AlfalfaGEDB | Msa0192910

M. sativa cultivar zhongmu-4 / Msa0192910

KEGG: -
GO: GO:0003674 GO:0003824 GO:0004620 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006629 GO:0006638 GO:0006639 GO:0008150 GO:0008152 GO:0008970 GO:0009056 GO:0009987 GO:0010029 GO:0010187 GO:0010876 GO:0016042 GO:0016298 GO:0016787 GO:0016788 GO:0019915 GO:0033036 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044255 GO:0044424 GO:0044464 GO:0046339 GO:0046340 GO:0046461 GO:0046462 GO:0046464 GO:0046486 GO:0046503 GO:0047372 GO:0048519 GO:0048580 GO:0048581 GO:0050789 GO:0050793 GO:0051093 GO:0051179 GO:0051235 GO:0051239 GO:0051241 GO:0052651 GO:0052689 GO:0065007 GO:0065008 GO:0071704 GO:1900140 GO:1901575 GO:2000026
PFAM: PF01764.28

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0192910	XP_003593747.2	97.101	414	12	0	1	414	20	433	0.0	829

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0192910	sp\|O49523\|DSEL_ARATH	61.713	397	147	3	20	413	19	413	0.0	523

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0192910	A0A396J2K2	97.101	414	12	0	1	414	20	433	0.0	829

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0036890	Msa0192910	0.820978	5.155249e-53	-8.615850e-47
Msa0077340	Msa0192910	0.802523	5.387786e-49	-8.615850e-47
Msa0084970	Msa0192910	0.821345	4.242899e-53	-8.615850e-47
Msa0140880	Msa0192910	0.801512	8.696624e-49	-8.615850e-47
Msa0176900	Msa0192910	0.804600	1.998724e-49	-8.615850e-47
Msa0192910	Msa0235110	0.964886	6.783371e-124	-8.615850e-47
Msa0192910	Msa0273500	0.918915	8.637308e-87	-8.615850e-47
Msa0192910	Msa0288620	0.818732	1.680712e-52	-8.615850e-47
Msa0192910	Msa0313730	0.913607	5.057370e-84	-8.615850e-47
Msa0192910	Msa0427700	0.816102	6.574020e-52	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0192910	MtrunA17_Chr2g0283561	97.101	414	12	0	1	414	20	433	0.0	829
Msa0192910	MtrunA17_Chr4g0046001	62.374	396	141	4	19	412	12	401	8.55e-178	501
Msa0192910	MtrunA17_Chr4g0046011	61.364	396	145	4	19	412	3	392	2.31e-175	495
Msa0192910	MtrunA17_Chr4g0041311	47.044	406	180	5	24	404	32	427	6.69e-124	366
Msa0192910	MtrunA17_Chr4g0039301	43.489	407	197	8	20	404	100	495	1.65e-105	322
Msa0192910	MtrunA17_Chr7g0260671	40.714	420	221	6	8	406	62	474	3.89e-102	312
Msa0192910	MtrunA17_Chr7g0260681	40.113	354	184	6	20	352	74	420	1.23e-82	259
Msa0192910	MtrunA17_Chr5g0399641	34.375	384	195	9	20	369	135	495	2.51e-61	207
Msa0192910	MtrunA17_Chr7g0250611	36.712	365	185	15	19	361	74	414	4.01e-56	190
Msa0192910	MtrunA17_Chr7g0214711	35.143	350	179	10	20	347	105	428	7.42e-54	186

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0192910	AT4G18550.2	61.713	397	147	3	20	413	36	430	0.0	523
Msa0192910	AT4G18550.1	61.713	397	147	3	20	413	19	413	0.0	523
Msa0192910	AT1G06250.1	52.685	391	178	2	20	406	5	392	9.02e-152	436
Msa0192910	AT4G18550.3	61.649	279	104	2	20	297	36	312	4.71e-127	370
Msa0192910	AT2G42690.1	44.096	415	203	5	18	412	2	407	4.33e-112	335
Msa0192910	AT1G06800.1	42.476	412	199	10	20	404	85	485	4.98e-102	313
Msa0192910	AT1G51440.1	43.468	421	195	11	19	408	86	494	2.36e-100	308
Msa0192910	AT1G06250.2	51.601	281	129	2	130	406	1	278	3.38e-100	301
Msa0192910	AT2G30550.2	40.380	421	214	10	10	404	91	500	5.41e-97	300
Msa0192910	AT1G06800.2	41.274	361	174	10	20	353	85	434	2.04e-84	265

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Find 96 sgRNAs with CRISPR-Local

Find 163 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AACAAATGGCAACAACTCAG+CGG	0.706384	2_1:-8702510	Msa0192910:CDS
AACATAGATTTACCTGGTTT+CGG	0.276273	2_1:+8701944	None:intergenic
AACGATACAAACTTTGGAAT+GGG	0.445770	2_1:-8702109	Msa0192910:CDS
AACTCAGCGGCGAAAATCAT+TGG	0.405365	2_1:-8702497	Msa0192910:CDS
AAGTGAGGTGAGAAGGTTGG+TGG	0.515539	2_1:-8700819	Msa0192910:CDS
AAGTTTGTGTCACCAACTCT+AGG	0.461380	2_1:+8700635	None:intergenic
AATACCTTGTGCCAGTGTCA+TGG	0.585230	2_1:-8700322	Msa0192910:CDS
AATGATCCTAAAGTGCATCA+AGG	0.597945	2_1:-8702024	Msa0192910:CDS
AATTGCAACTCTAAATGCAG+TGG	0.688195	2_1:-8700738	Msa0192910:CDS
AATTTGGAGGCTTATTTGCA+TGG	0.495411	2_1:-8700440	Msa0192910:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GACTTTATAATAAACGCTTC+CGG	+	chr2_1:8700380-8700399	None:intergenic	30.0%
AGTAAGGAATCAAATTGGAT+TGG	-	chr2_1:8700419-8700438	Msa0192910:CDS	30.0%
GTAAGGAATCAAATTGGATT+GGG	-	chr2_1:8700420-8700439	Msa0192910:CDS	30.0%
CTGCTATTACCAAATACTTT+AGG	+	chr2_1:8700572-8700591	None:intergenic	30.0%
AACATAGATTTACCTGGTTT+CGG	+	chr2_1:8700682-8700701	None:intergenic	30.0%
AACCAGATGGTTTATGAAAA+AGG	+	chr2_1:8700837-8700856	None:intergenic	30.0%
CCAAAAATATGACATTGTTG+CGG	+	chr2_1:8701160-8701179	None:intergenic	30.0%
TAGTGGTAAGAATTCAACTT+AGG	-	chr2_1:8701698-8701717	Msa0192910:intron	30.0%
AGAATTCAACTTAGGTAACA+TGG	-	chr2_1:8701706-8701725	Msa0192910:intron	30.0%
TGCACTTGTGAATAAAACAT+TGG	-	chr2_1:8702263-8702282	Msa0192910:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2_1	gene	8700019	8702626	8700019	ID=Msa0192910;Name=Msa0192910
chr2_1	mRNA	8700019	8702626	8700019	ID=Msa0192910-mRNA-1;Parent=Msa0192910;Name=Msa0192910-mRNA-1;_AED=0.00;_eAED=0.00;_QI=31\|1\|1\|1\|1\|1\|2\|222\|414
chr2_1	exon	8700019	8700846	8700019	ID=Msa0192910-mRNA-1:exon:4018;Parent=Msa0192910-mRNA-1
chr2_1	exon	8701957	8702626	8701957	ID=Msa0192910-mRNA-1:exon:4017;Parent=Msa0192910-mRNA-1
chr2_1	five_prime_UTR	8702596	8702626	8702596	ID=Msa0192910-mRNA-1:five_prime_utr;Parent=Msa0192910-mRNA-1
chr2_1	CDS	8701957	8702595	8701957	ID=Msa0192910-mRNA-1:cds;Parent=Msa0192910-mRNA-1
chr2_1	CDS	8700241	8700846	8700241	ID=Msa0192910-mRNA-1:cds;Parent=Msa0192910-mRNA-1
chr2_1	three_prime_UTR	8700019	8700240	8700019	ID=Msa0192910-mRNA-1:three_prime_utr;Parent=Msa0192910-mRNA-1

Gene Sequence

>Msa0192910

ATGATCAAAAGGTGGAGAAACAATTTGAAGAAGAAGAAACCAAACAACAACAGCAGCATAGCAAACAAATGGCAACAACTCAGCGGCGAAAATCATTGGATAGGACTATTAGACCCTCTTGACATTGATCTACGACGTTACATAATCCACTATGGTGAAATGGCACAAGCAACATACGATGCTTTCAACACAGAGAAAGCATCAAAGTTTGCAGGTAGTTGTAGGTATGCAAAGAATGATTTCTTTTCTAAAGTTTTTTTAGAAAATGGAAATCCTTTTAAATATTCTGTAACAAAATTTATTTATGCGACTTCCGAAATCAATGTTCCGGAAGCGTTTATTATAAAGTCTTTATCTAGAGAAGCTTGGAGTAAGGAATCAAATTGGATTGGGTTTGTTGCTGTGGCTAATGATGAAGGGAAAGATGTGTTGGGGAGAAGGGATATTGTTATTGCTTGGAGAGGAACGATACAAACTTTGGAATGGGTTAATGATCTTCAGTTTCTTTTGGTTTCTGCTCCTAAAGTATTTGGTAATAGCAGTAATATTAATGATCCTAAAGTGCATCAAGGTTGGTACTCCATTTATACTTCTGAAGATCCAAAATCTCCCTTCAATAAGACCAGTGCCCGAAACCAGGTCTTAAGTGAGGTGAGAAGGTTGGTGGAGAAATACAAGAATGAAGAAATAAGCATAACTATAACAGGTCACAGTTTAGGTGCTGCAATTGCAACTCTAAATGCAGTGGACATTGTTACAAATGGTTATAACAAGTCAAGAGATTCATCTCTTAAAGCATCACCAGTTACAGCCATAGTATTTGCTAGCCCTAGAGTTGGTGACACAAACTTTCAAAAGCTTTTTTCTAGCTACAAAGATCTTTCAACATTACGCATTCGAAATGAGTTAGATATTGTTCCAAACTACCCTTTTATTGGGTATGCAGATGTTGGTGAAGAGTTGAAAATTGACACAAGAAAATCTATGTATTTGAAGAGTCCAGGGAATATTTTAAGTTGGCATAATTTGGAGGCTTATTTGCATGGAGTGGCAGGAACACAAGGGAGTAAAAGAGTATTCAAACTTGAAGTTTGTCGTGATATTGCACTTGTGAATAAAACATTGGATGGTTTAAAAGATGAATACCTTGTGCCAGTGTCATGGAGGGTTGTAGAGAATAAGGGTATGGTTCAACAATCAGATGGTTCATGGAAGCTTATGGATCATGAGGATGACGAATTTTAA

Protein sequence

>Msa0192910

MIKRWRNNLKKKKPNNNSSIANKWQQLSGENHWIGLLDPLDIDLRRYIIHYGEMAQATYDAFNTEKASKFAGSCRYAKNDFFSKVFLENGNPFKYSVTKFIYATSEINVPEAFIIKSLSREAWSKESNWIGFVAVANDEGKDVLGRRDIVIAWRGTIQTLEWVNDLQFLLVSAPKVFGNSSNINDPKVHQGWYSIYTSEDPKSPFNKTSARNQVLSEVRRLVEKYKNEEISITITGHSLGAAIATLNAVDIVTNGYNKSRDSSLKASPVTAIVFASPRVGDTNFQKLFSSYKDLSTLRIRNELDIVPNYPFIGYADVGEELKIDTRKSMYLKSPGNILSWHNLEAYLHGVAGTQGSKRVFKLEVCRDIALVNKTLDGLKDEYLVPVSWRVVENKGMVQQSDGSWKLMDHEDDEF*