Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0313730 | XP_003593747.2 | 96.860 | 414 | 13 | 0 | 1 | 414 | 20 | 433 | 0.0 | 826 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0313730 | sp|O49523|DSEL_ARATH | 61.461 | 397 | 148 | 3 | 20 | 413 | 19 | 413 | 0.0 | 520 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0313730 | A0A396J2K2 | 96.860 | 414 | 13 | 0 | 1 | 414 | 20 | 433 | 0.0 | 826 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0140880 | Msa0313730 | 0.809511 | 1.824934e-50 | -8.615850e-47 |
| Msa0192910 | Msa0313730 | 0.913607 | 5.057370e-84 | -8.615850e-47 |
| Msa0235110 | Msa0313730 | 0.901453 | 2.640172e-78 | -8.615850e-47 |
| Msa0273500 | Msa0313730 | 0.991888 | 4.201424e-190 | -8.615850e-47 |
| Msa0313730 | Msa0326710 | 0.828121 | 1.071774e-54 | -8.615850e-47 |
| Msa0313730 | Msa0574900 | 0.800526 | 1.382616e-48 | -8.615850e-47 |
| Msa0313730 | Msa0586450 | 0.802213 | 6.240747e-49 | -8.615850e-47 |
| Msa0313730 | Msa1031390 | 0.813021 | 3.160798e-51 | -8.615850e-47 |
| Msa0313730 | Msa1070890 | 0.800747 | 1.246505e-48 | -8.615850e-47 |
| Msa0313730 | Msa1219830 | 0.802262 | 6.099822e-49 | -8.615850e-47 |
| Msa0313730 | Msa1365820 | 0.805286 | 1.436160e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0313730 | MtrunA17_Chr2g0283561 | 96.860 | 414 | 13 | 0 | 1 | 414 | 20 | 433 | 0.0 | 826 |
| Msa0313730 | MtrunA17_Chr4g0046001 | 62.374 | 396 | 141 | 4 | 19 | 412 | 12 | 401 | 8.58e-177 | 499 |
| Msa0313730 | MtrunA17_Chr4g0046011 | 61.364 | 396 | 145 | 4 | 19 | 412 | 3 | 392 | 2.44e-174 | 493 |
| Msa0313730 | MtrunA17_Chr4g0041311 | 47.044 | 406 | 180 | 5 | 24 | 404 | 32 | 427 | 3.30e-124 | 367 |
| Msa0313730 | MtrunA17_Chr4g0039301 | 43.489 | 407 | 197 | 8 | 20 | 404 | 100 | 495 | 1.07e-105 | 322 |
| Msa0313730 | MtrunA17_Chr7g0260671 | 40.714 | 420 | 221 | 6 | 8 | 406 | 62 | 474 | 3.73e-102 | 312 |
| Msa0313730 | MtrunA17_Chr7g0260681 | 40.113 | 354 | 184 | 6 | 20 | 352 | 74 | 420 | 9.81e-83 | 259 |
| Msa0313730 | MtrunA17_Chr5g0399641 | 34.635 | 384 | 194 | 9 | 20 | 369 | 135 | 495 | 6.44e-63 | 211 |
| Msa0313730 | MtrunA17_Chr7g0250611 | 36.986 | 365 | 184 | 15 | 19 | 361 | 74 | 414 | 9.01e-58 | 195 |
| Msa0313730 | MtrunA17_Chr7g0214711 | 35.143 | 350 | 179 | 10 | 20 | 347 | 105 | 428 | 3.51e-54 | 187 |
| Msa0313730 | MtrunA17_Chr7g0250561 | 34.975 | 406 | 197 | 15 | 14 | 370 | 63 | 450 | 2.78e-52 | 181 |
| Msa0313730 | MtrunA17_Chr4g0055691 | 33.071 | 381 | 197 | 9 | 19 | 369 | 128 | 480 | 7.81e-50 | 176 |
| Msa0313730 | MtrunA17_Chr2g0286301 | 30.769 | 182 | 91 | 8 | 131 | 310 | 89 | 237 | 7.60e-13 | 69.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0313730 | AT4G18550.2 | 61.461 | 397 | 148 | 3 | 20 | 413 | 36 | 430 | 0.0 | 520 |
| Msa0313730 | AT4G18550.1 | 61.461 | 397 | 148 | 3 | 20 | 413 | 19 | 413 | 0.0 | 520 |
| Msa0313730 | AT1G06250.1 | 52.685 | 391 | 178 | 2 | 20 | 406 | 5 | 392 | 2.96e-151 | 435 |
| Msa0313730 | AT4G18550.3 | 61.290 | 279 | 105 | 2 | 20 | 297 | 36 | 312 | 5.36e-126 | 367 |
| Msa0313730 | AT2G42690.1 | 44.096 | 415 | 203 | 5 | 18 | 412 | 2 | 407 | 1.43e-112 | 336 |
| Msa0313730 | AT1G06800.1 | 42.476 | 412 | 199 | 10 | 20 | 404 | 85 | 485 | 2.52e-102 | 313 |
| Msa0313730 | AT1G51440.1 | 43.468 | 421 | 195 | 11 | 19 | 408 | 86 | 494 | 1.68e-100 | 309 |
| Msa0313730 | AT1G06250.2 | 51.601 | 281 | 129 | 2 | 130 | 406 | 1 | 278 | 1.12e-99 | 300 |
| Msa0313730 | AT2G30550.2 | 40.380 | 421 | 214 | 10 | 10 | 404 | 91 | 500 | 2.93e-97 | 301 |
| Msa0313730 | AT1G06800.2 | 41.274 | 361 | 174 | 10 | 20 | 353 | 85 | 434 | 1.19e-84 | 266 |
| Msa0313730 | AT1G30370.1 | 37.857 | 420 | 226 | 8 | 6 | 404 | 100 | 505 | 7.15e-84 | 266 |
| Msa0313730 | AT2G30550.1 | 39.566 | 369 | 186 | 10 | 10 | 352 | 91 | 448 | 4.92e-82 | 259 |
| Msa0313730 | AT2G44810.2 | 35.884 | 379 | 180 | 13 | 20 | 361 | 86 | 438 | 8.01e-60 | 201 |
| Msa0313730 | AT2G44810.1 | 36.486 | 370 | 172 | 13 | 29 | 361 | 5 | 348 | 2.15e-58 | 195 |
| Msa0313730 | AT4G16820.1 | 35.602 | 382 | 187 | 8 | 18 | 368 | 125 | 478 | 3.74e-58 | 198 |
| Msa0313730 | AT1G05800.1 | 34.699 | 366 | 198 | 9 | 12 | 357 | 72 | 416 | 1.22e-55 | 191 |
| Msa0313730 | AT2G31690.1 | 34.770 | 348 | 189 | 7 | 20 | 347 | 88 | 417 | 9.80e-55 | 189 |
| Msa0313730 | AT5G18640.5 | 32.927 | 164 | 83 | 6 | 149 | 310 | 100 | 238 | 5.20e-15 | 75.5 |
| Msa0313730 | AT5G18640.4 | 31.868 | 182 | 90 | 7 | 131 | 310 | 101 | 250 | 1.16e-14 | 75.5 |
| Msa0313730 | AT5G18640.2 | 31.868 | 182 | 90 | 7 | 131 | 310 | 101 | 250 | 1.16e-14 | 75.5 |
| Msa0313730 | AT5G18640.1 | 32.927 | 164 | 83 | 6 | 149 | 310 | 100 | 238 | 1.17e-14 | 75.5 |
| Msa0313730 | AT5G18640.3 | 32.927 | 164 | 83 | 6 | 149 | 310 | 100 | 238 | 1.17e-14 | 75.5 |
Find 90 sgRNAs with CRISPR-Local
Find 159 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTCTTATTGAAGGGAGATTT+TGG | 0.169096 | 2_4:+9169852 | None:intergenic |
| GTTTCTGCTCCTAAAGTATT+TGG | 0.175913 | 2_4:-9169942 | Msa0313730:CDS |
| ACATCTGCATACCCAATAAA+AGG | 0.189119 | 2_4:+9168413 | None:intergenic |
| ATGGAGGGTTGTAGAGAATA+AGG | 0.217063 | 2_4:-9168180 | Msa0313730:CDS |
| ACATAGATTTACCTGGTTTC+GGG | 0.243614 | 2_4:+9169824 | None:intergenic |
| TGGATCTTCAGAAGTATAAA+TGG | 0.266518 | 2_4:+9169872 | None:intergenic |
| AACATAGATTTACCTGGTTT+CGG | 0.276273 | 2_4:+9169823 | None:intergenic |
| TAATGATCTTCAGTTTCTTT+TGG | 0.277450 | 2_4:-9169964 | Msa0313730:CDS |
| CTGCTATTACCAAATACTTT+AGG | 0.283364 | 2_4:+9169933 | None:intergenic |
| TTTGTTACAGAATATTTAAA+AGG | 0.323206 | 2_4:+9170179 | None:intergenic |
| TACCAACCTTGATGCACTTT+AGG | 0.338088 | 2_4:+9169897 | None:intergenic |
| CTTGGAGTAAGGAATCAAAT+TGG | 0.342591 | 2_4:-9170088 | Msa0313730:CDS |
| TACCCAATAAAAGGGTAGTT+TGG | 0.342990 | 2_4:+9168422 | None:intergenic |
| CGCTTCCGGAACATTGATTT+CGG | 0.366404 | 2_4:+9170139 | None:intergenic |
| ATTTACCTGGTTTCGGGCAC+TGG | 0.370820 | 2_4:+9169830 | None:intergenic |
| AGATGGTTCATGGAAGCTTA+TGG | 0.372107 | 2_4:-9168141 | Msa0313730:CDS |
| GCTATGCTGCTGTTGTTGTT+TGG | 0.373108 | 2_4:+9170413 | None:intergenic |
| GAAGGGATATTGTTATTGCT+TGG | 0.374037 | 2_4:-9170016 | Msa0313730:CDS |
| GAAATAAGCATAACTATAAC+AGG | 0.376230 | 2_4:-9168656 | Msa0313730:CDS |
| ACTATAACAGGTCACAGTTT+AGG | 0.384060 | 2_4:-9168644 | Msa0313730:CDS |
| CATAATCCACTATGGTGAAA+TGG | 0.388866 | 2_4:-9170312 | Msa0313730:CDS |
| CAAAGTTTGCAGGTAGTTGT+AGG | 0.393065 | 2_4:-9170250 | Msa0313730:CDS |
| TCGGGCACTGGTCTTATTGA+AGG | 0.398715 | 2_4:+9169842 | None:intergenic |
| AACTCAGCGGCGAAAATCAT+TGG | 0.405365 | 2_4:-9170376 | Msa0313730:CDS |
| GGAAAGATGTGTTGGGGAGA+AGG | 0.411910 | 2_4:-9170034 | Msa0313730:CDS |
| GACTTTATAATAAACGCTTC+CGG | 0.415146 | 2_4:+9170125 | None:intergenic |
| GTAAGGAATCAAATTGGATT+GGG | 0.415930 | 2_4:-9170082 | Msa0313730:CDS |
| AGTAAGGAATCAAATTGGAT+TGG | 0.423060 | 2_4:-9170083 | Msa0313730:CDS |
| GCTTATTTGCATGGAGTGGC+AGG | 0.430370 | 2_4:-9168308 | Msa0313730:CDS |
| TCTAGGGCTAGCAAATACTA+TGG | 0.437648 | 2_4:+9168529 | None:intergenic |
| GCAAATACTATGGCTGTAAC+TGG | 0.439803 | 2_4:+9168539 | None:intergenic |
| TTCAACAATCAGATGGTTCA+TGG | 0.443571 | 2_4:-9168151 | Msa0313730:CDS |
| AACGATACAAACTTTGGAAT+GGG | 0.445770 | 2_4:-9169988 | Msa0313730:CDS |
| GACTTCCGAAATCAATGTTC+CGG | 0.446184 | 2_4:-9170144 | Msa0313730:CDS |
| GAGAAAGCATCAAAGTTTGC+AGG | 0.452694 | 2_4:-9170260 | Msa0313730:CDS |
| ATCTAGAGAAGCTTGGAGTA+AGG | 0.456251 | 2_4:-9170099 | Msa0313730:CDS |
| CGACGTTACATAATCCACTA+TGG | 0.458056 | 2_4:-9170320 | Msa0313730:CDS |
| AAGTTTGTGTCACCAACTCT+AGG | 0.461380 | 2_4:+9168512 | None:intergenic |
| GAAAGATGTGTTGGGGAGAA+GGG | 0.463613 | 2_4:-9170033 | Msa0313730:CDS |
| GCAGTGGACATTGTTACAAA+TGG | 0.466972 | 2_4:-9168599 | Msa0313730:CDS |
| GAGAGGAACGATACAAACTT+TGG | 0.468667 | 2_4:-9169994 | Msa0313730:CDS |
| TCTATGTATTTGAAGAGTCC+AGG | 0.484311 | 2_4:-9168359 | Msa0313730:CDS |
| AATTTGGAGGCTTATTTGCA+TGG | 0.495411 | 2_4:-9168317 | Msa0313730:CDS |
| AGTCTTTATCTAGAGAAGCT+TGG | 0.498976 | 2_4:-9170106 | Msa0313730:CDS |
| TTTAAGTTGGCATAATTTGG+AGG | 0.502108 | 2_4:-9168330 | Msa0313730:CDS |
| TGCCAACTTAAAATATTCCC+TGG | 0.503206 | 2_4:+9168341 | None:intergenic |
| GATGAAGGGAAAGATGTGTT+GGG | 0.510788 | 2_4:-9170041 | Msa0313730:CDS |
| CTTGTGCCATTTCACCATAG+TGG | 0.510988 | 2_4:+9170306 | None:intergenic |
| GAGTAGCAATCATGATCAAA+AGG | 0.511049 | 2_4:-9170463 | Msa0313730:exon |
| TTGGATTGGGTTTGTTGCTG+TGG | 0.511970 | 2_4:-9170069 | Msa0313730:CDS |
| CTTAAGTGAGGTGAGAAGGT+TGG | 0.512596 | 2_4:-9168699 | Msa0313730:CDS |
| AAGTGAGGTGAGAAGGTTGG+TGG | 0.515539 | 2_4:-9168696 | Msa0313730:CDS |
| TGGAGGGTTGTAGAGAATAA+GGG | 0.516398 | 2_4:-9168179 | Msa0313730:CDS |
| GAACGATACAAACTTTGGAA+TGG | 0.518160 | 2_4:-9169989 | Msa0313730:CDS |
| ACAGCAGCATAGCAAACAAA+TGG | 0.523423 | 2_4:-9170403 | Msa0313730:CDS |
| CGGGCACTGGTCTTATTGAA+GGG | 0.526702 | 2_4:+9169843 | None:intergenic |
| GGTTGTAGAGAATAAGGGTA+TGG | 0.529061 | 2_4:-9168174 | Msa0313730:CDS |
| CATCTGCATACCCAATAAAA+GGG | 0.530668 | 2_4:+9168414 | None:intergenic |
| GTTGCTGTGGCTAATGATGA+AGG | 0.534220 | 2_4:-9170056 | Msa0313730:CDS |
| TGATGAAGGGAAAGATGTGT+TGG | 0.535789 | 2_4:-9170042 | Msa0313730:CDS |
| TTTATTGGGTATGCAGATGT+TGG | 0.539197 | 2_4:-9168410 | Msa0313730:CDS |
| CATGGAGTGGCAGGAACACA+AGG | 0.541108 | 2_4:-9168299 | Msa0313730:CDS |
| ATCCTAAAGTGCATCAAGGT+TGG | 0.542256 | 2_4:-9169899 | Msa0313730:CDS |
| TGCACTTGTGAATAAAACAT+TGG | 0.548353 | 2_4:-9168237 | Msa0313730:CDS |
| CTTGTGAATAAAACATTGGA+TGG | 0.548661 | 2_4:-9168233 | Msa0313730:CDS |
| TAAGACCAGTGCCCGAAACC+AGG | 0.563404 | 2_4:-9169835 | Msa0313730:intron |
| AGGTCTTAAGTGAGGTGAGA+AGG | 0.577836 | 2_4:-9168703 | Msa0313730:CDS |
| TCTACAACCCTCCATGACAC+TGG | 0.578955 | 2_4:+9168188 | None:intergenic |
| AGTTTGTGTCACCAACTCTA+GGG | 0.582592 | 2_4:+9168513 | None:intergenic |
| GTATTTGCTAGCCCTAGAGT+TGG | 0.582655 | 2_4:-9168524 | Msa0313730:CDS |
| AATACCTTGTGCCAGTGTCA+TGG | 0.585230 | 2_4:-9168199 | Msa0313730:CDS |
| CTATGTATTTGAAGAGTCCA+GGG | 0.587725 | 2_4:-9168358 | Msa0313730:CDS |
| GGAGGCTTATTTGCATGGAG+TGG | 0.592309 | 2_4:-9168312 | Msa0313730:CDS |
| GATATTGTTATTGCTTGGAG+AGG | 0.596230 | 2_4:-9170011 | Msa0313730:CDS |
| AATGATCCTAAAGTGCATCA+AGG | 0.597945 | 2_4:-9169903 | Msa0313730:CDS |
| ATGGAAGCTTATGGATCATG+AGG | 0.613240 | 2_4:-9168132 | Msa0313730:CDS |
| CCCTCCATGACACTGGCACA+AGG | 0.616143 | 2_4:+9168195 | None:intergenic |
| CGTCGTAGATCAATGTCAAG+AGG | 0.622571 | 2_4:+9170338 | None:intergenic |
| GTCGTAGATCAATGTCAAGA+GGG | 0.625735 | 2_4:+9170339 | None:intergenic |
| AGCGGCGAAAATCATTGGAT+AGG | 0.626832 | 2_4:-9170371 | Msa0313730:CDS |
| GGTATGGTTCAACAATCAGA+TGG | 0.636286 | 2_4:-9168158 | Msa0313730:CDS |
| ACCTTGTGCCAGTGTCATGG+AGG | 0.647161 | 2_4:-9168196 | Msa0313730:CDS |
| ATTTGTGCAGGTCTTAAGTG+AGG | 0.649606 | 2_4:-9168711 | Msa0313730:intron |
| TAGCAATCATGATCAAAAGG+TGG | 0.653386 | 2_4:-9170460 | Msa0313730:exon |
| TTGCTGTGGCTAATGATGAA+GGG | 0.655838 | 2_4:-9170055 | Msa0313730:CDS |
| ATGAAGGGAAAGATGTGTTG+GGG | 0.669413 | 2_4:-9170040 | Msa0313730:CDS |
| CCTTGTGCCAGTGTCATGGA+GGG | 0.679650 | 2_4:-9168195 | Msa0313730:CDS |
| AATTGCAACTCTAAATGCAG+TGG | 0.688195 | 2_4:-9168615 | Msa0313730:CDS |
| AACAAATGGCAACAACTCAG+CGG | 0.706384 | 2_4:-9170389 | Msa0313730:CDS |
| ATGGAGTGGCAGGAACACAA+GGG | 0.725550 | 2_4:-9168298 | Msa0313730:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAGTATTTTTTTCTTTAAAA+CGG | - | chr2_4:9168685-9168704 | Msa0313730:CDS | 10.0% |
| !!! | ATATCAATTATTTTATTTGA+GGG | + | chr2_4:9169074-9169093 | None:intergenic | 10.0% |
| !!! | TATATCAATTATTTTATTTG+AGG | + | chr2_4:9169075-9169094 | None:intergenic | 10.0% |
| !! | AACCAAAAAAAATATTAAAT+TGG | - | chr2_4:9169303-9169322 | Msa0313730:intron | 10.0% |
| !!! | AACCAATTTAATATTTTTTT+TGG | + | chr2_4:9169308-9169327 | None:intergenic | 10.0% |
| !! | TAAACAAAAATTTATATTTG+TGG | - | chr2_4:9169629-9169648 | Msa0313730:intron | 10.0% |
| !! | ACACTTTAATTAAAAAAAAT+TGG | - | chr2_4:9169719-9169738 | Msa0313730:intron | 10.0% |
| !!! | TCTAAAGTTTTTTTAGAAAA+TGG | - | chr2_4:9168280-9168299 | Msa0313730:CDS | 15.0% |
| !! | TTTGTTACAGAATATTTAAA+AGG | + | chr2_4:9168310-9168329 | None:intergenic | 15.0% |
| !!! | AGTATTTTTTTCTTTAAAAC+GGG | - | chr2_4:9168686-9168705 | Msa0313730:CDS | 15.0% |
| !! | CATAATGAAAAACTAATATA+TGG | + | chr2_4:9168894-9168913 | None:intergenic | 15.0% |
| !!! | TTTTTCCTTGATTTTTTTTT+TGG | + | chr2_4:9169049-9169068 | None:intergenic | 15.0% |
| !! | AAAAAAAAAATCAAGGAAAA+AGG | - | chr2_4:9169048-9169067 | Msa0313730:intron | 15.0% |
| !!! | AGATTATATTAGTTTGATAT+TGG | + | chr2_4:9169531-9169550 | None:intergenic | 15.0% |
| !! | AAAATAAAAATTCAAGTGTT+TGG | - | chr2_4:9169561-9169580 | Msa0313730:intron | 15.0% |
| !!! | GTATTTTTTTCTTTAAAACG+GGG | - | chr2_4:9168687-9168706 | Msa0313730:CDS | 20.0% |
| !!! | TATTTTTTTCTTTAAAACGG+GGG | - | chr2_4:9168688-9168707 | Msa0313730:CDS | 20.0% |
| !!! | TGATTTTAGCAGTTAAAATA+TGG | + | chr2_4:9168939-9168958 | None:intergenic | 20.0% |
| !! | TTTAACTGCTAAAATCAATA+TGG | - | chr2_4:9168942-9168961 | Msa0313730:intron | 20.0% |
| !!! | AACCATATTGTTTTTTTCAA+GGG | + | chr2_4:9168973-9168992 | None:intergenic | 20.0% |
| !!! | AAACCATATTGTTTTTTTCA+AGG | + | chr2_4:9168974-9168993 | None:intergenic | 20.0% |
| !! | AGAGAATAATATTAGAAAAG+AGG | - | chr2_4:9169106-9169125 | Msa0313730:intron | 20.0% |
| !!! | TATATGACTATTTCTTTAGT+TGG | + | chr2_4:9169371-9169390 | None:intergenic | 20.0% |
| !!! | TCTTATTTACAAGTTTATTG+TGG | - | chr2_4:9169395-9169414 | Msa0313730:intron | 20.0% |
| !!! | AAATGATTGATTAGTTGTTA+AGG | - | chr2_4:9169588-9169607 | Msa0313730:intron | 20.0% |
| !!! | ATTTTTGTTTATTTGCTTGA+TGG | + | chr2_4:9169620-9169639 | None:intergenic | 20.0% |
| !!! | TATTTTAAGTTGGCATAATT+TGG | - | chr2_4:9170153-9170172 | Msa0313730:CDS | 20.0% |
| !!! | TATCATTGTTTTTTAGTTTG+AGG | - | chr2_4:9170432-9170451 | Msa0313730:CDS | 20.0% |
| !! | TAATGATCTTCAGTTTCTTT+TGG | - | chr2_4:9168522-9168541 | Msa0313730:CDS | 25.0% |
| ! | AATACTAACATAGATTTACC+TGG | + | chr2_4:9168672-9168691 | None:intergenic | 25.0% |
| ! | ATGCTCAATAAAGCAAATAT+AGG | - | chr2_4:9168788-9168807 | Msa0313730:intron | 25.0% |
| ! | CATATATCTCTTTCAAAGTT+TGG | + | chr2_4:9168845-9168864 | None:intergenic | 25.0% |
| ! | TTCCCTTGAAAAAAACAATA+TGG | - | chr2_4:9168968-9168987 | Msa0313730:intron | 25.0% |
| !!! | TTCCTTGATTTTTTTTTTGG+AGG | + | chr2_4:9169046-9169065 | None:intergenic | 25.0% |
| !!! | ATATTTTTATCATGTGAGCT+AGG | + | chr2_4:9169194-9169213 | None:intergenic | 25.0% |
| !! | AATAATTTGACCTTTGGAAA+AGG | + | chr2_4:9169339-9169358 | None:intergenic | 25.0% |
| ! | TAATATAGTTTAGTCCATGT+AGG | + | chr2_4:9169478-9169497 | None:intergenic | 25.0% |
| ! | GAAATAAGCATAACTATAAC+AGG | - | chr2_4:9169830-9169849 | Msa0313730:intron | 25.0% |
| GACTTTATAATAAACGCTTC+CGG | + | chr2_4:9168364-9168383 | None:intergenic | 30.0% | |
| AGTAAGGAATCAAATTGGAT+TGG | - | chr2_4:9168403-9168422 | Msa0313730:CDS | 30.0% | |
| GTAAGGAATCAAATTGGATT+GGG | - | chr2_4:9168404-9168423 | Msa0313730:CDS | 30.0% | |
| !! | AACGATACAAACTTTGGAAT+GGG | - | chr2_4:9168498-9168517 | Msa0313730:CDS | 30.0% |
| CTGCTATTACCAAATACTTT+AGG | + | chr2_4:9168556-9168575 | None:intergenic | 30.0% | |
| ! | TGGATCTTCAGAAGTATAAA+TGG | + | chr2_4:9168617-9168636 | None:intergenic | 30.0% |
| AACATAGATTTACCTGGTTT+CGG | + | chr2_4:9168666-9168685 | None:intergenic | 30.0% | |
| AACCAGATGGTTTATGAAAA+AGG | + | chr2_4:9168821-9168840 | None:intergenic | 30.0% | |
| ! | AATATGGTTTGTGTATTACG+TGG | - | chr2_4:9168984-9169003 | Msa0313730:intron | 30.0% |
| ! | ATATGGTTTGTGTATTACGT+GGG | - | chr2_4:9168985-9169004 | Msa0313730:intron | 30.0% |
| !! | TTTTTGGAGGTCTAAAACAA+GGG | + | chr2_4:9169033-9169052 | None:intergenic | 30.0% |
| !!! | TTTTTTGGAGGTCTAAAACA+AGG | + | chr2_4:9169034-9169053 | None:intergenic | 30.0% |
| GACCTCCAAAAAAAAAATCA+AGG | - | chr2_4:9169041-9169060 | Msa0313730:intron | 30.0% | |
| CCAAAAATATGACATTGTTG+CGG | + | chr2_4:9169143-9169162 | None:intergenic | 30.0% | |
| TGTGGAAATAATTTGACCTT+TGG | + | chr2_4:9169345-9169364 | None:intergenic | 30.0% | |
| !! | TATTTCTTTAGTTGGTCTTG+TGG | + | chr2_4:9169363-9169382 | None:intergenic | 30.0% |
| TAGTGGTAAGAATTCAACTT+AGG | - | chr2_4:9169683-9169702 | Msa0313730:intron | 30.0% | |
| AGAATTCAACTTAGGTAACA+TGG | - | chr2_4:9169691-9169710 | Msa0313730:intron | 30.0% | |
| !! | TGATAATTATCGATTTGTGC+AGG | - | chr2_4:9169763-9169782 | Msa0313730:intron | 30.0% |
| ! | TTCCAAACTACCCTTTTATT+GGG | - | chr2_4:9170062-9170081 | Msa0313730:CDS | 30.0% |
| !! | TTTAAGTTGGCATAATTTGG+AGG | - | chr2_4:9170156-9170175 | Msa0313730:CDS | 30.0% |
| TGCACTTGTGAATAAAACAT+TGG | - | chr2_4:9170249-9170268 | Msa0313730:CDS | 30.0% | |
| CTTGTGAATAAAACATTGGA+TGG | - | chr2_4:9170253-9170272 | Msa0313730:CDS | 30.0% | |
| GAGTAGCAATCATGATCAAA+AGG | - | chr2_4:9168023-9168042 | Msa0313730:three_prime_UTR | 35.0% | |
| TAGCAATCATGATCAAAAGG+TGG | - | chr2_4:9168026-9168045 | Msa0313730:three_prime_UTR | 35.0% | |
| CATAATCCACTATGGTGAAA+TGG | - | chr2_4:9168174-9168193 | Msa0313730:CDS | 35.0% | |
| AGTCTTTATCTAGAGAAGCT+TGG | - | chr2_4:9168380-9168399 | Msa0313730:CDS | 35.0% | |
| CTTGGAGTAAGGAATCAAAT+TGG | - | chr2_4:9168398-9168417 | Msa0313730:CDS | 35.0% | |
| ! | GAAGGGATATTGTTATTGCT+TGG | - | chr2_4:9168470-9168489 | Msa0313730:CDS | 35.0% |
| ! | GATATTGTTATTGCTTGGAG+AGG | - | chr2_4:9168475-9168494 | Msa0313730:CDS | 35.0% |
| ! | GAACGATACAAACTTTGGAA+TGG | - | chr2_4:9168497-9168516 | Msa0313730:CDS | 35.0% |
| ! | GTTTCTGCTCCTAAAGTATT+TGG | - | chr2_4:9168544-9168563 | Msa0313730:CDS | 35.0% |
| AATGATCCTAAAGTGCATCA+AGG | - | chr2_4:9168583-9168602 | Msa0313730:CDS | 35.0% | |
| !! | GTCTTATTGAAGGGAGATTT+TGG | + | chr2_4:9168637-9168656 | None:intergenic | 35.0% |
| ACATAGATTTACCTGGTTTC+GGG | + | chr2_4:9168665-9168684 | None:intergenic | 35.0% | |
| !! | TGCCTTTTTCATAAACCATC+TGG | - | chr2_4:9168816-9168835 | Msa0313730:intron | 35.0% |
| ! | CCGCAACAATGTCATATTTT+TGG | - | chr2_4:9169140-9169159 | Msa0313730:intron | 35.0% |
| GTTAGTTGAGACGTTATGAT+AGG | - | chr2_4:9169221-9169240 | Msa0313730:intron | 35.0% | |
| ATCTCACACATACAAAATCG+AGG | + | chr2_4:9169255-9169274 | None:intergenic | 35.0% | |
| ! | TTAGCGAAAACCTTTTCCAA+AGG | - | chr2_4:9169326-9169345 | Msa0313730:intron | 35.0% |
| AGCCTACAAATGTGTTAGAT+TGG | - | chr2_4:9169452-9169471 | Msa0313730:intron | 35.0% | |
| ATGTCTCATGGACATTCAAT+CGG | + | chr2_4:9169658-9169677 | None:intergenic | 35.0% | |
| TCCATGAGACATCAATTTAG+TGG | - | chr2_4:9169666-9169685 | Msa0313730:intron | 35.0% | |
| ACCACTAAATTGATGTCTCA+TGG | + | chr2_4:9169670-9169689 | None:intergenic | 35.0% | |
| ACTATAACAGGTCACAGTTT+AGG | - | chr2_4:9169842-9169861 | Msa0313730:CDS | 35.0% | |
| AATTGCAACTCTAAATGCAG+TGG | - | chr2_4:9169871-9169890 | Msa0313730:CDS | 35.0% | |
| ! | GTTCCAAACTACCCTTTTAT+TGG | - | chr2_4:9170061-9170080 | Msa0313730:CDS | 35.0% |
| TACCCAATAAAAGGGTAGTT+TGG | + | chr2_4:9170067-9170086 | None:intergenic | 35.0% | |
| CATCTGCATACCCAATAAAA+GGG | + | chr2_4:9170075-9170094 | None:intergenic | 35.0% | |
| ACATCTGCATACCCAATAAA+AGG | + | chr2_4:9170076-9170095 | None:intergenic | 35.0% | |
| TTTATTGGGTATGCAGATGT+TGG | - | chr2_4:9170076-9170095 | Msa0313730:CDS | 35.0% | |
| TCTATGTATTTGAAGAGTCC+AGG | - | chr2_4:9170127-9170146 | Msa0313730:CDS | 35.0% | |
| CTATGTATTTGAAGAGTCCA+GGG | - | chr2_4:9170128-9170147 | Msa0313730:CDS | 35.0% | |
| !! | GTCCAGGGAATATTTTAAGT+TGG | - | chr2_4:9170143-9170162 | Msa0313730:CDS | 35.0% |
| TGCCAACTTAAAATATTCCC+TGG | + | chr2_4:9170148-9170167 | None:intergenic | 35.0% | |
| AATTTGGAGGCTTATTTGCA+TGG | - | chr2_4:9170169-9170188 | Msa0313730:CDS | 35.0% | |
| TTCAACAATCAGATGGTTCA+TGG | - | chr2_4:9170335-9170354 | Msa0313730:CDS | 35.0% | |
| ACAGCAGCATAGCAAACAAA+TGG | - | chr2_4:9168083-9168102 | Msa0313730:three_prime_UTR | 40.0% | |
| AACAAATGGCAACAACTCAG+CGG | - | chr2_4:9168097-9168116 | Msa0313730:three_prime_UTR | 40.0% | |
| GTCGTAGATCAATGTCAAGA+GGG | + | chr2_4:9168150-9168169 | None:intergenic | 40.0% | |
| CGACGTTACATAATCCACTA+TGG | - | chr2_4:9168166-9168185 | Msa0313730:CDS | 40.0% | |
| !! | GAGAAAGCATCAAAGTTTGC+AGG | - | chr2_4:9168226-9168245 | Msa0313730:CDS | 40.0% |
| CAAAGTTTGCAGGTAGTTGT+AGG | - | chr2_4:9168236-9168255 | Msa0313730:CDS | 40.0% | |
| GACTTCCGAAATCAATGTTC+CGG | - | chr2_4:9168342-9168361 | Msa0313730:CDS | 40.0% | |
| ATCTAGAGAAGCTTGGAGTA+AGG | - | chr2_4:9168387-9168406 | Msa0313730:CDS | 40.0% | |
| TTGCTGTGGCTAATGATGAA+GGG | - | chr2_4:9168431-9168450 | Msa0313730:CDS | 40.0% | |
| TGATGAAGGGAAAGATGTGT+TGG | - | chr2_4:9168444-9168463 | Msa0313730:CDS | 40.0% | |
| GATGAAGGGAAAGATGTGTT+GGG | - | chr2_4:9168445-9168464 | Msa0313730:CDS | 40.0% | |
| ATGAAGGGAAAGATGTGTTG+GGG | - | chr2_4:9168446-9168465 | Msa0313730:CDS | 40.0% | |
| GAGAGGAACGATACAAACTT+TGG | - | chr2_4:9168492-9168511 | Msa0313730:CDS | 40.0% | |
| ATCCTAAAGTGCATCAAGGT+TGG | - | chr2_4:9168587-9168606 | Msa0313730:CDS | 40.0% | |
| TACCAACCTTGATGCACTTT+AGG | + | chr2_4:9168592-9168611 | None:intergenic | 40.0% | |
| TTCAAAGTTTGGCAACCAGA+TGG | + | chr2_4:9168834-9168853 | None:intergenic | 40.0% | |
| GGCCAATCTAACACATTTGT+AGG | + | chr2_4:9169457-9169476 | None:intergenic | 40.0% | |
| !! | ATGTGTTAGATTGGCCTACA+TGG | - | chr2_4:9169461-9169480 | Msa0313730:intron | 40.0% |
| ATTTGTGCAGGTCTTAAGTG+AGG | - | chr2_4:9169775-9169794 | Msa0313730:intron | 40.0% | |
| GCAGTGGACATTGTTACAAA+TGG | - | chr2_4:9169887-9169906 | Msa0313730:CDS | 40.0% | |
| GCAAATACTATGGCTGTAAC+TGG | + | chr2_4:9169950-9169969 | None:intergenic | 40.0% | |
| ! | TCTAGGGCTAGCAAATACTA+TGG | + | chr2_4:9169960-9169979 | None:intergenic | 40.0% |
| AGTTTGTGTCACCAACTCTA+GGG | + | chr2_4:9169976-9169995 | None:intergenic | 40.0% | |
| AAGTTTGTGTCACCAACTCT+AGG | + | chr2_4:9169977-9169996 | None:intergenic | 40.0% | |
| ATGGAGGGTTGTAGAGAATA+AGG | - | chr2_4:9170306-9170325 | Msa0313730:CDS | 40.0% | |
| TGGAGGGTTGTAGAGAATAA+GGG | - | chr2_4:9170307-9170326 | Msa0313730:CDS | 40.0% | |
| GGTTGTAGAGAATAAGGGTA+TGG | - | chr2_4:9170312-9170331 | Msa0313730:CDS | 40.0% | |
| GGTATGGTTCAACAATCAGA+TGG | - | chr2_4:9170328-9170347 | Msa0313730:CDS | 40.0% | |
| AGATGGTTCATGGAAGCTTA+TGG | - | chr2_4:9170345-9170364 | Msa0313730:CDS | 40.0% | |
| ATGGAAGCTTATGGATCATG+AGG | - | chr2_4:9170354-9170373 | Msa0313730:CDS | 40.0% | |
| ! | GCTATGCTGCTGTTGTTGTT+TGG | + | chr2_4:9168076-9168095 | None:intergenic | 45.0% |
| AACTCAGCGGCGAAAATCAT+TGG | - | chr2_4:9168110-9168129 | Msa0313730:exon | 45.0% | |
| AGCGGCGAAAATCATTGGAT+AGG | - | chr2_4:9168115-9168134 | Msa0313730:exon | 45.0% | |
| CGTCGTAGATCAATGTCAAG+AGG | + | chr2_4:9168151-9168170 | None:intergenic | 45.0% | |
| !! | CTTGTGCCATTTCACCATAG+TGG | + | chr2_4:9168183-9168202 | None:intergenic | 45.0% |
| !! | CGCTTCCGGAACATTGATTT+CGG | + | chr2_4:9168350-9168369 | None:intergenic | 45.0% |
| !! | TTGGATTGGGTTTGTTGCTG+TGG | - | chr2_4:9168417-9168436 | Msa0313730:CDS | 45.0% |
| GTTGCTGTGGCTAATGATGA+AGG | - | chr2_4:9168430-9168449 | Msa0313730:CDS | 45.0% | |
| GAAAGATGTGTTGGGGAGAA+GGG | - | chr2_4:9168453-9168472 | Msa0313730:CDS | 45.0% | |
| TTGTGTATTACGTGGGTCCA+AGG | - | chr2_4:9168992-9169011 | Msa0313730:intron | 45.0% | |
| TGTGTATTACGTGGGTCCAA+GGG | - | chr2_4:9168993-9169012 | Msa0313730:intron | 45.0% | |
| ! | GGAGGTCTAAAACAAGGGTT+TGG | + | chr2_4:9169028-9169047 | None:intergenic | 45.0% |
| AGGTCTTAAGTGAGGTGAGA+AGG | - | chr2_4:9169783-9169802 | Msa0313730:intron | 45.0% | |
| CTTAAGTGAGGTGAGAAGGT+TGG | - | chr2_4:9169787-9169806 | Msa0313730:intron | 45.0% | |
| ! | GTATTTGCTAGCCCTAGAGT+TGG | - | chr2_4:9169962-9169981 | Msa0313730:CDS | 45.0% |
| AATACCTTGTGCCAGTGTCA+TGG | - | chr2_4:9170287-9170306 | Msa0313730:CDS | 45.0% | |
| GGAAAGATGTGTTGGGGAGA+AGG | - | chr2_4:9168452-9168471 | Msa0313730:CDS | 50.0% | |
| !! | CGGGCACTGGTCTTATTGAA+GGG | + | chr2_4:9168646-9168665 | None:intergenic | 50.0% |
| !! | TCGGGCACTGGTCTTATTGA+AGG | + | chr2_4:9168647-9168666 | None:intergenic | 50.0% |
| ATTTACCTGGTTTCGGGCAC+TGG | + | chr2_4:9168659-9168678 | None:intergenic | 50.0% | |
| ATGACATTGTTGCGGCATGC+TGG | + | chr2_4:9169135-9169154 | None:intergenic | 50.0% | |
| AAGTGAGGTGAGAAGGTTGG+TGG | - | chr2_4:9169790-9169809 | Msa0313730:intron | 50.0% | |
| GGAGGCTTATTTGCATGGAG+TGG | - | chr2_4:9170174-9170193 | Msa0313730:CDS | 50.0% | |
| GCTTATTTGCATGGAGTGGC+AGG | - | chr2_4:9170178-9170197 | Msa0313730:CDS | 50.0% | |
| ATGGAGTGGCAGGAACACAA+GGG | - | chr2_4:9170188-9170207 | Msa0313730:CDS | 50.0% | |
| TCTACAACCCTCCATGACAC+TGG | + | chr2_4:9170301-9170320 | None:intergenic | 50.0% | |
| TAAGACCAGTGCCCGAAACC+AGG | - | chr2_4:9168651-9168670 | Msa0313730:CDS | 55.0% | |
| ACATTGTTGCGGCATGCTGG+TGG | + | chr2_4:9169132-9169151 | None:intergenic | 55.0% | |
| CATGGAGTGGCAGGAACACA+AGG | - | chr2_4:9170187-9170206 | Msa0313730:CDS | 55.0% | |
| ACCTTGTGCCAGTGTCATGG+AGG | - | chr2_4:9170290-9170309 | Msa0313730:CDS | 55.0% | |
| CCTTGTGCCAGTGTCATGGA+GGG | - | chr2_4:9170291-9170310 | Msa0313730:CDS | 55.0% | |
| ACGTGGGTCCAAGGGTGAAG+CGG | - | chr2_4:9169001-9169020 | Msa0313730:intron | 60.0% | |
| ! | GGTTTGGTCCGCTTCACCCT+TGG | + | chr2_4:9169012-9169031 | None:intergenic | 60.0% |
| CCCTCCATGACACTGGCACA+AGG | + | chr2_4:9170294-9170313 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_4 | gene | 9168003 | 9170505 | 9168003 | ID=Msa0313730;Name=Msa0313730 |
| chr2_4 | mRNA | 9168003 | 9170505 | 9168003 | ID=Msa0313730-mRNA-1;Parent=Msa0313730;Name=Msa0313730-mRNA-1;_AED=0.00;_eAED=0.00;_QI=31|1|1|1|1|1|2|115|414 |
| chr2_4 | exon | 9168003 | 9168723 | 9168003 | ID=Msa0313730-mRNA-1:exon:3549;Parent=Msa0313730-mRNA-1 |
| chr2_4 | exon | 9169836 | 9170505 | 9169836 | ID=Msa0313730-mRNA-1:exon:3548;Parent=Msa0313730-mRNA-1 |
| chr2_4 | five_prime_UTR | 9170475 | 9170505 | 9170475 | ID=Msa0313730-mRNA-1:five_prime_utr;Parent=Msa0313730-mRNA-1 |
| chr2_4 | CDS | 9169836 | 9170474 | 9169836 | ID=Msa0313730-mRNA-1:cds;Parent=Msa0313730-mRNA-1 |
| chr2_4 | CDS | 9168118 | 9168723 | 9168118 | ID=Msa0313730-mRNA-1:cds;Parent=Msa0313730-mRNA-1 |
| chr2_4 | three_prime_UTR | 9168003 | 9168117 | 9168003 | ID=Msa0313730-mRNA-1:three_prime_utr;Parent=Msa0313730-mRNA-1 |
| Gene Sequence |
| Protein sequence |
