AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0160080


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0160080 MtrunA17_Chr1g0173181 97.143 525 4 2 1 525 1 514 0.0 1051
Msa0160080 MtrunA17_Chr5g0407541 52.050 317 146 3 82 392 54 370 1.80e-106 323
Msa0160080 MtrunA17_Chr3g0125821 35.484 93 58 1 433 525 83 173 7.96e-11 61.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0160080 AT2G41680.1 78.368 527 103 5 5 524 6 528 0.0 851
Msa0160080 AT2G17420.1 52.244 312 143 3 82 387 61 372 2.28e-113 341
Msa0160080 AT2G17420.2 51.827 301 139 3 82 376 61 361 1.03e-107 326
Msa0160080 AT4G35460.1 51.603 312 145 3 82 387 53 364 1.65e-103 315

Find 157 sgRNAs with CRISPR-Local

Find 484 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCAGCTGCTTCTGCTATTTC+TGG 0.025232 1_4:+31950930 None:intergenic
TACCAAATGGGTGGTGTTCC+TGG 0.167134 1_4:-31956835 Msa0160080:CDS
TTCTTAACCTCTTCATGTTT+TGG 0.188984 1_4:+31952116 None:intergenic
TCAAAATTAATGTAAGAATT+TGG 0.196532 1_4:-31950200 Msa0160080:three_prime_UTR
CCTTTCAACAGTTGAGTATT+TGG 0.222014 1_4:+31954375 None:intergenic
ATTTCAGCTTGGATGATAAT+AGG 0.229047 1_4:+31950281 None:intergenic
TCACTGCTTTGGACAGTAAA+AGG 0.234446 1_4:+31956560 None:intergenic
AGAGAACTTTCCAGGATTTC+CGG 0.266594 1_4:-31956785 Msa0160080:CDS
GTTGAAAATGTGGTAATTAT+AGG 0.272616 1_4:-31956931 Msa0160080:CDS
TACCCAGAGAAGATGAATTT+TGG 0.278431 1_4:-31956097 Msa0160080:CDS
GAACACTACGGGTTTCAAAT+TGG 0.296172 1_4:+31956864 None:intergenic
TGAACGTGCTGAATTCAAAT+AGG 0.299757 1_4:+31950349 None:intergenic
GGATTTCCGGACGGGATTAC+TGG 0.307182 1_4:-31956772 Msa0160080:CDS
ACTGAAGTAGAGAACTTTCC+AGG 0.334671 1_4:-31956793 Msa0160080:CDS
GCTCCAAAATTCATCTTCTC+TGG 0.339217 1_4:+31956094 None:intergenic
TCACCTTACGTTCACTGCTT+TGG 0.363162 1_4:+31956549 None:intergenic
GCCGTAACTGCTGCTGGATC+TGG 0.371625 1_4:-31952958 Msa0160080:CDS
CAAATTCTTGCTGTCGTTGG+AGG 0.382585 1_4:-31956017 Msa0160080:CDS
CTTCTAAAGCCATGCAAGAT+AGG 0.400979 1_4:-31955908 Msa0160080:intron
GCGACGGCAAGCTGAACGTT+GGG 0.406078 1_4:-31956633 Msa0160080:CDS
GATTACTGGACCTGATCTAA+TGG 0.408689 1_4:-31956758 Msa0160080:CDS
CATTACACTTACAAAGCATA+AGG 0.410956 1_4:-31952057 Msa0160080:CDS
AACTGCGGCTGGACAGAATC+TGG 0.412743 1_4:-31950114 Msa0160080:three_prime_UTR
TTGAAGTGCACAGTGACATT+TGG 0.412823 1_4:+31954525 None:intergenic
CCCCAGGAACACCACCCATT+TGG 0.425269 1_4:+31956833 None:intergenic
ACCAAATGGGTGGTGTTCCT+GGG 0.430236 1_4:-31956834 Msa0160080:CDS
TATTTGCCTCAATGAATTCT+CGG 0.433025 1_4:+31950570 None:intergenic
AGGCAAGCCGTAACTGCTGC+TGG 0.440096 1_4:-31952964 Msa0160080:CDS
TGGAGCATCACCTCTCTTCA+AGG 0.440116 1_4:-31956042 Msa0160080:CDS
TTTCAGCTTGGATGATAATA+GGG 0.441485 1_4:+31950282 None:intergenic
AGAATGGTTACTGCGAAGAT+AGG 0.441679 1_4:-31958328 Msa0160080:CDS
GTAATCCCGTCCGGAAATCC+TGG 0.445169 1_4:+31956775 None:intergenic
TCCTCCTCCGTAGCCTCACC+AGG 0.445650 1_4:-31958121 Msa0160080:intron
CATTTAATGGGTGAGTCTAC+TGG 0.448235 1_4:-31958375 None:intergenic
ACAGTTGAGTATTTGGTGAA+TGG 0.448616 1_4:+31954382 None:intergenic
GTCTACTGGTGATGATTGTA+TGG 0.454108 1_4:-31958361 Msa0160080:five_prime_UTR
ATGAGAAGGTGAGGAGAGAG+AGG 0.459976 1_4:+31958249 None:intergenic
TAACATACCTTACTGAGGAT+TGG 0.461867 1_4:+31951841 None:intergenic
GAACGTGCTGAATTCAAATA+GGG 0.463092 1_4:+31950350 None:intergenic
TTAGTAAGAAAGCTTGATAG+TGG 0.463519 1_4:-31954450 Msa0160080:CDS
CAGTGGCAATAATTACAGTA+TGG 0.463771 1_4:+31956144 None:intergenic
AGCAGAAGCAGCTGGAATCA+TGG 0.468143 1_4:-31950922 Msa0160080:CDS
AATGTGGTAATTATAGGTTC+AGG 0.468501 1_4:-31956925 Msa0160080:CDS
TGGCTTTAGAAGCCCTTAGT+TGG 0.469141 1_4:+31955919 None:intergenic
TCCAGATCCAGCAGCAGTTA+CGG 0.469420 1_4:+31952957 None:intergenic
CAAGTTGAACTTGACCAGTC+TGG 0.471614 1_4:-31954351 Msa0160080:CDS
CCAAATGGGTGGTGTTCCTG+GGG 0.472359 1_4:-31956833 Msa0160080:CDS
AGTGTTCGAGGGTTACCAAA+TGG 0.478208 1_4:-31956848 Msa0160080:CDS
GTTGAAGGTGTATTTGCTGC+TGG 0.479454 1_4:-31954291 Msa0160080:CDS
GTGTTCGAGGGTTACCAAAT+GGG 0.480718 1_4:-31956847 Msa0160080:CDS
AAATTCTTGCTGTCGTTGGA+GGG 0.482006 1_4:-31956016 Msa0160080:CDS
TAGTAAGAAAGCTTGATAGT+GGG 0.482102 1_4:-31954449 Msa0160080:CDS
ATTACACTTACAAAGCATAA+GGG 0.483261 1_4:-31952056 Msa0160080:CDS
TATCTAGTTAACGTGAGATC+AGG 0.486126 1_4:+31950147 None:intergenic
TTGTACGTCGAGACCAACTA+AGG 0.488217 1_4:-31955932 Msa0160080:CDS
ATTCTTGCTGTCGTTGGAGG+GGG 0.488532 1_4:-31956014 Msa0160080:CDS
GTATGGTCTGTAAGAAAGAA+TGG 0.492276 1_4:-31958344 Msa0160080:exon
ATTTCCACTGTAACTGCGGC+TGG 0.495554 1_4:-31950125 Msa0160080:three_prime_UTR
TGGTAACCCTCGAACACTAC+GGG 0.495666 1_4:+31956853 None:intergenic
TGATACCTGTCCATTAGATC+AGG 0.500326 1_4:+31956748 None:intergenic
TTACGGCTTGCCTCCACTCA+TGG 0.500760 1_4:+31952974 None:intergenic
GGAGGAAGAAGTGTCGGAAG+AGG 0.501847 1_4:+31958138 None:intergenic
GGTCAAATTCTTGCTGTCGT+TGG 0.503789 1_4:-31956020 Msa0160080:CDS
CAGACTGGTCAAGTTCAACT+TGG 0.504331 1_4:+31954352 None:intergenic
TTTGAAACCCGTAGTGTTCG+AGG 0.508084 1_4:-31956860 Msa0160080:CDS
AATTGACAGCGCTATTCAGC+AGG 0.510453 1_4:+31950477 None:intergenic
AGTAAGAAAGCTTGATAGTG+GGG 0.510964 1_4:-31954448 Msa0160080:CDS
GCAGAAGCAGCTGGAATCAT+GGG 0.511150 1_4:-31950921 Msa0160080:CDS
TGAGGAGAGAGAGGAAGCAG+TGG 0.512318 1_4:+31958258 None:intergenic
TGATGAACCTGGTGAGGCTA+CGG 0.513926 1_4:+31958114 None:intergenic
TATAATACACATATAAGCCT+TGG 0.515950 1_4:+31951901 None:intergenic
AATTCTTGCTGTCGTTGGAG+GGG 0.520948 1_4:-31956015 Msa0160080:CDS
CTCCAAAATTCATCTTCTCT+GGG 0.522044 1_4:+31956095 None:intergenic
TTGGTAACCCTCGAACACTA+CGG 0.523238 1_4:+31956852 None:intergenic
CAAAATTGAATCACGGAACT+CGG 0.524284 1_4:+31950513 None:intergenic
ACCTGGTGAGGCTACGGAGG+AGG 0.524573 1_4:+31958120 None:intergenic
AATACAAAAGGACAGATGTC+TGG 0.526372 1_4:-31954477 Msa0160080:CDS
AAAACATGAAGAGGTTAAGA+AGG 0.526385 1_4:-31952114 Msa0160080:CDS
GAGCAACTGCAAAACGACTT+AGG 0.527739 1_4:-31956121 Msa0160080:CDS
ATATAAGCCTTGGACTATCA+TGG 0.534266 1_4:+31951911 None:intergenic
CATTGTCATCAACGAGAAGC+TGG 0.535985 1_4:+31950322 None:intergenic
ACTGCGAAGATAGGACTCTT+CGG 0.537342 1_4:-31958319 Msa0160080:CDS
AAGAAGTGTCGGAAGAGGCT+CGG 0.538210 1_4:+31958143 None:intergenic
ACTTTCCAGGATTTCCGGAC+GGG 0.538593 1_4:-31956780 Msa0160080:CDS
CCAGAAATAGCAGAAGCAGC+TGG 0.539369 1_4:-31950930 Msa0160080:CDS
ATTGAAGCCAATCCTCAGTA+AGG 0.540059 1_4:-31951848 Msa0160080:intron
TCTTCTTATAGAGTTCCATC+AGG 0.540274 1_4:-31952890 Msa0160080:intron
ATTATAGGTTCAGGTCCTGC+AGG 0.542012 1_4:-31956916 Msa0160080:CDS
GATATTGTGAGCAATACAAA+AGG 0.548161 1_4:-31954489 Msa0160080:CDS
TGTCCAAAGCAGTGAACGTA+AGG 0.549292 1_4:-31956552 Msa0160080:intron
ATTGCTGCTGTGTATCCTGC+AGG 0.551544 1_4:+31956901 None:intergenic
TACGGAGGAGGAAGAAGTGT+CGG 0.554402 1_4:+31958132 None:intergenic
TGGCTACTTACTAGTTAAAG+AGG 0.556564 1_4:-31954331 Msa0160080:CDS
ATTTGCTGCTGGAGATGTGC+AGG 0.558112 1_4:-31954280 Msa0160080:intron
TTAAGAAGGAATTAACAGAC+AGG 0.558919 1_4:-31952100 Msa0160080:CDS
AGTGCTTGTGCAATTTGTGA+TGG 0.559766 1_4:-31956062 Msa0160080:CDS
TCAGGTCCAGTAATCCCGTC+CGG 0.561894 1_4:+31956766 None:intergenic
TCGGACACACCTATCTTGCA+TGG 0.562404 1_4:+31955899 None:intergenic
TATGATCAGTCATTTCAGCT+TGG 0.563162 1_4:+31950270 None:intergenic
AGTCAGTGCTTGAGGCCAAA+GGG 0.565727 1_4:-31954422 Msa0160080:CDS
GAGAGGAAGCAGTGGTGACA+CGG 0.566619 1_4:+31958266 None:intergenic
TATGCCGTAGAATAGCCCTT+TGG 0.566889 1_4:+31954407 None:intergenic
TGGGGAGGAGTCAGTGCTTG+AGG 0.568768 1_4:-31954430 Msa0160080:CDS
GAGGCCAAAGGGCTATTCTA+CGG 0.570443 1_4:-31954411 Msa0160080:CDS
CTGGACCTGATCTAATGGAC+AGG 0.572406 1_4:-31956753 Msa0160080:intron
TGCGACGGCAAGCTGAACGT+TGG 0.574702 1_4:-31956634 Msa0160080:CDS
TAACTAGTAAGTAGCCAGAC+TGG 0.575521 1_4:+31954337 None:intergenic
CCAAATACTCAACTGTTGAA+AGG 0.576006 1_4:-31954375 Msa0160080:CDS
AAGAAAGCTTGATAGTGGGG+AGG 0.580489 1_4:-31954445 Msa0160080:CDS
AATAGATGTTTCTGCAACAG+TGG 0.581744 1_4:-31950176 Msa0160080:three_prime_UTR
TTGAAACCCGTAGTGTTCGA+GGG 0.585198 1_4:-31956859 Msa0160080:CDS
ACTTACAAAGCATAAGGGGC+AGG 0.590481 1_4:-31952051 Msa0160080:intron
GTAACAGCCAAAACATGAAG+AGG 0.591993 1_4:-31952123 Msa0160080:intron
GAGTCAGTGCTTGAGGCCAA+AGG 0.592233 1_4:-31954423 Msa0160080:CDS
GGTGACACGGTGGTTGTGAG+TGG 0.593710 1_4:+31958279 None:intergenic
GGAGCATCACCTCTCTTCAA+GGG 0.594248 1_4:-31956041 Msa0160080:CDS
GAAACGATGATGAGAAGGTG+AGG 0.595275 1_4:+31958240 None:intergenic
TTGAAAACAAAATTGAATCA+CGG 0.596618 1_4:+31950506 None:intergenic
AATTGTACCATGATAGTCCA+AGG 0.599012 1_4:-31951918 Msa0160080:CDS
AACAGACAGGGATGTTCAAG+CGG 0.600644 1_4:-31952087 Msa0160080:CDS
CATACTGTAATTATTGCCAC+TGG 0.600711 1_4:-31956143 Msa0160080:CDS
AGAATTTGACCCTTGAAGAG+AGG 0.605923 1_4:+31956032 None:intergenic
TTCTTTAACATACCTTACTG+AGG 0.607014 1_4:+31951836 None:intergenic
TCTACTTGTCTAGGATGCGA+CGG 0.607303 1_4:-31956649 Msa0160080:intron
AACTTTCCAGGATTTCCGGA+CGG 0.607601 1_4:-31956781 Msa0160080:CDS
ACAGACAGGGATGTTCAAGC+GGG 0.607683 1_4:-31952086 Msa0160080:CDS
TGTTCTCATAGGACCATGAG+TGG 0.609661 1_4:-31952987 Msa0160080:intron
GTGACACGGTGGTTGTGAGT+GGG 0.610611 1_4:+31958280 None:intergenic
CTGTCCAGCCGCAGTTACAG+TGG 0.617990 1_4:+31950121 None:intergenic
GAGAGATATCTCGTCAGCAG+TGG 0.622694 1_4:-31952913 Msa0160080:CDS
AAGTAATGATGAACCTGGTG+AGG 0.625517 1_4:+31958108 None:intergenic
TTACACTTACAAAGCATAAG+GGG 0.626930 1_4:-31952055 Msa0160080:CDS
AGGTAACGCAGTTGAAAATG+TGG 0.629242 1_4:-31956941 Msa0160080:CDS
AGATATTTCCACTGTAACTG+CGG 0.632479 1_4:-31950129 Msa0160080:three_prime_UTR
AAGATGAAACGATGATGAGA+AGG 0.634067 1_4:+31958235 None:intergenic
ACACGGTGGTTGTGAGTGGG+AGG 0.635165 1_4:+31958283 None:intergenic
CACCGACATGTGGTCCGTGT+CGG 0.640430 1_4:-31951873 Msa0160080:CDS
CGACGGCAAGCTGAACGTTG+GGG 0.642828 1_4:-31956632 Msa0160080:CDS
GTTAACGTGAGATCAGGAAG+TGG 0.648420 1_4:+31950153 None:intergenic
TTCGAGGGTTACCAAATGGG+TGG 0.652902 1_4:-31956844 Msa0160080:CDS
AAGAACGAGAACGAAGAGAG+CGG 0.654263 1_4:+31958200 None:intergenic
GGCTACTTACTAGTTAAAGA+GGG 0.659261 1_4:-31954330 Msa0160080:CDS
AAAGGGCTATTCTACGGCAT+AGG 0.659759 1_4:-31954405 Msa0160080:CDS
GTCCGACACGGACCACATGT+CGG 0.665457 1_4:+31951871 None:intergenic
GCACTTCAATACAGAGACTG+TGG 0.669081 1_4:-31954511 Msa0160080:CDS
CAAATATAATGCTTCCTCTG+TGG 0.673525 1_4:+31955983 None:intergenic
CAAATGGGTGGTGTTCCTGG+GGG 0.675789 1_4:-31956832 Msa0160080:CDS
TGAACCTGGTGAGGCTACGG+AGG 0.676346 1_4:+31958117 None:intergenic
TTATACACGTCACCGACATG+TGG 0.678629 1_4:-31951883 Msa0160080:CDS
TGTACGTCGAGACCAACTAA+GGG 0.681720 1_4:-31955931 Msa0160080:CDS
TAAGAAGGAATTAACAGACA+GGG 0.686949 1_4:-31952099 Msa0160080:CDS
AGAATACCGAGAATTCATTG+AGG 0.687192 1_4:-31950576 Msa0160080:CDS
ATTGGCTTCAATGTCCGACA+CGG 0.691173 1_4:+31951859 None:intergenic
TCTCATAGGACCATGAGTGG+AGG 0.707926 1_4:-31952984 Msa0160080:intron
AGGAAGCAGTGGTGACACGG+TGG 0.735819 1_4:+31958269 None:intergenic
GAAGATAGGACTCTTCGGAG+TGG 0.740267 1_4:-31958314 Msa0160080:CDS
GCTTCTCGTTGATGACAATG+TGG 0.771217 1_4:-31950319 Msa0160080:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATATTGAAATTTAGTTATA+TGG - chr1_4:31950574-31950593 Msa0160080:CDS 10.0%
!!! ATTTTAACTTATAAACTAAT+TGG - chr1_4:31952030-31952049 Msa0160080:intron 10.0%
!! AAAAAATGTAAAATTAATAG+AGG - chr1_4:31954971-31954990 Msa0160080:intron 10.0%
!!! AAAATTGATGTTTTATAAAT+TGG - chr1_4:31955717-31955736 Msa0160080:intron 10.0%
!! ATAATATTCATTAAGATATA+TGG - chr1_4:31957666-31957685 Msa0160080:intron 10.0%
!! TCATTAACTACAATAATTAA+GGG + chr1_4:31951019-31951038 None:intergenic 15.0%
!! AAGTTAAAATCTTGAAATTT+CGG + chr1_4:31952020-31952039 None:intergenic 15.0%
!! TGAATAATGAAAAAATATGA+AGG + chr1_4:31952970-31952989 None:intergenic 15.0%
!!! TTTATGTCAATAATTTGTAT+TGG - chr1_4:31953193-31953212 Msa0160080:intron 15.0%
!!! TTATGTCAATAATTTGTATT+GGG - chr1_4:31953194-31953213 Msa0160080:intron 15.0%
!! TACAACAAATATAATTAACT+TGG - chr1_4:31953220-31953239 Msa0160080:intron 15.0%
!! AAAAAAATTAACTGTTTAGT+TGG - chr1_4:31954374-31954393 Msa0160080:CDS 15.0%
!! TTTGATTGAAAATTAATCAT+CGG + chr1_4:31954740-31954759 None:intergenic 15.0%
!! AATCAACAATAAATACTATA+AGG + chr1_4:31954947-31954966 None:intergenic 15.0%
!! AATATAAGTGCTTATAAAAT+TGG + chr1_4:31955634-31955653 None:intergenic 15.0%
!! AAAAACTTCATAAATTGTAT+AGG - chr1_4:31955749-31955768 Msa0160080:intron 15.0%
!! TATTTGATAAGAAAGTTAAT+TGG - chr1_4:31955783-31955802 Msa0160080:intron 15.0%
!! AATGTTAGTAAAATAATAAC+AGG - chr1_4:31956257-31956276 Msa0160080:intron 15.0%
!! TCATTTAATGTTTGATTATT+TGG - chr1_4:31956477-31956496 Msa0160080:intron 15.0%
!! TATATAAGAGAATACATTAA+TGG - chr1_4:31957353-31957372 Msa0160080:intron 15.0%
!!! TTTTTTTTCAAAACTTTTCA+TGG - chr1_4:31957466-31957485 Msa0160080:intron 15.0%
!!! TTCAATTTTGTTTTCAATAT+TGG - chr1_4:31957979-31957998 Msa0160080:intron 15.0%
!! TCAAAATTAATGTAAGAATT+TGG - chr1_4:31958279-31958298 Msa0160080:CDS 15.0%
!! ATTGAAATTTAGTTATATGG+AGG - chr1_4:31950577-31950596 Msa0160080:CDS 20.0%
!!! TGAAATTGATTACTTTTGTT+TGG - chr1_4:31950673-31950692 Msa0160080:intron 20.0%
!! AGTATTTCATAAGAATTGAA+TGG - chr1_4:31950733-31950752 Msa0160080:intron 20.0%
!! CTCATTAACTACAATAATTA+AGG + chr1_4:31951020-31951039 None:intergenic 20.0%
!! CTTAATTATTGTAGTTAATG+AGG - chr1_4:31951018-31951037 Msa0160080:intron 20.0%
!!! ATTATTATTGGTTGTATGTT+TGG + chr1_4:31951104-31951123 None:intergenic 20.0%
!!! GTGACAATTATTTTGATATA+TGG + chr1_4:31951168-31951187 None:intergenic 20.0%
!!! TATCAAAATAATTGTCACTT+TGG - chr1_4:31951170-31951189 Msa0160080:intron 20.0%
!! AGTTAAAATCTTGAAATTTC+GGG + chr1_4:31952019-31952038 None:intergenic 20.0%
!!! ATCTTCTTTGTGATATTTTA+TGG - chr1_4:31952061-31952080 Msa0160080:CDS 20.0%
!!! ATTTGATAGTCAGTTTTATT+TGG - chr1_4:31952109-31952128 Msa0160080:CDS 20.0%
!! TGTATATAAATCAAAAGTGA+TGG + chr1_4:31952211-31952230 None:intergenic 20.0%
!! CTTACAATTATAGATTGTAA+TGG + chr1_4:31952731-31952750 None:intergenic 20.0%
!!! TAGTTAGATCAATCTTTTAA+AGG - chr1_4:31952920-31952939 Msa0160080:CDS 20.0%
!! AAAAAATGAAGCAAAAACAA+AGG + chr1_4:31953078-31953097 None:intergenic 20.0%
!! TTAATGTGTAATACATTTGA+TGG - chr1_4:31953127-31953146 Msa0160080:intron 20.0%
!! TAATGTGTAATACATTTGAT+GGG - chr1_4:31953128-31953147 Msa0160080:intron 20.0%
!!! TTTCTATTAACTGATTTGTT+AGG - chr1_4:31953163-31953182 Msa0160080:intron 20.0%
!!! TATGTCAATAATTTGTATTG+GGG - chr1_4:31953195-31953214 Msa0160080:intron 20.0%
!! ATCAAACACATTATGTTATT+AGG + chr1_4:31953454-31953473 None:intergenic 20.0%
!!! TAAAATTTTAGGTTAGCAAA+AGG - chr1_4:31953743-31953762 Msa0160080:intron 20.0%
!!! AAAATTTTAGGTTAGCAAAA+GGG - chr1_4:31953744-31953763 Msa0160080:intron 20.0%
!! ATTGTAGAATTGAAATTAGA+AGG + chr1_4:31954528-31954547 None:intergenic 20.0%
!!! GATATTATTCTAGAATATCT+TGG - chr1_4:31954707-31954726 Msa0160080:intron 20.0%
!! TGTATATTAGATTAATTCCT+AGG - chr1_4:31954761-31954780 Msa0160080:intron 20.0%
!! ATGCAATTAAAAATTCAAAG+AGG - chr1_4:31955021-31955040 Msa0160080:intron 20.0%
!! TGCAATTAAAAATTCAAAGA+GGG - chr1_4:31955022-31955041 Msa0160080:intron 20.0%
!! AGTCTATTTATCCTTAAATA+GGG - chr1_4:31955138-31955157 Msa0160080:intron 20.0%
!! ATTATATTGATCCCTATTTA+AGG + chr1_4:31955152-31955171 None:intergenic 20.0%
!! TTATCCTTATAATGTAGTTA+AGG - chr1_4:31955176-31955195 Msa0160080:intron 20.0%
!! TAATCCTTAACTACATTATA+AGG + chr1_4:31955183-31955202 None:intergenic 20.0%
!! CTTAACATTTAATGTTCTTA+AGG - chr1_4:31955280-31955299 Msa0160080:intron 20.0%
!!! ATCAAAAGTGTACATATTTA+AGG + chr1_4:31955379-31955398 None:intergenic 20.0%
!!! TATCACTTTTTCATACAAAA+AGG + chr1_4:31955437-31955456 None:intergenic 20.0%
!!! CTTATAAGCTTTTAAGTTAT+TGG - chr1_4:31956212-31956231 Msa0160080:intron 20.0%
!! CAAACATTAAATGAACTAAT+TGG + chr1_4:31956471-31956490 None:intergenic 20.0%
!!! TCAATTTTCAAAAAGAAACA+AGG + chr1_4:31956823-31956842 None:intergenic 20.0%
!! TTTCCAAGAATTAATTAATG+TGG + chr1_4:31956939-31956958 None:intergenic 20.0%
!!! TTCTATCATAAACCATATTT+TGG - chr1_4:31957164-31957183 Msa0160080:intron 20.0%
!!! TTTTGTTGAAATTGATATAG+AGG - chr1_4:31957521-31957540 Msa0160080:intron 20.0%
!! ACAGTTAAAGTTTATATCTT+GGG + chr1_4:31957721-31957740 None:intergenic 20.0%
!! AACAGTTAAAGTTTATATCT+TGG + chr1_4:31957722-31957741 None:intergenic 20.0%
!! AAGTACATAAAAACATTCAA+GGG - chr1_4:31957937-31957956 Msa0160080:intron 20.0%
!! TTGAAAACAAAATTGAATCA+CGG + chr1_4:31957976-31957995 None:intergenic 20.0%
!!! GAAATTTTGATGTTAAGTGT+CGG - chr1_4:31950501-31950520 Msa0160080:three_prime_UTR 25.0%
!! AGAGTTAATTGTGGTAATTT+TGG - chr1_4:31950601-31950620 Msa0160080:CDS 25.0%
! ATTTCATAAGAATTGAATGG+AGG - chr1_4:31950736-31950755 Msa0160080:intron 25.0%
! TTTCATAAGAATTGAATGGA+GGG - chr1_4:31950737-31950756 Msa0160080:intron 25.0%
! TCGAGAATAAGTACTTAAAA+TGG - chr1_4:31950833-31950852 Msa0160080:intron 25.0%
! ATGTGACATTTAATCTAAGA+CGG + chr1_4:31950918-31950937 None:intergenic 25.0%
!!! AAATGTGACATTTTTTGAGA+CGG + chr1_4:31951136-31951155 None:intergenic 25.0%
! TCCTGTTTATAAGAGAAAAT+TGG - chr1_4:31951225-31951244 Msa0160080:intron 25.0%
! CCTGTTTATAAGAGAAAATT+GGG - chr1_4:31951226-31951245 Msa0160080:intron 25.0%
! TCTCTCTATATTTCAATAAG+AGG + chr1_4:31951363-31951382 None:intergenic 25.0%
! GTTGAAAATGTGGTAATTAT+AGG - chr1_4:31951548-31951567 Msa0160080:intron 25.0%
!! TAACTTGCATAAATAAACCT+TGG - chr1_4:31951794-31951813 Msa0160080:intron 25.0%
! GTTAAAATCTTGAAATTTCG+GGG + chr1_4:31952018-31952037 None:intergenic 25.0%
! AAACAATAATATCCAATTCG+TGG - chr1_4:31952253-31952272 Msa0160080:intron 25.0%
! CAATTATAGATTGTAATGGT+AGG + chr1_4:31952727-31952746 None:intergenic 25.0%
!! TTAAAACTCTAATTTTCCAG+AGG + chr1_4:31952893-31952912 None:intergenic 25.0%
! AACAAACACATACTTAATCT+AGG + chr1_4:31953255-31953274 None:intergenic 25.0%
! TTCTCTATTATCAATTCTCA+AGG + chr1_4:31953313-31953332 None:intergenic 25.0%
! ATAGAGAAGCTAAAAATTGT+AGG - chr1_4:31953325-31953344 Msa0160080:intron 25.0%
! TGTCTAAATTGTCATTCAAT+AGG - chr1_4:31953563-31953582 Msa0160080:intron 25.0%
! GTCTAAATTGTCATTCAATA+GGG - chr1_4:31953564-31953583 Msa0160080:intron 25.0%
! ATGTTACGTGATTATATATC+TGG - chr1_4:31953599-31953618 Msa0160080:intron 25.0%
!! GTTTTACAAGAAAAATAGAG+AGG - chr1_4:31954461-31954480 Msa0160080:CDS 25.0%
! ATAAACTAATTCTCTCTTGA+AGG + chr1_4:31954919-31954938 None:intergenic 25.0%
!! AAGGGTCAATTTTTATTAAG+AGG - chr1_4:31955054-31955073 Msa0160080:intron 25.0%
!! AGGGTCAATTTTTATTAAGA+GGG - chr1_4:31955055-31955074 Msa0160080:intron 25.0%
! GAGTCTATTTATCCTTAAAT+AGG - chr1_4:31955137-31955156 Msa0160080:intron 25.0%
! AATTTGTGTATTCAATGCAT+TGG + chr1_4:31955250-31955269 None:intergenic 25.0%
!! GTACATATTTAAGGTGAAAA+GGG + chr1_4:31955370-31955389 None:intergenic 25.0%
!! TGTACATATTTAAGGTGAAA+AGG + chr1_4:31955371-31955390 None:intergenic 25.0%
! TGAAAAAGTGATAATTGCTT+AGG - chr1_4:31955444-31955463 Msa0160080:intron 25.0%
! AAGAAATAACCTTAACATAG+GGG + chr1_4:31955470-31955489 None:intergenic 25.0%
! GAAGAAATAACCTTAACATA+GGG + chr1_4:31955471-31955490 None:intergenic 25.0%
! AGAAGAAATAACCTTAACAT+AGG + chr1_4:31955472-31955491 None:intergenic 25.0%
!! TTATTTCTTCTTGTTCTCAT+AGG - chr1_4:31955481-31955500 Msa0160080:intron 25.0%
! CTTTAAACTAAAATACCTGA+TGG + chr1_4:31955607-31955626 None:intergenic 25.0%
! TACGATGCTATATAATATAC+AGG + chr1_4:31955660-31955679 None:intergenic 25.0%
!! TAAGTTCCTCAAAATTTTGT+TGG - chr1_4:31955818-31955837 Msa0160080:intron 25.0%
! CATATTATCTATTGCTCTTT+AGG - chr1_4:31956088-31956107 Msa0160080:CDS 25.0%
! CTTAAAAGCTTATAAGCATA+TGG + chr1_4:31956208-31956227 None:intergenic 25.0%
!!! ATAAGCTTTTAAGTTATTGG+TGG - chr1_4:31956215-31956234 Msa0160080:intron 25.0%
! TAATTTCCAATATGAATCTC+AGG - chr1_4:31956316-31956335 Msa0160080:intron 25.0%
! ATTACACTTACAAAGCATAA+GGG - chr1_4:31956423-31956442 Msa0160080:intron 25.0%
! AATGAACTAATTGGAGATAA+AGG + chr1_4:31956462-31956481 None:intergenic 25.0%
! TATAATACACATATAAGCCT+TGG + chr1_4:31956581-31956600 None:intergenic 25.0%
! TAAGGTATGTTAAAGAACAA+TGG - chr1_4:31956649-31956668 Msa0160080:intron 25.0%
! GAATTAATTAATGTGGCATA+CGG + chr1_4:31956932-31956951 None:intergenic 25.0%
! ATGCCACATTAATTAATTCT+TGG - chr1_4:31956933-31956952 Msa0160080:CDS 25.0%
!! AATATTTGCATTTTGCTTGA+AGG + chr1_4:31957034-31957053 None:intergenic 25.0%
! GCAAAATGCAAATATTCTAA+TGG - chr1_4:31957038-31957057 Msa0160080:intron 25.0%
! TGGTTTATGATAGAACATTA+TGG + chr1_4:31957159-31957178 None:intergenic 25.0%
! AAACTTAGAGATTAATGAGT+TGG + chr1_4:31957191-31957210 None:intergenic 25.0%
!!! GTTTCTCTTTTAGTTTTTCT+AGG - chr1_4:31957220-31957239 Msa0160080:intron 25.0%
! ATTTCAAATCTTGATCATGA+AGG + chr1_4:31957287-31957306 None:intergenic 25.0%
!!! TTTTTAAAAAACTGCACACA+CGG + chr1_4:31957588-31957607 None:intergenic 25.0%
!!! TGTGCAGTTTTTTAAAAACA+AGG - chr1_4:31957590-31957609 Msa0160080:intron 25.0%
! AGTTAAAGTTTATATCTTGG+GGG + chr1_4:31957719-31957738 None:intergenic 25.0%
! CAGTTAAAGTTTATATCTTG+GGG + chr1_4:31957720-31957739 None:intergenic 25.0%
! TTGTTAGTTACTACAATGAT+AGG + chr1_4:31957749-31957768 None:intergenic 25.0%
!! AATCTGTTTAGAACAAAAGA+TGG + chr1_4:31957791-31957810 None:intergenic 25.0%
! GAAGTACATAAAAACATTCA+AGG - chr1_4:31957936-31957955 Msa0160080:intron 25.0%
! TAAAAATGCTGATCAGTTTA+AGG + chr1_4:31958040-31958059 None:intergenic 25.0%
!!! AAGGTTACGATGCATTTTTT+TGG - chr1_4:31950531-31950550 Msa0160080:three_prime_UTR 30.0%
!!! GCATTTTTTTGGTCTGTTAT+TGG - chr1_4:31950542-31950561 Msa0160080:three_prime_UTR 30.0%
TAATTTACGGCTTAAATGTC+AGG + chr1_4:31950876-31950895 None:intergenic 30.0%
TAGTTGGCTAGCATAATTTA+CGG + chr1_4:31950889-31950908 None:intergenic 30.0%
! ATTGCTATCAATCCTAGTTT+TGG - chr1_4:31951063-31951082 Msa0160080:intron 30.0%
! AATTTTCCTAGACCAAAACT+AGG + chr1_4:31951078-31951097 None:intergenic 30.0%
! CGGGTTGTTGTTATTATTAT+TGG + chr1_4:31951116-31951135 None:intergenic 30.0%
!!! AATGTGACATTTTTTGAGAC+GGG + chr1_4:31951135-31951154 None:intergenic 30.0%
TCAACATTTATTACTACCTC+CGG - chr1_4:31951202-31951221 Msa0160080:intron 30.0%
! TTTTCTCTTATAAACAGGAC+CGG + chr1_4:31951224-31951243 None:intergenic 30.0%
! CCCAATTTTCTCTTATAAAC+AGG + chr1_4:31951229-31951248 None:intergenic 30.0%
! CCTTTTTATAGGAGAAACTT+GGG + chr1_4:31951311-31951330 None:intergenic 30.0%
! TCCTTTTTATAGGAGAAACT+TGG + chr1_4:31951312-31951331 None:intergenic 30.0%
TCAGTGAGAACCAAAATTAT+TGG - chr1_4:31951394-31951413 Msa0160080:intron 30.0%
!! AACCAAAATTATTGGCTTGT+AGG - chr1_4:31951402-31951421 Msa0160080:intron 30.0%
! AACCTACAAGCCAATAATTT+TGG + chr1_4:31951407-31951426 None:intergenic 30.0%
AATGTGGTAATTATAGGTTC+AGG - chr1_4:31951554-31951573 Msa0160080:intron 30.0%
TAGAAAATTTGTGAACTCCA+AGG + chr1_4:31951814-31951833 None:intergenic 30.0%
! CACAAATTTTCTACTTGTCT+AGG - chr1_4:31951821-31951840 Msa0160080:intron 30.0%
CAAATGATTCATCATATGGT+CGG + chr1_4:31952188-31952207 None:intergenic 30.0%
ATGGCAAATGATTCATCATA+TGG + chr1_4:31952192-31952211 None:intergenic 30.0%
AATATCCAATTCGTGGTATA+TGG - chr1_4:31952260-31952279 Msa0160080:intron 30.0%
ATATCCAATTCGTGGTATAT+GGG - chr1_4:31952261-31952280 Msa0160080:intron 30.0%
! ACCTTTTCTTGATTACATTC+AGG - chr1_4:31952305-31952324 Msa0160080:intron 30.0%
ACCTGAATGTAATCAAGAAA+AGG + chr1_4:31952309-31952328 None:intergenic 30.0%
GAGAGTTGGGAAATATTAAT+CGG + chr1_4:31952602-31952621 None:intergenic 30.0%
ATAGATTGTAATGGTAGGAT+CGG + chr1_4:31952722-31952741 None:intergenic 30.0%
! ATTATGAAGTGTTTAAGAGC+AGG + chr1_4:31952770-31952789 None:intergenic 30.0%
AGAGAGTGGATAAACTAAAA+GGG + chr1_4:31952797-31952816 None:intergenic 30.0%
TATAAGCTCAAGTGAACATA+AGG + chr1_4:31953028-31953047 None:intergenic 30.0%
ATCATAATTCTCTTCTCACA+TGG - chr1_4:31953472-31953491 Msa0160080:intron 30.0%
! ACTACCAGCTGTAAAATTTT+AGG - chr1_4:31953732-31953751 Msa0160080:intron 30.0%
! CTAACCTAAAATTTTACAGC+TGG + chr1_4:31953739-31953758 None:intergenic 30.0%
CTATTTCGACTTCTTTATGA+AGG - chr1_4:31953833-31953852 Msa0160080:intron 30.0%
AACCTGTTAAACAAACATTC+AGG + chr1_4:31953902-31953921 None:intergenic 30.0%
GATATTGTGAGCAATACAAA+AGG - chr1_4:31953990-31954009 Msa0160080:intron 30.0%
TTAGTAAGAAAGCTTGATAG+TGG - chr1_4:31954029-31954048 Msa0160080:intron 30.0%
! TAGTAAGAAAGCTTGATAGT+GGG - chr1_4:31954030-31954049 Msa0160080:intron 30.0%
GAGTCTATGTTTGAAAGAAT+AGG - chr1_4:31954266-31954285 Msa0160080:intron 30.0%
! TAAGTAGCTATAAGCCTTTT+AGG - chr1_4:31954414-31954433 Msa0160080:CDS 30.0%
! AAGTAGCTATAAGCCTTTTA+GGG - chr1_4:31954415-31954434 Msa0160080:CDS 30.0%
CAAGATTGAACATAGATCAA+TGG + chr1_4:31954552-31954571 None:intergenic 30.0%
GAGATATGGAAATTTATCCT+AGG + chr1_4:31954781-31954800 None:intergenic 30.0%
AATGTAGTAATGACGAGATA+TGG + chr1_4:31954795-31954814 None:intergenic 30.0%
ACTACATTTGTCCCTAAATA+TGG - chr1_4:31954807-31954826 Msa0160080:intron 30.0%
CTACATTTGTCCCTAAATAT+GGG - chr1_4:31954808-31954827 Msa0160080:intron 30.0%
ATCACGAGAATTAAGAATGT+TGG - chr1_4:31954845-31954864 Msa0160080:intron 30.0%
! TCAAAGAGGGTCTTATAAAA+AGG - chr1_4:31955035-31955054 Msa0160080:intron 30.0%
! CAAAGAGGGTCTTATAAAAA+GGG - chr1_4:31955036-31955055 Msa0160080:intron 30.0%
! ATTAAGAGGGTCTTGTATTT+AGG - chr1_4:31955068-31955087 Msa0160080:intron 30.0%
! TTAAGAGGGTCTTGTATTTA+GGG - chr1_4:31955069-31955088 Msa0160080:intron 30.0%
GACTCAATCCTAAATAAGTA+GGG + chr1_4:31955122-31955141 None:intergenic 30.0%
AGACTCAATCCTAAATAAGT+AGG + chr1_4:31955123-31955142 None:intergenic 30.0%
GATTTGATATAGAAGACCAA+GGG + chr1_4:31955334-31955353 None:intergenic 30.0%
! TTCCTCAAAATTTTGTTGGT+GGG - chr1_4:31955822-31955841 Msa0160080:intron 30.0%
!! AAAATTTTGTTGGTGGGTAA+TGG - chr1_4:31955828-31955847 Msa0160080:intron 30.0%
TAATGGTAAGTAGTTATCAG+TGG - chr1_4:31955845-31955864 Msa0160080:intron 30.0%
! CATAATTTGATGACACAATG+AGG - chr1_4:31955924-31955943 Msa0160080:CDS 30.0%
! TATAATTTGTCCTCACGTAA+AGG + chr1_4:31956015-31956034 None:intergenic 30.0%
TTACGTGAGGACAAATTATA+AGG - chr1_4:31956015-31956034 Msa0160080:CDS 30.0%
TTGAAATAACTAAGTGTAGC+AGG + chr1_4:31956050-31956069 None:intergenic 30.0%
ATCAGAATCCTTTCAAAGAA+AGG - chr1_4:31956112-31956131 Msa0160080:CDS 30.0%
AACTATGTCCTTTCTTTGAA+AGG + chr1_4:31956123-31956142 None:intergenic 30.0%
! TTCTTAACCTCTTCATGTTT+TGG + chr1_4:31956366-31956385 None:intergenic 30.0%
AAAACATGAAGAGGTTAAGA+AGG - chr1_4:31956365-31956384 Msa0160080:intron 30.0%
TTAAGAAGGAATTAACAGAC+AGG - chr1_4:31956379-31956398 Msa0160080:intron 30.0%
TAAGAAGGAATTAACAGACA+GGG - chr1_4:31956380-31956399 Msa0160080:intron 30.0%
CATTACACTTACAAAGCATA+AGG - chr1_4:31956422-31956441 Msa0160080:intron 30.0%
TTACACTTACAAAGCATAAG+GGG - chr1_4:31956424-31956443 Msa0160080:intron 30.0%
TTCTTTAACATACCTTACTG+AGG + chr1_4:31956646-31956665 None:intergenic 30.0%
GTTAGATATCATAGTACTCA+TGG - chr1_4:31956698-31956717 Msa0160080:intron 30.0%
ATGATACATGAGTACTTTCA+AGG - chr1_4:31956744-31956763 Msa0160080:intron 30.0%
! GACAATTGTCTTTTGTTAGA+TGG - chr1_4:31956782-31956801 Msa0160080:CDS 30.0%
! AATTGTCTTTTGTTAGATGG+TGG - chr1_4:31956785-31956804 Msa0160080:CDS 30.0%
! TAATGAGTTGGACCAAAATA+TGG + chr1_4:31957179-31957198 None:intergenic 30.0%
AGAAGATGATTATTCCTTAG+AGG + chr1_4:31957256-31957275 None:intergenic 30.0%
ATTGACAATACCATCAAACA+AGG + chr1_4:31957424-31957443 None:intergenic 30.0%
! TTTTCAAAACTTTTCATGGC+AGG - chr1_4:31957470-31957489 Msa0160080:intron 30.0%
! TTGTTCTAAACAGATTTGAG+AGG - chr1_4:31957795-31957814 Msa0160080:intron 30.0%
TATTTGCCTCAATGAATTCT+CGG + chr1_4:31957912-31957931 None:intergenic 30.0%
TTTCAGCTTGGATGATAATA+GGG + chr1_4:31958200-31958219 None:intergenic 30.0%
ATTTCAGCTTGGATGATAAT+AGG + chr1_4:31958201-31958220 None:intergenic 30.0%
GTATGGTCTGTAAGAAAGAA+TGG - chr1_4:31950135-31950154 Msa0160080:three_prime_UTR 35.0%
AAGATGAAACGATGATGAGA+AGG + chr1_4:31950247-31950266 None:intergenic 35.0%
CAAATTCGCACTAGTGTTAT+AGG - chr1_4:31950424-31950443 Msa0160080:three_prime_UTR 35.0%
TATGGAGGAAGAGTTAATTG+TGG - chr1_4:31950592-31950611 Msa0160080:CDS 35.0%
!! TTTGGTGTCAATATCGTGTT+AGG - chr1_4:31950691-31950710 Msa0160080:intron 35.0%
AGGGTAGTTGTTAAAGGATT+TGG - chr1_4:31950756-31950775 Msa0160080:intron 35.0%
GTTGTTAAAGGATTTGGAGA+TGG - chr1_4:31950762-31950781 Msa0160080:intron 35.0%
! TGTCACATTTGAGTTATGCA+CGG - chr1_4:31950930-31950949 Msa0160080:CDS 35.0%
TGAGTTATGCACGGTTATTA+AGG - chr1_4:31950939-31950958 Msa0160080:CDS 35.0%
!!! ATCAATCCTAGTTTTGGTCT+AGG - chr1_4:31951069-31951088 Msa0160080:intron 35.0%
!! TCAACCAAAGTTGATGTATC+TGG + chr1_4:31951288-31951307 None:intergenic 35.0%
CCCAAGTTTCTCCTATAAAA+AGG - chr1_4:31951308-31951327 Msa0160080:intron 35.0%
GTTTCTCCTATAAAAAGGAC+CGG - chr1_4:31951313-31951332 Msa0160080:intron 35.0%
TAAAAACACTATACTCCCTC+CGG + chr1_4:31951335-31951354 None:intergenic 35.0%
! TTGGTTCTCACTGAGTAATA+AGG + chr1_4:31951388-31951407 None:intergenic 35.0%
!!! TGACAGTTTTTTCTTCTCAC+AGG - chr1_4:31951518-31951537 Msa0160080:intron 35.0%
! CGGTAGTTTTTATGACATTC+AGG + chr1_4:31952168-31952187 None:intergenic 35.0%
CAGTGGCAATAATTACAGTA+TGG + chr1_4:31952338-31952357 None:intergenic 35.0%
CATACTGTAATTATTGCCAC+TGG - chr1_4:31952336-31952355 Msa0160080:intron 35.0%
! TACCCAGAGAAGATGAATTT+TGG - chr1_4:31952382-31952401 Msa0160080:intron 35.0%
CTCCAAAATTCATCTTCTCT+GGG + chr1_4:31952387-31952406 None:intergenic 35.0%
CAAATATAATGCTTCCTCTG+TGG + chr1_4:31952499-31952518 None:intergenic 35.0%
ATATTTCCCAACTCTCTACT+TGG - chr1_4:31952606-31952625 Msa0160080:intron 35.0%
GAGAGTGGATAAACTAAAAG+GGG + chr1_4:31952796-31952815 None:intergenic 35.0%
GAGAGAGTGGATAAACTAAA+AGG + chr1_4:31952798-31952817 None:intergenic 35.0%
AACTGAAAGGAAAAACAGAG+AGG + chr1_4:31953001-31953020 None:intergenic 35.0%
AACATAAGGTGGAAACTGAA+AGG + chr1_4:31953014-31953033 None:intergenic 35.0%
GCTAAGGCTTCTTTGTAATT+TGG - chr1_4:31953398-31953417 Msa0160080:intron 35.0%
!!! TTTTGCAAGCACGCTTTTTT+GGG + chr1_4:31953527-31953546 None:intergenic 35.0%
!! ATTTTGCAAGCACGCTTTTT+TGG + chr1_4:31953528-31953547 None:intergenic 35.0%
GAAAACTATCTGCTTAGTCT+AGG - chr1_4:31953685-31953704 Msa0160080:intron 35.0%
AGGTTAGCAAAAGGGATTAA+AGG - chr1_4:31953752-31953771 Msa0160080:intron 35.0%
ATTTCCTGTCAGTTTGAGTA+TGG - chr1_4:31953804-31953823 Msa0160080:intron 35.0%
CTCCTGAATGTTTGTTTAAC+AGG - chr1_4:31953897-31953916 Msa0160080:intron 35.0%
AATACAAAAGGACAGATGTC+TGG - chr1_4:31954002-31954021 Msa0160080:intron 35.0%
!! AGTAAGAAAGCTTGATAGTG+GGG - chr1_4:31954031-31954050 Msa0160080:intron 35.0%
! ACAGTTGAGTATTTGGTGAA+TGG + chr1_4:31954100-31954119 None:intergenic 35.0%
CCTTTCAACAGTTGAGTATT+TGG + chr1_4:31954107-31954126 None:intergenic 35.0%
CCAAATACTCAACTGTTGAA+AGG - chr1_4:31954104-31954123 Msa0160080:intron 35.0%
TGGCTACTTACTAGTTAAAG+AGG - chr1_4:31954148-31954167 Msa0160080:intron 35.0%
GGCTACTTACTAGTTAAAGA+GGG - chr1_4:31954149-31954168 Msa0160080:intron 35.0%
ACTGCAAAAACTTCAGTTGA+AGG - chr1_4:31954173-31954192 Msa0160080:intron 35.0%
! ATCAACACAAAGCATCCAAT+AGG + chr1_4:31954228-31954247 None:intergenic 35.0%
TTCCAGATCTCTCTAATGTT+TGG - chr1_4:31954487-31954506 Msa0160080:CDS 35.0%
TCCAGATCTCTCTAATGTTT+GGG - chr1_4:31954488-31954507 Msa0160080:CDS 35.0%
TCTCTCTAATGTTTGGGAAA+TGG - chr1_4:31954494-31954513 Msa0160080:CDS 35.0%
CTCTCTAATGTTTGGGAAAT+GGG - chr1_4:31954495-31954514 Msa0160080:CDS 35.0%
TGTTCAATCTTGCCTTGATA+TGG - chr1_4:31954560-31954579 Msa0160080:intron 35.0%
CGTTCTCTAATTCCATATCA+AGG + chr1_4:31954575-31954594 None:intergenic 35.0%
ATTCTCGTGATTTAGTGAAG+CGG + chr1_4:31954836-31954855 None:intergenic 35.0%
ACGAGAATTAAGAATGTTGG+TGG - chr1_4:31954848-31954867 Msa0160080:intron 35.0%
TCTCTCTTGAAGGATAAACT+TGG + chr1_4:31954909-31954928 None:intergenic 35.0%
! TCACTTGTTAGTATTTCCCT+TGG - chr1_4:31955315-31955334 Msa0160080:intron 35.0%
CGATTTGATATAGAAGACCA+AGG + chr1_4:31955335-31955354 None:intergenic 35.0%
TCTTCTTATAGAGTTCCATC+AGG - chr1_4:31955589-31955608 Msa0160080:intron 35.0%
! GTTCCTCAAAATTTTGTTGG+TGG - chr1_4:31955821-31955840 Msa0160080:intron 35.0%
! TACCCACCAACAAAATTTTG+AGG + chr1_4:31955827-31955846 None:intergenic 35.0%
AATCATTGAAGCTCCCATTT+GGG + chr1_4:31955951-31955970 None:intergenic 35.0%
AAATCATTGAAGCTCCCATT+TGG + chr1_4:31955952-31955971 None:intergenic 35.0%
TAACTAAGTGTAGCAGGTAA+TGG + chr1_4:31956044-31956063 None:intergenic 35.0%
!!! AGCTTTTAAGTTATTGGTGG+AGG - chr1_4:31956218-31956237 Msa0160080:intron 35.0%
AATTGTACCATGATAGTCCA+AGG - chr1_4:31956561-31956580 Msa0160080:CDS 35.0%
ATATAAGCCTTGGACTATCA+TGG + chr1_4:31956571-31956590 None:intergenic 35.0%
TAACATACCTTACTGAGGAT+TGG + chr1_4:31956641-31956660 None:intergenic 35.0%
CCACGTTAATACATTCACAA+CGG + chr1_4:31957322-31957341 None:intergenic 35.0%
! ACTTTCACTTCCTTGTTTGA+TGG - chr1_4:31957411-31957430 Msa0160080:intron 35.0%
AGAATACCGAGAATTCATTG+AGG - chr1_4:31957903-31957922 Msa0160080:intron 35.0%
CAAAATTGAATCACGGAACT+CGG + chr1_4:31957969-31957988 None:intergenic 35.0%
GAACGTGCTGAATTCAAATA+GGG + chr1_4:31958132-31958151 None:intergenic 35.0%
TGAACGTGCTGAATTCAAAT+AGG + chr1_4:31958133-31958152 None:intergenic 35.0%
TATGATCAGTCATTTCAGCT+TGG + chr1_4:31958212-31958231 None:intergenic 35.0%
! AATAGATGTTTCTGCAACAG+TGG - chr1_4:31958303-31958322 Msa0160080:CDS 35.0%
TATCTAGTTAACGTGAGATC+AGG + chr1_4:31958335-31958354 None:intergenic 35.0%
AGATATTTCCACTGTAACTG+CGG - chr1_4:31958350-31958369 Msa0160080:five_prime_UTR 35.0%
! GTCTACTGGTGATGATTGTA+TGG - chr1_4:31950118-31950137 Msa0160080:three_prime_UTR 40.0%
AGAATGGTTACTGCGAAGAT+AGG - chr1_4:31950151-31950170 Msa0160080:three_prime_UTR 40.0%
AAGTAATGATGAACCTGGTG+AGG + chr1_4:31950374-31950393 None:intergenic 40.0%
AGAGCAAGTAATGATGAACC+TGG + chr1_4:31950379-31950398 None:intergenic 40.0%
!! GTTAAGTGTCGGAGAAAACA+AGG - chr1_4:31950512-31950531 Msa0160080:three_prime_UTR 40.0%
GAATGGAGGGTAGTTGTTAA+AGG - chr1_4:31950750-31950769 Msa0160080:intron 40.0%
AAAGGATTTGGAGATGGCTT+AGG - chr1_4:31950768-31950787 Msa0160080:intron 40.0%
TTAAATGTCAGGCTGAGTGT+TGG + chr1_4:31950865-31950884 None:intergenic 40.0%
GAGGTAGTTGAGTATAACAG+TGG - chr1_4:31951037-31951056 Msa0160080:intron 40.0%
CAGTCCAGATACATCAACTT+TGG - chr1_4:31951281-31951300 Msa0160080:intron 40.0%
AGGTAACGCAGTTGAAAATG+TGG - chr1_4:31951538-31951557 Msa0160080:intron 40.0%
GAACACTACGGGTTTCAAAT+TGG + chr1_4:31951618-31951637 None:intergenic 40.0%
ACTGAAGTAGAGAACTTTCC+AGG - chr1_4:31951686-31951705 Msa0160080:intron 40.0%
AGAGAACTTTCCAGGATTTC+CGG - chr1_4:31951694-31951713 Msa0160080:intron 40.0%
GATTACTGGACCTGATCTAA+TGG - chr1_4:31951721-31951740 Msa0160080:intron 40.0%
TGATACCTGTCCATTAGATC+AGG + chr1_4:31951734-31951753 None:intergenic 40.0%
! TCACTGCTTTGGACAGTAAA+AGG + chr1_4:31951922-31951941 None:intergenic 40.0%
AACTCCCATATACCACGAAT+TGG + chr1_4:31952268-31952287 None:intergenic 40.0%
GCTCCAAAATTCATCTTCTC+TGG + chr1_4:31952388-31952407 None:intergenic 40.0%
!!! GAAGATGAATTTTGGAGCAG+AGG - chr1_4:31952390-31952409 Msa0160080:intron 40.0%
AGTGCTTGTGCAATTTGTGA+TGG - chr1_4:31952417-31952436 Msa0160080:intron 40.0%
AGAATTTGACCCTTGAAGAG+AGG + chr1_4:31952450-31952469 None:intergenic 40.0%
! AAATTCTTGCTGTCGTTGGA+GGG - chr1_4:31952463-31952482 Msa0160080:intron 40.0%
!! CTTCTAAAGCCATGCAAGAT+AGG - chr1_4:31952571-31952590 Msa0160080:intron 40.0%
! TACTTGGTAGCTGACTAGTT+AGG - chr1_4:31952622-31952641 Msa0160080:intron 40.0%
AAGCTCAAGTGAACATAAGG+TGG + chr1_4:31953025-31953044 None:intergenic 40.0%
TTAGCCTATGTTTGTGTTGG+CGG + chr1_4:31953383-31953402 None:intergenic 40.0%
ATTGGAAAGAGAATGACCAC+AGG + chr1_4:31953501-31953520 None:intergenic 40.0%
!!! TTTGCAAGCACGCTTTTTTG+GGG + chr1_4:31953526-31953545 None:intergenic 40.0%
AACTCCATACTCAAACTGAC+AGG + chr1_4:31953811-31953830 None:intergenic 40.0%
TTGAAGTGCACAGTGACATT+TGG + chr1_4:31953957-31953976 None:intergenic 40.0%
TAACTAGTAAGTAGCCAGAC+TGG + chr1_4:31954145-31954164 None:intergenic 40.0%
TCCCAAACATTAGAGAGATC+TGG + chr1_4:31954492-31954511 None:intergenic 40.0%
TTCTCGTGATTTAGTGAAGC+GGG + chr1_4:31954835-31954854 None:intergenic 40.0%
! TAATAGAGGTATGCGTATGC+TGG - chr1_4:31954985-31955004 Msa0160080:intron 40.0%
AAATACTAACAAGTGACCCC+GGG + chr1_4:31955311-31955330 None:intergenic 40.0%
GAAATACTAACAAGTGACCC+CGG + chr1_4:31955312-31955331 None:intergenic 40.0%
!! AGTGGCTTTGAGCAATGTTA+CGG - chr1_4:31955863-31955882 Msa0160080:intron 40.0%
ATCACACATTCCTTTACGTG+AGG - chr1_4:31956002-31956021 Msa0160080:CDS 40.0%
TGGAAGCCTGAGATTCATAT+TGG + chr1_4:31956325-31956344 None:intergenic 40.0%
GGCTGTTACAGGAAACAAAT+TGG + chr1_4:31956345-31956364 None:intergenic 40.0%
!!! CTTCATGTTTTGGCTGTTAC+AGG + chr1_4:31956356-31956375 None:intergenic 40.0%
GTAACAGCCAAAACATGAAG+AGG - chr1_4:31956356-31956375 Msa0160080:intron 40.0%
CTGTAAACAGGAAAACGTAC+AGG + chr1_4:31956528-31956547 None:intergenic 40.0%
ATTGAAGCCAATCCTCAGTA+AGG - chr1_4:31956631-31956650 Msa0160080:CDS 40.0%
!! TCTTTTGTTAGATGGTGGTG+TGG - chr1_4:31956790-31956809 Msa0160080:CDS 40.0%
GAACTATGCATCGAGACATT+TGG - chr1_4:31956841-31956860 Msa0160080:CDS 40.0%
TGATTATTCCTTAGAGGCAG+AGG + chr1_4:31957250-31957269 None:intergenic 40.0%
CCGTTGTGAATGTATTAACG+TGG - chr1_4:31957319-31957338 Msa0160080:intron 40.0%
ATCCATGAAGCAAGTCACAA+TGG + chr1_4:31957821-31957840 None:intergenic 40.0%
!!! TTGACTGCTGTTGATTTTGC+AGG - chr1_4:31957854-31957873 Msa0160080:intron 40.0%
! TGATTTTGCAGGACTGTTTC+AGG - chr1_4:31957865-31957884 Msa0160080:intron 40.0%
ACTGCGAAGATAGGACTCTT+CGG - chr1_4:31950160-31950179 Msa0160080:three_prime_UTR 45.0%
GAAACGATGATGAGAAGGTG+AGG + chr1_4:31950242-31950261 None:intergenic 45.0%
AAGAACGAGAACGAAGAGAG+CGG + chr1_4:31950282-31950301 None:intergenic 45.0%
! TCTAAGACGGAGAGAGTAGT+TGG + chr1_4:31950905-31950924 None:intergenic 45.0%
TCTCTTATAAACAGGACCGG+AGG + chr1_4:31951221-31951240 None:intergenic 45.0%
TCTCCTATAAAAAGGACCGG+AGG - chr1_4:31951316-31951335 Msa0160080:intron 45.0%
CTCCTATAAAAAGGACCGGA+GGG - chr1_4:31951317-31951336 Msa0160080:intron 45.0%
ATTATAGGTTCAGGTCCTGC+AGG - chr1_4:31951563-31951582 Msa0160080:intron 45.0%
! TTTGAAACCCGTAGTGTTCG+AGG - chr1_4:31951619-31951638 Msa0160080:intron 45.0%
TTGAAACCCGTAGTGTTCGA+GGG - chr1_4:31951620-31951639 Msa0160080:intron 45.0%
! TTGGTAACCCTCGAACACTA+CGG + chr1_4:31951630-31951649 None:intergenic 45.0%
AGTGTTCGAGGGTTACCAAA+TGG - chr1_4:31951631-31951650 Msa0160080:intron 45.0%
GTGTTCGAGGGTTACCAAAT+GGG - chr1_4:31951632-31951651 Msa0160080:intron 45.0%
AACTTTCCAGGATTTCCGGA+CGG - chr1_4:31951698-31951717 Msa0160080:intron 45.0%
! TCTACTTGTCTAGGATGCGA+CGG - chr1_4:31951830-31951849 Msa0160080:intron 45.0%
TGTCCAAAGCAGTGAACGTA+AGG - chr1_4:31951927-31951946 Msa0160080:CDS 45.0%
TCACCTTACGTTCACTGCTT+TGG + chr1_4:31951933-31951952 None:intergenic 45.0%
GAGCAACTGCAAAACGACTT+AGG - chr1_4:31952358-31952377 Msa0160080:intron 45.0%
! GGTCAAATTCTTGCTGTCGT+TGG - chr1_4:31952459-31952478 Msa0160080:intron 45.0%
! CAAATTCTTGCTGTCGTTGG+AGG - chr1_4:31952462-31952481 Msa0160080:intron 45.0%
! AATTCTTGCTGTCGTTGGAG+GGG - chr1_4:31952464-31952483 Msa0160080:intron 45.0%
TTGTACGTCGAGACCAACTA+AGG - chr1_4:31952547-31952566 Msa0160080:intron 45.0%
TGTACGTCGAGACCAACTAA+GGG - chr1_4:31952548-31952567 Msa0160080:intron 45.0%
!! TGGCTTTAGAAGCCCTTAGT+TGG + chr1_4:31952563-31952582 None:intergenic 45.0%
CAGCTACCAAGTAGAGAGTT+GGG + chr1_4:31952615-31952634 None:intergenic 45.0%
TCAGCTACCAAGTAGAGAGT+TGG + chr1_4:31952616-31952635 None:intergenic 45.0%
ACATACGCACAAGATTCCTC+TGG - chr1_4:31952874-31952893 Msa0160080:intron 45.0%
GCCAACACAAACATAGGCTA+AGG - chr1_4:31953382-31953401 Msa0160080:intron 45.0%
GCCTTAGCCTATGTTTGTGT+TGG + chr1_4:31953386-31953405 None:intergenic 45.0%
!!! GCACGCTTTTTTGGGGAAAT+TGG + chr1_4:31953519-31953538 None:intergenic 45.0%
GCACTTCAATACAGAGACTG+TGG - chr1_4:31953968-31953987 Msa0160080:intron 45.0%
!! AAGAAAGCTTGATAGTGGGG+AGG - chr1_4:31954034-31954053 Msa0160080:intron 45.0%
TATGCCGTAGAATAGCCCTT+TGG + chr1_4:31954075-31954094 None:intergenic 45.0%
AAAGGGCTATTCTACGGCAT+AGG - chr1_4:31954074-31954093 Msa0160080:intron 45.0%
! CAGACTGGTCAAGTTCAACT+TGG + chr1_4:31954130-31954149 None:intergenic 45.0%
! CAAGTTGAACTTGACCAGTC+TGG - chr1_4:31954128-31954147 Msa0160080:intron 45.0%
! GTTGAAGGTGTATTTGCTGC+TGG - chr1_4:31954188-31954207 Msa0160080:intron 45.0%
GAGATGTGCAGGTAACCTAT+TGG - chr1_4:31954210-31954229 Msa0160080:intron 45.0%
!! AGCCTTTTAGGGAGAGTCAT+TGG - chr1_4:31954426-31954445 Msa0160080:CDS 45.0%
!! CTTTTAGGGAGAGTCATTGG+CGG - chr1_4:31954429-31954448 Msa0160080:CDS 45.0%
TGAAGCGGGTCCCATATTTA+GGG + chr1_4:31954821-31954840 None:intergenic 45.0%
! GAGGGTCTTGTATTTAGGGA+CGG - chr1_4:31955073-31955092 Msa0160080:intron 45.0%
!! AATGTTCTTAAGGAGTGCCC+CGG - chr1_4:31955290-31955309 Msa0160080:intron 45.0%
AATACTAACAAGTGACCCCG+GGG + chr1_4:31955310-31955329 None:intergenic 45.0%
TTGCTTAGGCCCCTATGTTA+AGG - chr1_4:31955458-31955477 Msa0160080:intron 45.0%
TGTTCTCATAGGACCATGAG+TGG - chr1_4:31955492-31955511 Msa0160080:intron 45.0%
!! GTGGCTTTGAGCAATGTTAC+GGG - chr1_4:31955864-31955883 Msa0160080:intron 45.0%
TGACACAATGAGGTCCCAAA+TGG - chr1_4:31955934-31955953 Msa0160080:CDS 45.0%
GACACAATGAGGTCCCAAAT+GGG - chr1_4:31955935-31955954 Msa0160080:CDS 45.0%
AACAGACAGGGATGTTCAAG+CGG - chr1_4:31956392-31956411 Msa0160080:intron 45.0%
ACTTACAAAGCATAAGGGGC+AGG - chr1_4:31956428-31956447 Msa0160080:intron 45.0%
TCGCAGAGCATACTGTAAAC+AGG + chr1_4:31956540-31956559 None:intergenic 45.0%
TTATACACGTCACCGACATG+TGG - chr1_4:31956596-31956615 Msa0160080:CDS 45.0%
! ATTGGCTTCAATGTCCGACA+CGG + chr1_4:31956623-31956642 None:intergenic 45.0%
TCCGACATATGAGCATCACA+GGG + chr1_4:31956896-31956915 None:intergenic 45.0%
TTCCGACATATGAGCATCAC+AGG + chr1_4:31956897-31956916 None:intergenic 45.0%
! CAAGCCTTATCCCACTAAGT+GGG - chr1_4:31957109-31957128 Msa0160080:intron 45.0%
! AAGCCTTATCCCACTAAGTG+GGG - chr1_4:31957110-31957129 Msa0160080:intron 45.0%
AATTGACAGCGCTATTCAGC+AGG + chr1_4:31958005-31958024 None:intergenic 45.0%
CATTGTCATCAACGAGAAGC+TGG + chr1_4:31958160-31958179 None:intergenic 45.0%
!! GCTTCTCGTTGATGACAATG+TGG - chr1_4:31958160-31958179 Msa0160080:CDS 45.0%
GTTAACGTGAGATCAGGAAG+TGG + chr1_4:31958329-31958348 None:intergenic 45.0%
!!! TTTTTTTTTTACATTTAAAT+TGG - chr1_4:31958246-31958265 Msa0160080:CDS 5.0%
GAAGATAGGACTCTTCGGAG+TGG - chr1_4:31950165-31950184 Msa0160080:three_prime_UTR 50.0%
ATGAGAAGGTGAGGAGAGAG+AGG + chr1_4:31950233-31950252 None:intergenic 50.0%
!! AAGAAGTGTCGGAAGAGGCT+CGG + chr1_4:31950339-31950358 None:intergenic 50.0%
! TACGGAGGAGGAAGAAGTGT+CGG + chr1_4:31950350-31950369 None:intergenic 50.0%
TGATGAACCTGGTGAGGCTA+CGG + chr1_4:31950368-31950387 None:intergenic 50.0%
! CTCCCTCCGGTCCTTTTTAT+AGG + chr1_4:31951322-31951341 None:intergenic 50.0%
ATTGCTGCTGTGTATCCTGC+AGG + chr1_4:31951581-31951600 None:intergenic 50.0%
TGGTAACCCTCGAACACTAC+GGG + chr1_4:31951629-31951648 None:intergenic 50.0%
TTCGAGGGTTACCAAATGGG+TGG - chr1_4:31951635-31951654 Msa0160080:intron 50.0%
TACCAAATGGGTGGTGTTCC+TGG - chr1_4:31951644-31951663 Msa0160080:intron 50.0%
ACCAAATGGGTGGTGTTCCT+GGG - chr1_4:31951645-31951664 Msa0160080:intron 50.0%
GTAGTCATCAATTGTCCCCC+AGG + chr1_4:31951665-31951684 None:intergenic 50.0%
ACTTTCCAGGATTTCCGGAC+GGG - chr1_4:31951699-31951718 Msa0160080:intron 50.0%
! CTGGACCTGATCTAATGGAC+AGG - chr1_4:31951726-31951745 Msa0160080:intron 50.0%
! TCGTTTTGCAGTTGCTCCAG+TGG + chr1_4:31952355-31952374 None:intergenic 50.0%
! TGGAGCATCACCTCTCTTCA+AGG - chr1_4:31952437-31952456 Msa0160080:intron 50.0%
! GGAGCATCACCTCTCTTCAA+GGG - chr1_4:31952438-31952457 Msa0160080:intron 50.0%
! ATTCTTGCTGTCGTTGGAGG+GGG - chr1_4:31952465-31952484 Msa0160080:intron 50.0%
TCGGACACACCTATCTTGCA+TGG + chr1_4:31952583-31952602 None:intergenic 50.0%
AGAGAGAGAGAGAGAGAGAG+TGG + chr1_4:31952811-31952830 None:intergenic 50.0%
CTTTCTCGTGAACGTGCGTT+AGG + chr1_4:31953357-31953376 None:intergenic 50.0%
TCTTCTCACATGGCAACCTG+TGG - chr1_4:31953482-31953501 Msa0160080:intron 50.0%
AGTCAGTGCTTGAGGCCAAA+GGG - chr1_4:31954057-31954076 Msa0160080:intron 50.0%
GAGGCCAAAGGGCTATTCTA+CGG - chr1_4:31954068-31954087 Msa0160080:intron 50.0%
! ATTTGCTGCTGGAGATGTGC+AGG - chr1_4:31954199-31954218 Msa0160080:intron 50.0%
CGCCAATGACTCTCCCTAAA+AGG + chr1_4:31954431-31954450 None:intergenic 50.0%
GTGAAGCGGGTCCCATATTT+AGG + chr1_4:31954822-31954841 None:intergenic 50.0%
! GGTCTTGTATTTAGGGACGG+AGG - chr1_4:31955076-31955095 Msa0160080:intron 50.0%
!! ATGTTCTTAAGGAGTGCCCC+GGG - chr1_4:31955291-31955310 Msa0160080:intron 50.0%
TCTCATAGGACCATGAGTGG+AGG - chr1_4:31955495-31955514 Msa0160080:intron 50.0%
TCCAGATCCAGCAGCAGTTA+CGG + chr1_4:31955525-31955544 None:intergenic 50.0%
GAGAGATATCTCGTCAGCAG+TGG - chr1_4:31955566-31955585 Msa0160080:intron 50.0%
ACAGACAGGGATGTTCAAGC+GGG - chr1_4:31956393-31956412 Msa0160080:intron 50.0%
ATATGAGCATCACAGGGCAC+TGG + chr1_4:31956890-31956909 None:intergenic 50.0%
GCCCTGTGATGCTCATATGT+CGG - chr1_4:31956892-31956911 Msa0160080:CDS 50.0%
CCACTTAGTGGGATAAGGCT+TGG + chr1_4:31957111-31957130 None:intergenic 50.0%
! CCAAGCCTTATCCCACTAAG+TGG - chr1_4:31957108-31957127 Msa0160080:intron 50.0%
CTTATCCCACTAAGTGGGGT+CGG - chr1_4:31957114-31957133 Msa0160080:intron 50.0%
TAGGTCTTCCTCTGCCTCTA+AGG - chr1_4:31957239-31957258 Msa0160080:intron 50.0%
!! CCAGCTGCTTCTGCTATTTC+TGG + chr1_4:31957552-31957571 None:intergenic 50.0%
CCAGAAATAGCAGAAGCAGC+TGG - chr1_4:31957549-31957568 Msa0160080:intron 50.0%
AGCAGAAGCAGCTGGAATCA+TGG - chr1_4:31957557-31957576 Msa0160080:intron 50.0%
GCAGAAGCAGCTGGAATCAT+GGG - chr1_4:31957558-31957577 Msa0160080:intron 50.0%
!! GGCCATTGTGACTTGCTTCA+TGG - chr1_4:31957816-31957835 Msa0160080:intron 50.0%
ATTTCCACTGTAACTGCGGC+TGG - chr1_4:31958354-31958373 Msa0160080:five_prime_UTR 50.0%
GTGACACGGTGGTTGTGAGT+GGG + chr1_4:31950202-31950221 None:intergenic 55.0%
GAGAGGAAGCAGTGGTGACA+CGG + chr1_4:31950216-31950235 None:intergenic 55.0%
TGAGGAGAGAGAGGAAGCAG+TGG + chr1_4:31950224-31950243 None:intergenic 55.0%
!! GGAGGAAGAAGTGTCGGAAG+AGG + chr1_4:31950344-31950363 None:intergenic 55.0%
CCAAATGGGTGGTGTTCCTG+GGG - chr1_4:31951646-31951665 Msa0160080:intron 55.0%
CAAATGGGTGGTGTTCCTGG+GGG - chr1_4:31951647-31951666 Msa0160080:intron 55.0%
GTAATCCCGTCCGGAAATCC+TGG + chr1_4:31951707-31951726 None:intergenic 55.0%
GGATTTCCGGACGGGATTAC+TGG - chr1_4:31951707-31951726 Msa0160080:intron 55.0%
TCAGGTCCAGTAATCCCGTC+CGG + chr1_4:31951716-31951735 None:intergenic 55.0%
GCACAGTGGCAGTGGTGAAA+CGG + chr1_4:31953281-31953300 None:intergenic 55.0%
TCTCAAACGCACAGTGGCAG+TGG + chr1_4:31953289-31953308 None:intergenic 55.0%
CAAGGCTCTCAAACGCACAG+TGG + chr1_4:31953295-31953314 None:intergenic 55.0%
GCCACCGCCAACACAAACAT+AGG - chr1_4:31953376-31953395 Msa0160080:intron 55.0%
! GCCTATGTTTGTGTTGGCGG+TGG + chr1_4:31953380-31953399 None:intergenic 55.0%
GAGTCAGTGCTTGAGGCCAA+AGG - chr1_4:31954056-31954075 Msa0160080:intron 55.0%
!! TGTTCTTAAGGAGTGCCCCG+GGG - chr1_4:31955292-31955311 Msa0160080:intron 55.0%
TTACGGCTTGCCTCCACTCA+TGG + chr1_4:31955508-31955527 None:intergenic 55.0%
CGACCCCACTTAGTGGGATA+AGG + chr1_4:31957116-31957135 None:intergenic 55.0%
TGTAGCCGACCCCACTTAGT+GGG + chr1_4:31957122-31957141 None:intergenic 55.0%
ATGTAGCCGACCCCACTTAG+TGG + chr1_4:31957123-31957142 None:intergenic 55.0%
ACTAAGTGGGGTCGGCTACA+TGG - chr1_4:31957122-31957141 Msa0160080:intron 55.0%
AACTGCGGCTGGACAGAATC+TGG - chr1_4:31958365-31958384 Msa0160080:five_prime_UTR 55.0%
ACACGGTGGTTGTGAGTGGG+AGG + chr1_4:31950199-31950218 None:intergenic 60.0%
GGTGACACGGTGGTTGTGAG+TGG + chr1_4:31950203-31950222 None:intergenic 60.0%
AGGAAGCAGTGGTGACACGG+TGG + chr1_4:31950213-31950232 None:intergenic 60.0%
TGAACCTGGTGAGGCTACGG+AGG + chr1_4:31950365-31950384 None:intergenic 60.0%
CCCCAGGAACACCACCCATT+TGG + chr1_4:31951649-31951668 None:intergenic 60.0%
TGCGACGGCAAGCTGAACGT+TGG - chr1_4:31951845-31951864 Msa0160080:intron 60.0%
GCGACGGCAAGCTGAACGTT+GGG - chr1_4:31951846-31951865 Msa0160080:intron 60.0%
CGACGGCAAGCTGAACGTTG+GGG - chr1_4:31951847-31951866 Msa0160080:intron 60.0%
AGGGGGTGATACAGCCACAG+AGG - chr1_4:31952482-31952501 Msa0160080:intron 60.0%
TGGGGAGGAGTCAGTGCTTG+AGG - chr1_4:31954049-31954068 Msa0160080:intron 60.0%
AGGCAAGCCGTAACTGCTGC+TGG - chr1_4:31955515-31955534 Msa0160080:intron 60.0%
GCCGTAACTGCTGCTGGATC+TGG - chr1_4:31955521-31955540 Msa0160080:intron 60.0%
CACCGACATGTGGTCCGTGT+CGG - chr1_4:31956606-31956625 Msa0160080:CDS 60.0%
GTCCGACACGGACCACATGT+CGG + chr1_4:31956611-31956630 None:intergenic 60.0%
CTGTCCAGCCGCAGTTACAG+TGG + chr1_4:31958361-31958380 None:intergenic 60.0%
TCCTCCTCCGTAGCCTCACC+AGG - chr1_4:31950358-31950377 Msa0160080:three_prime_UTR 65.0%
ACCTGGTGAGGCTACGGAGG+AGG + chr1_4:31950362-31950381 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr1_4 gene 31950113 31958388 31950113 ID=Msa0160080;Name=Msa0160080
chr1_4 mRNA 31950113 31958388 31950113 ID=Msa0160080-mRNA-1;Parent=Msa0160080;Name=Msa0160080-mRNA-1;_AED=0.05;_eAED=0.05;_QI=41|1|1|1|1|1|10|452|525
chr1_4 exon 31950113 31950625 31950113 ID=Msa0160080-mRNA-1:exon:10101;Parent=Msa0160080-mRNA-1
chr1_4 exon 31950879 31951009 31950879 ID=Msa0160080-mRNA-1:exon:10100;Parent=Msa0160080-mRNA-1
chr1_4 exon 31951849 31951953 31951849 ID=Msa0160080-mRNA-1:exon:10099;Parent=Msa0160080-mRNA-1
chr1_4 exon 31952052 31952138 31952052 ID=Msa0160080-mRNA-1:exon:10098;Parent=Msa0160080-mRNA-1
chr1_4 exon 31952891 31952998 31952891 ID=Msa0160080-mRNA-1:exon:10097;Parent=Msa0160080-mRNA-1
chr1_4 exon 31954281 31954560 31954281 ID=Msa0160080-mRNA-1:exon:10096;Parent=Msa0160080-mRNA-1
chr1_4 exon 31955909 31956174 31955909 ID=Msa0160080-mRNA-1:exon:10095;Parent=Msa0160080-mRNA-1
chr1_4 exon 31956553 31956658 31956553 ID=Msa0160080-mRNA-1:exon:10094;Parent=Msa0160080-mRNA-1
chr1_4 exon 31956754 31956961 31956754 ID=Msa0160080-mRNA-1:exon:10093;Parent=Msa0160080-mRNA-1
chr1_4 exon 31958122 31958388 31958122 ID=Msa0160080-mRNA-1:exon:10092;Parent=Msa0160080-mRNA-1
chr1_4 five_prime_UTR 31958348 31958388 31958348 ID=Msa0160080-mRNA-1:five_prime_utr;Parent=Msa0160080-mRNA-1
chr1_4 CDS 31958122 31958347 31958122 ID=Msa0160080-mRNA-1:cds;Parent=Msa0160080-mRNA-1
chr1_4 CDS 31956754 31956961 31956754 ID=Msa0160080-mRNA-1:cds;Parent=Msa0160080-mRNA-1
chr1_4 CDS 31956553 31956658 31956553 ID=Msa0160080-mRNA-1:cds;Parent=Msa0160080-mRNA-1
chr1_4 CDS 31955909 31956174 31955909 ID=Msa0160080-mRNA-1:cds;Parent=Msa0160080-mRNA-1
chr1_4 CDS 31954281 31954560 31954281 ID=Msa0160080-mRNA-1:cds;Parent=Msa0160080-mRNA-1
chr1_4 CDS 31952891 31952998 31952891 ID=Msa0160080-mRNA-1:cds;Parent=Msa0160080-mRNA-1
chr1_4 CDS 31952052 31952138 31952052 ID=Msa0160080-mRNA-1:cds;Parent=Msa0160080-mRNA-1
chr1_4 CDS 31951849 31951953 31951849 ID=Msa0160080-mRNA-1:cds;Parent=Msa0160080-mRNA-1
chr1_4 CDS 31950879 31951009 31950879 ID=Msa0160080-mRNA-1:cds;Parent=Msa0160080-mRNA-1
chr1_4 CDS 31950565 31950625 31950565 ID=Msa0160080-mRNA-1:cds;Parent=Msa0160080-mRNA-1
chr1_4 three_prime_UTR 31950113 31950564 31950113 ID=Msa0160080-mRNA-1:three_prime_utr;Parent=Msa0160080-mRNA-1
Gene Sequence

>Msa0160080

ATGGTTACTGCGAAGATAGGACTCTTCGGAGTGGCAACACTTCCTCCCACTCACAACCACCGTGTCACCACTGCTTCCTCTCTCTCCTCACCTTCTCATCATCGTTTCATCTTCATCAACTCACGCCGCTCTCTTCGTTCTCGTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTCTCACACTCCGAGCCTCTTCCGACACTTCTTCCTCCTCCGTAGCCTCACCAGGTAACGCAGTTGAAAATGTGGTAATTATAGGTTCAGGTCCTGCAGGATACACAGCAGCAATATATGCTGCACGAGCCAATTTGAAACCCGTAGTGTTCGAGGGTTACCAAATGGGTGGTGTTCCTGGGGGACAATTGATGACTACAACTGAAGTAGAGAACTTTCCAGGATTTCCGGACGGGATTACTGGACCTGATCTAATGGACAGGATGCGACGGCAAGCTGAACGTTGGGGAGCAGAATTGCATCATGAAGATGTTGAAGCTATTGATGTGAAGACTAGTCCTTTTACTGTCCAAAGCAGTGAACGTAAGGTTAAGAGCCATACTGTAATTATTGCCACTGGAGCAACTGCAAAACGACTTAGGCTACCCAGAGAAGATGAATTTTGGAGCAGAGGAATTAGTGCTTGTGCAATTTGTGATGGAGCATCACCTCTCTTCAAGGGTCAAATTCTTGCTGTCGTTGGAGGGGGTGATACAGCCACAGAGGAAGCATTATATTTGACAAAATATGCTCGTCATGTTCACTTACTTGTACGTCGAGACCAACTAAGGGCTTCTAAAGCCATGCAAGATAGAGTGTATGACAATCCAAATGTCACTGTGCACTTCAATACAGAGACTGTGGATATTGTGAGCAATACAAAAGGACAGATGTCTGGCATTTTAGTAAGAAAGCTTGATAGTGGGGAGGAGTCAGTGCTTGAGGCCAAAGGGCTATTCTACGGCATAGGCCATTCACCAAATACTCAACTGTTGAAAGGCCAAGTTGAACTTGACCAGTCTGGCTACTTACTAGTTAAAGAGGGTACTGCAAAAACTTCAGTTGAAGGTGTATTTGCTGCTGGAGATGTGCAGGACCATGAGTGGAGGCAAGCCGTAACTGCTGCTGGATCTGGATGTATTGCAGCTTTATCAGTTGAGAGATATCTCGTCAGCAGTGGTCTTCTTATAGAGTTCCATCAGCCAAAACATGAAGAGGTTAAGAAGGAATTAACAGACAGGGATGTTCAAGCGGGCTTTGACATTACACTTACAAAGCATAAGGGGCAGTATGCTCTGCGAAAATTGTACCATGATAGTCCAAGGCTTATATGTGTATTATACACGTCACCGACATGTGGTCCGTGTCGGACATTGAAGCCAATCCTCAGTAAGGTAATTGATGAATATGATCAGAGTGTACATTTTGTTGAAATTGATATAGAGGAAGATCCAGAAATAGCAGAAGCAGCTGGAATCATGGGTACTCCGTGTGTGCAGTTTTTTAAAAACAAGGAGAATCTTAAGACTGTTTCAGGAGTTAAAATGAAGAGAGAATACCGAGAATTCATTGAGGCAAATATATAG

Protein sequence

>Msa0160080

MVTAKIGLFGVATLPPTHNHRVTTASSLSSPSHHRFIFINSRRSLRSRSSSSSSSSSSLTLRASSDTSSSSVASPGNAVENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQMGGVPGGQLMTTTEVENFPGFPDGITGPDLMDRMRRQAERWGAELHHEDVEAIDVKTSPFTVQSSERKVKSHTVIIATGATAKRLRLPREDEFWSRGISACAICDGASPLFKGQILAVVGGGDTATEEALYLTKYARHVHLLVRRDQLRASKAMQDRVYDNPNVTVHFNTETVDIVSNTKGQMSGILVRKLDSGEESVLEAKGLFYGIGHSPNTQLLKGQVELDQSGYLLVKEGTAKTSVEGVFAAGDVQDHEWRQAVTAAGSGCIAALSVERYLVSSGLLIEFHQPKHEEVKKELTDRDVQAGFDITLTKHKGQYALRKLYHDSPRLICVLYTSPTCGPCRTLKPILSKVIDEYDQSVHFVEIDIEEDPEIAEAAGIMGTPCVQFFKNKENLKTVSGVKMKREYREFIEANI*