AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0866510


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0866510 MtrunA17_Chr5g0434671 89.461 427 13 3 1 395 1 427 0.0 754
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0866510 AT1G66330.1 63.125 320 81 4 104 386 81 400 7.83e-119 352
Msa0866510 AT1G66330.2 63.125 320 81 4 104 386 81 400 7.83e-119 352

Find 107 sgRNAs with CRISPR-Local

Find 386 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAGAAATTCTGTCCCTAAAA+AGG 0.241678 5_4:-68240946 None:intergenic
AGAACCACAAATTCCTTTCT+TGG 0.277347 5_4:+68243231 Msa0866510:CDS
GAGAAACTTTGCATCGTTAC+AGG 0.311814 5_4:-68240440 None:intergenic
CCGAAACCAATCATTGAATA+AGG 0.320915 5_4:-68240011 None:intergenic
CTGGAGTGACGGGGCCTTAG+AGG 0.337435 5_4:+68241373 Msa0866510:CDS
TCAAGGGTTAGACTCGAAAA+TGG 0.338957 5_4:+68239950 Msa0866510:CDS
GAAGCTAAACTAACCTCTTC+AGG 0.339327 5_4:-68243466 None:intergenic
GAACCACAAATTCCTTTCTT+GGG 0.342712 5_4:+68243232 Msa0866510:CDS
ATCTTCCATGGCACGTTGCT+TGG 0.348175 5_4:-68242448 None:intergenic
GTCTTGGAGATTAAACTAAC+TGG 0.351920 5_4:-68240052 None:intergenic
ACAGAATTTCTCAAACTTGA+TGG 0.355828 5_4:+68240957 Msa0866510:CDS
GATCAACCTTATTCAATGAT+TGG 0.357803 5_4:+68240005 Msa0866510:CDS
ATACAGTAGCAATACGATTA+AGG 0.363525 5_4:-68241200 None:intergenic
CCTTATTCAATGATTGGTTT+CGG 0.365622 5_4:+68240011 Msa0866510:CDS
GATCGTGTTCGTTCTGTTCG+TGG 0.367759 5_4:+68240394 Msa0866510:CDS
ATTTAACAGATTTACCTCTA+AGG 0.373384 5_4:-68241387 None:intergenic
AGTATCTATAGGAAGCTTAC+TGG 0.373975 5_4:+68243395 Msa0866510:intron
CTCAGCCGTTCGTTGAAGAT+TGG 0.379239 5_4:-68245149 None:intergenic
GATGCTGCAGCTGCAATGGC+TGG 0.379748 5_4:-68244830 None:intergenic
CTTTGTGTCTGCAACCAATC+TGG 0.381113 5_4:-68245057 None:intergenic
TGATCTTCTGATGGCACTTA+CGG 0.391058 5_4:+68239832 Msa0866510:exon
ATAGGAAGCTTACTGGAGTA+TGG 0.402823 5_4:+68243402 Msa0866510:intron
TTCTTTCTTTGATCTTCTGA+TGG 0.403524 5_4:+68239823 Msa0866510:exon
TTTCAGTTCATATATAGCTT+TGG 0.412176 5_4:-68244852 None:intergenic
ATATCACCTCCAAGGACATA+AGG 0.415173 5_4:-68242473 None:intergenic
AATGCATATGACCAGCATAT+TGG 0.415333 5_4:-68245266 None:intergenic
ATATCCACTGCAGATCTTGA+AGG 0.418058 5_4:+68241310 Msa0866510:intron
AAATAGAAGAAGGGGATAGT+TGG 0.418919 5_4:+68244885 Msa0866510:CDS
TAAAACTAATGTAGGATTAA+CGG 0.420561 5_4:+68245032 Msa0866510:three_prime_UTR
TTTGGATGCTGCAGCTGCAA+TGG 0.432658 5_4:-68244834 None:intergenic
CCGATGAGCACTGGAGTGAC+GGG 0.435635 5_4:+68241363 Msa0866510:CDS
AGATATTTCAAGTGCTATGA+AGG 0.439383 5_4:+68239786 Msa0866510:five_prime_UTR
AGAACGGATTACTGCTCTTC+AGG 0.442816 5_4:+68243266 Msa0866510:CDS
TCTGTCTCATGTAAATCAAC+AGG 0.443072 5_4:+68240079 Msa0866510:CDS
GGATAGTTGGAGGTTTATGA+TGG 0.443543 5_4:+68244898 Msa0866510:CDS
ACTATACTTGTTGTAATGTA+AGG 0.449166 5_4:+68245328 Msa0866510:three_prime_UTR
AACTGTATTCTGTTTATCCT+TGG 0.449791 5_4:-68239926 None:intergenic
GGTAAACGTCAATTATTAGA+TGG 0.451444 5_4:+68245099 Msa0866510:three_prime_UTR
CCTTACCTAGTACCGACATC+AGG 0.452369 5_4:-68243652 None:intergenic
CGAATCATGCTTGAAAAGAA+TGG 0.454171 5_4:+68243207 Msa0866510:CDS
CTGCATAGCTCGGGCAAGAA+AGG 0.454178 5_4:+68241134 Msa0866510:intron
CAAATATGCATCTATATATG+AGG 0.455841 5_4:-68245296 None:intergenic
TAGAAGAAGGGGATAGTTGG+AGG 0.461239 5_4:+68244888 Msa0866510:CDS
GGAAGATGCCCTTATGTCCT+TGG 0.463046 5_4:+68242464 Msa0866510:CDS
GATTGGTTTCGGTTCGTCAA+TGG 0.464830 5_4:+68240022 Msa0866510:CDS
TTTATGCCAAAGATGGCAAA+AGG 0.465147 5_4:-68245407 None:intergenic
GTTCCCCTGATGTCGGTACT+AGG 0.468688 5_4:+68243647 Msa0866510:CDS
ACATGAGACAGAAGATGTCT+TGG 0.481154 5_4:-68240068 None:intergenic
TAGGATTAACGGATCCAGAT+TGG 0.485593 5_4:+68245043 Msa0866510:three_prime_UTR
TATCACCTCCAAGGACATAA+GGG 0.487860 5_4:-68242472 None:intergenic
GCCGATGAGCACTGGAGTGA+CGG 0.489465 5_4:+68241362 Msa0866510:CDS
GTTGCTCTATTAGTCAAGAT+AGG 0.494347 5_4:-68239875 None:intergenic
ACGTTGCTTGGCACGGAAGT+CGG 0.495141 5_4:-68242436 None:intergenic
ATCCCCAAGAAAGGAATTTG+TGG 0.496739 5_4:-68243235 None:intergenic
ATGATGTTTCTGATTTAACT+AGG 0.506246 5_4:+68240143 Msa0866510:CDS
TGCCGTCACATCCCCAAGAA+AGG 0.509048 5_4:-68243244 None:intergenic
GGAAGTAAATGAAAATAGGT+AGG 0.511324 5_4:-68238870 None:intergenic
AGCAATGGGAAATAGAAGAA+GGG 0.512568 5_4:+68244876 Msa0866510:CDS
ATTTCTTCAGTGGCATAATG+AGG 0.515220 5_4:+68240895 Msa0866510:intron
AAGCAATGGGAAATAGAAGA+AGG 0.516781 5_4:+68244875 Msa0866510:CDS
CCCAGAATTAAAACTAATGT+AGG 0.517534 5_4:+68245024 Msa0866510:three_prime_UTR
AACCACAAATTCCTTTCTTG+GGG 0.522590 5_4:+68243233 Msa0866510:CDS
CCATGGCACGTTGCTTGGCA+CGG 0.523891 5_4:-68242443 None:intergenic
AAAGTGCTGCCGATGAGCAC+TGG 0.524125 5_4:+68241354 Msa0866510:CDS
TTCCTTTCTTGGGGATGTGA+CGG 0.526745 5_4:+68243242 Msa0866510:CDS
GCCGTTCGTTGAAGATTGGA+TGG 0.529149 5_4:-68245145 None:intergenic
GGATTAACACATATGATCAC+TGG 0.534458 5_4:+68245219 Msa0866510:three_prime_UTR
TAACTATGCCTTTGTTCCAC+AGG 0.536157 5_4:+68238910 Msa0866510:five_prime_UTR
CTTCAGTGGCATAATGAGGA+TGG 0.542595 5_4:+68240899 Msa0866510:intron
TGGTTAAAACACAAACCATT+CGG 0.543258 5_4:-68245125 None:intergenic
TTTCAAGTGCTATGAAGGCC+AGG 0.543283 5_4:+68239791 Msa0866510:five_prime_UTR
GGACATAAGGGCATCTTCCA+TGG 0.546770 5_4:-68242460 None:intergenic
CCCGTCACTCCAGTGCTCAT+CGG 0.553203 5_4:-68241363 None:intergenic
GTTTACCGTCCATTGCATCA+AGG 0.562296 5_4:-68243594 None:intergenic
TCTTATAGACCTTGATGCAA+TGG 0.567724 5_4:+68243585 Msa0866510:CDS
CCGTGCCAAGCAACGTGCCA+TGG 0.568141 5_4:+68242443 Msa0866510:CDS
AGCTGTTGAGCAAGTTATGT+AGG 0.569663 5_4:-68245356 None:intergenic
TCTGCACTTTCTGAAGCAGA+TGG 0.572909 5_4:+68243427 Msa0866510:CDS
TGATTACACTGATCCTGAAG+AGG 0.574801 5_4:+68243453 Msa0866510:CDS
CTTGTTGTAGAGGCTGGCCG+AGG 0.577303 5_4:+68244799 Msa0866510:intron
ACCATCCAATCTTCAACGAA+CGG 0.578245 5_4:+68245144 Msa0866510:three_prime_UTR
ATTATTAGATGGAGACCGAA+TGG 0.579498 5_4:+68245110 Msa0866510:three_prime_UTR
GCAATGGGAAATAGAAGAAG+GGG 0.584212 5_4:+68244877 Msa0866510:CDS
CTTACCTAGTACCGACATCA+GGG 0.585311 5_4:-68243651 None:intergenic
CGATGAGCACTGGAGTGACG+GGG 0.596211 5_4:+68241364 Msa0866510:CDS
AGTATAAAATATCACCTCCA+AGG 0.600169 5_4:-68242481 None:intergenic
GCTTGGCACGGAAGTCGGCA+AGG 0.602685 5_4:-68242431 None:intergenic
AGTCCTGCAGTTACTATAGT+CGG 0.605461 5_4:+68245078 Msa0866510:three_prime_UTR
AAAACTGACCTGTGGAACAA+AGG 0.609208 5_4:-68238918 None:intergenic
TTACCGACTATAGTAACTGC+AGG 0.614594 5_4:-68245081 None:intergenic
ATATGTGTTAATCCTTGACA+TGG 0.616067 5_4:-68245210 None:intergenic
TGTTCTAGTTCCCCTGATGT+CGG 0.616561 5_4:+68243640 Msa0866510:CDS
CTTGTAAGATGCCAATATGC+TGG 0.617005 5_4:+68245255 Msa0866510:three_prime_UTR
TCTTGCTCACCATCATGTCA+TGG 0.617464 5_4:-68242617 None:intergenic
TTGGGGATGTGACGGCAGAA+CGG 0.619552 5_4:+68243250 Msa0866510:CDS
GCAACACTTTGTAGATCACA+TGG 0.633717 5_4:+68239893 Msa0866510:CDS
ACGGCAAACAAAGTTTCAAG+TGG 0.638358 5_4:+68239851 Msa0866510:CDS
CATGCATGCAGTCCATGTCA+AGG 0.641397 5_4:+68245198 Msa0866510:three_prime_UTR
AGATGCCCTTATGTCCTTGG+AGG 0.646483 5_4:+68242467 Msa0866510:CDS
ATAGACCTTGATGCAATGGA+CGG 0.648829 5_4:+68243589 Msa0866510:CDS
AATGGCTGGATTGCTATCCT+CGG 0.650744 5_4:-68244816 None:intergenic
AAGAAAGAATGAGATACACC+TGG 0.651565 5_4:-68239809 None:intergenic
ACGATGCAAAGTTTCTCTCA+CGG 0.666602 5_4:+68240446 Msa0866510:CDS
CACATGGATCTTCATCACCA+AGG 0.668703 5_4:+68239909 Msa0866510:CDS
TTACCTAGTACCGACATCAG+GGG 0.714696 5_4:-68243650 None:intergenic
TATGATGGATGAAAGCACCA+AGG 0.723092 5_4:+68244913 Msa0866510:CDS
GATACTGAGAAAATCGACCG+TGG 0.757796 5_4:+68241156 Msa0866510:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTTATAAAAAAAAAAAAAAA+AGG - chr5_4:68242528-68242547 None:intergenic 0.0%
!! ATAAAAAACTTAATTAGTTA+AGG - chr5_4:68239126-68239145 None:intergenic 10.0%
!!! AATATATTTCTAAAAAGATA+TGG - chr5_4:68240582-68240601 None:intergenic 10.0%
!! TTATTTATAATTCATATGAA+TGG + chr5_4:68242352-68242371 Msa0866510:intron 10.0%
!! ATAGAACAAATTTATTTATT+TGG - chr5_4:68242567-68242586 None:intergenic 10.0%
!! GTTTAAATAATTAAATACTA+CGG - chr5_4:68242950-68242969 None:intergenic 10.0%
!!! TTCTAAAAAAAATGATTTTA+AGG - chr5_4:68244547-68244566 None:intergenic 10.0%
!!! ATTTTAATTATTAGATTTTC+AGG - chr5_4:68244951-68244970 None:intergenic 10.0%
!!! GTTTTTTATACATCTAATAT+TGG + chr5_4:68239137-68239156 Msa0866510:intron 15.0%
!! AGTTTGACATATAATAAAAT+TGG - chr5_4:68240242-68240261 None:intergenic 15.0%
!!! ATTTTATTATATGTCAAACT+AGG + chr5_4:68240242-68240261 Msa0866510:intron 15.0%
!!! TCTTTTTAGAAATATATTGT+TGG + chr5_4:68240584-68240603 Msa0866510:intron 15.0%
!!! ACATTTAATTATCTAGAATA+TGG - chr5_4:68240805-68240824 None:intergenic 15.0%
!! TATATCACATTATTTAAACA+AGG - chr5_4:68240995-68241014 None:intergenic 15.0%
!! AAAAAATAGTTACATTTCAA+TGG - chr5_4:68241047-68241066 None:intergenic 15.0%
!!! TCACTTTTAATCAATTTTTT+AGG - chr5_4:68241924-68241943 None:intergenic 15.0%
!!! CTTTATTTCTAAAAAATATG+TGG + chr5_4:68243927-68243946 Msa0866510:intron 15.0%
!! TATCAATATGAATATGAATA+GGG + chr5_4:68244088-68244107 Msa0866510:intron 15.0%
!! TTAAAACCTTATAATTGAAA+TGG + chr5_4:68244211-68244230 Msa0866510:intron 15.0%
!!! TTTTGGAAGTAAATGAAAAT+AGG - chr5_4:68238877-68238896 None:intergenic 20.0%
!!! GTTAGTTTTTCAACTTTTTT+TGG - chr5_4:68238894-68238913 None:intergenic 20.0%
!! TGATTCTTAAAAGAAATGTT+TGG + chr5_4:68239279-68239298 Msa0866510:intron 20.0%
!! TTAAAAGAAATGTTTGGATA+AGG + chr5_4:68239285-68239304 Msa0866510:intron 20.0%
!! AAAGTTATGTTTAACTACTA+AGG - chr5_4:68239479-68239498 None:intergenic 20.0%
!!! TTTTAATTATGCAATGCTTA+GGG - chr5_4:68239513-68239532 None:intergenic 20.0%
!!! TTTTTAATTATGCAATGCTT+AGG - chr5_4:68239514-68239533 None:intergenic 20.0%
!!! CATAATTTTCATTCAAAAAC+AGG - chr5_4:68239673-68239692 None:intergenic 20.0%
!!! CTGTTTTTGAATGAAAATTA+TGG + chr5_4:68239671-68239690 Msa0866510:intron 20.0%
!! TAGTGAAATTCACAATTTAT+GGG - chr5_4:68239708-68239727 None:intergenic 20.0%
!! ATAGTGAAATTCACAATTTA+TGG - chr5_4:68239709-68239728 None:intergenic 20.0%
!! AAACAATAAATAAGAGAATG+AGG - chr5_4:68239750-68239769 None:intergenic 20.0%
!! CTAAAAAAATGGTAACAAAA+TGG - chr5_4:68240216-68240235 None:intergenic 20.0%
!! AAAATTGGCAACTAAAAAAA+TGG - chr5_4:68240227-68240246 None:intergenic 20.0%
!! TTTCAATTACAATTGAAAAC+TGG + chr5_4:68240304-68240323 Msa0866510:intron 20.0%
!!! TTAACTAATTATTTCTTCAG+TGG + chr5_4:68240885-68240904 Msa0866510:intron 20.0%
!!! TCTAGAATTTTCAATTTTTC+TGG + chr5_4:68241229-68241248 Msa0866510:intron 20.0%
!! GAAAGAATACTAATTATCAA+TGG + chr5_4:68241260-68241279 Msa0866510:intron 20.0%
!!! AATTTCCGATACTATATTTT+TGG + chr5_4:68241428-68241447 Msa0866510:intron 20.0%
!! ACTAACCAAAAATATAGTAT+CGG - chr5_4:68241436-68241455 None:intergenic 20.0%
!!! AGTGAAAATAGATTTTATAC+AGG + chr5_4:68241629-68241648 Msa0866510:intron 20.0%
!! AAAAATTGATTAAAAGTGAG+AGG + chr5_4:68241925-68241944 Msa0866510:intron 20.0%
!!! CTTAAAAATTGCTTTTATTG+TGG - chr5_4:68242017-68242036 None:intergenic 20.0%
!! TGTATGGGATATTAATATAA+AGG - chr5_4:68242300-68242319 None:intergenic 20.0%
!! AGTTTAAAAGTTATGTCAAA+AGG - chr5_4:68242395-68242414 None:intergenic 20.0%
!! CTTTCTATTAATCAAGTTTA+TGG - chr5_4:68242992-68243011 None:intergenic 20.0%
!!! ACTAAGATTTTAGTATCTAT+AGG + chr5_4:68243384-68243403 Msa0866510:intron 20.0%
!! ATGATGAAAATATGTCAATT+AGG - chr5_4:68243790-68243809 None:intergenic 20.0%
!! TAATTCAATATTGCATAACT+TGG - chr5_4:68243867-68243886 None:intergenic 20.0%
!! TAGAAATAAAGTAATCAGTT+AGG - chr5_4:68243918-68243937 None:intergenic 20.0%
!! GTATCAATATGAATATGAAT+AGG + chr5_4:68244087-68244106 Msa0866510:intron 20.0%
!!! AAAAATGATTTTAAGGAATG+CGG - chr5_4:68244540-68244559 None:intergenic 20.0%
!!! ATTAAAAAAAGCATTTCTAG+TGG - chr5_4:68244686-68244705 None:intergenic 20.0%
!!! GTTTTAAATAATTTCGCAAT+TGG - chr5_4:68244978-68244997 None:intergenic 20.0%
!! TAAAACTAATGTAGGATTAA+CGG + chr5_4:68245032-68245051 Msa0866510:three_prime_UTR 20.0%
! TGATTACTGATCAGAAAATT+AGG + chr5_4:68239166-68239185 Msa0866510:intron 25.0%
! GATTACTGATCAGAAAATTA+GGG + chr5_4:68239167-68239186 Msa0866510:intron 25.0%
! ATAGGAAGATGATTAACTTA+TGG + chr5_4:68239213-68239232 Msa0866510:intron 25.0%
! TAGGAAGATGATTAACTTAT+GGG + chr5_4:68239214-68239233 Msa0866510:intron 25.0%
! AAGAATACAACAATTGATCA+CGG - chr5_4:68239587-68239606 None:intergenic 25.0%
! GAATTTCACTATATCAATGT+TGG + chr5_4:68239717-68239736 Msa0866510:intron 25.0%
!! TAAACAGAATACAGTTTTCA+AGG + chr5_4:68239933-68239952 Msa0866510:CDS 25.0%
!! AAACAGAATACAGTTTTCAA+GGG + chr5_4:68239934-68239953 Msa0866510:CDS 25.0%
!! ATGATGTTTCTGATTTAACT+AGG + chr5_4:68240143-68240162 Msa0866510:CDS 25.0%
!! TATCTTTCTTCTTATCGTTT+TGG + chr5_4:68240268-68240287 Msa0866510:intron 25.0%
! GTTAGCATATAATTAGAATC+AGG - chr5_4:68240484-68240503 None:intergenic 25.0%
!!! ACAGAGACAACATTTTTTTT+TGG - chr5_4:68240530-68240549 None:intergenic 25.0%
! CTGGAAAAGAATTCTTTAAT+CGG + chr5_4:68240618-68240637 Msa0866510:intron 25.0%
! GATTGTATAGTGGTTATTAA+AGG - chr5_4:68240649-68240668 None:intergenic 25.0%
! TTGAGTAATTGATTGTATAG+TGG - chr5_4:68240659-68240678 None:intergenic 25.0%
! AATTTAGCAATCATGATTAG+AGG + chr5_4:68240703-68240722 Msa0866510:intron 25.0%
! TGATTAGAGGAGTTATAATA+TGG + chr5_4:68240716-68240735 Msa0866510:intron 25.0%
! ATTTAACAGATTTACCTCTA+AGG - chr5_4:68241390-68241409 None:intergenic 25.0%
! ATATCTGTGTAACAATTTGT+TGG + chr5_4:68241495-68241514 Msa0866510:intron 25.0%
! TTGATACCATCTTAGAATAT+AGG - chr5_4:68241786-68241805 None:intergenic 25.0%
! ACAAAAATTAGACTCATTGA+TGG + chr5_4:68242123-68242142 Msa0866510:intron 25.0%
! ACAGATTAAAAGGATAAACA+AGG + chr5_4:68242148-68242167 Msa0866510:intron 25.0%
! CTCATTATAGAAATCTGTAT+GGG - chr5_4:68242315-68242334 None:intergenic 25.0%
! TCTCATTATAGAAATCTGTA+TGG - chr5_4:68242316-68242335 None:intergenic 25.0%
! TTAATATTTACTCATTCACC+CGG + chr5_4:68242848-68242867 Msa0866510:intron 25.0%
! CTTTCAGAAAATAATGTTAG+AGG + chr5_4:68243183-68243202 Msa0866510:intron 25.0%
!! TTCTTTTCCATTTTCTTTTC+AGG + chr5_4:68243295-68243314 Msa0866510:intron 25.0%
! ATGAATGCATAAATAGTGAT+AGG - chr5_4:68243517-68243536 None:intergenic 25.0%
! AATCATACTAATGAACATCA+TGG - chr5_4:68243740-68243759 None:intergenic 25.0%
! ATGATGTTCATTAGTATGAT+TGG + chr5_4:68243739-68243758 Msa0866510:intron 25.0%
!! ATTTTCATCATTCTTTGACA+AGG + chr5_4:68243799-68243818 Msa0866510:intron 25.0%
!! TTTTACACTTGCTCTTTATT+TGG - chr5_4:68243997-68244016 None:intergenic 25.0%
! AGTGTAAAATATGTGAGTAT+AGG + chr5_4:68244008-68244027 Msa0866510:intron 25.0%
! TCATGATATATATGAACGTA+TGG - chr5_4:68244042-68244061 None:intergenic 25.0%
! TTTCAGTTCATATATAGCTT+TGG - chr5_4:68244855-68244874 None:intergenic 25.0%
! TATATGAACTGAAAAAGCAA+TGG + chr5_4:68244861-68244880 Msa0866510:CDS 25.0%
! ATATGAACTGAAAAAGCAAT+GGG + chr5_4:68244862-68244881 Msa0866510:CDS 25.0%
!!! CTACATTAGTTTTAATTCTG+GGG - chr5_4:68245026-68245045 None:intergenic 25.0%
!!! CCTACATTAGTTTTAATTCT+GGG - chr5_4:68245027-68245046 None:intergenic 25.0%
!!! TCCTACATTAGTTTTAATTC+TGG - chr5_4:68245028-68245047 None:intergenic 25.0%
! CAAATATGCATCTATATATG+AGG - chr5_4:68245299-68245318 None:intergenic 25.0%
!!! ACTATACTTGTTGTAATGTA+AGG + chr5_4:68245328-68245347 Msa0866510:three_prime_UTR 25.0%
GGAAGTAAATGAAAATAGGT+AGG - chr5_4:68238873-68238892 None:intergenic 30.0%
AAACTTAACAGCATCAATAC+AGG - chr5_4:68239073-68239092 None:intergenic 30.0%
AGGAAGATGATTAACTTATG+GGG + chr5_4:68239215-68239234 Msa0866510:intron 30.0%
GACTCATATTCACTGATAAA+TGG + chr5_4:68239321-68239340 Msa0866510:intron 30.0%
! AGATATTTCAAGTGCTATGA+AGG + chr5_4:68239786-68239805 Msa0866510:five_prime_UTR 30.0%
TTCTTTCTTTGATCTTCTGA+TGG + chr5_4:68239823-68239842 Msa0866510:exon 30.0%
AACTGTATTCTGTTTATCCT+TGG - chr5_4:68239929-68239948 None:intergenic 30.0%
GATCAACCTTATTCAATGAT+TGG + chr5_4:68240005-68240024 Msa0866510:CDS 30.0%
!! CCTTATTCAATGATTGGTTT+CGG + chr5_4:68240011-68240030 Msa0866510:CDS 30.0%
!! ACGATCATTTTTCTCATCTT+CGG - chr5_4:68240380-68240399 None:intergenic 30.0%
! TATAATTAGAATCAGGTTGC+TGG - chr5_4:68240477-68240496 None:intergenic 30.0%
TATGCTAACAGTATTGTTTC+TGG + chr5_4:68240495-68240514 Msa0866510:intron 30.0%
!!! GAGACAACATTTTTTTTTGG+TGG - chr5_4:68240527-68240546 None:intergenic 30.0%
ATTGTTGGAGATATATGAAC+TGG + chr5_4:68240599-68240618 Msa0866510:intron 30.0%
CAATATTATATCCTCATGTG+TGG + chr5_4:68240853-68240872 Msa0866510:intron 30.0%
AACAATTATTTCCACACATG+AGG - chr5_4:68240867-68240886 None:intergenic 30.0%
ACAGAATTTCTCAAACTTGA+TGG + chr5_4:68240957-68240976 Msa0866510:CDS 30.0%
! AATGTAAGTTGACCATGTAA+GGG - chr5_4:68241102-68241121 None:intergenic 30.0%
! AAATGTAAGTTGACCATGTA+AGG - chr5_4:68241103-68241122 None:intergenic 30.0%
ATACAGTAGCAATACGATTA+AGG - chr5_4:68241203-68241222 None:intergenic 30.0%
! GTCTAATGTTTGAAGTGATA+TGG + chr5_4:68241685-68241704 Msa0866510:intron 30.0%
!! CTGAAAAGGTGTTTATAAGA+GGG + chr5_4:68241709-68241728 Msa0866510:intron 30.0%
AAAACCAATTTACAAGGTGA+GGG - chr5_4:68241741-68241760 None:intergenic 30.0%
AAAAACCAATTTACAAGGTG+AGG - chr5_4:68241742-68241761 None:intergenic 30.0%
CCTACAAAAACCAATTTACA+AGG - chr5_4:68241747-68241766 None:intergenic 30.0%
!!! CCTTGTAAATTGGTTTTTGT+AGG + chr5_4:68241744-68241763 Msa0866510:intron 30.0%
TGAATCATTTGGATGTGATA+TGG + chr5_4:68241898-68241917 Msa0866510:intron 30.0%
ATGACATTATCAGTGTAAAC+AGG - chr5_4:68242088-68242107 None:intergenic 30.0%
! ATTGATGGACACAGATTAAA+AGG + chr5_4:68242138-68242157 Msa0866510:intron 30.0%
!! AATGAGAGATAAGAAGTGTT+TGG + chr5_4:68242329-68242348 Msa0866510:intron 30.0%
!! AAAAGGAGTCTTGTATTTTC+TGG - chr5_4:68242378-68242397 None:intergenic 30.0%
! GACATAACTTTTAAACTGTC+AGG + chr5_4:68242398-68242417 Msa0866510:intron 30.0%
AGTATAAAATATCACCTCCA+AGG - chr5_4:68242484-68242503 None:intergenic 30.0%
ATGTTTCATTCGATGTTTGT+TGG + chr5_4:68242700-68242719 Msa0866510:intron 30.0%
! CTCATAGTGTATTGATAAGA+AGG + chr5_4:68242729-68242748 Msa0866510:intron 30.0%
TAATATTTACTCATTCACCC+GGG + chr5_4:68242849-68242868 Msa0866510:intron 30.0%
AAATATGAAAAACGCAGACA+AGG - chr5_4:68243091-68243110 None:intergenic 30.0%
! AGTCCTATTTTCAGAGATAA+GGG + chr5_4:68243156-68243175 Msa0866510:intron 30.0%
AACAGAACCTGAAAAGAAAA+TGG - chr5_4:68243305-68243324 None:intergenic 30.0%
TCCAGATTCATACTGAATTA+GGG - chr5_4:68243345-68243364 None:intergenic 30.0%
TTCCAGATTCATACTGAATT+AGG - chr5_4:68243346-68243365 None:intergenic 30.0%
GTCGATCATAAAACTTTATC+AGG - chr5_4:68243491-68243510 None:intergenic 30.0%
CTGAAAGATCTTAACATCAA+AGG - chr5_4:68243680-68243699 None:intergenic 30.0%
TAATGAACATCATGGCATAT+AGG - chr5_4:68243732-68243751 None:intergenic 30.0%
AATAGTACAAACTCATATCG+CGG - chr5_4:68243767-68243786 None:intergenic 30.0%
TAACATTCATAGAGATCACT+TGG + chr5_4:68243960-68243979 Msa0866510:intron 30.0%
TGAGATGATAATATGCTAGA+TGG - chr5_4:68244138-68244157 None:intergenic 30.0%
! AGTTTAAAGAGAGAGTACAA+AGG - chr5_4:68244192-68244211 None:intergenic 30.0%
AGCTAGCCATTTCAATTATA+AGG - chr5_4:68244220-68244239 None:intergenic 30.0%
CTACGAAAAATGACAAATCA+CGG - chr5_4:68244380-68244399 None:intergenic 30.0%
CCCAGAATTAAAACTAATGT+AGG + chr5_4:68245024-68245043 Msa0866510:three_prime_UTR 30.0%
GGTAAACGTCAATTATTAGA+TGG + chr5_4:68245099-68245118 Msa0866510:three_prime_UTR 30.0%
TGGTTAAAACACAAACCATT+CGG - chr5_4:68245128-68245147 None:intergenic 30.0%
ATATGTGTTAATCCTTGACA+TGG - chr5_4:68245213-68245232 None:intergenic 30.0%
! ATGCATTTTTATGCCAAAGA+TGG - chr5_4:68245417-68245436 None:intergenic 30.0%
!!! CATCAATATTTTTGGAACGT+AGG - chr5_4:68245459-68245478 None:intergenic 30.0%
!! ACCATGTGTTGCTTTGAAAT+AGG + chr5_4:68239195-68239214 Msa0866510:intron 35.0%
TCCTATTTCAAAGCAACACA+TGG - chr5_4:68239199-68239218 None:intergenic 35.0%
AAGAAAGAATGAGATACACC+TGG - chr5_4:68239812-68239831 None:intergenic 35.0%
GTTGCTCTATTAGTCAAGAT+AGG - chr5_4:68239878-68239897 None:intergenic 35.0%
CCGAAACCAATCATTGAATA+AGG - chr5_4:68240014-68240033 None:intergenic 35.0%
GTCTTGGAGATTAAACTAAC+TGG - chr5_4:68240055-68240074 None:intergenic 35.0%
TCTGTCTCATGTAAATCAAC+AGG + chr5_4:68240079-68240098 Msa0866510:CDS 35.0%
! ACTCGAGCTGACTTAAATAT+TGG + chr5_4:68240745-68240764 Msa0866510:intron 35.0%
ATTTCTTCAGTGGCATAATG+AGG + chr5_4:68240895-68240914 Msa0866510:intron 35.0%
GAGAAATTCTGTCCCTAAAA+AGG - chr5_4:68240949-68240968 None:intergenic 35.0%
! ATGTAAGTTGACCATGTAAG+GGG - chr5_4:68241101-68241120 None:intergenic 35.0%
!! TAGCTTTTTCTTTGACACCA+CGG - chr5_4:68241176-68241195 None:intergenic 35.0%
! CCTCTTATAAACACCTTTTC+AGG - chr5_4:68241711-68241730 None:intergenic 35.0%
!! CCTGAAAAGGTGTTTATAAG+AGG + chr5_4:68241708-68241727 Msa0866510:intron 35.0%
ATATCCCTCACCTTGTAAAT+TGG + chr5_4:68241734-68241753 Msa0866510:intron 35.0%
!! GGTTTTTGTAGGTTTGAGTT+AGG + chr5_4:68241755-68241774 Msa0866510:intron 35.0%
! GCTGAACCTATATTCTAAGA+TGG + chr5_4:68241777-68241796 Msa0866510:intron 35.0%
CACTGTAGTTGTCTAATACT+TGG + chr5_4:68241854-68241873 Msa0866510:intron 35.0%
ACATCCAAATGATTCACTGT+GGG - chr5_4:68241894-68241913 None:intergenic 35.0%
ACCTACAAAACAGGTTTGTA+GGG - chr5_4:68241960-68241979 None:intergenic 35.0%
AACCTACAAAACAGGTTTGT+AGG - chr5_4:68241961-68241980 None:intergenic 35.0%
ACGATATTAGAACTTGGGTT+TGG - chr5_4:68241993-68242012 None:intergenic 35.0%
GTGGTACGATATTAGAACTT+GGG - chr5_4:68241998-68242017 None:intergenic 35.0%
TGTGGTACGATATTAGAACT+TGG - chr5_4:68241999-68242018 None:intergenic 35.0%
! AAAGGATAAACAAGGTGTTC+TGG + chr5_4:68242156-68242175 Msa0866510:intron 35.0%
AGCAACTCTGTAATTAAGTG+TGG - chr5_4:68242257-68242276 None:intergenic 35.0%
CAAAAACATCCATGACATGA+TGG + chr5_4:68242608-68242627 Msa0866510:CDS 35.0%
TAAATACTACGGTCCAGTTT+GGG - chr5_4:68242939-68242958 None:intergenic 35.0%
TTAAATACTACGGTCCAGTT+TGG - chr5_4:68242940-68242959 None:intergenic 35.0%
CATTGTCAGAAAAGCAAACT+CGG - chr5_4:68243127-68243146 None:intergenic 35.0%
!! TTGCTTTTCTGACAATGTTG+TGG + chr5_4:68243130-68243149 Msa0866510:intron 35.0%
! CAGTCCTATTTTCAGAGATA+AGG + chr5_4:68243155-68243174 Msa0866510:intron 35.0%
CGAATCATGCTTGAAAAGAA+TGG + chr5_4:68243207-68243226 Msa0866510:CDS 35.0%
AGAACCACAAATTCCTTTCT+TGG + chr5_4:68243231-68243250 Msa0866510:CDS 35.0%
GAACCACAAATTCCTTTCTT+GGG + chr5_4:68243232-68243251 Msa0866510:CDS 35.0%
AACCACAAATTCCTTTCTTG+GGG + chr5_4:68243233-68243252 Msa0866510:CDS 35.0%
CCAGATTCATACTGAATTAG+GGG - chr5_4:68243344-68243363 None:intergenic 35.0%
AGTATCTATAGGAAGCTTAC+TGG + chr5_4:68243395-68243414 Msa0866510:intron 35.0%
TCTTATAGACCTTGATGCAA+TGG + chr5_4:68243585-68243604 Msa0866510:CDS 35.0%
GTCAAAACATTCTCAAATGC+AGG + chr5_4:68243821-68243840 Msa0866510:intron 35.0%
AACGTGTCAACTTTGCTAAA+GGG - chr5_4:68244774-68244793 None:intergenic 35.0%
AAACGTGTCAACTTTGCTAA+AGG - chr5_4:68244775-68244794 None:intergenic 35.0%
TTTAGCAAAGTTGACACGTT+TGG + chr5_4:68244774-68244793 Msa0866510:intron 35.0%
AAGCAATGGGAAATAGAAGA+AGG + chr5_4:68244875-68244894 Msa0866510:CDS 35.0%
AGCAATGGGAAATAGAAGAA+GGG + chr5_4:68244876-68244895 Msa0866510:CDS 35.0%
AAATAGAAGAAGGGGATAGT+TGG + chr5_4:68244885-68244904 Msa0866510:CDS 35.0%
! TCAGGTTTCATTTTCTTCCT+TGG - chr5_4:68244933-68244952 None:intergenic 35.0%
!!! CATTAGTTTTAATTCTGGGG+AGG - chr5_4:68245023-68245042 None:intergenic 35.0%
ATTATTAGATGGAGACCGAA+TGG + chr5_4:68245110-68245129 Msa0866510:three_prime_UTR 35.0%
GGATTAACACATATGATCAC+TGG + chr5_4:68245219-68245238 Msa0866510:three_prime_UTR 35.0%
AATGCATATGACCAGCATAT+TGG - chr5_4:68245269-68245288 None:intergenic 35.0%
! TCAACAGCTATGCTTTTATC+TGG + chr5_4:68245370-68245389 Msa0866510:three_prime_UTR 35.0%
! CAACAGCTATGCTTTTATCT+GGG + chr5_4:68245371-68245390 Msa0866510:three_prime_UTR 35.0%
TTTATGCCAAAGATGGCAAA+AGG - chr5_4:68245410-68245429 None:intergenic 35.0%
TAACTATGCCTTTGTTCCAC+AGG + chr5_4:68238910-68238929 Msa0866510:five_prime_UTR 40.0%
AAAACTGACCTGTGGAACAA+AGG - chr5_4:68238921-68238940 None:intergenic 40.0%
GAAAGCTAAAAACTGACCTG+TGG - chr5_4:68238929-68238948 None:intergenic 40.0%
! CTTTGGCTCATTCGTATGTT+GGG + chr5_4:68239409-68239428 Msa0866510:intron 40.0%
TGATCTTCTGATGGCACTTA+CGG + chr5_4:68239832-68239851 Msa0866510:exon 40.0%
ACGGCAAACAAAGTTTCAAG+TGG + chr5_4:68239851-68239870 Msa0866510:CDS 40.0%
GCAACACTTTGTAGATCACA+TGG + chr5_4:68239893-68239912 Msa0866510:CDS 40.0%
TCAAGGGTTAGACTCGAAAA+TGG + chr5_4:68239950-68239969 Msa0866510:CDS 40.0%
ACATGAGACAGAAGATGTCT+TGG - chr5_4:68240071-68240090 None:intergenic 40.0%
TGTCTCCTGTACATGTGAAA+GGG - chr5_4:68240355-68240374 None:intergenic 40.0%
ATGTCTCCTGTACATGTGAA+AGG - chr5_4:68240356-68240375 None:intergenic 40.0%
GAGAAACTTTGCATCGTTAC+AGG - chr5_4:68240443-68240462 None:intergenic 40.0%
ACGATGCAAAGTTTCTCTCA+CGG + chr5_4:68240446-68240465 Msa0866510:CDS 40.0%
ATATGGCAGATGAACAGTAG+TGG - chr5_4:68240565-68240584 None:intergenic 40.0%
! GCCAAGATGTTGCCTTTTTA+GGG + chr5_4:68240934-68240953 Msa0866510:CDS 40.0%
TCCCTAAAAAGGCAACATCT+TGG - chr5_4:68240938-68240957 None:intergenic 40.0%
TACACTACATTCCCCTTACA+TGG + chr5_4:68241087-68241106 Msa0866510:intron 40.0%
ATATCCACTGCAGATCTTGA+AGG + chr5_4:68241310-68241329 Msa0866510:intron 40.0%
ATATCCTTCAAGATCTGCAG+TGG - chr5_4:68241317-68241336 None:intergenic 40.0%
TGCAATGGAGGAGAAAAACT+AGG - chr5_4:68241597-68241616 None:intergenic 40.0%
TCCTCCATTGCAGATTAATG+TGG + chr5_4:68241605-68241624 Msa0866510:intron 40.0%
ACTGCCACATTAATCTGCAA+TGG - chr5_4:68241612-68241631 None:intergenic 40.0%
TGAAGTGATATGGCCTGAAA+AGG + chr5_4:68241695-68241714 Msa0866510:intron 40.0%
CACATCCAAATGATTCACTG+TGG - chr5_4:68241895-68241914 None:intergenic 40.0%
! ACCCTACAAACCTGTTTTGT+AGG + chr5_4:68241956-68241975 Msa0866510:intron 40.0%
CCAACTCAAACCTACAAAAC+AGG - chr5_4:68241969-68241988 None:intergenic 40.0%
! CCTGTTTTGTAGGTTTGAGT+TGG + chr5_4:68241966-68241985 Msa0866510:intron 40.0%
ACAAACTCTAACCCAACAAG+AGG - chr5_4:68242225-68242244 None:intergenic 40.0%
TATCACCTCCAAGGACATAA+GGG - chr5_4:68242475-68242494 None:intergenic 40.0%
ATATCACCTCCAAGGACATA+AGG - chr5_4:68242476-68242495 None:intergenic 40.0%
AAATACTACGGTCCAGTTTG+GGG - chr5_4:68242938-68242957 None:intergenic 40.0%
TTCCGAGATGTAGACACAAT+TGG + chr5_4:68243031-68243050 Msa0866510:intron 40.0%
AGCCAATTGTGTCTACATCT+CGG - chr5_4:68243036-68243055 None:intergenic 40.0%
TGAAAAACGCAGACAAGGAA+AGG - chr5_4:68243086-68243105 None:intergenic 40.0%
! GAGCCCTTATCTCTGAAAAT+AGG - chr5_4:68243162-68243181 None:intergenic 40.0%
ATCCCCAAGAAAGGAATTTG+TGG - chr5_4:68243238-68243257 None:intergenic 40.0%
CCCCTAATTCAGTATGAATC+TGG + chr5_4:68243341-68243360 Msa0866510:intron 40.0%
ATAGGAAGCTTACTGGAGTA+TGG + chr5_4:68243402-68243421 Msa0866510:intron 40.0%
TGATTACACTGATCCTGAAG+AGG + chr5_4:68243453-68243472 Msa0866510:CDS 40.0%
GAAGCTAAACTAACCTCTTC+AGG - chr5_4:68243469-68243488 None:intergenic 40.0%
ATAGACCTTGATGCAATGGA+CGG + chr5_4:68243589-68243608 Msa0866510:CDS 40.0%
ATCATGGCATATAGGTGCAT+TGG - chr5_4:68243724-68243743 None:intergenic 40.0%
! ACACTTGCTCTTTATTTGGC+AGG - chr5_4:68243993-68244012 None:intergenic 40.0%
CGGACAAGGAAAATAAGCAA+AGG - chr5_4:68244262-68244281 None:intergenic 40.0%
TTTCCAAGAGTCCACATAGA+TGG - chr5_4:68244333-68244352 None:intergenic 40.0%
!! ACGTTTGGTTCTTGTTGTAG+AGG + chr5_4:68244789-68244808 Msa0866510:intron 40.0%
GCAATGGGAAATAGAAGAAG+GGG + chr5_4:68244877-68244896 Msa0866510:CDS 40.0%
GGATAGTTGGAGGTTTATGA+TGG + chr5_4:68244898-68244917 Msa0866510:CDS 40.0%
!! TATGATGGATGAAAGCACCA+AGG + chr5_4:68244913-68244932 Msa0866510:CDS 40.0%
! TAGGATTAACGGATCCAGAT+TGG + chr5_4:68245043-68245062 Msa0866510:three_prime_UTR 40.0%
AGTCCTGCAGTTACTATAGT+CGG + chr5_4:68245078-68245097 Msa0866510:three_prime_UTR 40.0%
! TTACCGACTATAGTAACTGC+AGG - chr5_4:68245084-68245103 None:intergenic 40.0%
ACCATCCAATCTTCAACGAA+CGG + chr5_4:68245144-68245163 Msa0866510:three_prime_UTR 40.0%
CTTGTAAGATGCCAATATGC+TGG + chr5_4:68245255-68245274 Msa0866510:three_prime_UTR 40.0%
AGCTGTTGAGCAAGTTATGT+AGG - chr5_4:68245359-68245378 None:intergenic 40.0%
! GACTTTCCTTTTGCCATCTT+TGG + chr5_4:68245401-68245420 Msa0866510:three_prime_UTR 40.0%
TACGAATGAGCCAAAGCCAA+AGG - chr5_4:68239405-68239424 None:intergenic 45.0%
! GCTTTGGCTCATTCGTATGT+TGG + chr5_4:68239408-68239427 Msa0866510:intron 45.0%
TATGTTGGGTTACGACGACT+AGG + chr5_4:68239423-68239442 Msa0866510:intron 45.0%
! TGCTCTGCTGTCTAAGACAT+CGG + chr5_4:68239545-68239564 Msa0866510:intron 45.0%
! TTTCAAGTGCTATGAAGGCC+AGG + chr5_4:68239791-68239810 Msa0866510:five_prime_UTR 45.0%
CACATGGATCTTCATCACCA+AGG + chr5_4:68239909-68239928 Msa0866510:CDS 45.0%
!! GATTGGTTTCGGTTCGTCAA+TGG + chr5_4:68240022-68240041 Msa0866510:CDS 45.0%
AGAGACCCTTTCACATGTAC+AGG + chr5_4:68240347-68240366 Msa0866510:intron 45.0%
CTTCAGTGGCATAATGAGGA+TGG + chr5_4:68240899-68240918 Msa0866510:intron 45.0%
! CGCCAAGATGTTGCCTTTTT+AGG + chr5_4:68240933-68240952 Msa0866510:CDS 45.0%
CTCTACTATGCTGCATAGCT+CGG + chr5_4:68241124-68241143 Msa0866510:intron 45.0%
TCTACTATGCTGCATAGCTC+GGG + chr5_4:68241125-68241144 Msa0866510:intron 45.0%
GATACTGAGAAAATCGACCG+TGG + chr5_4:68241156-68241175 Msa0866510:CDS 45.0%
! ATCGGCAGCACTTTTCAATC+TGG - chr5_4:68241348-68241367 None:intergenic 45.0%
GCCACATTAATCTGCAATGG+AGG - chr5_4:68241609-68241628 None:intergenic 45.0%
! ATCCGTGAGCCACTCATTTT+CGG + chr5_4:68241818-68241837 Msa0866510:intron 45.0%
GAGTCCCACAGTGAATCATT+TGG + chr5_4:68241887-68241906 Msa0866510:intron 45.0%
! AGGTGTTCTGGTAATGAGCA+TGG + chr5_4:68242168-68242187 Msa0866510:intron 45.0%
! GGTGTTCTGGTAATGAGCAT+GGG + chr5_4:68242169-68242188 Msa0866510:intron 45.0%
! TTCTGGTAATGAGCATGGGT+TGG + chr5_4:68242173-68242192 Msa0866510:intron 45.0%
TACTTCGCATGCGTTCACTT+AGG + chr5_4:68242500-68242519 Msa0866510:intron 45.0%
TCTTGCTCACCATCATGTCA+TGG - chr5_4:68242620-68242639 None:intergenic 45.0%
! GTATTGATAAGAAGGCTGCG+TGG + chr5_4:68242737-68242756 Msa0866510:intron 45.0%
CCAGTTTACAAGATTACCCC+TGG - chr5_4:68242787-68242806 None:intergenic 45.0%
CCAGGGGTAATCTTGTAAAC+TGG + chr5_4:68242784-68242803 Msa0866510:intron 45.0%
GAGGTCTTGAATTCAAACCC+GGG - chr5_4:68242869-68242888 None:intergenic 45.0%
GGAGGTCTTGAATTCAAACC+CGG - chr5_4:68242870-68242889 None:intergenic 45.0%
CTCCAACTCCTTTAACCCTT+CGG + chr5_4:68242886-68242905 Msa0866510:intron 45.0%
AATACTACGGTCCAGTTTGG+GGG - chr5_4:68242937-68242956 None:intergenic 45.0%
CTACATCTCGGAATTCAGAG+CGG - chr5_4:68243024-68243043 None:intergenic 45.0%
TTCCTTTCTTGGGGATGTGA+CGG + chr5_4:68243242-68243261 Msa0866510:CDS 45.0%
!! AGAACGGATTACTGCTCTTC+AGG + chr5_4:68243266-68243285 Msa0866510:CDS 45.0%
!! TCTGCACTTTCTGAAGCAGA+TGG + chr5_4:68243427-68243446 Msa0866510:CDS 45.0%
GTTTACCGTCCATTGCATCA+AGG - chr5_4:68243597-68243616 None:intergenic 45.0%
!! TGTTCTAGTTCCCCTGATGT+CGG + chr5_4:68243640-68243659 Msa0866510:CDS 45.0%
!! TTACCTAGTACCGACATCAG+GGG - chr5_4:68243653-68243672 None:intergenic 45.0%
!! CTTACCTAGTACCGACATCA+GGG - chr5_4:68243654-68243673 None:intergenic 45.0%
CGTCTAGAAGTTCACATGCA+CGG - chr5_4:68244282-68244301 None:intergenic 45.0%
! TTCTAGACGAGCTTTAGCGA+AGG + chr5_4:68244293-68244312 Msa0866510:intron 45.0%
! TTGGTTCTTGTTGTAGAGGC+TGG + chr5_4:68244793-68244812 Msa0866510:intron 45.0%
AATGGCTGGATTGCTATCCT+CGG - chr5_4:68244819-68244838 None:intergenic 45.0%
TAGAAGAAGGGGATAGTTGG+AGG + chr5_4:68244888-68244907 Msa0866510:CDS 45.0%
CTTTGTGTCTGCAACCAATC+TGG - chr5_4:68245060-68245079 None:intergenic 45.0%
AATGGATAGACGCTAGAGCG+TGG + chr5_4:68239339-68239358 Msa0866510:intron 50.0%
TGAGCCAAAGCCAAAGGAGT+AGG - chr5_4:68239399-68239418 None:intergenic 50.0%
TTGGGTTACGACGACTAGGA+GGG + chr5_4:68239427-68239446 Msa0866510:intron 50.0%
TTACGACGACTAGGAGGGTT+GGG + chr5_4:68239432-68239451 Msa0866510:intron 50.0%
! GTCTAAGACATCGGCACAGT+TGG + chr5_4:68239554-68239573 Msa0866510:intron 50.0%
GATCGTGTTCGTTCTGTTCG+TGG + chr5_4:68240394-68240413 Msa0866510:CDS 50.0%
GTCCGAAAATGAGTGGCTCA+CGG - chr5_4:68241823-68241842 None:intergenic 50.0%
! CCACTCATTTTCGGACCACT+CGG + chr5_4:68241827-68241846 Msa0866510:intron 50.0%
! CACTCATTTTCGGACCACTC+GGG + chr5_4:68241828-68241847 Msa0866510:intron 50.0%
!! TGGGTTGGTGTTGTCACACA+TGG + chr5_4:68242188-68242207 Msa0866510:intron 50.0%
!! GGGTTGGTGTTGTCACACAT+GGG + chr5_4:68242189-68242208 Msa0866510:intron 50.0%
GTGTGGCATGACCTCTTGTT+GGG + chr5_4:68242211-68242230 Msa0866510:intron 50.0%
ATCTTCCATGGCACGTTGCT+TGG - chr5_4:68242451-68242470 None:intergenic 50.0%
!! GGACATAAGGGCATCTTCCA+TGG - chr5_4:68242463-68242482 None:intergenic 50.0%
GGAAGATGCCCTTATGTCCT+TGG + chr5_4:68242464-68242483 Msa0866510:CDS 50.0%
AGATGCCCTTATGTCCTTGG+AGG + chr5_4:68242467-68242486 Msa0866510:CDS 50.0%
TTGATAAGAAGGCTGCGTGG+AGG + chr5_4:68242740-68242759 Msa0866510:intron 50.0%
TGATAAGAAGGCTGCGTGGA+GGG + chr5_4:68242741-68242760 Msa0866510:intron 50.0%
CGAAGGGTTAAAGGAGTTGG+AGG - chr5_4:68242888-68242907 None:intergenic 50.0%
AGCCGAAGGGTTAAAGGAGT+TGG - chr5_4:68242891-68242910 None:intergenic 50.0%
GGTTTGAGCCGAAGGGTTAA+AGG - chr5_4:68242897-68242916 None:intergenic 50.0%
!! CTCAACTGGTTTGAGCCGAA+GGG - chr5_4:68242904-68242923 None:intergenic 50.0%
!! ACTCAACTGGTTTGAGCCGA+AGG - chr5_4:68242905-68242924 None:intergenic 50.0%
ATACTACGGTCCAGTTTGGG+GGG - chr5_4:68242936-68242955 None:intergenic 50.0%
!! CCTTACCTAGTACCGACATC+AGG - chr5_4:68243655-68243674 None:intergenic 50.0%
CCTGATGTCGGTACTAGGTA+AGG + chr5_4:68243652-68243671 Msa0866510:intron 50.0%
GAAGTTCACATGCACGGACA+AGG - chr5_4:68244276-68244295 None:intergenic 50.0%
! ACGAGCTTTAGCGAAGGCAT+TGG + chr5_4:68244299-68244318 Msa0866510:intron 50.0%
GCACCATCTATGTGGACTCT+TGG + chr5_4:68244327-68244346 Msa0866510:intron 50.0%
ATGTGGACTCTTGGAAACGC+AGG + chr5_4:68244336-68244355 Msa0866510:intron 50.0%
TGTGGACTCTTGGAAACGCA+GGG + chr5_4:68244337-68244356 Msa0866510:intron 50.0%
ACTCTTGGAAACGCAGGGAT+GGG + chr5_4:68244342-68244361 Msa0866510:intron 50.0%
TTTGGATGCTGCAGCTGCAA+TGG - chr5_4:68244837-68244856 None:intergenic 50.0%
GCCGTTCGTTGAAGATTGGA+TGG - chr5_4:68245148-68245167 None:intergenic 50.0%
CTCAGCCGTTCGTTGAAGAT+TGG - chr5_4:68245152-68245171 None:intergenic 50.0%
CATGCATGCAGTCCATGTCA+AGG + chr5_4:68245198-68245217 Msa0866510:three_prime_UTR 50.0%
! AGCGCCTACTCCTTTGGCTT+TGG + chr5_4:68239392-68239411 Msa0866510:intron 55.0%
GTTGGGTTACGACGACTAGG+AGG + chr5_4:68239426-68239445 Msa0866510:intron 55.0%
GTTACGACGACTAGGAGGGT+TGG + chr5_4:68239431-68239450 Msa0866510:intron 55.0%
TACGACGACTAGGAGGGTTG+GGG + chr5_4:68239433-68239452 Msa0866510:intron 55.0%
CTGCATAGCTCGGGCAAGAA+AGG + chr5_4:68241134-68241153 Msa0866510:intron 55.0%
!! AAAGTGCTGCCGATGAGCAC+TGG + chr5_4:68241354-68241373 Msa0866510:CDS 55.0%
CCGAGTGGTCCGAAAATGAG+TGG - chr5_4:68241830-68241849 None:intergenic 55.0%
CAACTACAGTGTGACCCGAG+TGG - chr5_4:68241845-68241864 None:intergenic 55.0%
! GGTGTTGTCACACATGGGTG+TGG + chr5_4:68242194-68242213 Msa0866510:intron 55.0%
GGTGTGGCATGACCTCTTGT+TGG + chr5_4:68242210-68242229 Msa0866510:intron 55.0%
ACGTTGCTTGGCACGGAAGT+CGG - chr5_4:68242439-68242458 None:intergenic 55.0%
ATTACCCCTGGACCGTACCA+CGG - chr5_4:68242775-68242794 None:intergenic 55.0%
TACTACGGTCCAGTTTGGGG+GGG - chr5_4:68242935-68242954 None:intergenic 55.0%
TGCCGTCACATCCCCAAGAA+AGG - chr5_4:68243247-68243266 None:intergenic 55.0%
TTGGGGATGTGACGGCAGAA+CGG + chr5_4:68243250-68243269 Msa0866510:CDS 55.0%
GTTCCCCTGATGTCGGTACT+AGG + chr5_4:68243647-68243666 Msa0866510:CDS 55.0%
TGGCAGCAGCACCATCTATG+TGG + chr5_4:68244319-68244338 Msa0866510:intron 55.0%
GACTCTTGGAAACGCAGGGA+TGG + chr5_4:68244341-68244360 Msa0866510:intron 55.0%
CTCTTGGAAACGCAGGGATG+GGG + chr5_4:68244343-68244362 Msa0866510:intron 55.0%
TCTTGGAAACGCAGGGATGG+GGG + chr5_4:68244344-68244363 Msa0866510:intron 55.0%
AAGGAGTAGGCGCTCTCGCA+CGG - chr5_4:68239386-68239405 None:intergenic 60.0%
!! TGCGAGAGCGCCTACTCCTT+TGG + chr5_4:68239386-68239405 Msa0866510:intron 60.0%
!! GCCGATGAGCACTGGAGTGA+CGG + chr5_4:68241362-68241381 Msa0866510:CDS 60.0%
CCCGTCACTCCAGTGCTCAT+CGG - chr5_4:68241366-68241385 None:intergenic 60.0%
!! CCGATGAGCACTGGAGTGAC+GGG + chr5_4:68241363-68241382 Msa0866510:CDS 60.0%
!! CGATGAGCACTGGAGTGACG+GGG + chr5_4:68241364-68241383 Msa0866510:CDS 60.0%
CCATGGCACGTTGCTTGGCA+CGG - chr5_4:68242446-68242465 None:intergenic 60.0%
TTACCCCTGGACCGTACCAC+GGG - chr5_4:68242774-68242793 None:intergenic 60.0%
GGGGGGTTGGGTAACTCAAC+TGG - chr5_4:68242918-68242937 None:intergenic 60.0%
GTTACCCAACCCCCCCAAAC+TGG + chr5_4:68242923-68242942 Msa0866510:intron 60.0%
! CTTGTTGTAGAGGCTGGCCG+AGG + chr5_4:68244799-68244818 Msa0866510:intron 60.0%
GATGCTGCAGCTGCAATGGC+TGG - chr5_4:68244833-68244852 None:intergenic 60.0%
! CTGGAGTGACGGGGCCTTAG+AGG + chr5_4:68241373-68241392 Msa0866510:CDS 65.0%
GCTTGGCACGGAAGTCGGCA+AGG - chr5_4:68242434-68242453 None:intergenic 65.0%
CCGTGCCAAGCAACGTGCCA+TGG + chr5_4:68242443-68242462 Msa0866510:CDS 65.0%
AGGGTGAAGCCCCCGTGGTA+CGG + chr5_4:68242760-68242779 Msa0866510:intron 65.0%
TACCCCTGGACCGTACCACG+GGG - chr5_4:68242773-68242792 None:intergenic 65.0%
CGGTCCAGTTTGGGGGGGTT+GGG - chr5_4:68242930-68242949 None:intergenic 65.0%
ACGGTCCAGTTTGGGGGGGT+TGG - chr5_4:68242931-68242950 None:intergenic 65.0%
!! CGCAGGGATGGGGGCATTAC+AGG + chr5_4:68244353-68244372 Msa0866510:intron 65.0%
AAGCCCCCGTGGTACGGTCC+AGG + chr5_4:68242766-68242785 Msa0866510:intron 70.0%
AGCCCCCGTGGTACGGTCCA+GGG + chr5_4:68242767-68242786 Msa0866510:intron 70.0%
ACCCCTGGACCGTACCACGG+GGG - chr5_4:68242772-68242791 None:intergenic 70.0%
CGTGGAGGGTGAAGCCCCCG+TGG + chr5_4:68242755-68242774 Msa0866510:intron 75.0%
GCCCCCGTGGTACGGTCCAG+GGG + chr5_4:68242768-68242787 Msa0866510:intron 75.0%
Chromosome Type Strat End Strand Name
chr5_4 gene 68238826 68245482 68238826 ID=Msa0866510;Name=Msa0866510
chr5_4 mRNA 68238826 68245482 68238826 ID=Msa0866510-mRNA-1;Parent=Msa0866510;Name=Msa0866510-mRNA-1;_AED=0.18;_eAED=0.18;_QI=167|0.75|0.84|1|0.75|0.76|13|530|395
chr5_4 exon 68238826 68238931 68238826 ID=Msa0866510-mRNA-1:exon:21593;Parent=Msa0866510-mRNA-1
chr5_4 exon 68239781 68240164 68239781 ID=Msa0866510-mRNA-1:exon:21594;Parent=Msa0866510-mRNA-1
chr5_4 exon 68240369 68240467 68240369 ID=Msa0866510-mRNA-1:exon:21595;Parent=Msa0866510-mRNA-1
chr5_4 exon 68240905 68240978 68240905 ID=Msa0866510-mRNA-1:exon:21596;Parent=Msa0866510-mRNA-1
chr5_4 exon 68241142 68241218 68241142 ID=Msa0866510-mRNA-1:exon:21597;Parent=Msa0866510-mRNA-1
chr5_4 exon 68241323 68241394 68241323 ID=Msa0866510-mRNA-1:exon:21598;Parent=Msa0866510-mRNA-1
chr5_4 exon 68242420 68242488 68242420 ID=Msa0866510-mRNA-1:exon:21599;Parent=Msa0866510-mRNA-1
chr5_4 exon 68242603 68242649 68242603 ID=Msa0866510-mRNA-1:exon:21600;Parent=Msa0866510-mRNA-1
chr5_4 exon 68243203 68243287 68243203 ID=Msa0866510-mRNA-1:exon:21601;Parent=Msa0866510-mRNA-1
chr5_4 exon 68243406 68243474 68243406 ID=Msa0866510-mRNA-1:exon:21602;Parent=Msa0866510-mRNA-1
chr5_4 exon 68243565 68243668 68243565 ID=Msa0866510-mRNA-1:exon:21603;Parent=Msa0866510-mRNA-1
chr5_4 exon 68243843 68243867 68243843 ID=Msa0866510-mRNA-1:exon:21604;Parent=Msa0866510-mRNA-1
chr5_4 exon 68244809 68245482 68244809 ID=Msa0866510-mRNA-1:exon:21605;Parent=Msa0866510-mRNA-1
chr5_4 five_prime_UTR 68238826 68238931 68238826 ID=Msa0866510-mRNA-1:five_prime_utr;Parent=Msa0866510-mRNA-1
chr5_4 five_prime_UTR 68239781 68239841 68239781 ID=Msa0866510-mRNA-1:five_prime_utr;Parent=Msa0866510-mRNA-1
chr5_4 CDS 68239842 68240164 68239842 ID=Msa0866510-mRNA-1:cds;Parent=Msa0866510-mRNA-1
chr5_4 CDS 68240369 68240467 68240369 ID=Msa0866510-mRNA-1:cds;Parent=Msa0866510-mRNA-1
chr5_4 CDS 68240905 68240978 68240905 ID=Msa0866510-mRNA-1:cds;Parent=Msa0866510-mRNA-1
chr5_4 CDS 68241142 68241218 68241142 ID=Msa0866510-mRNA-1:cds;Parent=Msa0866510-mRNA-1
chr5_4 CDS 68241323 68241394 68241323 ID=Msa0866510-mRNA-1:cds;Parent=Msa0866510-mRNA-1
chr5_4 CDS 68242420 68242488 68242420 ID=Msa0866510-mRNA-1:cds;Parent=Msa0866510-mRNA-1
chr5_4 CDS 68242603 68242649 68242603 ID=Msa0866510-mRNA-1:cds;Parent=Msa0866510-mRNA-1
chr5_4 CDS 68243203 68243287 68243203 ID=Msa0866510-mRNA-1:cds;Parent=Msa0866510-mRNA-1
chr5_4 CDS 68243406 68243474 68243406 ID=Msa0866510-mRNA-1:cds;Parent=Msa0866510-mRNA-1
chr5_4 CDS 68243565 68243668 68243565 ID=Msa0866510-mRNA-1:cds;Parent=Msa0866510-mRNA-1
chr5_4 CDS 68243843 68243867 68243843 ID=Msa0866510-mRNA-1:cds;Parent=Msa0866510-mRNA-1
chr5_4 CDS 68244809 68244952 68244809 ID=Msa0866510-mRNA-1:cds;Parent=Msa0866510-mRNA-1
chr5_4 three_prime_UTR 68244953 68245482 68244953 ID=Msa0866510-mRNA-1:three_prime_utr;Parent=Msa0866510-mRNA-1
Gene Sequence

>Msa0866510

ATGGCACTTACGGCAAACAAAGTTTCAAGTGGTCCTATCTTGACTAATAGAGCAACACTTTGTAGATCACATGGATCTTCATCACCAAGGATAAACAGAATACAGTTTTCAAGGGTTAGACTCGAAAATGGACATTTGAACAACGATTCTGTTCTCAATGAGAGATCAACCTTATTCAATGATTGGTTTCGGTTCGTCAATGGAAGAAATCCAGTTAGTTTAATCTCCAAGACATCTTCTGTCTCATGTAAATCAACAGGAGCAAATAATACTGAAGAAAAAGAATGTGTTACAACTTATGATGATGTTTCTGATTTAACTAGGAGACATGCCGAAGATGAGAAAAATGATCGTGTTCGTTCTGTTCGTGGCTTGTCTGAAGCTTATAGATTTGCCTGTAACGATGCAAAGTTTCTCTCACGTGGCATAATGAGGATGGATGAGCGTGCGCGCCAAGATGTTGCCTTTTTAGGGACAGAATTTCTCAAACTTGATGCTCGGGCAAGAAAGGATACTGAGAAAATCGACCGTGGTGTCAAAGAAAAAGCTAAGCGCCTTAATCGTATTGCTACTATCTTGAAGGATATCGCTCAGACCAGATTGAAAAGTGCTGCCGATGAGCACTGGAGTGACGGGGCCTTAGAGGCTGATTTGCGCCTTGCCGACTTCCGTGCCAAGCAACGTGCCATGGAAGATGCCCTTATGTCCTTGGAGCTGATCAAAAACATCCATGACATGATGGTGAGCAAGACTTATAACTTAGGTCGAATCATGCTTGAAAAGAATGGAAGAACCACAAATTCCTTTCTTGGGGATGTGACGGCAGAACGGATTACTGCTCTTCAGGAAGCTTACTGGAGTATGGCATCTGCACTTTCTGAAGCAGATGGAATTGATTACACTGATCCTGAAGAGCTTGAGTTGTTAATCACAACTCTTATAGACCTTGATGCAATGGACGGTAAACAAAGTGTATCTTTGTTAGCAGAGTGTTCTAGTTCCCCTGATGTCGGTACTAGGAAAATTAAAATTCTCTCAAACCAAAGGCTGGCCGAGGATAGCAATCCAGCCATTGCAGCTGCAGCATCCAAAGCTATATATGAACTGAAAAAGCAATGGGAAATAGAAGAAGGGGATAGTTGGAGGTTTATGATGGATGAAAGCACCAAGGAAGAAAATGAAACCTGA

Protein sequence

>Msa0866510

MALTANKVSSGPILTNRATLCRSHGSSSPRINRIQFSRVRLENGHLNNDSVLNERSTLFNDWFRFVNGRNPVSLISKTSSVSCKSTGANNTEEKECVTTYDDVSDLTRRHAEDEKNDRVRSVRGLSEAYRFACNDAKFLSRGIMRMDERARQDVAFLGTEFLKLDARARKDTEKIDRGVKEKAKRLNRIATILKDIAQTRLKSAADEHWSDGALEADLRLADFRAKQRAMEDALMSLELIKNIHDMMVSKTYNLGRIMLEKNGRTTNSFLGDVTAERITALQEAYWSMASALSEADGIDYTDPEELELLITTLIDLDAMDGKQSVSLLAECSSSPDVGTRKIKILSNQRLAEDSNPAIAAAASKAIYELKKQWEIEEGDSWRFMMDESTKEENET*