AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1381830


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1381830 MtrunA17_Chr5g0395851 97.482 278 2 2 1 278 1 273 0.0 541
Msa1381830 MtrunA17_Chr3g0131571 47.619 63 24 2 183 243 56 111 8.74e-11 59.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1381830 AT5G17170.1 77.500 240 48 4 39 278 38 271 3.57e-127 362
Msa1381830 AT5G17170.2 73.750 160 40 2 39 198 38 195 2.17e-74 227
Msa1381830 AT5G51010.1 34.545 110 42 4 184 275 52 149 7.39e-11 59.7

Find 114 sgRNAs with CRISPR-Local

Find 216 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTGGACTTGTGGCTGGTTT+AGG 0.164794 tig0020453:+129436 Msa1381830:CDS
ACCTGGTCATCAAAAGATTT+TGG 0.172641 tig0020453:-128966 None:intergenic
CCTCCAATTGGAGTTATTAT+TGG 0.179719 tig0020453:+129418 Msa1381830:CDS
TTGGACTTGTGGCTGGTTTA+GGG 0.187713 tig0020453:+129437 Msa1381830:CDS
CTTCTTTGGTGCTTGACATT+GGG 0.228557 tig0020453:-129341 None:intergenic
GAAGCCAAAAGGGGTGTTTC+AGG 0.237048 tig0020453:+127376 Msa1381830:CDS
CGAGGAGGAGCAGGACGTTT+TGG 0.239182 tig0020453:-128725 None:intergenic
CAACACCGCCACCATTCTTT+TGG 0.291572 tig0020453:-127531 None:intergenic
TCTAACACTCACTCTTCTAT+TGG 0.292576 tig0020453:-129793 None:intergenic
CTATATACTAGCAGTTTCTT+TGG 0.295714 tig0020453:+127877 Msa1381830:CDS
AACAGATCACACAATTAAAA+AGG 0.303925 tig0020453:+126890 Msa1381830:five_prime_UTR
GTTTCTTTGGAGATGAATTA+TGG 0.304420 tig0020453:+127890 Msa1381830:CDS
TACTCAGCAAACCTCTTCTT+TGG 0.321989 tig0020453:-129355 None:intergenic
TTCAAAAGAATCAGTTGTTT+TGG 0.328968 tig0020453:+126961 Msa1381830:five_prime_UTR
GGATCCTGAAACACCCCTTT+TGG 0.340292 tig0020453:-127380 None:intergenic
GTCCTGCTCCTCCTCGCTTC+GGG 0.350568 tig0020453:+128732 Msa1381830:CDS
CGTCCTGCTCCTCCTCGCTT+CGG 0.368149 tig0020453:+128731 Msa1381830:CDS
TATCTTCTTTAGGCTGTTGA+AGG 0.389713 tig0020453:+127808 Msa1381830:intron
GGTGGAGGGTTGCCTCCAAT+TGG 0.394086 tig0020453:+129406 Msa1381830:CDS
AGCTTAGTTGAGTTGGTGTT+AGG 0.397535 tig0020453:-126858 None:intergenic
GTGCTGATGTAGATGTTAAA+AGG 0.409204 tig0020453:+128699 Msa1381830:CDS
CTCACTTCATGAAGCCAAAA+GGG 0.416237 tig0020453:+127366 Msa1381830:CDS
TCTTCTTTGGTGCTTGACAT+TGG 0.416965 tig0020453:-129342 None:intergenic
CTAACACTCACTCTTCTATT+GGG 0.422967 tig0020453:-129792 None:intergenic
ATTCCAAGGTTGGACAACTT+TGG 0.424659 tig0020453:-129536 None:intergenic
GTGGCTGGTTTAGGGGCTGT+TGG 0.432164 tig0020453:+129445 Msa1381830:CDS
GAATGTTTCTAGCATTTCTC+AGG 0.435034 tig0020453:+129832 Msa1381830:three_prime_UTR
ACCATGTCAGCTATGGTTGC+AGG 0.435247 tig0020453:+127015 Msa1381830:exon
AGTCCAATAATAACTCCAAT+TGG 0.436833 tig0020453:-129421 None:intergenic
GCAAGAGCAGGGTTAAAGTC+AGG 0.440054 tig0020453:+127844 Msa1381830:CDS
GTTATTATTGGACTTGTGGC+TGG 0.444557 tig0020453:+129430 Msa1381830:CDS
CTCCCGAAGCGAGGAGGAGC+AGG 0.447605 tig0020453:-128734 None:intergenic
CTGTCTACTTTGTTGTCAGC+AGG 0.450428 tig0020453:+127965 Msa1381830:CDS
GAGATCACTGCAAGAACTGC+TGG 0.452185 tig0020453:+127454 Msa1381830:CDS
CACAAAAGAACCTCACCATC+TGG 0.455682 tig0020453:-126766 None:intergenic
GGAGGGAATGCAGCAAGAGC+AGG 0.457313 tig0020453:+127832 Msa1381830:CDS
GTGGGACTCACCACTTTATG+TGG 0.458423 tig0020453:-129759 None:intergenic
CTTTAGGCTGTTGAAGGTGG+AGG 0.458505 tig0020453:+127814 Msa1381830:intron
TTCTTTGGTGCTTGACATTG+GGG 0.463539 tig0020453:-129340 None:intergenic
CTTCTTTAGGCTGTTGAAGG+TGG 0.466334 tig0020453:+127811 Msa1381830:intron
ATTGCATATGTGCAAATTGA+AGG 0.466677 tig0020453:+129580 Msa1381830:three_prime_UTR
TCTCACTTCATGAAGCCAAA+AGG 0.467074 tig0020453:+127365 Msa1381830:CDS
GACACTCACTCCTCCATGTC+AGG 0.476168 tig0020453:+127107 Msa1381830:CDS
AAGGCAAATGTGAGTAGCTC+TGG 0.479447 tig0020453:-128919 None:intergenic
AAGCCACTTGGTCTCACCTT+AGG 0.480037 tig0020453:+127508 Msa1381830:CDS
GTTAACACAGGAAGAGCTAT+TGG 0.480695 tig0020453:+129382 Msa1381830:CDS
AATTTGCACATATGCAATCA+AGG 0.485372 tig0020453:-129575 None:intergenic
ACAACAAAGTAGACAGAGTC+AGG 0.485537 tig0020453:-127958 None:intergenic
AGCCACAAGCTTAGTTGAGT+TGG 0.485667 tig0020453:-126865 None:intergenic
TGAGATACAAATTCCAAGGT+TGG 0.488440 tig0020453:-129546 None:intergenic
CTCAAGTCTCTTTCTAGCAA+TGG 0.494877 tig0020453:-127434 None:intergenic
AAAATGAATCCCACATAAAG+TGG 0.495336 tig0020453:+129749 Msa1381830:three_prime_UTR
ATGGTTCCTTGTGGAAAGAA+AGG 0.502076 tig0020453:-126997 None:intergenic
AAAATTGACTGAGACTCAAA+AGG 0.506048 tig0020453:+128757 Msa1381830:CDS
GGTGTTTCAGGATCCTTCCT+AGG 0.507560 tig0020453:+127388 Msa1381830:CDS
AACTGCTAGTATATAGAACT+TGG 0.513842 tig0020453:-127870 None:intergenic
TGGTGGCGGTGTTGTTATAA+CGG 0.514700 tig0020453:+127540 Msa1381830:CDS
GGAAGAGCTATTGGTGGTGG+AGG 0.514930 tig0020453:+129391 Msa1381830:CDS
ATTTCACTCGATAAGAGAAT+AGG 0.516720 tig0020453:-129712 None:intergenic
TGGACTTGTGGCTGGTTTAG+GGG 0.521175 tig0020453:+129438 Msa1381830:CDS
ACTCCAAAGTTGTCCAACCT+TGG 0.529497 tig0020453:+129533 Msa1381830:three_prime_UTR
GTGAATCCAAGCTTATCTGC+TGG 0.535393 tig0020453:-127913 None:intergenic
TTTAGGCTGTTGAAGGTGGA+GGG 0.538963 tig0020453:+127815 Msa1381830:intron
TTATGGCCAGCAGATAAGCT+TGG 0.539708 tig0020453:+127907 Msa1381830:CDS
AAAACTAACTGTGATAATTG+AGG 0.540317 tig0020453:+129653 Msa1381830:three_prime_UTR
CACTCCTCCATGTCAGGTAC+AGG 0.542691 tig0020453:+127113 Msa1381830:CDS
CTGCAGAAAACATCTTTGCT+AGG 0.543050 tig0020453:+127340 Msa1381830:intron
CCAATAATAACTCCAATTGG+AGG 0.544692 tig0020453:-129418 None:intergenic
ACAGGAAGAGCTATTGGTGG+TGG 0.551544 tig0020453:+129388 Msa1381830:CDS
TTTCTGAGATACAAATTCCA+AGG 0.554244 tig0020453:-129550 None:intergenic
TTCCTTCCTTTCTTTCCACA+AGG 0.557681 tig0020453:+126991 Msa1381830:five_prime_UTR
ACAAGGAACCATGTCAGCTA+TGG 0.558535 tig0020453:+127008 Msa1381830:exon
TGGAGTTATTATTGGACTTG+TGG 0.561374 tig0020453:+129426 Msa1381830:CDS
TTCCTTGTGGAAAGAAAGGA+AGG 0.563057 tig0020453:-126993 None:intergenic
TTCAAAGACAATTGAAGCTG+AGG 0.563353 tig0020453:+127480 Msa1381830:CDS
TGGGGACAACTGTATGTGTC+CGG 0.563574 tig0020453:-129322 None:intergenic
CCTTGTGGTGAAAGTGGCAG+AGG 0.564639 tig0020453:-127043 None:intergenic
CGGCTTGAGGCCAGATGGTG+AGG 0.565975 tig0020453:+126756 Msa1381830:five_prime_UTR
CAAGAGCAGGGTTAAAGTCA+GGG 0.567341 tig0020453:+127845 Msa1381830:CDS
CTCACCTTAGGCCAAAAGAA+TGG 0.568349 tig0020453:+127520 Msa1381830:CDS
GCTGAGGTTGACAAGCCACT+TGG 0.570324 tig0020453:+127496 Msa1381830:CDS
AACGGTACCTGTACCTGACA+TGG 0.581994 tig0020453:-127120 None:intergenic
GTTACTCCTTGTGGTGAAAG+TGG 0.585891 tig0020453:-127049 None:intergenic
TTCCTAGGTGACAACAAAAG+TGG 0.586607 tig0020453:+127403 Msa1381830:CDS
ACCTGCAACCATAGCTGACA+TGG 0.586903 tig0020453:-127016 None:intergenic
AATGTCAAGCACCAAAGAAG+AGG 0.589836 tig0020453:+129344 Msa1381830:CDS
GATGGAGTGGTTACTCCTTG+TGG 0.593369 tig0020453:-127058 None:intergenic
CACCAACTCAACTAAGCTTG+TGG 0.596840 tig0020453:+126863 Msa1381830:five_prime_UTR
AAGTCTCTTTCTAGCAATGG+AGG 0.597338 tig0020453:-127431 None:intergenic
AAGAGCAGGGTTAAAGTCAG+GGG 0.598127 tig0020453:+127846 Msa1381830:CDS
ATGTGTATAAAGCATGCAAG+AGG 0.599952 tig0020453:-126934 None:intergenic
TGGGACTCACCACTTTATGT+GGG 0.604299 tig0020453:-129758 None:intergenic
TGGCCTAAGGTGAGACCAAG+TGG 0.607786 tig0020453:-127511 None:intergenic
TGTGGTGAAAGTGGCAGAGG+AGG 0.609801 tig0020453:-127040 None:intergenic
AGTATATGTATCCACAGTCA+AGG 0.610259 tig0020453:-128938 None:intergenic
ACATGGAGGAGTGAGTGTCT+TGG 0.612341 tig0020453:-127103 None:intergenic
GAGGGAATGCAGCAAGAGCA+GGG 0.612440 tig0020453:+127833 Msa1381830:CDS
AAGGTTGGACAACTTTGGAG+TGG 0.618969 tig0020453:-129531 None:intergenic
GAAGAGCTATTGGTGGTGGA+GGG 0.622209 tig0020453:+129392 Msa1381830:CDS
GCTGAGTATGATGTTAACAC+AGG 0.623493 tig0020453:+129370 Msa1381830:CDS
TTAGGCCAAAAGAATGGTGG+CGG 0.624691 tig0020453:+127526 Msa1381830:CDS
ACTCACATTTGCCTTGACTG+TGG 0.627650 tig0020453:+128927 Msa1381830:CDS
ATAGCTGACATGGTTCCTTG+TGG 0.631401 tig0020453:-127006 None:intergenic
CCTCTGCCACTTTCACCACA+AGG 0.635741 tig0020453:+127043 Msa1381830:CDS
TCACTTCATGAAGCCAAAAG+GGG 0.637786 tig0020453:+127367 Msa1381830:CDS
TAGAACGGCTTGAGGCCAGA+TGG 0.640150 tig0020453:+126751 None:intergenic
GGAGGAGTGAGTGTCTTGGA+AGG 0.640900 tig0020453:-127099 None:intergenic
AACACAGGAAGAGCTATTGG+TGG 0.646702 tig0020453:+129385 Msa1381830:CDS
ACCTTAGGCCAAAAGAATGG+TGG 0.660294 tig0020453:+127523 Msa1381830:CDS
CTATTGGGTGAAAACCATGT+GGG 0.660941 tig0020453:-129777 None:intergenic
ATACAACATAGAACGGCTTG+AGG 0.666102 tig0020453:+126743 None:intergenic
TCTATTGGGTGAAAACCATG+TGG 0.671909 tig0020453:-129778 None:intergenic
ATAAAGTGGTGAGTCCCACA+TGG 0.673249 tig0020453:+129763 Msa1381830:three_prime_UTR
GGTACCTGTACCTGACATGG+AGG 0.738019 tig0020453:-127117 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TGTAAAAATTAAAAAAAGTA+GGG + tig0020453:128182-128201 Msa1381830:intron 10.0%
!! AAATTGAATAAAATTTATGT+AGG + tig0020453:128208-128227 Msa1381830:intron 10.0%
!! AATTGAATAAAATTTATGTA+GGG + tig0020453:128209-128228 Msa1381830:intron 10.0%
!! TTAAAAAAAATATACATGTT+GGG - tig0020453:129090-129109 None:intergenic 10.0%
!! TTTAAAAAAAATATACATGT+TGG - tig0020453:129091-129110 None:intergenic 10.0%
!!! AAGAAAGATAATATGTTTTT+GGG - tig0020453:126807-126826 None:intergenic 15.0%
!!! AAAGAAAGATAATATGTTTT+TGG - tig0020453:126808-126827 None:intergenic 15.0%
!!! GACTAAATTTGAAATTTTAT+TGG - tig0020453:128095-128114 None:intergenic 15.0%
!! CTGTAAAAATTAAAAAAAGT+AGG + tig0020453:128181-128200 Msa1381830:intron 15.0%
!! AATAAGATATAGAAAATTGA+TGG + tig0020453:128383-128402 Msa1381830:intron 15.0%
!!! AAACTTTTATATATATGTGA+TGG - tig0020453:128996-129015 None:intergenic 15.0%
!!! AATGACAACATTGATTTAAT+GGG - tig0020453:127585-127604 None:intergenic 20.0%
!!! TTGTTCAATTTGATTTCATA+AGG + tig0020453:128127-128146 Msa1381830:intron 20.0%
!!! TTTTGTAGCAATAACAATAA+GGG - tig0020453:128291-128310 None:intergenic 20.0%
!!! ATTTTGTAGCAATAACAATA+AGG - tig0020453:128292-128311 None:intergenic 20.0%
!! AACCATTCAATTATGTAAAA+TGG - tig0020453:128876-128895 None:intergenic 20.0%
!! ATATAAAAGATAAAGTCTCT+TGG - tig0020453:129034-129053 None:intergenic 20.0%
!!! AGATGATTTTAGATTAAAGT+TGG + tig0020453:129247-129266 Msa1381830:intron 20.0%
!!! AATTATCACAGTTAGTTTTT+AGG - tig0020453:129652-129671 None:intergenic 20.0%
!!! AAAGATAATATGTTTTTGGG+TGG - tig0020453:126804-126823 None:intergenic 25.0%
! AACAGATCACACAATTAAAA+AGG + tig0020453:126890-126909 Msa1381830:five_prime_UTR 25.0%
!! TTCAAAAGAATCAGTTGTTT+TGG + tig0020453:126961-126980 Msa1381830:five_prime_UTR 25.0%
! TAATCATGCAAAGAAAAGAA+CGG - tig0020453:127141-127160 None:intergenic 25.0%
!! TTTTCTTTGCATGATTACTT+CGG + tig0020453:127144-127163 Msa1381830:intron 25.0%
! ATCATTTGAATTCAACTAGT+TGG + tig0020453:127256-127275 Msa1381830:intron 25.0%
!!! CAATGACAACATTGATTTAA+TGG - tig0020453:127586-127605 None:intergenic 25.0%
! CATTAAATCAATGTTGTCAT+TGG + tig0020453:127584-127603 Msa1381830:intron 25.0%
! ATTTCACCACTATATATACA+AGG - tig0020453:128347-128366 None:intergenic 25.0%
! TTGTATATATAGTGGTGAAA+TGG + tig0020453:128346-128365 Msa1381830:intron 25.0%
! TGTATATATAGTGGTGAAAT+GGG + tig0020453:128347-128366 Msa1381830:intron 25.0%
! TGGTAAGACTAAAATAAGTT+CGG + tig0020453:128403-128422 Msa1381830:intron 25.0%
! AAGTAACTGATAAACAGAAT+AGG - tig0020453:128622-128641 None:intergenic 25.0%
! ACAAAAACATGAAAATAGTC+AGG - tig0020453:128667-128686 None:intergenic 25.0%
!!! TTCATGTTTTTGTTATGAAG+AGG + tig0020453:128674-128693 Msa1381830:intron 25.0%
! GATGACAAATAAATACTACT+AGG - tig0020453:128839-128858 None:intergenic 25.0%
!! GTCCATTTTACATAATTGAA+TGG + tig0020453:128871-128890 Msa1381830:intron 25.0%
! TAAAAATGTCTGACATGTAT+TGG + tig0020453:129107-129126 Msa1381830:intron 25.0%
! AAAACTAACTGTGATAATTG+AGG + tig0020453:129653-129672 Msa1381830:three_prime_UTR 25.0%
!! ATTCATTTTCAATGTGTGTT+AGG - tig0020453:129738-129757 None:intergenic 25.0%
AATTCAACTAGTTGGTTAGT+TGG + tig0020453:127264-127283 Msa1381830:intron 30.0%
ATCAACCTGAAATGAAATGT+CGG - tig0020453:127627-127646 None:intergenic 30.0%
TGAAATGTAACCATATGTGT+CGG - tig0020453:127675-127694 None:intergenic 30.0%
AGATGCGTATTATCTTCTTT+AGG + tig0020453:127798-127817 Msa1381830:intron 30.0%
AACTGCTAGTATATAGAACT+TGG - tig0020453:127873-127892 None:intergenic 30.0%
CTATATACTAGCAGTTTCTT+TGG + tig0020453:127877-127896 Msa1381830:CDS 30.0%
! GTTTCTTTGGAGATGAATTA+TGG + tig0020453:127890-127909 Msa1381830:CDS 30.0%
GAACAAAGTTTAGTAGCAAA+AGG - tig0020453:128001-128020 None:intergenic 30.0%
AATGGATGCAATTAAGGAAA+TGG - tig0020453:128023-128042 None:intergenic 30.0%
!!! TGACATAGGTTAGTTTTTGT+TGG + tig0020453:128050-128069 Msa1381830:intron 30.0%
!!! GACATAGGTTAGTTTTTGTT+GGG + tig0020453:128051-128070 Msa1381830:intron 30.0%
!!! TGAAAAGGTCGTAGTTTTAT+AGG + tig0020453:128239-128258 Msa1381830:intron 30.0%
!!! GAAAAGGTCGTAGTTTTATA+GGG + tig0020453:128240-128259 Msa1381830:intron 30.0%
ACACTACCTTGTATATATAG+TGG + tig0020453:128338-128357 Msa1381830:intron 30.0%
!!! TTTTTTCTCTCTCTTTCACA+AGG - tig0020453:128483-128502 None:intergenic 30.0%
!! ATGTTTTTGTTATGAAGAGG+TGG + tig0020453:128677-128696 Msa1381830:intron 30.0%
AAAATTGACTGAGACTCAAA+AGG + tig0020453:128757-128776 Msa1381830:CDS 30.0%
! GCAAGAATCGTTATTCATTT+TGG + tig0020453:128779-128798 Msa1381830:intron 30.0%
!! GTCTCTTGGCAATTATTTTT+AGG - tig0020453:129020-129039 None:intergenic 30.0%
AAAGTTGGATTATCAACATC+TGG + tig0020453:129262-129281 Msa1381830:intron 30.0%
ATTATTTATGTCATTGCAGC+CGG + tig0020453:129303-129322 Msa1381830:intron 30.0%
AGTCCAATAATAACTCCAAT+TGG - tig0020453:129424-129443 None:intergenic 30.0%
!! TTTCTGAGATACAAATTCCA+AGG - tig0020453:129553-129572 None:intergenic 30.0%
AATTTGCACATATGCAATCA+AGG - tig0020453:129578-129597 None:intergenic 30.0%
ATTGCATATGTGCAAATTGA+AGG + tig0020453:129580-129599 Msa1381830:three_prime_UTR 30.0%
ATTTCACTCGATAAGAGAAT+AGG - tig0020453:129715-129734 None:intergenic 30.0%
AAAATGAATCCCACATAAAG+TGG + tig0020453:129749-129768 Msa1381830:three_prime_UTR 30.0%
!!! CATGCAAGAGGAGTTTTTTT+GGG - tig0020453:126925-126944 None:intergenic 35.0%
ATGTGTATAAAGCATGCAAG+AGG - tig0020453:126937-126956 None:intergenic 35.0%
!! TCTGATGTGAGTGTTTTTGA+TGG - tig0020453:127079-127098 None:intergenic 35.0%
TTCAAAGACAATTGAAGCTG+AGG + tig0020453:127480-127499 Msa1381830:CDS 35.0%
!! GACATTTCATTTCAGGTTGA+TGG + tig0020453:127626-127645 Msa1381830:intron 35.0%
TATCTTCTTTAGGCTGTTGA+AGG + tig0020453:127808-127827 Msa1381830:intron 35.0%
CAACAGAATGGATGCAATTA+AGG - tig0020453:128029-128048 None:intergenic 35.0%
ATTTCATAAGGACTAAACGC+AGG + tig0020453:128139-128158 Msa1381830:intron 35.0%
ATGTAGGGACTAAACTGAAA+AGG + tig0020453:128224-128243 Msa1381830:intron 35.0%
TATACAAGGTAGTGTTGCAA+GGG - tig0020453:128333-128352 None:intergenic 35.0%
ATATACAAGGTAGTGTTGCA+AGG - tig0020453:128334-128353 None:intergenic 35.0%
! TGACATAGAATTGGTGACAT+TGG + tig0020453:128438-128457 Msa1381830:intron 35.0%
GTCAATCACAATGTTACAAG+TGG - tig0020453:128509-128528 None:intergenic 35.0%
! TGACATAGAATTGGTGACAT+TGG - tig0020453:128438-128457 None:intergenic 35.0%
GATTGCATACTGAACTTACT+GGG - tig0020453:128563-128582 None:intergenic 35.0%
AGATTGCATACTGAACTTAC+TGG - tig0020453:128564-128583 None:intergenic 35.0%
! TGTGTATGAAGAGTATACTG+TGG + tig0020453:128594-128613 Msa1381830:intron 35.0%
! GTGCTGATGTAGATGTTAAA+AGG + tig0020453:128699-128718 Msa1381830:CDS 35.0%
AGTATATGTATCCACAGTCA+AGG - tig0020453:128941-128960 None:intergenic 35.0%
!! ACCAAAATCTTTTGATGACC+AGG + tig0020453:128965-128984 Msa1381830:CDS 35.0%
! ACCTGGTCATCAAAAGATTT+TGG - tig0020453:128969-128988 None:intergenic 35.0%
!! ATATATGTGATGGACTTACC+TGG - tig0020453:128986-129005 None:intergenic 35.0%
CCAATAATAACTCCAATTGG+AGG - tig0020453:129421-129440 None:intergenic 35.0%
CCTCCAATTGGAGTTATTAT+TGG + tig0020453:129418-129437 Msa1381830:CDS 35.0%
TGGAGTTATTATTGGACTTG+TGG + tig0020453:129426-129445 Msa1381830:CDS 35.0%
!! GTTGGAGCTTTACTTGTTTT+TGG + tig0020453:129463-129482 Msa1381830:CDS 35.0%
TGAGATACAAATTCCAAGGT+TGG - tig0020453:129549-129568 None:intergenic 35.0%
CTAACACTCACTCTTCTATT+GGG - tig0020453:129795-129814 None:intergenic 35.0%
TCTAACACTCACTCTTCTAT+TGG - tig0020453:129796-129815 None:intergenic 35.0%
!! AGCTTAGTTGAGTTGGTGTT+AGG - tig0020453:126861-126880 None:intergenic 40.0%
!!! GCATGCAAGAGGAGTTTTTT+TGG - tig0020453:126926-126945 None:intergenic 40.0%
TTCCTTCCTTTCTTTCCACA+AGG + tig0020453:126991-127010 Msa1381830:five_prime_UTR 40.0%
TTCCTTGTGGAAAGAAAGGA+AGG - tig0020453:126996-127015 None:intergenic 40.0%
ATGGTTCCTTGTGGAAAGAA+AGG - tig0020453:127000-127019 None:intergenic 40.0%
!! TGTGAGTGTTTTTGATGGAG+TGG - tig0020453:127074-127093 None:intergenic 40.0%
CTTTGCATGATTACTTCGGT+CGG + tig0020453:127148-127167 Msa1381830:intron 40.0%
CTGCAGAAAACATCTTTGCT+AGG + tig0020453:127340-127359 Msa1381830:intron 40.0%
!!! TTTTGGCTTCATGAAGTGAG+AGG - tig0020453:127366-127385 None:intergenic 40.0%
TCTCACTTCATGAAGCCAAA+AGG + tig0020453:127365-127384 Msa1381830:CDS 40.0%
CTCACTTCATGAAGCCAAAA+GGG + tig0020453:127366-127385 Msa1381830:CDS 40.0%
TCACTTCATGAAGCCAAAAG+GGG + tig0020453:127367-127386 Msa1381830:CDS 40.0%
!! ACTTTTGTTGTCACCTAGGA+AGG - tig0020453:127404-127423 None:intergenic 40.0%
TTCCTAGGTGACAACAAAAG+TGG + tig0020453:127403-127422 Msa1381830:CDS 40.0%
!! AACCACTTTTGTTGTCACCT+AGG - tig0020453:127408-127427 None:intergenic 40.0%
! AAGTCTCTTTCTAGCAATGG+AGG - tig0020453:127434-127453 None:intergenic 40.0%
! CTCAAGTCTCTTTCTAGCAA+TGG - tig0020453:127437-127456 None:intergenic 40.0%
!! TTTCAGGTTGATGGCATGTT+TGG + tig0020453:127635-127654 Msa1381830:intron 40.0%
!! TCGGTGCTTTCTGGTTTAAA+GGG + tig0020453:127753-127772 Msa1381830:intron 40.0%
ACAACAAAGTAGACAGAGTC+AGG - tig0020453:127961-127980 None:intergenic 40.0%
ATCCATTCTGTTGCTGACAT+AGG + tig0020453:128036-128055 Msa1381830:intron 40.0%
AACCTATGTCAGCAACAGAA+TGG - tig0020453:128041-128060 None:intergenic 40.0%
ATACAAGGTAGTGTTGCAAG+GGG - tig0020453:128332-128351 None:intergenic 40.0%
GCACTTGAGTGACATAGAAT+TGG + tig0020453:128429-128448 Msa1381830:intron 40.0%
AAGGATCGTGACATTGTGAT+TGG - tig0020453:128464-128483 None:intergenic 40.0%
! ATTGGTGACATTGGTGACAT+TGG - tig0020453:128531-128550 None:intergenic 40.0%
CTTACTGGGTGACATAGAAT+TGG - tig0020453:128549-128568 None:intergenic 40.0%
AATAACCAAGTGTACACTGC+AGG + tig0020453:128896-128915 Msa1381830:intron 40.0%
! CATCTGATTGAAAGCATGTC+TGG + tig0020453:129062-129081 Msa1381830:intron 40.0%
! TGTCTGACATGTATTGGTGT+CGG + tig0020453:129113-129132 Msa1381830:intron 40.0%
TTGAATGTAACCACGTTCGT+TGG - tig0020453:129153-129172 None:intergenic 40.0%
ATTTCTACATGTGTCGTACC+TGG + tig0020453:129192-129211 Msa1381830:intron 40.0%
!! TTCTTTGGTGCTTGACATTG+GGG - tig0020453:129343-129362 None:intergenic 40.0%
!! CTTCTTTGGTGCTTGACATT+GGG - tig0020453:129344-129363 None:intergenic 40.0%
!! TCTTCTTTGGTGCTTGACAT+TGG - tig0020453:129345-129364 None:intergenic 40.0%
AATGTCAAGCACCAAAGAAG+AGG + tig0020453:129344-129363 Msa1381830:CDS 40.0%
TACTCAGCAAACCTCTTCTT+TGG - tig0020453:129358-129377 None:intergenic 40.0%
GCTGAGTATGATGTTAACAC+AGG + tig0020453:129370-129389 Msa1381830:CDS 40.0%
GTTAACACAGGAAGAGCTAT+TGG + tig0020453:129382-129401 Msa1381830:CDS 40.0%
GTTATTATTGGACTTGTGGC+TGG + tig0020453:129430-129449 Msa1381830:CDS 40.0%
ATTCCAAGGTTGGACAACTT+TGG - tig0020453:129539-129558 None:intergenic 40.0%
CTATTGGGTGAAAACCATGT+GGG - tig0020453:129780-129799 None:intergenic 40.0%
TCTATTGGGTGAAAACCATG+TGG - tig0020453:129781-129800 None:intergenic 40.0%
CACAAAAGAACCTCACCATC+TGG - tig0020453:126769-126788 None:intergenic 45.0%
CACCAACTCAACTAAGCTTG+TGG + tig0020453:126863-126882 Msa1381830:five_prime_UTR 45.0%
AGCCACAAGCTTAGTTGAGT+TGG - tig0020453:126868-126887 None:intergenic 45.0%
ATAGCTGACATGGTTCCTTG+TGG - tig0020453:127009-127028 None:intergenic 45.0%
ACAAGGAACCATGTCAGCTA+TGG + tig0020453:127008-127027 Msa1381830:exon 45.0%
GTTACTCCTTGTGGTGAAAG+TGG - tig0020453:127052-127071 None:intergenic 45.0%
CTCACCTTAGGCCAAAAGAA+TGG + tig0020453:127520-127539 Msa1381830:CDS 45.0%
ACCTTAGGCCAAAAGAATGG+TGG + tig0020453:127523-127542 Msa1381830:CDS 45.0%
TTAGGCCAAAAGAATGGTGG+CGG + tig0020453:127526-127545 Msa1381830:CDS 45.0%
!! TGGTGGCGGTGTTGTTATAA+CGG + tig0020453:127540-127559 Msa1381830:CDS 45.0%
!! CAGCACCGACATTTCATTTC+AGG + tig0020453:127619-127638 Msa1381830:intron 45.0%
GTTGTGTCCTATGTCTGTGT+CGG + tig0020453:127734-127753 Msa1381830:intron 45.0%
!! GTCGGTGCTTTCTGGTTTAA+AGG + tig0020453:127752-127771 Msa1381830:intron 45.0%
CTTCTTTAGGCTGTTGAAGG+TGG + tig0020453:127811-127830 Msa1381830:intron 45.0%
TTTAGGCTGTTGAAGGTGGA+GGG + tig0020453:127815-127834 Msa1381830:intron 45.0%
CAAGAGCAGGGTTAAAGTCA+GGG + tig0020453:127845-127864 Msa1381830:CDS 45.0%
AAGAGCAGGGTTAAAGTCAG+GGG + tig0020453:127846-127865 Msa1381830:CDS 45.0%
TTATGGCCAGCAGATAAGCT+TGG + tig0020453:127907-127926 Msa1381830:CDS 45.0%
GTGAATCCAAGCTTATCTGC+TGG - tig0020453:127916-127935 None:intergenic 45.0%
! CTGTCTACTTTGTTGTCAGC+AGG + tig0020453:127965-127984 Msa1381830:CDS 45.0%
AAGGCAAATGTGAGTAGCTC+TGG - tig0020453:128922-128941 None:intergenic 45.0%
ACTCACATTTGCCTTGACTG+TGG + tig0020453:128927-128946 Msa1381830:CDS 45.0%
CACGTTCGTTGGTATCATGT+TGG - tig0020453:129142-129161 None:intergenic 45.0%
CAACATGATACCAACGAACG+TGG + tig0020453:129140-129159 Msa1381830:intron 45.0%
AACACAGGAAGAGCTATTGG+TGG + tig0020453:129385-129404 Msa1381830:CDS 45.0%
!! ATTGGACTTGTGGCTGGTTT+AGG + tig0020453:129436-129455 Msa1381830:CDS 45.0%
!! TTGGACTTGTGGCTGGTTTA+GGG + tig0020453:129437-129456 Msa1381830:CDS 45.0%
! AAGGTTGGACAACTTTGGAG+TGG - tig0020453:129534-129553 None:intergenic 45.0%
ACTCCAAAGTTGTCCAACCT+TGG + tig0020453:129533-129552 Msa1381830:three_prime_UTR 45.0%
TGGGACTCACCACTTTATGT+GGG - tig0020453:129761-129780 None:intergenic 45.0%
ATAAAGTGGTGAGTCCCACA+TGG + tig0020453:129763-129782 Msa1381830:three_prime_UTR 45.0%
ACCATGTCAGCTATGGTTGC+AGG + tig0020453:127015-127034 Msa1381830:exon 50.0%
ACCTGCAACCATAGCTGACA+TGG - tig0020453:127019-127038 None:intergenic 50.0%
GATGGAGTGGTTACTCCTTG+TGG - tig0020453:127061-127080 None:intergenic 50.0%
ACATGGAGGAGTGAGTGTCT+TGG - tig0020453:127106-127125 None:intergenic 50.0%
AACGGTACCTGTACCTGACA+TGG - tig0020453:127123-127142 None:intergenic 50.0%
!! GAAGCCAAAAGGGGTGTTTC+AGG + tig0020453:127376-127395 Msa1381830:CDS 50.0%
! GGATCCTGAAACACCCCTTT+TGG - tig0020453:127383-127402 None:intergenic 50.0%
GGTGTTTCAGGATCCTTCCT+AGG + tig0020453:127388-127407 Msa1381830:CDS 50.0%
GAGATCACTGCAAGAACTGC+TGG + tig0020453:127454-127473 Msa1381830:CDS 50.0%
AAGCCACTTGGTCTCACCTT+AGG + tig0020453:127508-127527 Msa1381830:CDS 50.0%
! GCCACCATTCTTTTGGCCTA+AGG - tig0020453:127527-127546 None:intergenic 50.0%
! CAACACCGCCACCATTCTTT+TGG - tig0020453:127534-127553 None:intergenic 50.0%
TGACACGACACCGACACATA+TGG + tig0020453:127662-127681 Msa1381830:intron 50.0%
!! GAAAGCACCGACACAGACAT+AGG - tig0020453:127744-127763 None:intergenic 50.0%
! ATGTCTGTGTCGGTGCTTTC+TGG + tig0020453:127744-127763 Msa1381830:intron 50.0%
CTTTAGGCTGTTGAAGGTGG+AGG + tig0020453:127814-127833 Msa1381830:intron 50.0%
GCAAGAGCAGGGTTAAAGTC+AGG + tig0020453:127844-127863 Msa1381830:CDS 50.0%
! AATTTTCTCCCGAAGCGAGG+AGG - tig0020453:128743-128762 None:intergenic 50.0%
! GTCAATTTTCTCCCGAAGCG+AGG - tig0020453:128746-128765 None:intergenic 50.0%
! TGTCGTACCTGGTTTGTGTG+TGG + tig0020453:129203-129222 Msa1381830:intron 50.0%
TGGGGACAACTGTATGTGTC+CGG - tig0020453:129325-129344 None:intergenic 50.0%
ACAGGAAGAGCTATTGGTGG+TGG + tig0020453:129388-129407 Msa1381830:CDS 50.0%
!! GAAGAGCTATTGGTGGTGGA+GGG + tig0020453:129392-129411 Msa1381830:CDS 50.0%
!! TGGACTTGTGGCTGGTTTAG+GGG + tig0020453:129438-129457 Msa1381830:CDS 50.0%
GTGGGACTCACCACTTTATG+TGG - tig0020453:129762-129781 None:intergenic 50.0%
TGTGGTGAAAGTGGCAGAGG+AGG - tig0020453:127043-127062 None:intergenic 55.0%
CCTTGTGGTGAAAGTGGCAG+AGG - tig0020453:127046-127065 None:intergenic 55.0%
!! CCTCTGCCACTTTCACCACA+AGG + tig0020453:127043-127062 Msa1381830:CDS 55.0%
GGAGGAGTGAGTGTCTTGGA+AGG - tig0020453:127102-127121 None:intergenic 55.0%
GACACTCACTCCTCCATGTC+AGG + tig0020453:127107-127126 Msa1381830:CDS 55.0%
CACTCCTCCATGTCAGGTAC+AGG + tig0020453:127113-127132 Msa1381830:CDS 55.0%
GGTACCTGTACCTGACATGG+AGG - tig0020453:127120-127139 None:intergenic 55.0%
GCTGAGGTTGACAAGCCACT+TGG + tig0020453:127496-127515 Msa1381830:CDS 55.0%
TGGCCTAAGGTGAGACCAAG+TGG - tig0020453:127514-127533 None:intergenic 55.0%
GAGGGAATGCAGCAAGAGCA+GGG + tig0020453:127833-127852 Msa1381830:CDS 55.0%
TCTGGCCTGCAGTGTACACT+TGG - tig0020453:128904-128923 None:intergenic 55.0%
! CGTACCTGGTTTGTGTGTGG+CGG + tig0020453:129206-129225 Msa1381830:intron 55.0%
!! GGAAGAGCTATTGGTGGTGG+AGG + tig0020453:129391-129410 Msa1381830:CDS 55.0%
GGAGGGAATGCAGCAAGAGC+AGG + tig0020453:127832-127851 Msa1381830:CDS 60.0%
! CGAGGAGGAGCAGGACGTTT+TGG - tig0020453:128728-128747 None:intergenic 60.0%
AGCACCGCCACACACAAACC+AGG - tig0020453:129213-129232 None:intergenic 60.0%
GGTGGAGGGTTGCCTCCAAT+TGG + tig0020453:129406-129425 Msa1381830:CDS 60.0%
!! GTGGCTGGTTTAGGGGCTGT+TGG + tig0020453:129445-129464 Msa1381830:CDS 60.0%
CGGCTTGAGGCCAGATGGTG+AGG + tig0020453:126756-126775 Msa1381830:five_prime_UTR 65.0%
CGTCCTGCTCCTCCTCGCTT+CGG + tig0020453:128731-128750 Msa1381830:CDS 65.0%
GTCCTGCTCCTCCTCGCTTC+GGG + tig0020453:128732-128751 Msa1381830:CDS 65.0%
CTCCCGAAGCGAGGAGGAGC+AGG - tig0020453:128737-128756 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
tig0020453 gene 126754 129853 126754 ID=Msa1381830;Name=Msa1381830
tig0020453 mRNA 126754 129853 126754 ID=Msa1381830-mRNA-1;Parent=Msa1381830;Name=Msa1381830-mRNA-1;_AED=0.03;_eAED=0.03;_QI=264|0.8|0.83|1|0.8|0.83|6|358|278
tig0020453 exon 126754 127134 126754 ID=Msa1381830-mRNA-1:exon:7734;Parent=Msa1381830-mRNA-1
tig0020453 exon 127346 127561 127346 ID=Msa1381830-mRNA-1:exon:7735;Parent=Msa1381830-mRNA-1
tig0020453 exon 127820 127986 127820 ID=Msa1381830-mRNA-1:exon:7736;Parent=Msa1381830-mRNA-1
tig0020453 exon 128694 128787 128694 ID=Msa1381830-mRNA-1:exon:7737;Parent=Msa1381830-mRNA-1
tig0020453 exon 128918 128986 128918 ID=Msa1381830-mRNA-1:exon:7738;Parent=Msa1381830-mRNA-1
tig0020453 exon 129322 129853 129322 ID=Msa1381830-mRNA-1:exon:7739;Parent=Msa1381830-mRNA-1
tig0020453 five_prime_UTR 126754 127017 126754 ID=Msa1381830-mRNA-1:five_prime_utr;Parent=Msa1381830-mRNA-1
tig0020453 CDS 127018 127134 127018 ID=Msa1381830-mRNA-1:cds;Parent=Msa1381830-mRNA-1
tig0020453 CDS 127346 127561 127346 ID=Msa1381830-mRNA-1:cds;Parent=Msa1381830-mRNA-1
tig0020453 CDS 127820 127986 127820 ID=Msa1381830-mRNA-1:cds;Parent=Msa1381830-mRNA-1
tig0020453 CDS 128694 128787 128694 ID=Msa1381830-mRNA-1:cds;Parent=Msa1381830-mRNA-1
tig0020453 CDS 128918 128986 128918 ID=Msa1381830-mRNA-1:cds;Parent=Msa1381830-mRNA-1
tig0020453 CDS 129322 129495 129322 ID=Msa1381830-mRNA-1:cds;Parent=Msa1381830-mRNA-1
tig0020453 three_prime_UTR 129496 129853 129496 ID=Msa1381830-mRNA-1:three_prime_utr;Parent=Msa1381830-mRNA-1
Gene Sequence

>Msa1381830

ATGTCAGCTATGGTTGCAGGTACCTCCTCTGCCACTTTCACCACAAGGAGTAACCACTCCATCAAAAACACTCACATCAGACCTTCCAAGACACTCACTCCTCCATGTCAGGTACAGAAAACATCTTTGCTAGGCCTCTCACTTCATGAAGCCAAAAGGGGTGTTTCAGGATCCTTCCTAGGTGACAACAAAAGTGGTTCTTCCTCCATTGCTAGAAAGAGACTTGAGATCACTGCAAGAACTGCTGGAGCTTCAAAGACAATTGAAGCTGAGGTTGACAAGCCACTTGGTCTCACCTTAGGCCAAAAGAATGGTGGCGGTGTTGTTATAACGGCTGTTGAAGGTGGAGGGAATGCAGCAAGAGCAGGGTTAAAGTCAGGGGACCAAGTTCTATATACTAGCAGTTTCTTTGGAGATGAATTATGGCCAGCAGATAAGCTTGGATTCACGAAAACAGCAATCAACGCTAAGCCTGACTCTGTCTACTTTGTTGTCAGCAGAGGTGGTGCTGATGTAGATGTTAAAAGGCTTCCAAAACGTCCTGCTCCTCCTCGCTTCGGGAGAAAATTGACTGAGACTCAAAAGGCAAGAATCGCCAGAGCTACTCACATTTGCCTTGACTGTGGATACATATACTTCTTACCAAAATCTTTTGATGACCAGCCGGACACATACAGTTGTCCCCAATGTCAAGCACCAAAGAAGAGGTTTGCTGAGTATGATGTTAACACAGGAAGAGCTATTGGTGGTGGAGGGTTGCCTCCAATTGGAGTTATTATTGGACTTGTGGCTGGTTTAGGGGCTGTTGGAGCTTTACTTGTTTTTGGTCTTCAGTGA

Protein sequence

>Msa1381830

MSAMVAGTSSATFTTRSNHSIKNTHIRPSKTLTPPCQVQKTSLLGLSLHEAKRGVSGSFLGDNKSGSSSIARKRLEITARTAGASKTIEAEVDKPLGLTLGQKNGGGVVITAVEGGGNAARAGLKSGDQVLYTSSFFGDELWPADKLGFTKTAINAKPDSVYFVVSRGGADVDVKRLPKRPAPPRFGRKLTETQKARIARATHICLDCGYIYFLPKSFDDQPDTYSCPQCQAPKKRFAEYDVNTGRAIGGGGLPPIGVIIGLVAGLGAVGALLVFGLQ*