AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0752950


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0752950 MtrunA17_Chr5g0397211 96.581 234 7 1 1 234 1 233 4.57e-164 452
Msa0752950 MtrunA17_Chr7g0234811 69.608 102 30 1 1 102 1 101 1.80e-40 135
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0752950 AT1G63970.1 83.237 173 29 0 62 234 59 231 1.47e-105 305
Msa0752950 AT1G63970.2 81.818 99 18 0 62 160 59 157 3.79e-56 176

Find 72 sgRNAs with CRISPR-Local

Find 241 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCTGGTTATCCTTTAATTAT+TGG 0.154047 5_2:-6634424 Msa0752950:CDS
ATTCTAGTTGCAGTATATTT+TGG 0.206229 5_2:-6630976 Msa0752950:three_prime_UTR
TTAATTCCACCAATAATTAA+AGG 0.221109 5_2:+6634415 None:intergenic
TCACTGTTTGTTTCAGCTTC+AGG 0.284381 5_2:-6634559 Msa0752950:CDS
TTGAGTAGATCATGTTATAT+TGG 0.285529 5_2:-6631142 Msa0752950:three_prime_UTR
CGCTTCTGTGGTAAATATAA+AGG 0.303097 5_2:-6631315 Msa0752950:CDS
AAAGAACAAGAGAATGGAAT+TGG 0.324943 5_2:+6634625 None:intergenic
ACTAGAATGGTAGAAAATTC+TGG 0.334061 5_2:+6630991 None:intergenic
AATGATCACAACAACCAAAA+TGG 0.346987 5_2:+6631029 None:intergenic
CATGAGGCAGGTTATGATAT+TGG 0.350566 5_2:-6631431 Msa0752950:CDS
ACAAAATCTTATAGATTGTC+CGG 0.378334 5_2:-6631093 Msa0752950:three_prime_UTR
GCTTTAGGTCTTCCTGATAT+AGG 0.382227 5_2:-6633395 Msa0752950:CDS
TTGAAGGAGTAGCGGAGATT+GGG 0.383157 5_2:+6634497 None:intergenic
GAAGAAATGACAGTGGAATC+TGG 0.388485 5_2:-6631219 Msa0752950:exon
TTTGAAGGAGTAGCGGAGAT+TGG 0.395299 5_2:+6634496 None:intergenic
TCCTTGTGCGGGCTTAGTTT+CGG 0.399151 5_2:+6631377 None:intergenic
AATTGGGTGAGAAGATTTGA+GGG 0.434016 5_2:+6634642 None:intergenic
CCTTGATAGCATCCTTGTGC+GGG 0.436782 5_2:+6631366 None:intergenic
ATCGATTTCAACTGAGGCTG+TGG 0.440478 5_2:+6634525 None:intergenic
GAATTGGGTGAGAAGATTTG+AGG 0.443328 5_2:+6634641 None:intergenic
GTGGAAGGGTTGTGATTCTT+CGG 0.447373 5_2:-6633345 Msa0752950:CDS
GGTTATCCTTTAATTATTGG+TGG 0.460157 5_2:-6634421 Msa0752950:CDS
AGAATATACTCACAGATTCA+TGG 0.463953 5_2:+6633315 None:intergenic
AAGAACAAGAGAATGGAATT+GGG 0.465781 5_2:+6634626 None:intergenic
CATGAAAAGGTTGATAGCCT+TGG 0.468863 5_2:-6631284 Msa0752950:CDS
AGAGGAAAAGAACAAGAGAA+TGG 0.474971 5_2:+6634619 None:intergenic
AAACCATGGCCAACCCGAAA+AGG 0.483370 5_2:+6634466 None:intergenic
TCCAAGCAGTGCAGATAAGT+TGG 0.486196 5_2:+6631343 None:intergenic
CCCGCACAAGGATGCTATCA+AGG 0.487827 5_2:-6631366 Msa0752950:CDS
AAAATATACTGCAACTAGAA+TGG 0.495434 5_2:+6630978 None:intergenic
TTGGTTGGTTGTTGAAGTTA+AGG 0.496413 5_2:+6634719 None:intergenic
TTCCACTTAGGATCAGAATC+AGG 0.496430 5_2:+6633362 None:intergenic
GATTTGAGGGATACTGTGAA+TGG 0.496789 5_2:+6634655 None:intergenic
GACCTTCATCGATTGGAACC+TGG 0.499572 5_2:-6634442 Msa0752950:CDS
CGAAAAGGAAGAACCTTTGA+AGG 0.510185 5_2:+6634481 None:intergenic
ATTAATATACCTCATGATAG+AGG 0.512773 5_2:-6634397 Msa0752950:CDS
GCCAACTTATCTGCACTGCT+TGG 0.513880 5_2:-6631344 Msa0752950:CDS
GTGATGATTTGATATTATGA+AGG 0.520370 5_2:+6634584 None:intergenic
GCCTTGATAGCATCCTTGTG+CGG 0.528679 5_2:+6631365 None:intergenic
TTCCTGATTCTGATCCTAAG+TGG 0.534340 5_2:-6633364 Msa0752950:CDS
ATTTGAGGGATACTGTGAAT+GGG 0.534812 5_2:+6634656 None:intergenic
TGGAATCTGGAAATATTATG+AGG 0.540881 5_2:-6631206 Msa0752950:three_prime_UTR
GTCAGACTTATGCATGAGGC+AGG 0.542152 5_2:-6631443 Msa0752950:CDS
TCGATTTCAACTGAGGCTGT+GGG 0.542972 5_2:+6634526 None:intergenic
ATTTGATATTATGAAGGGTA+TGG 0.543286 5_2:+6634590 None:intergenic
CCAATAATTAAAGGATAACC+AGG 0.547141 5_2:+6634424 None:intergenic
GAATCACAACCCTTCCACTT+AGG 0.553850 5_2:+6633350 None:intergenic
TGATTCTGATCCTAAGTGGA+AGG 0.553947 5_2:-6633360 Msa0752950:CDS
AATCTCCGCTACTCCTTCAA+AGG 0.556988 5_2:-6634494 Msa0752950:CDS
TAAAACAATGATTAGCAGCC+CGG 0.560681 5_2:+6631074 None:intergenic
TGAAGGGTATGGTGTTTGAG+AGG 0.561305 5_2:+6634601 None:intergenic
AACCAGGTTCCAATCGATGA+AGG 0.565616 5_2:+6634440 None:intergenic
CAAAATCTTATAGATTGTCC+GGG 0.572319 5_2:-6631092 Msa0752950:three_prime_UTR
GGATTTATCGATTTCAACTG+AGG 0.577148 5_2:+6634519 None:intergenic
TGAAGGAGTAGCGGAGATTG+GGG 0.589337 5_2:+6634498 None:intergenic
GGTTGCGAGGCTCATTCTGA+TGG 0.591970 5_2:-6634376 Msa0752950:intron
GCTTGGAGTTGACGCTTCTG+TGG 0.600936 5_2:-6631327 Msa0752950:CDS
AAGATGAAGACATGGTTGGT+TGG 0.608890 5_2:+6634704 None:intergenic
GGATGTTCTGCTTCACTGCG+TGG 0.611052 5_2:-6633435 Msa0752950:CDS
GCCGAAACTAAGCCCGCACA+AGG 0.614038 5_2:-6631378 Msa0752950:CDS
AAGAACCTTTGAAGGAGTAG+CGG 0.614741 5_2:+6634489 None:intergenic
ACCTCATGATAGAGGTTGCG+AGG 0.621758 5_2:-6634389 Msa0752950:CDS
ATGCAACATTGATACTTCAG+AGG 0.627600 5_2:-6631400 Msa0752950:CDS
AGAGAAGATGAAGACATGGT+TGG 0.627751 5_2:+6634700 None:intergenic
GATTCTGATCCTAAGTGGAA+GGG 0.630398 5_2:-6633359 Msa0752950:CDS
ATCGATGAAGGTCAAAACCA+TGG 0.631860 5_2:+6634452 None:intergenic
TGATGATTTGATATTATGAA+GGG 0.636275 5_2:+6634585 None:intergenic
GCCTCGCAACCTCTATCATG+AGG 0.647110 5_2:+6634388 None:intergenic
TTCTAATGAAGAAATGACAG+TGG 0.656226 5_2:-6631226 Msa0752950:exon
GAAGCTGAAACAAACAGTGA+TGG 0.680351 5_2:+6634562 None:intergenic
ACAGGTCAGACTTATGCATG+AGG 0.696663 5_2:-6631447 Msa0752950:intron
TGTTAGAGAAGATGAAGACA+TGG 0.719300 5_2:+6634696 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAGATTATAAAAATGAAAA+GGG + chr5_2:6631393-6631412 None:intergenic 10.0%
!! AAAAGATTATAAAAATGAAA+AGG + chr5_2:6631394-6631413 None:intergenic 10.0%
!! AAGATTATAAAAATGAAAAG+GGG + chr5_2:6631392-6631411 None:intergenic 15.0%
!!! ATCTTTCGTTAATAATTTTA+TGG + chr5_2:6631568-6631587 None:intergenic 15.0%
!! TTTGTAATTTCGAAATATTT+AGG - chr5_2:6631603-6631622 Msa0752950:intron 15.0%
!! TTGTAATTTCGAAATATTTA+GGG - chr5_2:6631604-6631623 Msa0752950:intron 15.0%
!! AATTTAGGGAATATATTAAT+AGG - chr5_2:6632526-6632545 Msa0752950:intron 15.0%
!!! ATTTTTCATTCTTCTAATTT+AGG - chr5_2:6632814-6632833 Msa0752950:intron 15.0%
!!! TTTTTCATTCTTCTAATTTA+GGG - chr5_2:6632815-6632834 Msa0752950:intron 15.0%
!! AAATTATTACTGAGTTAAAA+GGG - chr5_2:6632905-6632924 Msa0752950:intron 15.0%
!!! TTTCCTTGTAAAAAATTTTT+TGG - chr5_2:6633465-6633484 Msa0752950:intron 15.0%
!!! TTCCTTGTAAAAAATTTTTT+GGG - chr5_2:6633466-6633485 Msa0752950:intron 15.0%
!!! TTCTTTTTTATGTAGATATA+TGG - chr5_2:6633524-6633543 Msa0752950:intron 15.0%
!!! TCTTTTTTATGTAGATATAT+GGG - chr5_2:6633525-6633544 Msa0752950:intron 15.0%
!! CAAAATTAATACAATAAAAG+AGG + chr5_2:6634068-6634087 None:intergenic 15.0%
!!! CTCTTTTATTGTATTAATTT+TGG - chr5_2:6634066-6634085 Msa0752950:intron 15.0%
!!! TATCTATACTTGATATTTTT+AGG - chr5_2:6634223-6634242 Msa0752950:intron 15.0%
!!! ATCTATACTTGATATTTTTA+GGG - chr5_2:6634224-6634243 Msa0752950:intron 15.0%
!!! ATATGTTATGATTTTATTAC+AGG - chr5_2:6634256-6634275 Msa0752950:intron 15.0%
!! TGATGATTTGATATTATGAA+GGG + chr5_2:6631139-6631158 None:intergenic 20.0%
!! TTAATTCCACCAATAATTAA+AGG + chr5_2:6631309-6631328 None:intergenic 20.0%
!! AATCAAAATGACTATTAACT+CGG + chr5_2:6631427-6631446 None:intergenic 20.0%
!!! GTAGTGTTTTGAAAATTATA+CGG - chr5_2:6631742-6631761 Msa0752950:intron 20.0%
!! AATTGAGTAAATACTCAATT+TGG + chr5_2:6632218-6632237 None:intergenic 20.0%
!! ATTGAAATACAGTATGATTT+AGG - chr5_2:6632462-6632481 Msa0752950:intron 20.0%
!!! TTCTAATGTTGTTTGAATTT+AGG - chr5_2:6632511-6632530 Msa0752950:intron 20.0%
!!! TCTAATGTTGTTTGAATTTA+GGG - chr5_2:6632512-6632531 Msa0752950:intron 20.0%
!! GAAATTATTACTGAGTTAAA+AGG - chr5_2:6632904-6632923 Msa0752950:intron 20.0%
!! ATATACCTTGTATGTATATA+AGG - chr5_2:6633039-6633058 Msa0752950:intron 20.0%
!! TATACCTTGTATGTATATAA+GGG - chr5_2:6633040-6633059 Msa0752950:intron 20.0%
!! AAACCAATCAGTTTAAATAT+GGG + chr5_2:6633349-6633368 None:intergenic 20.0%
!! ATATATGCCTGTTTAAATAA+GGG + chr5_2:6633379-6633398 None:intergenic 20.0%
!! AATATATGCCTGTTTAAATA+AGG + chr5_2:6633380-6633399 None:intergenic 20.0%
!!! TACCCAAAAAATTTTTTACA+AGG + chr5_2:6633471-6633490 None:intergenic 20.0%
!!! GTATCTGAATTGTTTAAAAT+AGG + chr5_2:6633777-6633796 None:intergenic 20.0%
!!! AAAAATAGCAAAGTTTTGTT+TGG + chr5_2:6633984-6634003 None:intergenic 20.0%
!! ATGGTTGTACAAATTATATT+TGG - chr5_2:6634156-6634175 Msa0752950:intron 20.0%
! ATTTGATATTATGAAGGGTA+TGG + chr5_2:6631134-6631153 None:intergenic 25.0%
! GTGATGATTTGATATTATGA+AGG + chr5_2:6631140-6631159 None:intergenic 25.0%
! ATTAATATACCTCATGATAG+AGG - chr5_2:6631324-6631343 Msa0752950:CDS 25.0%
!!! ATAAATTAGTTGATAGTGGA+TGG - chr5_2:6631664-6631683 Msa0752950:intron 25.0%
! CAAGATAGTTTATGAGAAAA+CGG + chr5_2:6632085-6632104 None:intergenic 25.0%
!!! TTTATTTTCATAAGCTGTTC+TGG - chr5_2:6632135-6632154 Msa0752950:intron 25.0%
! AAAAAATAAGCCAATCCAAA+TGG - chr5_2:6632165-6632184 Msa0752950:intron 25.0%
! AAAAATAAGCCAATCCAAAT+GGG - chr5_2:6632166-6632185 Msa0752950:intron 25.0%
!! ATGATGATGAAATATGAACA+GGG - chr5_2:6632264-6632283 Msa0752950:intron 25.0%
! AATTGAGAAAATAACGTAGA+AGG + chr5_2:6632445-6632464 None:intergenic 25.0%
! AAATCATTATGGTGAACATT+TGG + chr5_2:6632555-6632574 None:intergenic 25.0%
! ACAGAACAAACAAATCATTA+TGG + chr5_2:6632566-6632585 None:intergenic 25.0%
! CCATGAATAATTCATTGAAA+TGG + chr5_2:6632603-6632622 None:intergenic 25.0%
! CCATTTCAATGAATTATTCA+TGG - chr5_2:6632600-6632619 Msa0752950:intron 25.0%
! ACTTTATTATTGAACGAGTT+TGG - chr5_2:6632858-6632877 Msa0752950:intron 25.0%
! AAATAATGACATGAGTTAAC+AGG - chr5_2:6632967-6632986 Msa0752950:intron 25.0%
! ATACATACAAGGTATATGAT+TGG + chr5_2:6633036-6633055 None:intergenic 25.0%
!!! CTGTGTTCAGTTTTTTTAAA+GGG - chr5_2:6633069-6633088 Msa0752950:intron 25.0%
!!! TGTGTTCAGTTTTTTTAAAG+GGG - chr5_2:6633070-6633089 Msa0752950:intron 25.0%
!!! CTTTTTTGTTTGGTACAATA+CGG + chr5_2:6633242-6633261 None:intergenic 25.0%
!!! AAACATCTCTCTTTTTTGTT+TGG + chr5_2:6633252-6633271 None:intergenic 25.0%
! CAAACCAATCAGTTTAAATA+TGG + chr5_2:6633350-6633369 None:intergenic 25.0%
!!! GTGAATAAAAGCTTTTTCTT+CGG + chr5_2:6633722-6633741 None:intergenic 25.0%
! TTTAATAACTGCTAAACACA+TGG + chr5_2:6634104-6634123 None:intergenic 25.0%
! TTGAGTAGATCATGTTATAT+TGG - chr5_2:6634579-6634598 Msa0752950:CDS 25.0%
! ACAAAATCTTATAGATTGTC+CGG - chr5_2:6634628-6634647 Msa0752950:CDS 25.0%
!! GTCAAATTTTGTAACCATTT+TGG - chr5_2:6634678-6634697 Msa0752950:CDS 25.0%
! AAAATATACTGCAACTAGAA+TGG + chr5_2:6634746-6634765 None:intergenic 25.0%
!!! ATTCTAGTTGCAGTATATTT+TGG - chr5_2:6634745-6634764 Msa0752950:five_prime_UTR 25.0%
! GATTGCTGTTGTGAAAAAAA+TGG + chr5_2:6630981-6631000 None:intergenic 30.0%
AAGAACAAGAGAATGGAATT+GGG + chr5_2:6631098-6631117 None:intergenic 30.0%
AAAGAACAAGAGAATGGAAT+TGG + chr5_2:6631099-6631118 None:intergenic 30.0%
CCAATAATTAAAGGATAACC+AGG + chr5_2:6631300-6631319 None:intergenic 30.0%
CCTGGTTATCCTTTAATTAT+TGG - chr5_2:6631297-6631316 Msa0752950:CDS 30.0%
GGTTATCCTTTAATTATTGG+TGG - chr5_2:6631300-6631319 Msa0752950:CDS 30.0%
TATAAAAATGAAAAGGGGCA+TGG + chr5_2:6631387-6631406 None:intergenic 30.0%
!! GTGGATAAATTAGTTGATAG+TGG - chr5_2:6631660-6631679 Msa0752950:intron 30.0%
TCCATTGTAAGTTTGTGATT+AGG - chr5_2:6631774-6631793 Msa0752950:intron 30.0%
CCATTGTAAGTTTGTGATTA+GGG - chr5_2:6631775-6631794 Msa0752950:intron 30.0%
CATTGTAAGTTTGTGATTAG+GGG - chr5_2:6631776-6631795 Msa0752950:intron 30.0%
AATAAGCCAATCCAAACAAA+CGG + chr5_2:6631802-6631821 None:intergenic 30.0%
GGCTTATTTACTATGAAACA+CGG - chr5_2:6631814-6631833 Msa0752950:intron 30.0%
CTCAAAATTATTCTCGACAT+CGG - chr5_2:6631924-6631943 Msa0752950:intron 30.0%
TCAATTTGGTATAGAGTTGT+TGG + chr5_2:6632204-6632223 None:intergenic 30.0%
! CATGATGATGAAATATGAAC+AGG - chr5_2:6632263-6632282 Msa0752950:intron 30.0%
! TGATGATGAAATATGAACAG+GGG - chr5_2:6632265-6632284 Msa0752950:intron 30.0%
AGAATATACTCACAGATTCA+TGG + chr5_2:6632409-6632428 None:intergenic 30.0%
CTGAAAACACAATTACACTA+AGG + chr5_2:6632488-6632507 None:intergenic 30.0%
ATGCAGTGTTAGAACTTAAA+TGG - chr5_2:6632654-6632673 Msa0752950:intron 30.0%
TGCTAAAGTATAAGCATGAT+AGG - chr5_2:6632678-6632697 Msa0752950:intron 30.0%
AAAGTATAAGCATGATAGGA+AGG - chr5_2:6632682-6632701 Msa0752950:intron 30.0%
TTCGGATTGTTAGAATAAGA+TGG - chr5_2:6632751-6632770 Msa0752950:intron 30.0%
TGAAAAATAGATGTAGCAGA+TGG + chr5_2:6632802-6632821 None:intergenic 30.0%
ATTACTGAGTTAAAAGGGTA+AGG - chr5_2:6632910-6632929 Msa0752950:intron 30.0%
GATTCCCTTATATACATACA+AGG + chr5_2:6633047-6633066 None:intergenic 30.0%
!!! GCTGTGTTCAGTTTTTTTAA+AGG - chr5_2:6633068-6633087 Msa0752950:intron 30.0%
!!! TTCAGTTTTTTTAAAGGGGA+CGG - chr5_2:6633074-6633093 Msa0752950:intron 30.0%
AACATTTCGTGTGGTATTTA+AGG + chr5_2:6633164-6633183 None:intergenic 30.0%
TACCACACGAAATGTTAAAA+TGG - chr5_2:6633168-6633187 Msa0752950:intron 30.0%
! GCATAATCCCTTATTTAAAC+AGG - chr5_2:6633369-6633388 Msa0752950:CDS 30.0%
CATACATATGTGAGTTCAAA+AGG - chr5_2:6633411-6633430 Msa0752950:CDS 30.0%
AGTAAAACATGCACATTAGT+AGG + chr5_2:6633445-6633464 None:intergenic 30.0%
TTCATCAAACCCATTTAATC+CGG - chr5_2:6633564-6633583 Msa0752950:intron 30.0%
TGTCACAAACTAACATACAT+AGG - chr5_2:6633587-6633606 Msa0752950:intron 30.0%
!! TGAACTCATTCTCTACTTTT+TGG + chr5_2:6633862-6633881 None:intergenic 30.0%
AAAAGTAGAGAATGAGTTCA+AGG - chr5_2:6633862-6633881 Msa0752950:intron 30.0%
! GATTTTCTTTTGACGTATGA+TGG - chr5_2:6634137-6634156 Msa0752950:intron 30.0%
!!! GTTACTGAAAGTGTTTTCTT+AGG - chr5_2:6634178-6634197 Msa0752950:intron 30.0%
AAAGGCAAAAACTCATGAAA+AGG - chr5_2:6634424-6634443 Msa0752950:CDS 30.0%
! CTATACTTCTATTTTCTCCA+AGG + chr5_2:6634457-6634476 None:intergenic 30.0%
TTCTAATGAAGAAATGACAG+TGG - chr5_2:6634495-6634514 Msa0752950:CDS 30.0%
TGGAATCTGGAAATATTATG+AGG - chr5_2:6634515-6634534 Msa0752950:CDS 30.0%
CAAAATCTTATAGATTGTCC+GGG - chr5_2:6634629-6634648 Msa0752950:CDS 30.0%
AATGATCACAACAACCAAAA+TGG + chr5_2:6634695-6634714 None:intergenic 30.0%
ACTAGAATGGTAGAAAATTC+TGG + chr5_2:6634733-6634752 None:intergenic 30.0%
! TTGGTTGGTTGTTGAAGTTA+AGG + chr5_2:6631005-6631024 None:intergenic 35.0%
TGTTAGAGAAGATGAAGACA+TGG + chr5_2:6631028-6631047 None:intergenic 35.0%
ATTTGAGGGATACTGTGAAT+GGG + chr5_2:6631068-6631087 None:intergenic 35.0%
AATTGGGTGAGAAGATTTGA+GGG + chr5_2:6631082-6631101 None:intergenic 35.0%
AGAGGAAAAGAACAAGAGAA+TGG + chr5_2:6631105-6631124 None:intergenic 35.0%
!! GGATTTATCGATTTCAACTG+AGG + chr5_2:6631205-6631224 None:intergenic 35.0%
! CTTCAAAGGTTCTTCCTTTT+CGG - chr5_2:6631241-6631260 Msa0752950:CDS 35.0%
! TTCAAAGGTTCTTCCTTTTC+GGG - chr5_2:6631242-6631261 Msa0752950:CDS 35.0%
CTCTGTTTGGTAAAAAGTAG+TGG - chr5_2:6631634-6631653 Msa0752950:intron 35.0%
!! TGGTAAAAAGTAGTGGATAG+TGG - chr5_2:6631641-6631660 Msa0752950:intron 35.0%
CCCTAATCACAAACTTACAA+TGG + chr5_2:6631778-6631797 None:intergenic 35.0%
ATGAAGCACAAACATAGACA+CGG + chr5_2:6631965-6631984 None:intergenic 35.0%
GGAAAAATCTGTCCTATATC+AGG + chr5_2:6632341-6632360 None:intergenic 35.0%
GGAAAGACATTGTCATTGTT+CGG - chr5_2:6632733-6632752 Msa0752950:intron 35.0%
! TTCTTCTAATTTAGGGTGCA+TGG - chr5_2:6632822-6632841 Msa0752950:intron 35.0%
!!! TCAGTTTTTTTAAAGGGGAC+GGG - chr5_2:6633075-6633094 Msa0752950:intron 35.0%
!! CACCATTTTAACATTTCGTG+TGG + chr5_2:6633173-6633192 None:intergenic 35.0%
AGGCCCATATTTAAACTGAT+TGG - chr5_2:6633343-6633362 Msa0752950:CDS 35.0%
TTTGTGACACCGGATTAAAT+GGG + chr5_2:6633576-6633595 None:intergenic 35.0%
!! TGTATGTTAGTTTGTGACAC+CGG + chr5_2:6633586-6633605 None:intergenic 35.0%
CTAACATACATAGGATCACA+AGG - chr5_2:6633596-6633615 Msa0752950:intron 35.0%
ACAAGGTCAGCTATTTAACT+GGG - chr5_2:6633613-6633632 Msa0752950:intron 35.0%
TGTATCATGTGTGTATGTTG+AGG + chr5_2:6633682-6633701 None:intergenic 35.0%
CTTCGGAAATGACATATTTG+AGG + chr5_2:6633705-6633724 None:intergenic 35.0%
TCTCACTTCTGAATACTGTT+AGG + chr5_2:6633910-6633929 None:intergenic 35.0%
TATCAGTCAAGTGTGTAACA+GGG - chr5_2:6633938-6633957 Msa0752950:intron 35.0%
ATAAAAGAGGAGTCACTGTT+AGG + chr5_2:6634055-6634074 None:intergenic 35.0%
CTAAACACATGGTAAATGCA+GGG + chr5_2:6634093-6634112 None:intergenic 35.0%
ATGCAACATTGATACTTCAG+AGG - chr5_2:6634321-6634340 Msa0752950:intron 35.0%
CGCTTCTGTGGTAAATATAA+AGG - chr5_2:6634406-6634425 Msa0752950:CDS 35.0%
TAAAACAATGATTAGCAGCC+CGG + chr5_2:6634650-6634669 None:intergenic 35.0%
AAGATGAAGACATGGTTGGT+TGG + chr5_2:6631020-6631039 None:intergenic 40.0%
AGAGAAGATGAAGACATGGT+TGG + chr5_2:6631024-6631043 None:intergenic 40.0%
GATTTGAGGGATACTGTGAA+TGG + chr5_2:6631069-6631088 None:intergenic 40.0%
GAATTGGGTGAGAAGATTTG+AGG + chr5_2:6631083-6631102 None:intergenic 40.0%
GAAGCTGAAACAAACAGTGA+TGG + chr5_2:6631162-6631181 None:intergenic 40.0%
TCACTGTTTGTTTCAGCTTC+AGG - chr5_2:6631162-6631181 Msa0752950:three_prime_UTR 40.0%
! AAGAACCTTTGAAGGAGTAG+CGG + chr5_2:6631235-6631254 None:intergenic 40.0%
CGAAAAGGAAGAACCTTTGA+AGG + chr5_2:6631243-6631262 None:intergenic 40.0%
ATCGATGAAGGTCAAAACCA+TGG + chr5_2:6631272-6631291 None:intergenic 40.0%
!!! TGGTTTTGACCTTCATCGAT+TGG - chr5_2:6631272-6631291 Msa0752950:CDS 40.0%
TTAGGGACTATGACTCTGTT+TGG - chr5_2:6631621-6631640 Msa0752950:intron 40.0%
TCCACAAATAAGGTGTGTTC+CGG - chr5_2:6631841-6631860 Msa0752950:intron 40.0%
GTAATCATATGTGCCAGTGT+AGG + chr5_2:6631886-6631905 None:intergenic 40.0%
AGAGTTGTTGGCAAGATCTT+GGG + chr5_2:6632192-6632211 None:intergenic 40.0%
TAGAGTTGTTGGCAAGATCT+TGG + chr5_2:6632193-6632212 None:intergenic 40.0%
!! TGCGTGGTTGATGCAATTTT+AGG - chr5_2:6632302-6632321 Msa0752950:intron 40.0%
!! GCGTGGTTGATGCAATTTTA+GGG - chr5_2:6632303-6632322 Msa0752950:intron 40.0%
!! CGTGGTTGATGCAATTTTAG+GGG - chr5_2:6632304-6632323 Msa0752950:intron 40.0%
!! GATGCAATTTTAGGGGCTTT+AGG - chr5_2:6632311-6632330 Msa0752950:intron 40.0%
! GCTTTAGGTCTTCCTGATAT+AGG - chr5_2:6632326-6632345 Msa0752950:intron 40.0%
TTCCTGATTCTGATCCTAAG+TGG - chr5_2:6632357-6632376 Msa0752950:intron 40.0%
TTCCACTTAGGATCAGAATC+AGG + chr5_2:6632362-6632381 None:intergenic 40.0%
TGATTCTGATCCTAAGTGGA+AGG - chr5_2:6632361-6632380 Msa0752950:intron 40.0%
GATTCTGATCCTAAGTGGAA+GGG - chr5_2:6632362-6632381 Msa0752950:intron 40.0%
CTTAGAAGAGATTAGCGCTT+TGG - chr5_2:6632934-6632953 Msa0752950:intron 40.0%
ATTAGCGCTTTGGTTAACAG+TGG - chr5_2:6632944-6632963 Msa0752950:intron 40.0%
! TCTATTCGGTTCTAACTGAG+GGG + chr5_2:6633280-6633299 None:intergenic 40.0%
! GTCTATTCGGTTCTAACTGA+GGG + chr5_2:6633281-6633300 None:intergenic 40.0%
CATATGTGAGTTCAAAAGGC+CGG - chr5_2:6633415-6633434 Msa0752950:CDS 40.0%
GTTTGTGACACCGGATTAAA+TGG + chr5_2:6633577-6633596 None:intergenic 40.0%
CACAAGGTCAGCTATTTAAC+TGG - chr5_2:6633612-6633631 Msa0752950:intron 40.0%
GTATGTTGAGGTGAGTACAA+GGG + chr5_2:6633670-6633689 None:intergenic 40.0%
TGTATGTTGAGGTGAGTACA+AGG + chr5_2:6633671-6633690 None:intergenic 40.0%
CTATCAGTCAAGTGTGTAAC+AGG - chr5_2:6633937-6633956 Msa0752950:intron 40.0%
GCTAAACACATGGTAAATGC+AGG + chr5_2:6634094-6634113 None:intergenic 40.0%
CATGAGGCAGGTTATGATAT+TGG - chr5_2:6634290-6634309 Msa0752950:intron 40.0%
!! CATGAAAAGGTTGATAGCCT+TGG - chr5_2:6634437-6634456 Msa0752950:CDS 40.0%
GAAGAAATGACAGTGGAATC+TGG - chr5_2:6634502-6634521 Msa0752950:CDS 40.0%
! TGAAGGGTATGGTGTTTGAG+AGG + chr5_2:6631123-6631142 None:intergenic 45.0%
TCGATTTCAACTGAGGCTGT+GGG + chr5_2:6631198-6631217 None:intergenic 45.0%
! ATCGATTTCAACTGAGGCTG+TGG + chr5_2:6631199-6631218 None:intergenic 45.0%
! TTGAAGGAGTAGCGGAGATT+GGG + chr5_2:6631227-6631246 None:intergenic 45.0%
! TTTGAAGGAGTAGCGGAGAT+TGG + chr5_2:6631228-6631247 None:intergenic 45.0%
AATCTCCGCTACTCCTTCAA+AGG - chr5_2:6631227-6631246 Msa0752950:exon 45.0%
!!! AAGGTTCTTCCTTTTCGGGT+TGG - chr5_2:6631246-6631265 Msa0752950:CDS 45.0%
AACCAGGTTCCAATCGATGA+AGG + chr5_2:6631284-6631303 None:intergenic 45.0%
GCAGATAAGCTAGCTGATAG+TGG - chr5_2:6631694-6631713 Msa0752950:intron 45.0%
ACACGGACACTCCACAAATA+AGG - chr5_2:6631831-6631850 Msa0752950:intron 45.0%
! ACCGGAACACACCTTATTTG+TGG + chr5_2:6631845-6631864 None:intergenic 45.0%
AATAAGGTGTGTTCCGGTGT+CGG - chr5_2:6631847-6631866 Msa0752950:intron 45.0%
ACAAACATAGACACGGACAC+GGG + chr5_2:6631958-6631977 None:intergenic 45.0%
CACAAACATAGACACGGACA+CGG + chr5_2:6631959-6631978 None:intergenic 45.0%
GAATCACAACCCTTCCACTT+AGG + chr5_2:6632374-6632393 None:intergenic 45.0%
GTGGAAGGGTTGTGATTCTT+CGG - chr5_2:6632376-6632395 Msa0752950:intron 45.0%
! GAAGGTATGCCTTGCAATCA+GGG - chr5_2:6632700-6632719 Msa0752950:intron 45.0%
! GGTCTATTCGGTTCTAACTG+AGG + chr5_2:6633282-6633301 None:intergenic 45.0%
AGAACCGAATAGACCTGTAG+AGG - chr5_2:6633287-6633306 Msa0752950:intron 45.0%
AAATATGGGCCTATGCTGAC+TGG + chr5_2:6633335-6633354 None:intergenic 45.0%
ATGCACATTAGTAGGCAGAC+CGG + chr5_2:6633437-6633456 None:intergenic 45.0%
ACAAGGGCTAACGGTTGTTT+GGG + chr5_2:6633654-6633673 None:intergenic 45.0%
TACAAGGGCTAACGGTTGTT+TGG + chr5_2:6633655-6633674 None:intergenic 45.0%
ACAGGTCAGACTTATGCATG+AGG - chr5_2:6634274-6634293 Msa0752950:intron 45.0%
TCCAAGCAGTGCAGATAAGT+TGG + chr5_2:6634381-6634400 None:intergenic 45.0%
! TGAAGGAGTAGCGGAGATTG+GGG + chr5_2:6631226-6631245 None:intergenic 50.0%
AAACCATGGCCAACCCGAAA+AGG + chr5_2:6631258-6631277 None:intergenic 50.0%
! GACCTTCATCGATTGGAACC+TGG - chr5_2:6631279-6631298 Msa0752950:CDS 50.0%
ACCTCATGATAGAGGTTGCG+AGG - chr5_2:6631332-6631351 Msa0752950:CDS 50.0%
GTGATTAGGGGCCGTTTGTT+TGG - chr5_2:6631788-6631807 Msa0752950:intron 50.0%
TAGGGGCCGTTTGTTTGGAT+TGG - chr5_2:6631793-6631812 Msa0752950:intron 50.0%
GATCTTGGGCCCATTTGGAT+TGG + chr5_2:6632178-6632197 None:intergenic 50.0%
! GGAAGGTATGCCTTGCAATC+AGG - chr5_2:6632699-6632718 Msa0752950:intron 50.0%
TTCCACTGTCCCTGATTGCA+AGG + chr5_2:6632712-6632731 None:intergenic 50.0%
TGCAATCAGGGACAGTGGAA+TGG - chr5_2:6632712-6632731 Msa0752950:intron 50.0%
ACCGAATAGACCTGTAGAGG+CGG - chr5_2:6633290-6633309 Msa0752950:intron 50.0%
GAGGTGAGTACAAGGGCTAA+CGG + chr5_2:6633663-6633682 None:intergenic 50.0%
GTCAGACTTATGCATGAGGC+AGG - chr5_2:6634278-6634297 Msa0752950:intron 50.0%
TCCTTGTGCGGGCTTAGTTT+CGG + chr5_2:6634347-6634366 None:intergenic 50.0%
! CCTTGATAGCATCCTTGTGC+GGG + chr5_2:6634358-6634377 None:intergenic 50.0%
! GCCTTGATAGCATCCTTGTG+CGG + chr5_2:6634359-6634378 None:intergenic 50.0%
GCCAACTTATCTGCACTGCT+TGG - chr5_2:6634377-6634396 Msa0752950:CDS 50.0%
!!! CTTCCTTTTCGGGTTGGCCA+TGG - chr5_2:6631252-6631271 Msa0752950:CDS 55.0%
GCCTCGCAACCTCTATCATG+AGG + chr5_2:6631336-6631355 None:intergenic 55.0%
GGTTGCGAGGCTCATTCTGA+TGG - chr5_2:6631345-6631364 Msa0752950:CDS 55.0%
GGCAAGATCTTGGGCCCATT+TGG + chr5_2:6632183-6632202 None:intergenic 55.0%
GGATGTTCTGCTTCACTGCG+TGG - chr5_2:6632286-6632305 Msa0752950:intron 55.0%
TGCCTTGCAATCAGGGACAG+TGG - chr5_2:6632707-6632726 Msa0752950:intron 55.0%
TAAAGGGGACGGGAGAAGAG+AGG - chr5_2:6633085-6633104 Msa0752950:intron 55.0%
CCCGCCTCTACAGGTCTATT+CGG + chr5_2:6633294-6633313 None:intergenic 55.0%
CCGAATAGACCTGTAGAGGC+GGG - chr5_2:6633291-6633310 Msa0752950:intron 55.0%
GTATGCATACCCGCCTCTAC+AGG + chr5_2:6633303-6633322 None:intergenic 55.0%
CCCGCACAAGGATGCTATCA+AGG - chr5_2:6634355-6634374 Msa0752950:intron 55.0%
GCTTGGAGTTGACGCTTCTG+TGG - chr5_2:6634394-6634413 Msa0752950:CDS 55.0%
ACACGCTTCGCGTCCTACAC+TGG - chr5_2:6631870-6631889 Msa0752950:intron 60.0%
! CTATGCTGACTGGTGCGAGC+TGG + chr5_2:6633325-6633344 None:intergenic 60.0%
CAGCTCGCACCAGTCAGCAT+AGG - chr5_2:6633323-6633342 Msa0752950:intron 60.0%
GCCGAAACTAAGCCCGCACA+AGG - chr5_2:6634343-6634362 Msa0752950:intron 60.0%
ACGCGAAGCGTGTCCGACAC+CGG + chr5_2:6631863-6631882 None:intergenic 65.0%
GGGGACGGGAGAAGAGAGGA+AGG - chr5_2:6633089-6633108 Msa0752950:intron 65.0%
Chromosome Type Strat End Strand Name
chr5_2 gene 6630968 6634775 6630968 ID=Msa0752950;Name=Msa0752950
chr5_2 mRNA 6630968 6634775 6630968 ID=Msa0752950-mRNA-1;Parent=Msa0752950;Name=Msa0752950-mRNA-1;_AED=0.02;_eAED=0.02;_QI=59|1|1|1|1|1|3|264|234
chr5_2 exon 6630968 6631465 6630968 ID=Msa0752950-mRNA-1:exon:2819;Parent=Msa0752950-mRNA-1
chr5_2 exon 6633328 6633458 6633328 ID=Msa0752950-mRNA-1:exon:2818;Parent=Msa0752950-mRNA-1
chr5_2 exon 6634377 6634775 6634377 ID=Msa0752950-mRNA-1:exon:2817;Parent=Msa0752950-mRNA-1
chr5_2 five_prime_UTR 6634717 6634775 6634717 ID=Msa0752950-mRNA-1:five_prime_utr;Parent=Msa0752950-mRNA-1
chr5_2 CDS 6634377 6634716 6634377 ID=Msa0752950-mRNA-1:cds;Parent=Msa0752950-mRNA-1
chr5_2 CDS 6633328 6633458 6633328 ID=Msa0752950-mRNA-1:cds;Parent=Msa0752950-mRNA-1
chr5_2 CDS 6631232 6631465 6631232 ID=Msa0752950-mRNA-1:cds;Parent=Msa0752950-mRNA-1
chr5_2 three_prime_UTR 6630968 6631231 6630968 ID=Msa0752950-mRNA-1:three_prime_utr;Parent=Msa0752950-mRNA-1
Gene Sequence

>Msa0752950

ATGTCTTCATCTTCTCTAACAGCATCTTCTTACTCTTTCCCATTCACAGTATCCCTCAAATCTTCTCACCCAATTCCATTCTCTTGTTCTTTTCCTCTCAAACACCATACCCTTCATAATATCAAATCATCACCATCACTGTTTGTTTCAGCTTCAGGAGCTGCAACACCCACAGCCTCAGTTGAAATCGATAAATCCCCAATCTCCGCTACTCCTTCAAAGGTTCTTCCTTTTCGGGTTGGCCATGGTTTTGACCTTCATCGATTGGAACCTGGTTATCCTTTAATTATTGGTGGAATTAATATACCTCATGATAGAGGTTGCGAGGCTCATTCTGATGGGGATGTTCTGCTTCACTGCGTGGTTGATGCAATTTTAGGGGCTTTAGGTCTTCCTGATATAGGACAGATTTTTCCTGATTCTGATCCTAAGTGGAAGGGTTGTGATTCTTCGGTGTTTGTCCATGAATCTGTCAGACTTATGCATGAGGCAGGTTATGATATTGGAAATTTAGATGCAACATTGATACTTCAGAGGCCGAAACTAAGCCCGCACAAGGATGCTATCAAGGCCAACTTATCTGCACTGCTTGGAGTTGACGCTTCTGTGGTAAATATAAAGGCAAAAACTCATGAAAAGGTTGATAGCCTTGGAGAAAATAGAAGTATAGCAGCTCACACAGTTGTTCTTCTAATGAAGAAATGA

Protein sequence

>Msa0752950

MSSSSLTASSYSFPFTVSLKSSHPIPFSCSFPLKHHTLHNIKSSPSLFVSASGAATPTASVEIDKSPISATPSKVLPFRVGHGFDLHRLEPGYPLIIGGINIPHDRGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGCDSSVFVHESVRLMHEAGYDIGNLDATLILQRPKLSPHKDAIKANLSALLGVDASVVNIKAKTHEKVDSLGENRSIAAHTVVLLMKK*