Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0192910 | XP_003593747.2 | 97.101 | 414 | 12 | 0 | 1 | 414 | 20 | 433 | 0.0 | 829 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0192910 | sp|O49523|DSEL_ARATH | 61.713 | 397 | 147 | 3 | 20 | 413 | 19 | 413 | 0.0 | 523 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0192910 | A0A396J2K2 | 97.101 | 414 | 12 | 0 | 1 | 414 | 20 | 433 | 0.0 | 829 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0036890 | Msa0192910 | 0.820978 | 5.155249e-53 | -8.615850e-47 |
| Msa0077340 | Msa0192910 | 0.802523 | 5.387786e-49 | -8.615850e-47 |
| Msa0084970 | Msa0192910 | 0.821345 | 4.242899e-53 | -8.615850e-47 |
| Msa0140880 | Msa0192910 | 0.801512 | 8.696624e-49 | -8.615850e-47 |
| Msa0176900 | Msa0192910 | 0.804600 | 1.998724e-49 | -8.615850e-47 |
| Msa0192910 | Msa0235110 | 0.964886 | 6.783371e-124 | -8.615850e-47 |
| Msa0192910 | Msa0273500 | 0.918915 | 8.637308e-87 | -8.615850e-47 |
| Msa0192910 | Msa0288620 | 0.818732 | 1.680712e-52 | -8.615850e-47 |
| Msa0192910 | Msa0313730 | 0.913607 | 5.057370e-84 | -8.615850e-47 |
| Msa0192910 | Msa0427700 | 0.816102 | 6.574020e-52 | -8.615850e-47 |
| Msa0192910 | Msa0567380 | 0.800611 | 1.328938e-48 | -8.615850e-47 |
| Msa0192910 | Msa0568800 | 0.817615 | 3.008990e-52 | -8.615850e-47 |
| Msa0192910 | Msa0612350 | 0.818735 | 1.678665e-52 | -8.615850e-47 |
| Msa0192910 | Msa0626270 | 0.805064 | 1.598814e-49 | -8.615850e-47 |
| Msa0192910 | Msa0626460 | 0.810326 | 1.218816e-50 | -8.615850e-47 |
| Msa0192910 | Msa0664540 | 0.813126 | 2.996330e-51 | -8.615850e-47 |
| Msa0192910 | Msa0687580 | 0.831683 | 1.453042e-55 | -8.615850e-47 |
| Msa0192910 | Msa0693340 | -0.801266 | 9.765775e-49 | -8.615850e-47 |
| Msa0192910 | Msa0702720 | 0.805896 | 1.069537e-49 | -8.615850e-47 |
| Msa0192910 | Msa0782750 | 0.800943 | 1.136973e-48 | -8.615850e-47 |
| Msa0192910 | Msa0869280 | 0.800669 | 1.292855e-48 | -8.615850e-47 |
| Msa0192910 | Msa0933760 | 0.808827 | 2.557285e-50 | -8.615850e-47 |
| Msa0192910 | Msa0971650 | 0.801036 | 1.088094e-48 | -8.615850e-47 |
| Msa0192910 | Msa1074890 | 0.812647 | 3.815383e-51 | -8.615850e-47 |
| Msa0192910 | Msa1115740 | 0.832484 | 9.205557e-56 | -8.615850e-47 |
| Msa0192910 | Msa1161810 | 0.806472 | 8.091831e-50 | -8.615850e-47 |
| Msa0192910 | Msa1340200 | 0.812596 | 3.914793e-51 | -8.615850e-47 |
| Msa0192910 | Msa1341840 | 0.808529 | 2.962129e-50 | -8.615850e-47 |
| Msa0192910 | Msa1382710 | 0.821096 | 4.841511e-53 | -8.615850e-47 |
| Msa0192910 | Msa1440900 | 0.801603 | 8.329979e-49 | -8.615850e-47 |
| Msa0192910 | Msa1459360 | 0.832731 | 7.994748e-56 | -8.615850e-47 |
| Msa0192910 | Msa1461370 | 0.813433 | 2.565910e-51 | -8.615850e-47 |
| Msa0192910 | Msa1464090 | 0.819741 | 9.902499e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0192910 | MtrunA17_Chr2g0283561 | 97.101 | 414 | 12 | 0 | 1 | 414 | 20 | 433 | 0.0 | 829 |
| Msa0192910 | MtrunA17_Chr4g0046001 | 62.374 | 396 | 141 | 4 | 19 | 412 | 12 | 401 | 8.55e-178 | 501 |
| Msa0192910 | MtrunA17_Chr4g0046011 | 61.364 | 396 | 145 | 4 | 19 | 412 | 3 | 392 | 2.31e-175 | 495 |
| Msa0192910 | MtrunA17_Chr4g0041311 | 47.044 | 406 | 180 | 5 | 24 | 404 | 32 | 427 | 6.69e-124 | 366 |
| Msa0192910 | MtrunA17_Chr4g0039301 | 43.489 | 407 | 197 | 8 | 20 | 404 | 100 | 495 | 1.65e-105 | 322 |
| Msa0192910 | MtrunA17_Chr7g0260671 | 40.714 | 420 | 221 | 6 | 8 | 406 | 62 | 474 | 3.89e-102 | 312 |
| Msa0192910 | MtrunA17_Chr7g0260681 | 40.113 | 354 | 184 | 6 | 20 | 352 | 74 | 420 | 1.23e-82 | 259 |
| Msa0192910 | MtrunA17_Chr5g0399641 | 34.375 | 384 | 195 | 9 | 20 | 369 | 135 | 495 | 2.51e-61 | 207 |
| Msa0192910 | MtrunA17_Chr7g0250611 | 36.712 | 365 | 185 | 15 | 19 | 361 | 74 | 414 | 4.01e-56 | 190 |
| Msa0192910 | MtrunA17_Chr7g0214711 | 35.143 | 350 | 179 | 10 | 20 | 347 | 105 | 428 | 7.42e-54 | 186 |
| Msa0192910 | MtrunA17_Chr7g0250561 | 35.222 | 406 | 196 | 15 | 14 | 370 | 63 | 450 | 1.47e-52 | 182 |
| Msa0192910 | MtrunA17_Chr4g0055691 | 33.071 | 381 | 197 | 9 | 19 | 369 | 128 | 480 | 1.20e-49 | 176 |
| Msa0192910 | MtrunA17_Chr2g0286301 | 31.319 | 182 | 90 | 8 | 131 | 310 | 89 | 237 | 8.06e-14 | 72.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0192910 | AT4G18550.2 | 61.713 | 397 | 147 | 3 | 20 | 413 | 36 | 430 | 0.0 | 523 |
| Msa0192910 | AT4G18550.1 | 61.713 | 397 | 147 | 3 | 20 | 413 | 19 | 413 | 0.0 | 523 |
| Msa0192910 | AT1G06250.1 | 52.685 | 391 | 178 | 2 | 20 | 406 | 5 | 392 | 9.02e-152 | 436 |
| Msa0192910 | AT4G18550.3 | 61.649 | 279 | 104 | 2 | 20 | 297 | 36 | 312 | 4.71e-127 | 370 |
| Msa0192910 | AT2G42690.1 | 44.096 | 415 | 203 | 5 | 18 | 412 | 2 | 407 | 4.33e-112 | 335 |
| Msa0192910 | AT1G06800.1 | 42.476 | 412 | 199 | 10 | 20 | 404 | 85 | 485 | 4.98e-102 | 313 |
| Msa0192910 | AT1G51440.1 | 43.468 | 421 | 195 | 11 | 19 | 408 | 86 | 494 | 2.36e-100 | 308 |
| Msa0192910 | AT1G06250.2 | 51.601 | 281 | 129 | 2 | 130 | 406 | 1 | 278 | 3.38e-100 | 301 |
| Msa0192910 | AT2G30550.2 | 40.380 | 421 | 214 | 10 | 10 | 404 | 91 | 500 | 5.41e-97 | 300 |
| Msa0192910 | AT1G06800.2 | 41.274 | 361 | 174 | 10 | 20 | 353 | 85 | 434 | 2.04e-84 | 265 |
| Msa0192910 | AT1G30370.1 | 37.857 | 420 | 226 | 8 | 6 | 404 | 100 | 505 | 1.43e-83 | 265 |
| Msa0192910 | AT2G30550.1 | 39.566 | 369 | 186 | 10 | 10 | 352 | 91 | 448 | 1.06e-81 | 258 |
| Msa0192910 | AT2G44810.2 | 36.148 | 379 | 179 | 13 | 20 | 361 | 86 | 438 | 8.46e-61 | 204 |
| Msa0192910 | AT2G44810.1 | 36.757 | 370 | 171 | 13 | 29 | 361 | 5 | 348 | 2.41e-59 | 197 |
| Msa0192910 | AT4G16820.1 | 35.602 | 382 | 187 | 8 | 18 | 368 | 125 | 478 | 7.16e-58 | 197 |
| Msa0192910 | AT1G05800.1 | 34.699 | 366 | 198 | 9 | 12 | 357 | 72 | 416 | 2.68e-55 | 190 |
| Msa0192910 | AT2G31690.1 | 34.770 | 348 | 189 | 7 | 20 | 347 | 88 | 417 | 2.84e-54 | 187 |
| Msa0192910 | AT5G18640.5 | 32.927 | 164 | 83 | 6 | 149 | 310 | 100 | 238 | 1.09e-14 | 74.7 |
| Msa0192910 | AT5G18640.1 | 32.927 | 164 | 83 | 6 | 149 | 310 | 100 | 238 | 2.31e-14 | 74.3 |
| Msa0192910 | AT5G18640.3 | 32.927 | 164 | 83 | 6 | 149 | 310 | 100 | 238 | 2.31e-14 | 74.3 |
| Msa0192910 | AT5G18640.4 | 31.868 | 182 | 90 | 7 | 131 | 310 | 101 | 250 | 2.47e-14 | 74.3 |
| Msa0192910 | AT5G18640.2 | 31.868 | 182 | 90 | 7 | 131 | 310 | 101 | 250 | 2.47e-14 | 74.3 |
Find 96 sgRNAs with CRISPR-Local
Find 163 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTCTTATTGAAGGGAGATTT+TGG | 0.169096 | 2_1:+8701973 | None:intergenic |
| GTTTCTGCTCCTAAAGTATT+TGG | 0.175913 | 2_1:-8702063 | Msa0192910:CDS |
| ACATCTGCATACCCAATAAA+AGG | 0.189119 | 2_1:+8700536 | None:intergenic |
| ATGGAGGGTTGTAGAGAATA+AGG | 0.217063 | 2_1:-8700303 | Msa0192910:CDS |
| ACATAGATTTACCTGGTTTC+GGG | 0.243614 | 2_1:+8701945 | None:intergenic |
| TGGATCTTCAGAAGTATAAA+TGG | 0.266518 | 2_1:+8701993 | None:intergenic |
| AACATAGATTTACCTGGTTT+CGG | 0.276273 | 2_1:+8701944 | None:intergenic |
| TAATGATCTTCAGTTTCTTT+TGG | 0.277450 | 2_1:-8702085 | Msa0192910:CDS |
| CTGCTATTACCAAATACTTT+AGG | 0.283364 | 2_1:+8702054 | None:intergenic |
| TTTGTTACAGAATATTTAAA+AGG | 0.323206 | 2_1:+8702300 | None:intergenic |
| TACCAACCTTGATGCACTTT+AGG | 0.338088 | 2_1:+8702018 | None:intergenic |
| CTTGGAGTAAGGAATCAAAT+TGG | 0.342591 | 2_1:-8702209 | Msa0192910:CDS |
| TACCCAATAAAAGGGTAGTT+TGG | 0.342990 | 2_1:+8700545 | None:intergenic |
| TATAATTGAGAATTTATTCA+TGG | 0.362934 | 2_1:-8700207 | Msa0192910:three_prime_UTR |
| CGCTTCCGGAACATTGATTT+CGG | 0.366404 | 2_1:+8702260 | None:intergenic |
| TATGAACATTATTGTATGTT+TGG | 0.369024 | 2_1:-8700047 | Msa0192910:three_prime_UTR |
| ATTTACCTGGTTTCGGGCAC+TGG | 0.370820 | 2_1:+8701951 | None:intergenic |
| AGATGGTTCATGGAAGCTTA+TGG | 0.372107 | 2_1:-8700264 | Msa0192910:CDS |
| GCTATGCTGCTGTTGTTGTT+TGG | 0.373108 | 2_1:+8702534 | None:intergenic |
| GAAGGGATATTGTTATTGCT+TGG | 0.374037 | 2_1:-8702137 | Msa0192910:CDS |
| GAAATAAGCATAACTATAAC+AGG | 0.376230 | 2_1:-8700779 | Msa0192910:CDS |
| ACTATAACAGGTCACAGTTT+AGG | 0.384060 | 2_1:-8700767 | Msa0192910:CDS |
| CATAATCCACTATGGTGAAA+TGG | 0.388866 | 2_1:-8702433 | Msa0192910:CDS |
| CAAAGTTTGCAGGTAGTTGT+AGG | 0.393065 | 2_1:-8702371 | Msa0192910:CDS |
| TCGGGCACTGGTCTTATTGA+AGG | 0.398715 | 2_1:+8701963 | None:intergenic |
| AACTCAGCGGCGAAAATCAT+TGG | 0.405365 | 2_1:-8702497 | Msa0192910:CDS |
| TTGTATGTTTGGCCCTCCTT+TGG | 0.405487 | 2_1:-8700036 | Msa0192910:three_prime_UTR |
| GGAAAGATGTGTTGGGGAGA+AGG | 0.411910 | 2_1:-8702155 | Msa0192910:CDS |
| GACTTTATAATAAACGCTTC+CGG | 0.415146 | 2_1:+8702246 | None:intergenic |
| GTAAGGAATCAAATTGGATT+GGG | 0.415930 | 2_1:-8702203 | Msa0192910:CDS |
| AGTAAGGAATCAAATTGGAT+TGG | 0.423060 | 2_1:-8702204 | Msa0192910:CDS |
| GCTTATTTGCATGGAGTGGC+AGG | 0.430370 | 2_1:-8700431 | Msa0192910:CDS |
| TCTAGGGCTAGCAAATACTA+TGG | 0.437648 | 2_1:+8700652 | None:intergenic |
| GCAAATACTATGGCTGTAAC+TGG | 0.439803 | 2_1:+8700662 | None:intergenic |
| TTCAACAATCAGATGGTTCA+TGG | 0.443571 | 2_1:-8700274 | Msa0192910:CDS |
| AACGATACAAACTTTGGAAT+GGG | 0.445770 | 2_1:-8702109 | Msa0192910:CDS |
| GACTTCCGAAATCAATGTTC+CGG | 0.446184 | 2_1:-8702265 | Msa0192910:CDS |
| GAGAAAGCATCAAAGTTTGC+AGG | 0.452694 | 2_1:-8702381 | Msa0192910:CDS |
| ATCTAGAGAAGCTTGGAGTA+AGG | 0.456251 | 2_1:-8702220 | Msa0192910:CDS |
| CGACGTTACATAATCCACTA+TGG | 0.458056 | 2_1:-8702441 | Msa0192910:CDS |
| AAGTTTGTGTCACCAACTCT+AGG | 0.461380 | 2_1:+8700635 | None:intergenic |
| GAAAGATGTGTTGGGGAGAA+GGG | 0.463613 | 2_1:-8702154 | Msa0192910:CDS |
| GCAGTGGACATTGTTACAAA+TGG | 0.466972 | 2_1:-8700722 | Msa0192910:CDS |
| GAGAGGAACGATACAAACTT+TGG | 0.468667 | 2_1:-8702115 | Msa0192910:CDS |
| TCTATGTATTTGAAGAGTCC+AGG | 0.484311 | 2_1:-8700482 | Msa0192910:CDS |
| AATTTGGAGGCTTATTTGCA+TGG | 0.495411 | 2_1:-8700440 | Msa0192910:CDS |
| AGTCTTTATCTAGAGAAGCT+TGG | 0.498976 | 2_1:-8702227 | Msa0192910:CDS |
| TTTAAGTTGGCATAATTTGG+AGG | 0.502108 | 2_1:-8700453 | Msa0192910:CDS |
| TGCCAACTTAAAATATTCCC+TGG | 0.503206 | 2_1:+8700464 | None:intergenic |
| GATGAAGGGAAAGATGTGTT+GGG | 0.510788 | 2_1:-8702162 | Msa0192910:CDS |
| CTTGTGCCATTTCACCATAG+TGG | 0.510988 | 2_1:+8702427 | None:intergenic |
| GAGTAGCAATCATGATCAAA+AGG | 0.511049 | 2_1:-8702584 | Msa0192910:exon |
| TTGGATTGGGTTTGTTGCTG+TGG | 0.511970 | 2_1:-8702190 | Msa0192910:CDS |
| CTTAAGTGAGGTGAGAAGGT+TGG | 0.512596 | 2_1:-8700822 | Msa0192910:CDS |
| AAGTGAGGTGAGAAGGTTGG+TGG | 0.515539 | 2_1:-8700819 | Msa0192910:CDS |
| TGGAGGGTTGTAGAGAATAA+GGG | 0.516398 | 2_1:-8700302 | Msa0192910:CDS |
| GAACGATACAAACTTTGGAA+TGG | 0.518160 | 2_1:-8702110 | Msa0192910:CDS |
| ACAGCAGCATAGCAAACAAA+TGG | 0.523423 | 2_1:-8702524 | Msa0192910:CDS |
| CGGGCACTGGTCTTATTGAA+GGG | 0.526702 | 2_1:+8701964 | None:intergenic |
| GGTTGTAGAGAATAAGGGTA+TGG | 0.529061 | 2_1:-8700297 | Msa0192910:CDS |
| CATCTGCATACCCAATAAAA+GGG | 0.530668 | 2_1:+8700537 | None:intergenic |
| GTTGCTGTGGCTAATGATGA+AGG | 0.534220 | 2_1:-8702177 | Msa0192910:CDS |
| TGATGAAGGGAAAGATGTGT+TGG | 0.535789 | 2_1:-8702163 | Msa0192910:CDS |
| TTTATTGGGTATGCAGATGT+TGG | 0.539197 | 2_1:-8700533 | Msa0192910:CDS |
| CATGGAGTGGCAGGAACACA+AGG | 0.541108 | 2_1:-8700422 | Msa0192910:CDS |
| ATCCTAAAGTGCATCAAGGT+TGG | 0.542256 | 2_1:-8702020 | Msa0192910:CDS |
| TATTAATCAAAGACCAAAGG+AGG | 0.543306 | 2_1:+8700023 | None:intergenic |
| TGCACTTGTGAATAAAACAT+TGG | 0.548353 | 2_1:-8700360 | Msa0192910:CDS |
| CTTGTGAATAAAACATTGGA+TGG | 0.548661 | 2_1:-8700356 | Msa0192910:CDS |
| TAAGACCAGTGCCCGAAACC+AGG | 0.563404 | 2_1:-8701956 | Msa0192910:intron |
| AGGTCTTAAGTGAGGTGAGA+AGG | 0.577836 | 2_1:-8700826 | Msa0192910:CDS |
| TCTACAACCCTCCATGACAC+TGG | 0.578955 | 2_1:+8700311 | None:intergenic |
| AGTTTGTGTCACCAACTCTA+GGG | 0.582592 | 2_1:+8700636 | None:intergenic |
| GTATTTGCTAGCCCTAGAGT+TGG | 0.582655 | 2_1:-8700647 | Msa0192910:CDS |
| AATACCTTGTGCCAGTGTCA+TGG | 0.585230 | 2_1:-8700322 | Msa0192910:CDS |
| CTATGTATTTGAAGAGTCCA+GGG | 0.587725 | 2_1:-8700481 | Msa0192910:CDS |
| GGAGGCTTATTTGCATGGAG+TGG | 0.592309 | 2_1:-8700435 | Msa0192910:CDS |
| GATATTGTTATTGCTTGGAG+AGG | 0.596230 | 2_1:-8702132 | Msa0192910:CDS |
| AATGATCCTAAAGTGCATCA+AGG | 0.597945 | 2_1:-8702024 | Msa0192910:CDS |
| ATTTATTAATCAAAGACCAA+AGG | 0.608405 | 2_1:+8700020 | None:intergenic |
| ATGGAAGCTTATGGATCATG+AGG | 0.613240 | 2_1:-8700255 | Msa0192910:CDS |
| CCCTCCATGACACTGGCACA+AGG | 0.616143 | 2_1:+8700318 | None:intergenic |
| CGTCGTAGATCAATGTCAAG+AGG | 0.622571 | 2_1:+8702459 | None:intergenic |
| ATTAATCAAAGACCAAAGGA+GGG | 0.624748 | 2_1:+8700024 | None:intergenic |
| GTCGTAGATCAATGTCAAGA+GGG | 0.625735 | 2_1:+8702460 | None:intergenic |
| AGCGGCGAAAATCATTGGAT+AGG | 0.626832 | 2_1:-8702492 | Msa0192910:CDS |
| GGTATGGTTCAACAATCAGA+TGG | 0.636286 | 2_1:-8700281 | Msa0192910:CDS |
| ACCTTGTGCCAGTGTCATGG+AGG | 0.647161 | 2_1:-8700319 | Msa0192910:CDS |
| ATTTGTGCAGGTCTTAAGTG+AGG | 0.649606 | 2_1:-8700834 | Msa0192910:intron |
| TAGCAATCATGATCAAAAGG+TGG | 0.653386 | 2_1:-8702581 | Msa0192910:exon |
| TTGCTGTGGCTAATGATGAA+GGG | 0.655838 | 2_1:-8702176 | Msa0192910:CDS |
| ATGAAGGGAAAGATGTGTTG+GGG | 0.669413 | 2_1:-8702161 | Msa0192910:CDS |
| CCTTGTGCCAGTGTCATGGA+GGG | 0.679650 | 2_1:-8700318 | Msa0192910:CDS |
| AATTGCAACTCTAAATGCAG+TGG | 0.688195 | 2_1:-8700738 | Msa0192910:CDS |
| AACAAATGGCAACAACTCAG+CGG | 0.706384 | 2_1:-8702510 | Msa0192910:CDS |
| ATGGAGTGGCAGGAACACAA+GGG | 0.725550 | 2_1:-8700421 | Msa0192910:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAGTATTTTTTTCTTTAAAA+CGG | - | chr2_1:8700701-8700720 | Msa0192910:CDS | 10.0% |
| !! | AACCAAAAAAAATATTAAAT+TGG | - | chr2_1:8701320-8701339 | Msa0192910:intron | 10.0% |
| !!! | AACCAATTTAATATTTTTTT+TGG | + | chr2_1:8701325-8701344 | None:intergenic | 10.0% |
| !! | TAAACAAAAATTTATATTTG+TGG | - | chr2_1:8701644-8701663 | Msa0192910:intron | 10.0% |
| !! | AACACTTTAATTAAAAAAAT+TGG | - | chr2_1:8701733-8701752 | Msa0192910:intron | 10.0% |
| !!! | TCTAAAGTTTTTTTAGAAAA+TGG | - | chr2_1:8700296-8700315 | Msa0192910:CDS | 15.0% |
| !! | TTTGTTACAGAATATTTAAA+AGG | + | chr2_1:8700326-8700345 | None:intergenic | 15.0% |
| !!! | AGTATTTTTTTCTTTAAAAC+GGG | - | chr2_1:8700702-8700721 | Msa0192910:CDS | 15.0% |
| !! | CATAATGAAAAACTAATATA+TGG | + | chr2_1:8700910-8700929 | None:intergenic | 15.0% |
| !!! | TTTTCCTTGATTTTTTTTTT+TGG | + | chr2_1:8701065-8701084 | None:intergenic | 15.0% |
| !! | AAAAAAAAAATCAAGGAAAA+AGG | - | chr2_1:8701065-8701084 | Msa0192910:intron | 15.0% |
| !!! | AGATTATATTAGTTTGATAT+TGG | + | chr2_1:8701546-8701565 | None:intergenic | 15.0% |
| !! | AAAATAAAAATTCAAGTGTT+TGG | - | chr2_1:8701576-8701595 | Msa0192910:intron | 15.0% |
| !! | TATAATTGAGAATTTATTCA+TGG | - | chr2_1:8702416-8702435 | Msa0192910:CDS | 15.0% |
| !!! | TATCATTATTTTTTAGTTTG+AGG | - | chr2_1:8702446-8702465 | Msa0192910:CDS | 15.0% |
| !!! | GTATTTTTTTCTTTAAAACG+GGG | - | chr2_1:8700703-8700722 | Msa0192910:CDS | 20.0% |
| !!! | TATTTTTTTCTTTAAAACGG+GGG | - | chr2_1:8700704-8700723 | Msa0192910:CDS | 20.0% |
| !!! | TGATTTTAGCAGTTAAAATA+TGG | + | chr2_1:8700955-8700974 | None:intergenic | 20.0% |
| !! | TTTAACTGCTAAAATCAATA+TGG | - | chr2_1:8700958-8700977 | Msa0192910:intron | 20.0% |
| !!! | AACCATATTGTTTTTTTCAA+GGG | + | chr2_1:8700989-8701008 | None:intergenic | 20.0% |
| !!! | AAACCATATTGTTTTTTTCA+AGG | + | chr2_1:8700990-8701009 | None:intergenic | 20.0% |
| !! | AGAGAATAATATTAGAAAAG+AGG | - | chr2_1:8701123-8701142 | Msa0192910:intron | 20.0% |
| !!! | TATATGACTATTTCTTTAGT+TGG | + | chr2_1:8701388-8701407 | None:intergenic | 20.0% |
| !!! | TCTTATTTACAAGTTTATTG+TGG | - | chr2_1:8701412-8701431 | Msa0192910:intron | 20.0% |
| !!! | AAATGATTGATTAGTTGTTA+AGG | - | chr2_1:8701603-8701622 | Msa0192910:intron | 20.0% |
| !!! | ATTTTTGTTTATTTGCTTGA+TGG | + | chr2_1:8701635-8701654 | None:intergenic | 20.0% |
| !!! | TATTTTAAGTTGGCATAATT+TGG | - | chr2_1:8702167-8702186 | Msa0192910:CDS | 20.0% |
| !! | TATGAACATTATTGTATGTT+TGG | - | chr2_1:8702576-8702595 | Msa0192910:CDS | 20.0% |
| !! | ATTTATTAATCAAAGACCAA+AGG | + | chr2_1:8702606-8702625 | None:intergenic | 20.0% |
| !! | TAATGATCTTCAGTTTCTTT+TGG | - | chr2_1:8700538-8700557 | Msa0192910:CDS | 25.0% |
| ! | AATACTAACATAGATTTACC+TGG | + | chr2_1:8700688-8700707 | None:intergenic | 25.0% |
| ! | ATGCTCAATAAAGCAAATAT+AGG | - | chr2_1:8700804-8700823 | Msa0192910:CDS | 25.0% |
| ! | CATATATCTCTTTCAAAGTT+TGG | + | chr2_1:8700861-8700880 | None:intergenic | 25.0% |
| ! | TTCCCTTGAAAAAAACAATA+TGG | - | chr2_1:8700984-8701003 | Msa0192910:intron | 25.0% |
| ! | ACCTCCAAAAAAAAAAATCA+AGG | - | chr2_1:8701058-8701077 | Msa0192910:intron | 25.0% |
| !!! | TCCTTGATTTTTTTTTTTGG+AGG | + | chr2_1:8701062-8701081 | None:intergenic | 25.0% |
| !!! | ATATTTTTATCATGTGAGCT+AGG | + | chr2_1:8701211-8701230 | None:intergenic | 25.0% |
| !! | AATAATTTGACCTTTGGAAA+AGG | + | chr2_1:8701356-8701375 | None:intergenic | 25.0% |
| ! | TATGGAAATAATTTGACCTT+TGG | + | chr2_1:8701362-8701381 | None:intergenic | 25.0% |
| !!! | TATTTCTTTAGTTGGTCTTA+TGG | + | chr2_1:8701380-8701399 | None:intergenic | 25.0% |
| ! | AATAATAGTTTAGTCCATGT+AGG | + | chr2_1:8701495-8701514 | None:intergenic | 25.0% |
| ! | GAAATAAGCATAACTATAAC+AGG | - | chr2_1:8701844-8701863 | Msa0192910:intron | 25.0% |
| GACTTTATAATAAACGCTTC+CGG | + | chr2_1:8700380-8700399 | None:intergenic | 30.0% | |
| AGTAAGGAATCAAATTGGAT+TGG | - | chr2_1:8700419-8700438 | Msa0192910:CDS | 30.0% | |
| GTAAGGAATCAAATTGGATT+GGG | - | chr2_1:8700420-8700439 | Msa0192910:CDS | 30.0% | |
| !! | AACGATACAAACTTTGGAAT+GGG | - | chr2_1:8700514-8700533 | Msa0192910:CDS | 30.0% |
| CTGCTATTACCAAATACTTT+AGG | + | chr2_1:8700572-8700591 | None:intergenic | 30.0% | |
| ! | TGGATCTTCAGAAGTATAAA+TGG | + | chr2_1:8700633-8700652 | None:intergenic | 30.0% |
| AACATAGATTTACCTGGTTT+CGG | + | chr2_1:8700682-8700701 | None:intergenic | 30.0% | |
| AACCAGATGGTTTATGAAAA+AGG | + | chr2_1:8700837-8700856 | None:intergenic | 30.0% | |
| ! | AATATGGTTTGTGTATTACG+TGG | - | chr2_1:8701000-8701019 | Msa0192910:intron | 30.0% |
| ! | ATATGGTTTGTGTATTACGT+GGG | - | chr2_1:8701001-8701020 | Msa0192910:intron | 30.0% |
| !! | TTTTTGGAGGTCTAAAACAA+GGG | + | chr2_1:8701049-8701068 | None:intergenic | 30.0% |
| !!! | TTTTTTGGAGGTCTAAAACA+AGG | + | chr2_1:8701050-8701069 | None:intergenic | 30.0% |
| CCAAAAATATGACATTGTTG+CGG | + | chr2_1:8701160-8701179 | None:intergenic | 30.0% | |
| TAGTGGTAAGAATTCAACTT+AGG | - | chr2_1:8701698-8701717 | Msa0192910:intron | 30.0% | |
| AGAATTCAACTTAGGTAACA+TGG | - | chr2_1:8701706-8701725 | Msa0192910:intron | 30.0% | |
| !! | TGATAATTATCGATTTGTGC+AGG | - | chr2_1:8701777-8701796 | Msa0192910:intron | 30.0% |
| ! | TTCCAAACTACCCTTTTATT+GGG | - | chr2_1:8702076-8702095 | Msa0192910:CDS | 30.0% |
| !! | TTTAAGTTGGCATAATTTGG+AGG | - | chr2_1:8702170-8702189 | Msa0192910:CDS | 30.0% |
| TGCACTTGTGAATAAAACAT+TGG | - | chr2_1:8702263-8702282 | Msa0192910:CDS | 30.0% | |
| CTTGTGAATAAAACATTGGA+TGG | - | chr2_1:8702267-8702286 | Msa0192910:CDS | 30.0% | |
| ATTAATCAAAGACCAAAGGA+GGG | + | chr2_1:8702602-8702621 | None:intergenic | 30.0% | |
| TATTAATCAAAGACCAAAGG+AGG | + | chr2_1:8702603-8702622 | None:intergenic | 30.0% | |
| GAGTAGCAATCATGATCAAA+AGG | - | chr2_1:8700039-8700058 | Msa0192910:three_prime_UTR | 35.0% | |
| TAGCAATCATGATCAAAAGG+TGG | - | chr2_1:8700042-8700061 | Msa0192910:three_prime_UTR | 35.0% | |
| CATAATCCACTATGGTGAAA+TGG | - | chr2_1:8700190-8700209 | Msa0192910:three_prime_UTR | 35.0% | |
| AGTCTTTATCTAGAGAAGCT+TGG | - | chr2_1:8700396-8700415 | Msa0192910:CDS | 35.0% | |
| CTTGGAGTAAGGAATCAAAT+TGG | - | chr2_1:8700414-8700433 | Msa0192910:CDS | 35.0% | |
| ! | GAAGGGATATTGTTATTGCT+TGG | - | chr2_1:8700486-8700505 | Msa0192910:CDS | 35.0% |
| ! | GATATTGTTATTGCTTGGAG+AGG | - | chr2_1:8700491-8700510 | Msa0192910:CDS | 35.0% |
| ! | GAACGATACAAACTTTGGAA+TGG | - | chr2_1:8700513-8700532 | Msa0192910:CDS | 35.0% |
| ! | GTTTCTGCTCCTAAAGTATT+TGG | - | chr2_1:8700560-8700579 | Msa0192910:CDS | 35.0% |
| AATGATCCTAAAGTGCATCA+AGG | - | chr2_1:8700599-8700618 | Msa0192910:CDS | 35.0% | |
| !! | GTCTTATTGAAGGGAGATTT+TGG | + | chr2_1:8700653-8700672 | None:intergenic | 35.0% |
| ACATAGATTTACCTGGTTTC+GGG | + | chr2_1:8700681-8700700 | None:intergenic | 35.0% | |
| !! | TGCCTTTTTCATAAACCATC+TGG | - | chr2_1:8700832-8700851 | Msa0192910:intron | 35.0% |
| ! | CCGCAACAATGTCATATTTT+TGG | - | chr2_1:8701157-8701176 | Msa0192910:intron | 35.0% |
| GTTAGTTGAGACGTTATGAT+AGG | - | chr2_1:8701238-8701257 | Msa0192910:intron | 35.0% | |
| ATCTCACACATACAAAATCG+AGG | + | chr2_1:8701272-8701291 | None:intergenic | 35.0% | |
| ! | TTAGCGAAAACCTTTTCCAA+AGG | - | chr2_1:8701343-8701362 | Msa0192910:intron | 35.0% |
| AGCCTACAAATGTGTTAGAT+TGG | - | chr2_1:8701469-8701488 | Msa0192910:intron | 35.0% | |
| ATGTCTCATGGACATTCAAT+CGG | + | chr2_1:8701673-8701692 | None:intergenic | 35.0% | |
| TCCATGAGACATCAATTTAG+TGG | - | chr2_1:8701681-8701700 | Msa0192910:intron | 35.0% | |
| ACCACTAAATTGATGTCTCA+TGG | + | chr2_1:8701685-8701704 | None:intergenic | 35.0% | |
| ACTATAACAGGTCACAGTTT+AGG | - | chr2_1:8701856-8701875 | Msa0192910:intron | 35.0% | |
| AATTGCAACTCTAAATGCAG+TGG | - | chr2_1:8701885-8701904 | Msa0192910:intron | 35.0% | |
| ! | GTTCCAAACTACCCTTTTAT+TGG | - | chr2_1:8702075-8702094 | Msa0192910:CDS | 35.0% |
| TACCCAATAAAAGGGTAGTT+TGG | + | chr2_1:8702081-8702100 | None:intergenic | 35.0% | |
| CATCTGCATACCCAATAAAA+GGG | + | chr2_1:8702089-8702108 | None:intergenic | 35.0% | |
| ACATCTGCATACCCAATAAA+AGG | + | chr2_1:8702090-8702109 | None:intergenic | 35.0% | |
| TTTATTGGGTATGCAGATGT+TGG | - | chr2_1:8702090-8702109 | Msa0192910:CDS | 35.0% | |
| TCTATGTATTTGAAGAGTCC+AGG | - | chr2_1:8702141-8702160 | Msa0192910:CDS | 35.0% | |
| CTATGTATTTGAAGAGTCCA+GGG | - | chr2_1:8702142-8702161 | Msa0192910:CDS | 35.0% | |
| !! | GTCCAGGGAATATTTTAAGT+TGG | - | chr2_1:8702157-8702176 | Msa0192910:CDS | 35.0% |
| TGCCAACTTAAAATATTCCC+TGG | + | chr2_1:8702162-8702181 | None:intergenic | 35.0% | |
| AATTTGGAGGCTTATTTGCA+TGG | - | chr2_1:8702183-8702202 | Msa0192910:CDS | 35.0% | |
| TTCAACAATCAGATGGTTCA+TGG | - | chr2_1:8702349-8702368 | Msa0192910:CDS | 35.0% | |
| ACAGCAGCATAGCAAACAAA+TGG | - | chr2_1:8700099-8700118 | Msa0192910:three_prime_UTR | 40.0% | |
| AACAAATGGCAACAACTCAG+CGG | - | chr2_1:8700113-8700132 | Msa0192910:three_prime_UTR | 40.0% | |
| GTCGTAGATCAATGTCAAGA+GGG | + | chr2_1:8700166-8700185 | None:intergenic | 40.0% | |
| CGACGTTACATAATCCACTA+TGG | - | chr2_1:8700182-8700201 | Msa0192910:three_prime_UTR | 40.0% | |
| !! | GAGAAAGCATCAAAGTTTGC+AGG | - | chr2_1:8700242-8700261 | Msa0192910:CDS | 40.0% |
| CAAAGTTTGCAGGTAGTTGT+AGG | - | chr2_1:8700252-8700271 | Msa0192910:CDS | 40.0% | |
| GACTTCCGAAATCAATGTTC+CGG | - | chr2_1:8700358-8700377 | Msa0192910:CDS | 40.0% | |
| ATCTAGAGAAGCTTGGAGTA+AGG | - | chr2_1:8700403-8700422 | Msa0192910:CDS | 40.0% | |
| TTGCTGTGGCTAATGATGAA+GGG | - | chr2_1:8700447-8700466 | Msa0192910:CDS | 40.0% | |
| TGATGAAGGGAAAGATGTGT+TGG | - | chr2_1:8700460-8700479 | Msa0192910:CDS | 40.0% | |
| GATGAAGGGAAAGATGTGTT+GGG | - | chr2_1:8700461-8700480 | Msa0192910:CDS | 40.0% | |
| ATGAAGGGAAAGATGTGTTG+GGG | - | chr2_1:8700462-8700481 | Msa0192910:CDS | 40.0% | |
| GAGAGGAACGATACAAACTT+TGG | - | chr2_1:8700508-8700527 | Msa0192910:CDS | 40.0% | |
| ATCCTAAAGTGCATCAAGGT+TGG | - | chr2_1:8700603-8700622 | Msa0192910:CDS | 40.0% | |
| TACCAACCTTGATGCACTTT+AGG | + | chr2_1:8700608-8700627 | None:intergenic | 40.0% | |
| TTCAAAGTTTGGCAACCAGA+TGG | + | chr2_1:8700850-8700869 | None:intergenic | 40.0% | |
| GGCCAATCTAACACATTTGT+AGG | + | chr2_1:8701474-8701493 | None:intergenic | 40.0% | |
| !! | ATGTGTTAGATTGGCCTACA+TGG | - | chr2_1:8701478-8701497 | Msa0192910:intron | 40.0% |
| ATTTGTGCAGGTCTTAAGTG+AGG | - | chr2_1:8701789-8701808 | Msa0192910:intron | 40.0% | |
| GCAGTGGACATTGTTACAAA+TGG | - | chr2_1:8701901-8701920 | Msa0192910:intron | 40.0% | |
| GCAAATACTATGGCTGTAAC+TGG | + | chr2_1:8701964-8701983 | None:intergenic | 40.0% | |
| ! | TCTAGGGCTAGCAAATACTA+TGG | + | chr2_1:8701974-8701993 | None:intergenic | 40.0% |
| AGTTTGTGTCACCAACTCTA+GGG | + | chr2_1:8701990-8702009 | None:intergenic | 40.0% | |
| AAGTTTGTGTCACCAACTCT+AGG | + | chr2_1:8701991-8702010 | None:intergenic | 40.0% | |
| ATGGAGGGTTGTAGAGAATA+AGG | - | chr2_1:8702320-8702339 | Msa0192910:CDS | 40.0% | |
| TGGAGGGTTGTAGAGAATAA+GGG | - | chr2_1:8702321-8702340 | Msa0192910:CDS | 40.0% | |
| GGTTGTAGAGAATAAGGGTA+TGG | - | chr2_1:8702326-8702345 | Msa0192910:CDS | 40.0% | |
| GGTATGGTTCAACAATCAGA+TGG | - | chr2_1:8702342-8702361 | Msa0192910:CDS | 40.0% | |
| AGATGGTTCATGGAAGCTTA+TGG | - | chr2_1:8702359-8702378 | Msa0192910:CDS | 40.0% | |
| ATGGAAGCTTATGGATCATG+AGG | - | chr2_1:8702368-8702387 | Msa0192910:CDS | 40.0% | |
| ! | GCTATGCTGCTGTTGTTGTT+TGG | + | chr2_1:8700092-8700111 | None:intergenic | 45.0% |
| AACTCAGCGGCGAAAATCAT+TGG | - | chr2_1:8700126-8700145 | Msa0192910:three_prime_UTR | 45.0% | |
| AGCGGCGAAAATCATTGGAT+AGG | - | chr2_1:8700131-8700150 | Msa0192910:three_prime_UTR | 45.0% | |
| CGTCGTAGATCAATGTCAAG+AGG | + | chr2_1:8700167-8700186 | None:intergenic | 45.0% | |
| !! | CTTGTGCCATTTCACCATAG+TGG | + | chr2_1:8700199-8700218 | None:intergenic | 45.0% |
| !! | CGCTTCCGGAACATTGATTT+CGG | + | chr2_1:8700366-8700385 | None:intergenic | 45.0% |
| !! | TTGGATTGGGTTTGTTGCTG+TGG | - | chr2_1:8700433-8700452 | Msa0192910:CDS | 45.0% |
| GTTGCTGTGGCTAATGATGA+AGG | - | chr2_1:8700446-8700465 | Msa0192910:CDS | 45.0% | |
| GAAAGATGTGTTGGGGAGAA+GGG | - | chr2_1:8700469-8700488 | Msa0192910:CDS | 45.0% | |
| TTGTGTATTACGTGGGTCCA+AGG | - | chr2_1:8701008-8701027 | Msa0192910:intron | 45.0% | |
| TGTGTATTACGTGGGTCCAA+GGG | - | chr2_1:8701009-8701028 | Msa0192910:intron | 45.0% | |
| ! | GGAGGTCTAAAACAAGGGTT+TGG | + | chr2_1:8701044-8701063 | None:intergenic | 45.0% |
| AGGTCTTAAGTGAGGTGAGA+AGG | - | chr2_1:8701797-8701816 | Msa0192910:intron | 45.0% | |
| CTTAAGTGAGGTGAGAAGGT+TGG | - | chr2_1:8701801-8701820 | Msa0192910:intron | 45.0% | |
| ! | GTATTTGCTAGCCCTAGAGT+TGG | - | chr2_1:8701976-8701995 | Msa0192910:CDS | 45.0% |
| AATACCTTGTGCCAGTGTCA+TGG | - | chr2_1:8702301-8702320 | Msa0192910:CDS | 45.0% | |
| TTGTATGTTTGGCCCTCCTT+TGG | - | chr2_1:8702587-8702606 | Msa0192910:exon | 45.0% | |
| GGAAAGATGTGTTGGGGAGA+AGG | - | chr2_1:8700468-8700487 | Msa0192910:CDS | 50.0% | |
| !! | CGGGCACTGGTCTTATTGAA+GGG | + | chr2_1:8700662-8700681 | None:intergenic | 50.0% |
| !! | TCGGGCACTGGTCTTATTGA+AGG | + | chr2_1:8700663-8700682 | None:intergenic | 50.0% |
| ATTTACCTGGTTTCGGGCAC+TGG | + | chr2_1:8700675-8700694 | None:intergenic | 50.0% | |
| ATGACATTGTTGCGGCATGC+TGG | + | chr2_1:8701152-8701171 | None:intergenic | 50.0% | |
| AAGTGAGGTGAGAAGGTTGG+TGG | - | chr2_1:8701804-8701823 | Msa0192910:intron | 50.0% | |
| GGAGGCTTATTTGCATGGAG+TGG | - | chr2_1:8702188-8702207 | Msa0192910:CDS | 50.0% | |
| GCTTATTTGCATGGAGTGGC+AGG | - | chr2_1:8702192-8702211 | Msa0192910:CDS | 50.0% | |
| ATGGAGTGGCAGGAACACAA+GGG | - | chr2_1:8702202-8702221 | Msa0192910:CDS | 50.0% | |
| TCTACAACCCTCCATGACAC+TGG | + | chr2_1:8702315-8702334 | None:intergenic | 50.0% | |
| TAAGACCAGTGCCCGAAACC+AGG | - | chr2_1:8700667-8700686 | Msa0192910:CDS | 55.0% | |
| ACATTGTTGCGGCATGCTGG+TGG | + | chr2_1:8701149-8701168 | None:intergenic | 55.0% | |
| CATGGAGTGGCAGGAACACA+AGG | - | chr2_1:8702201-8702220 | Msa0192910:CDS | 55.0% | |
| ACCTTGTGCCAGTGTCATGG+AGG | - | chr2_1:8702304-8702323 | Msa0192910:CDS | 55.0% | |
| CCTTGTGCCAGTGTCATGGA+GGG | - | chr2_1:8702305-8702324 | Msa0192910:CDS | 55.0% | |
| ACGTGGGTCCAAGGGTGAAG+CGG | - | chr2_1:8701017-8701036 | Msa0192910:intron | 60.0% | |
| ! | GGTTTGGTCCGCTTCACCCT+TGG | + | chr2_1:8701028-8701047 | None:intergenic | 60.0% |
| CCCTCCATGACACTGGCACA+AGG | + | chr2_1:8702308-8702327 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_1 | gene | 8700019 | 8702626 | 8700019 | ID=Msa0192910;Name=Msa0192910 |
| chr2_1 | mRNA | 8700019 | 8702626 | 8700019 | ID=Msa0192910-mRNA-1;Parent=Msa0192910;Name=Msa0192910-mRNA-1;_AED=0.00;_eAED=0.00;_QI=31|1|1|1|1|1|2|222|414 |
| chr2_1 | exon | 8700019 | 8700846 | 8700019 | ID=Msa0192910-mRNA-1:exon:4018;Parent=Msa0192910-mRNA-1 |
| chr2_1 | exon | 8701957 | 8702626 | 8701957 | ID=Msa0192910-mRNA-1:exon:4017;Parent=Msa0192910-mRNA-1 |
| chr2_1 | five_prime_UTR | 8702596 | 8702626 | 8702596 | ID=Msa0192910-mRNA-1:five_prime_utr;Parent=Msa0192910-mRNA-1 |
| chr2_1 | CDS | 8701957 | 8702595 | 8701957 | ID=Msa0192910-mRNA-1:cds;Parent=Msa0192910-mRNA-1 |
| chr2_1 | CDS | 8700241 | 8700846 | 8700241 | ID=Msa0192910-mRNA-1:cds;Parent=Msa0192910-mRNA-1 |
| chr2_1 | three_prime_UTR | 8700019 | 8700240 | 8700019 | ID=Msa0192910-mRNA-1:three_prime_utr;Parent=Msa0192910-mRNA-1 |
| Gene Sequence |
| Protein sequence |
