GGAGATGAAGAAGGAGGAGA+TGG - chr2_4:4311722-4311741 None:intergenic 50.0%
TTGAGAGGGGGAGATGAAGA+AGG - chr2_4:4311731-4311750 None:intergenic 50.0%
! GATTTCTTTTCTTCCGGCGG+AGG - chr2_4:4311895-4311914 None:intergenic 50.0%
GAACTCTCGAACATCACCAC+CGG - chr2_4:4311988-4312007 None:intergenic 50.0%
CTCTGCTCCCAAATCACATC+AGG - chr2_4:4312081-4312100 None:intergenic 50.0%
CTCCCAAACTGCTTCACAAG+TGG - chr2_4:4312621-4312640 None:intergenic 50.0%
AGAAGAACCAGCTAATGGCG+TGG - chr2_4:4313286-4313305 None:intergenic 50.0%
CCAGCAGAAGAACCAGCTAA+TGG - chr2_4:4313291-4313310 None:intergenic 50.0%
! CCATTAGCTGGTTCTTCTGC+TGG + chr2_4:4313288-4313307 Msa0309680:CDS 50.0%
GTCTGTGCTGTAGTTGCTTC+TGG + chr2_4:4313318-4313337 Msa0309680:CDS 50.0%
!! AGTTGCTTCTGGAGCTAGCA+TGG + chr2_4:4313329-4313348 Msa0309680:CDS 50.0%
TGGCTGAAGATTGTCGGAAG+GGG + chr2_4:4313379-4313398 Msa0309680:CDS 50.0%
! TGGGGGTATGCCTCTATACT+TGG + chr2_4:4313418-4313437 Msa0309680:intron 50.0%
! ACAGCTTCTTTGGAGACCCA+GGG + chr2_4:4314585-4314604 Msa0309680:CDS 50.0%
TGATCCACCAACAAACCCCT+GGG - chr2_4:4314604-4314623 None:intergenic 50.0%
! CGAAACATCGTAGCTGGCTT+TGG - chr2_4:4314787-4314806 None:intergenic 50.0%
ACCGACATCTGCAGCACAAA+CGG + chr2_4:4314849-4314868 Msa0309680:CDS 50.0%
ACCGTTTGTGCTGCAGATGT+CGG - chr2_4:4314853-4314872 None:intergenic 50.0%
! CGTGTTTGTGCTTTTCCAGC+AGG + chr2_4:4315340-4315359 Msa0309680:CDS 50.0%
! TGCTTTTCCAGCAGGTCGTA+TGG + chr2_4:4315348-4315367 Msa0309680:CDS 50.0%
! GCTTTTCCAGCAGGTCGTAT+GGG + chr2_4:4315349-4315368 Msa0309680:CDS 50.0%
CAGGTCGTATGGGATTGCAA+GGG + chr2_4:4315359-4315378 Msa0309680:CDS 50.0%
CGTATGGGATTGCAAGGGAT+AGG + chr2_4:4315364-4315383 Msa0309680:CDS 50.0%
AATTCAGGGATACCTGACGG+GGG - chr2_4:4315426-4315445 None:intergenic 50.0%
GCGATAGAATTCTTGCTGGG+GGG + chr2_4:4315846-4315865 Msa0309680:three_prime_UTR 50.0%
ACGAGGGAAAGTCGTCATCG+TGG + chr2_4:4311571-4311590 Msa0309680:five_prime_UTR 55.0%
AGAGGGGGAGATGAAGAAGG+AGG - chr2_4:4311728-4311747 None:intergenic 55.0%
GTAACGGTGAGCTTGAGAGG+GGG - chr2_4:4311743-4311762 None:intergenic 55.0%
! GGTAACGGTGAGCTTGAGAG+GGG - chr2_4:4311744-4311763 None:intergenic 55.0%
! CGGTAACGGTGAGCTTGAGA+GGG - chr2_4:4311745-4311764 None:intergenic 55.0%
! ACGGTAACGGTGAGCTTGAG+AGG - chr2_4:4311746-4311765 None:intergenic 55.0%
! GAGTGTTGTTGAACGCGTGG+TGG - chr2_4:4311847-4311866 None:intergenic 55.0%
!! GTGGAGTGTTGTTGAACGCG+TGG - chr2_4:4311850-4311869 None:intergenic 55.0%
! TTCTTTTCTTCCGGCGGAGG+AGG - chr2_4:4311892-4311911 None:intergenic 55.0%
ACCTAAGAAAAGCTCGCCGG+TGG - chr2_4:4311929-4311948 None:intergenic 55.0%
! CAACAGCCGTGAATCGACTC+CGG + chr2_4:4311966-4311985 Msa0309680:CDS 55.0%
! TCACCACCGGAGTCGATTCA+CGG - chr2_4:4311975-4311994 None:intergenic 55.0%
CAGCTAATGGCGTGGTTTCC+TGG - chr2_4:4313278-4313297 None:intergenic 55.0%
CAGGAAACCACGCCATTAGC+TGG + chr2_4:4313276-4313295 Msa0309680:intron 55.0%
GGCTGAAGATTGTCGGAAGG+GGG + chr2_4:4313380-4313399 Msa0309680:CDS 55.0%
GCTGAAGATTGTCGGAAGGG+GGG + chr2_4:4313381-4313400 Msa0309680:CDS 55.0%
CTGAAGATTGTCGGAAGGGG+GGG + chr2_4:4313382-4313401 Msa0309680:CDS 55.0%
! CACAGCTTCTTTGGAGACCC+AGG + chr2_4:4314584-4314603 Msa0309680:CDS 55.0%
! CAGCTTCTTTGGAGACCCAG+GGG + chr2_4:4314586-4314605 Msa0309680:CDS 55.0%
TTGGAGACCCAGGGGTTTGT+TGG + chr2_4:4314594-4314613 Msa0309680:CDS 55.0%
CTGATCCACCAACAAACCCC+TGG - chr2_4:4314605-4314624 None:intergenic 55.0%
GTTTGTGCTGCAGATGTCGG+TGG - chr2_4:4314850-4314869 None:intergenic 55.0%
TGCAATCCCATACGACCTGC+TGG - chr2_4:4315358-4315377 None:intergenic 55.0%
GCAGGTCGTATGGGATTGCA+AGG + chr2_4:4315358-4315377 Msa0309680:CDS 55.0%
GCGTTCTCGGGATTGCAATC+TGG - chr2_4:4315397-4315416 None:intergenic 55.0%
TGATGCTGCTGTCTGGGCAA+AGG + chr2_4:4315587-4315606 Msa0309680:CDS 55.0%
ATTCTTGCTGGGGGGAGAAG+AGG + chr2_4:4315854-4315873 Msa0309680:three_prime_UTR 55.0%
TTCTTGCTGGGGGGAGAAGA+GGG + chr2_4:4315855-4315874 Msa0309680:three_prime_UTR 55.0%
AGGAGAGGGAGAAGGGGTTG+TGG - chr2_4:4311869-4311888 None:intergenic 60.0%
AGGAGGAGGAGAGGGAGAAG+GGG - chr2_4:4311875-4311894 None:intergenic 60.0%
GAGGAGGAGGAGAGGGAGAA+GGG - chr2_4:4311876-4311895 None:intergenic 60.0%
! TTTTCTTCCGGCGGAGGAGG+AGG - chr2_4:4311889-4311908 None:intergenic 60.0%
AAATCCTTCGCCGTCGCCAC+CGG + chr2_4:4311910-4311929 Msa0309680:CDS 60.0%
! GCCACCGGCGAGCTTTTCTT+AGG + chr2_4:4311925-4311944 Msa0309680:CDS 60.0%
GGAAGGGGGGGACTGCATTT+CGG + chr2_4:4313394-4313413 Msa0309680:CDS 60.0%
!! GAGACCCAGGGGTTTGTTGG+TGG + chr2_4:4314597-4314616 Msa0309680:CDS 60.0%
ACGGGGGCTAGATGCGTTCT+CGG - chr2_4:4315410-4315429 None:intergenic 60.0%
TCTTGCTGGGGGGAGAAGAG+GGG + chr2_4:4315856-4315875 Msa0309680:three_prime_UTR 60.0%
TGCGCGTGGGGAGAAGAGTG+AGG - chr2_4:4311810-4311829 None:intergenic 65.0%
GGAGGAGGAGGAGAGGGAGA+AGG - chr2_4:4311877-4311896 None:intergenic 65.0%
GAAAAGCTCGCCGGTGGCGA+CGG - chr2_4:4311923-4311942 None:intergenic 65.0%
! CAGCCGTGAATCGACTCCGG+TGG + chr2_4:4311969-4311988 Msa0309680:CDS 65.0%
GGGGGGACTGCATTTCGGCT+GGG + chr2_4:4313399-4313418 Msa0309680:CDS 65.0%
GGGGGACTGCATTTCGGCTG+GGG + chr2_4:4313400-4313419 Msa0309680:CDS 65.0%
GGGGACTGCATTTCGGCTGG+GGG + chr2_4:4313401-4313420 Msa0309680:CDS 65.0%
CGGGGGCTAGATGCGTTCTC+GGG - chr2_4:4315409-4315428 None:intergenic 65.0%
GAACGCATCTAGCCCCCGTC+AGG + chr2_4:4315411-4315430 Msa0309680:CDS 65.0%
TCCCTCTCCTCCTCCTCCGC+CGG + chr2_4:4311879-4311898 Msa0309680:CDS 70.0%
TCCGGCGGAGGAGGAGGAGA+GGG - chr2_4:4311883-4311902 None:intergenic 70.0%
TTCCGGCGGAGGAGGAGGAG+AGG - chr2_4:4311884-4311903 None:intergenic 70.0%
GGGGGGGACTGCATTTCGGC+TGG + chr2_4:4313398-4313417 Msa0309680:CDS 70.0%
! CTCGCCGGTGGCGACGGCGA+AGG - chr2_4:4311917-4311936 None:intergenic 80.0%
Chromosome Type Strat End Strand Name
chr2_4 gene 4311566 4316216 4311566 ID=Msa0309680;Name=Msa0309680
chr2_4 mRNA 4311566 4316216 4311566 ID=Msa0309680-mRNA-1;Parent=Msa0309680;Name=Msa0309680-mRNA-1;_AED=0.05;_eAED=0.05;_QI=128|1|1|1|1|1|7|536|405
chr2_4 exon 4311566 4312233 4311566 ID=Msa0309680-mRNA-1:exon:1472;Parent=Msa0309680-mRNA-1
chr2_4 exon 4313279 4313422 4313279 ID=Msa0309680-mRNA-1:exon:1473;Parent=Msa0309680-mRNA-1
chr2_4 exon 4314198 4314270 4314198 ID=Msa0309680-mRNA-1:exon:1474;Parent=Msa0309680-mRNA-1
chr2_4 exon 4314575 4314680 4314575 ID=Msa0309680-mRNA-1:exon:1475;Parent=Msa0309680-mRNA-1
chr2_4 exon 4314774 4314870 4314774 ID=Msa0309680-mRNA-1:exon:1476;Parent=Msa0309680-mRNA-1
chr2_4 exon 4315337 4315432 4315337 ID=Msa0309680-mRNA-1:exon:1477;Parent=Msa0309680-mRNA-1
chr2_4 exon 4315519 4316216 4315519 ID=Msa0309680-mRNA-1:exon:1478;Parent=Msa0309680-mRNA-1
chr2_4 five_prime_UTR 4311566 4311693 4311566 ID=Msa0309680-mRNA-1:five_prime_utr;Parent=Msa0309680-mRNA-1
chr2_4 CDS 4311694 4312233 4311694 ID=Msa0309680-mRNA-1:cds;Parent=Msa0309680-mRNA-1
chr2_4 CDS 4313279 4313422 4313279 ID=Msa0309680-mRNA-1:cds;Parent=Msa0309680-mRNA-1
chr2_4 CDS 4314198 4314270 4314198 ID=Msa0309680-mRNA-1:cds;Parent=Msa0309680-mRNA-1
chr2_4 CDS 4314575 4314680 4314575 ID=Msa0309680-mRNA-1:cds;Parent=Msa0309680-mRNA-1
chr2_4 CDS 4314774 4314870 4314774 ID=Msa0309680-mRNA-1:cds;Parent=Msa0309680-mRNA-1
chr2_4 CDS 4315337 4315432 4315337 ID=Msa0309680-mRNA-1:cds;Parent=Msa0309680-mRNA-1
chr2_4 CDS 4315519 4315680 4315519 ID=Msa0309680-mRNA-1:cds;Parent=Msa0309680-mRNA-1
chr2_4 three_prime_UTR 4315681 4316216 4315681 ID=Msa0309680-mRNA-1:three_prime_utr;Parent=Msa0309680-mRNA-1
Gene Sequence

>Msa0309680

ATGGGATGCATGGCTCCAACTCCATCCATCTCCTCCTTCTTCATCTCCCCCTCTCAAGCTCACCGTTACCGTCACACTTTCCGTTTCCGTTTCCGTTTCACTAACGACGTTAACCTCACTCTTCTCCCCACGCGCACTCAATTCAATTCTCCACCACGCGTTCAACAACACTCCACAACCCCTTCTCCCTCTCCTCCTCCTCCGCCGGAAGAAAAGAAATCCTTCGCCGTCGCCACCGGCGAGCTTTTCTTAGGTATAGCTTCACGTCTTATCAACAGCCGTGAATCGACTCCGGTGGTGATGTTCGAGAGTTCAAATTCGAGTTCAACGGTAATGTACAATGAGAAAGAGAGAATTGGTGCTGTTATGGAAGATGAGATTCAACCTGATGTGATTTGGGAGCAGAGAGTGAAAGATATTGAAGCGGAACGGAGTAGAAGAGTTGTAACTACTCCTGGTTTTAGTTTCTCTGCTGCTGGTCTTCTCTTTCCTTATCATCTTGGTGTTGCTCATTTTCTTATTCAGAATGGTTACATTAAGGAAACCACGCCATTAGCTGGTTCTTCTGCTGGAGCTATAGTCTGTGCTGTAGTTGCTTCTGGAGCTAGCATGGAAGAAGCTTTGATAGCTACTAAAATATTGGCTGAAGATTGTCGGAAGGGGGGGACTGCATTTCGGCTGGGGGCTGTTCTGCGTGATATTCTTCAGAAGTTTTTGCCAGATGACGTTCATATAAGATCTAATGGGAGAGTTCGAGTTGCTGTAACACAGCTTCTTTGGAGACCCAGGGGTTTGTTGGTGGATCAGTTTGATTCCAAGGAAGATCTCATCAATGCAGTTTTTACTTCTTCCTTTATTCCAGGATATCTTGCACCAAAGCCAGCTACGATGTTTCGAAATCGTTTATGCATTGATGGGGGTTTGACGTTGTTTATGCCACCGACATCTGCAGCACAAACGGTACGTGTTTGTGCTTTTCCAGCAGGTCGTATGGGATTGCAAGGGATAGGGATTAGTCCAGATTGCAATCCCGAGAACGCATCTAGCCCCCGTCAGCTTTTGAATTGGGCTCTTGAGCCAGCAGAAGATGTAATTCTTGACCGACTCTTTGAGTTTGGATATCTTGATGCTGCTGTCTGGGCAAAGGAAAACCCAGTTGAAAAACTAGTTCAAGATGATACTACTGCTCCTGCATTCGGAAATAGCATTGTACAATAG
Protein sequence

>Msa0309680

MGCMAPTPSISSFFISPSQAHRYRHTFRFRFRFTNDVNLTLLPTRTQFNSPPRVQQHSTTPSPSPPPPPEEKKSFAVATGELFLGIASRLINSRESTPVVMFESSNSSSTVMYNEKERIGAVMEDEIQPDVIWEQRVKDIEAERSRRVVTTPGFSFSAAGLLFPYHLGVAHFLIQNGYIKETTPLAGSSAGAIVCAVVASGASMEEALIATKILAEDCRKGGTAFRLGAVLRDILQKFLPDDVHIRSNGRVRVAVTQLLWRPRGLLVDQFDSKEDLINAVFTSSFIPGYLAPKPATMFRNRLCIDGGLTLFMPPTSAAQTVRVCAFPAGRMGLQGIGISPDCNPENASSPRQLLNWALEPAEDVILDRLFEFGYLDAAVWAKENPVEKLVQDDTTAPAFGNSIVQ*