Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0235110 | XP_003593747.2 | 97.101 | 414 | 12 | 0 | 1 | 414 | 20 | 433 | 0.0 | 829 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0235110 | sp|O49523|DSEL_ARATH | 61.713 | 397 | 147 | 3 | 20 | 413 | 19 | 413 | 0.0 | 523 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0235110 | A0A396J2K2 | 97.101 | 414 | 12 | 0 | 1 | 414 | 20 | 433 | 0.0 | 829 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0036890 | Msa0235110 | 0.808867 | 2.507745e-50 | -8.615850e-47 |
| Msa0084970 | Msa0235110 | 0.805837 | 1.100826e-49 | -8.615850e-47 |
| Msa0192910 | Msa0235110 | 0.964886 | 6.783371e-124 | -8.615850e-47 |
| Msa0235110 | Msa0273500 | 0.914249 | 2.392853e-84 | -8.615850e-47 |
| Msa0235110 | Msa0288620 | 0.822351 | 2.482237e-53 | -8.615850e-47 |
| Msa0235110 | Msa0313730 | 0.901453 | 2.640172e-78 | -8.615850e-47 |
| Msa0235110 | Msa0333610 | 0.807437 | 5.057946e-50 | -8.615850e-47 |
| Msa0235110 | Msa0427700 | 0.821238 | 4.490163e-53 | -8.615850e-47 |
| Msa0235110 | Msa0567380 | 0.803965 | 2.710414e-49 | -8.615850e-47 |
| Msa0235110 | Msa0612350 | 0.821406 | 4.106856e-53 | -8.615850e-47 |
| Msa0235110 | Msa0626270 | 0.806668 | 7.357539e-50 | -8.615850e-47 |
| Msa0235110 | Msa0626460 | 0.814839 | 1.256043e-51 | -8.615850e-47 |
| Msa0235110 | Msa0664540 | 0.816851 | 4.468984e-52 | -8.615850e-47 |
| Msa0235110 | Msa0687580 | 0.832461 | 9.328936e-56 | -8.615850e-47 |
| Msa0235110 | Msa0693340 | -0.813009 | 3.178905e-51 | -8.615850e-47 |
| Msa0235110 | Msa0702720 | 0.811079 | 8.374526e-51 | -8.615850e-47 |
| Msa0235110 | Msa0933760 | 0.813814 | 2.115466e-51 | -8.615850e-47 |
| Msa0235110 | Msa0971650 | 0.806177 | 9.338534e-50 | -8.615850e-47 |
| Msa0235110 | Msa1074890 | 0.801297 | 9.623636e-49 | -8.615850e-47 |
| Msa0235110 | Msa1115740 | 0.821400 | 4.120079e-53 | -8.615850e-47 |
| Msa0235110 | Msa1161810 | 0.801972 | 6.995437e-49 | -8.615850e-47 |
| Msa0235110 | Msa1165090 | 0.803870 | 2.836045e-49 | -8.615850e-47 |
| Msa0235110 | Msa1340200 | 0.823358 | 1.445819e-53 | -8.615850e-47 |
| Msa0235110 | Msa1341840 | 0.811067 | 8.427596e-51 | -8.615850e-47 |
| Msa0235110 | Msa1382710 | 0.825234 | 5.237477e-54 | -8.615850e-47 |
| Msa0235110 | Msa1428740 | 0.803610 | 3.211592e-49 | -8.615850e-47 |
| Msa0235110 | Msa1459360 | 0.825199 | 5.340647e-54 | -8.615850e-47 |
| Msa0235110 | Msa1461370 | 0.809112 | 2.222466e-50 | -8.615850e-47 |
| Msa0235110 | Msa1464090 | 0.832968 | 6.982545e-56 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0235110 | MtrunA17_Chr2g0283561 | 97.101 | 414 | 12 | 0 | 1 | 414 | 20 | 433 | 0.0 | 829 |
| Msa0235110 | MtrunA17_Chr4g0046001 | 62.374 | 396 | 141 | 4 | 19 | 412 | 12 | 401 | 8.55e-178 | 501 |
| Msa0235110 | MtrunA17_Chr4g0046011 | 61.364 | 396 | 145 | 4 | 19 | 412 | 3 | 392 | 2.31e-175 | 495 |
| Msa0235110 | MtrunA17_Chr4g0041311 | 47.044 | 406 | 180 | 5 | 24 | 404 | 32 | 427 | 6.69e-124 | 366 |
| Msa0235110 | MtrunA17_Chr4g0039301 | 43.489 | 407 | 197 | 8 | 20 | 404 | 100 | 495 | 1.65e-105 | 322 |
| Msa0235110 | MtrunA17_Chr7g0260671 | 40.714 | 420 | 221 | 6 | 8 | 406 | 62 | 474 | 3.89e-102 | 312 |
| Msa0235110 | MtrunA17_Chr7g0260681 | 40.113 | 354 | 184 | 6 | 20 | 352 | 74 | 420 | 1.23e-82 | 259 |
| Msa0235110 | MtrunA17_Chr5g0399641 | 34.375 | 384 | 195 | 9 | 20 | 369 | 135 | 495 | 2.51e-61 | 207 |
| Msa0235110 | MtrunA17_Chr7g0250611 | 36.712 | 365 | 185 | 15 | 19 | 361 | 74 | 414 | 4.01e-56 | 190 |
| Msa0235110 | MtrunA17_Chr7g0214711 | 35.143 | 350 | 179 | 10 | 20 | 347 | 105 | 428 | 7.42e-54 | 186 |
| Msa0235110 | MtrunA17_Chr7g0250561 | 35.222 | 406 | 196 | 15 | 14 | 370 | 63 | 450 | 1.47e-52 | 182 |
| Msa0235110 | MtrunA17_Chr4g0055691 | 33.071 | 381 | 197 | 9 | 19 | 369 | 128 | 480 | 1.20e-49 | 176 |
| Msa0235110 | MtrunA17_Chr2g0286301 | 31.319 | 182 | 90 | 8 | 131 | 310 | 89 | 237 | 8.06e-14 | 72.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0235110 | AT4G18550.2 | 61.713 | 397 | 147 | 3 | 20 | 413 | 36 | 430 | 0.0 | 523 |
| Msa0235110 | AT4G18550.1 | 61.713 | 397 | 147 | 3 | 20 | 413 | 19 | 413 | 0.0 | 523 |
| Msa0235110 | AT1G06250.1 | 52.685 | 391 | 178 | 2 | 20 | 406 | 5 | 392 | 9.02e-152 | 436 |
| Msa0235110 | AT4G18550.3 | 61.649 | 279 | 104 | 2 | 20 | 297 | 36 | 312 | 4.71e-127 | 370 |
| Msa0235110 | AT2G42690.1 | 44.096 | 415 | 203 | 5 | 18 | 412 | 2 | 407 | 4.33e-112 | 335 |
| Msa0235110 | AT1G06800.1 | 42.476 | 412 | 199 | 10 | 20 | 404 | 85 | 485 | 4.98e-102 | 313 |
| Msa0235110 | AT1G51440.1 | 43.468 | 421 | 195 | 11 | 19 | 408 | 86 | 494 | 2.36e-100 | 308 |
| Msa0235110 | AT1G06250.2 | 51.601 | 281 | 129 | 2 | 130 | 406 | 1 | 278 | 3.38e-100 | 301 |
| Msa0235110 | AT2G30550.2 | 40.380 | 421 | 214 | 10 | 10 | 404 | 91 | 500 | 5.41e-97 | 300 |
| Msa0235110 | AT1G06800.2 | 41.274 | 361 | 174 | 10 | 20 | 353 | 85 | 434 | 2.04e-84 | 265 |
| Msa0235110 | AT1G30370.1 | 37.857 | 420 | 226 | 8 | 6 | 404 | 100 | 505 | 1.43e-83 | 265 |
| Msa0235110 | AT2G30550.1 | 39.566 | 369 | 186 | 10 | 10 | 352 | 91 | 448 | 1.06e-81 | 258 |
| Msa0235110 | AT2G44810.2 | 36.148 | 379 | 179 | 13 | 20 | 361 | 86 | 438 | 8.46e-61 | 204 |
| Msa0235110 | AT2G44810.1 | 36.757 | 370 | 171 | 13 | 29 | 361 | 5 | 348 | 2.41e-59 | 197 |
| Msa0235110 | AT4G16820.1 | 35.602 | 382 | 187 | 8 | 18 | 368 | 125 | 478 | 7.16e-58 | 197 |
| Msa0235110 | AT1G05800.1 | 34.699 | 366 | 198 | 9 | 12 | 357 | 72 | 416 | 2.68e-55 | 190 |
| Msa0235110 | AT2G31690.1 | 34.770 | 348 | 189 | 7 | 20 | 347 | 88 | 417 | 2.84e-54 | 187 |
| Msa0235110 | AT5G18640.5 | 32.927 | 164 | 83 | 6 | 149 | 310 | 100 | 238 | 1.09e-14 | 74.7 |
| Msa0235110 | AT5G18640.1 | 32.927 | 164 | 83 | 6 | 149 | 310 | 100 | 238 | 2.31e-14 | 74.3 |
| Msa0235110 | AT5G18640.3 | 32.927 | 164 | 83 | 6 | 149 | 310 | 100 | 238 | 2.31e-14 | 74.3 |
| Msa0235110 | AT5G18640.4 | 31.868 | 182 | 90 | 7 | 131 | 310 | 101 | 250 | 2.47e-14 | 74.3 |
| Msa0235110 | AT5G18640.2 | 31.868 | 182 | 90 | 7 | 131 | 310 | 101 | 250 | 2.47e-14 | 74.3 |
Find 96 sgRNAs with CRISPR-Local
Find 166 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTCTTATTGAAGGGAGATTT+TGG | 0.169096 | 2_2:+7880245 | None:intergenic |
| GTTTCTGCTCCTAAAGTATT+TGG | 0.175913 | 2_2:-7880335 | Msa0235110:CDS |
| ACATCTGCATACCCAATAAA+AGG | 0.189119 | 2_2:+7878807 | None:intergenic |
| ATGGAGGGTTGTAGAGAATA+AGG | 0.217063 | 2_2:-7878574 | Msa0235110:CDS |
| ACATAGATTTACCTGGTTTC+GGG | 0.243614 | 2_2:+7880217 | None:intergenic |
| TGGATCTTCAGAAGTATAAA+TGG | 0.266518 | 2_2:+7880265 | None:intergenic |
| AACATAGATTTACCTGGTTT+CGG | 0.276273 | 2_2:+7880216 | None:intergenic |
| TAATGATCTTCAGTTTCTTT+TGG | 0.277450 | 2_2:-7880357 | Msa0235110:CDS |
| CTGCTATTACCAAATACTTT+AGG | 0.283364 | 2_2:+7880326 | None:intergenic |
| TTTGTTACAGAATATTTAAA+AGG | 0.323206 | 2_2:+7880572 | None:intergenic |
| TACCAACCTTGATGCACTTT+AGG | 0.338088 | 2_2:+7880290 | None:intergenic |
| CTTGGAGTAAGGAATCAAAT+TGG | 0.342591 | 2_2:-7880481 | Msa0235110:CDS |
| TACCCAATAAAAGGGTAGTT+TGG | 0.342990 | 2_2:+7878816 | None:intergenic |
| TATAATTGAGAATTTATTCA+TGG | 0.362934 | 2_2:-7878478 | Msa0235110:three_prime_UTR |
| CGCTTCCGGAACATTGATTT+CGG | 0.366404 | 2_2:+7880532 | None:intergenic |
| TATGAACATTATTGTATGTT+TGG | 0.369024 | 2_2:-7878315 | Msa0235110:three_prime_UTR |
| ATTTACCTGGTTTCGGGCAC+TGG | 0.370820 | 2_2:+7880223 | None:intergenic |
| AGATGGTTCATGGAAGCTTA+TGG | 0.372107 | 2_2:-7878535 | Msa0235110:CDS |
| GCTATGCTGCTGTTGTTGTT+TGG | 0.373108 | 2_2:+7880806 | None:intergenic |
| GAAGGGATATTGTTATTGCT+TGG | 0.374037 | 2_2:-7880409 | Msa0235110:CDS |
| GAAATAAGCATAACTATAAC+AGG | 0.376230 | 2_2:-7879050 | Msa0235110:CDS |
| ACTATAACAGGTCACAGTTT+AGG | 0.384060 | 2_2:-7879038 | Msa0235110:CDS |
| CATAATCCACTATGGTGAAA+TGG | 0.388866 | 2_2:-7880705 | Msa0235110:CDS |
| CAAAGTTTGCAGGTAGTTGT+AGG | 0.393065 | 2_2:-7880643 | Msa0235110:CDS |
| TCGGGCACTGGTCTTATTGA+AGG | 0.398715 | 2_2:+7880235 | None:intergenic |
| AACTCAGCGGCGAAAATCAT+TGG | 0.405365 | 2_2:-7880769 | Msa0235110:CDS |
| TTGTATGTTTGGCCCTCCTT+TGG | 0.405487 | 2_2:-7878304 | Msa0235110:three_prime_UTR |
| GGAAAGATGTGTTGGGGAGA+AGG | 0.411910 | 2_2:-7880427 | Msa0235110:CDS |
| GACTTTATAATAAACGCTTC+CGG | 0.415146 | 2_2:+7880518 | None:intergenic |
| GTAAGGAATCAAATTGGATT+GGG | 0.415930 | 2_2:-7880475 | Msa0235110:CDS |
| AGTAAGGAATCAAATTGGAT+TGG | 0.423060 | 2_2:-7880476 | Msa0235110:CDS |
| GCTTATTTGCATGGAGTGGC+AGG | 0.430370 | 2_2:-7878702 | Msa0235110:CDS |
| TCTAGGGCTAGCAAATACTA+TGG | 0.437648 | 2_2:+7878923 | None:intergenic |
| GCAAATACTATGGCTGTAAC+TGG | 0.439803 | 2_2:+7878933 | None:intergenic |
| TTCAACAATCAGATGGTTCA+TGG | 0.443571 | 2_2:-7878545 | Msa0235110:CDS |
| AACGATACAAACTTTGGAAT+GGG | 0.445770 | 2_2:-7880381 | Msa0235110:CDS |
| GACTTCCGAAATCAATGTTC+CGG | 0.446184 | 2_2:-7880537 | Msa0235110:CDS |
| GAGAAAGCATCAAAGTTTGC+AGG | 0.452694 | 2_2:-7880653 | Msa0235110:CDS |
| ATCTAGAGAAGCTTGGAGTA+AGG | 0.456251 | 2_2:-7880492 | Msa0235110:CDS |
| CGACGTTACATAATCCACTA+TGG | 0.458056 | 2_2:-7880713 | Msa0235110:CDS |
| AAGTTTGTGTCACCAACTCT+AGG | 0.461380 | 2_2:+7878906 | None:intergenic |
| GAAAGATGTGTTGGGGAGAA+GGG | 0.463613 | 2_2:-7880426 | Msa0235110:CDS |
| GCAGTGGACATTGTTACAAA+TGG | 0.466972 | 2_2:-7878993 | Msa0235110:CDS |
| GAGAGGAACGATACAAACTT+TGG | 0.468667 | 2_2:-7880387 | Msa0235110:CDS |
| TCTATGTATTTGAAGAGTCC+AGG | 0.484311 | 2_2:-7878753 | Msa0235110:CDS |
| AATTTGGAGGCTTATTTGCA+TGG | 0.495411 | 2_2:-7878711 | Msa0235110:CDS |
| AGTCTTTATCTAGAGAAGCT+TGG | 0.498976 | 2_2:-7880499 | Msa0235110:CDS |
| TTTAAGTTGGCATAATTTGG+AGG | 0.502108 | 2_2:-7878724 | Msa0235110:CDS |
| TGCCAACTTAAAATATTCCC+TGG | 0.503206 | 2_2:+7878735 | None:intergenic |
| GATGAAGGGAAAGATGTGTT+GGG | 0.510788 | 2_2:-7880434 | Msa0235110:CDS |
| CTTGTGCCATTTCACCATAG+TGG | 0.510988 | 2_2:+7880699 | None:intergenic |
| GAGTAGCAATCATGATCAAA+AGG | 0.511049 | 2_2:-7880856 | Msa0235110:exon |
| TTGGATTGGGTTTGTTGCTG+TGG | 0.511970 | 2_2:-7880462 | Msa0235110:CDS |
| CTTAAGTGAGGTGAGAAGGT+TGG | 0.512596 | 2_2:-7879093 | Msa0235110:CDS |
| AAGTGAGGTGAGAAGGTTGG+TGG | 0.515539 | 2_2:-7879090 | Msa0235110:CDS |
| TGGAGGGTTGTAGAGAATAA+GGG | 0.516398 | 2_2:-7878573 | Msa0235110:CDS |
| GAACGATACAAACTTTGGAA+TGG | 0.518160 | 2_2:-7880382 | Msa0235110:CDS |
| ACAGCAGCATAGCAAACAAA+TGG | 0.523423 | 2_2:-7880796 | Msa0235110:CDS |
| CGGGCACTGGTCTTATTGAA+GGG | 0.526702 | 2_2:+7880236 | None:intergenic |
| GGTTGTAGAGAATAAGGGTA+TGG | 0.529061 | 2_2:-7878568 | Msa0235110:CDS |
| CATCTGCATACCCAATAAAA+GGG | 0.530668 | 2_2:+7878808 | None:intergenic |
| GTTGCTGTGGCTAATGATGA+AGG | 0.534220 | 2_2:-7880449 | Msa0235110:CDS |
| TGATGAAGGGAAAGATGTGT+TGG | 0.535789 | 2_2:-7880435 | Msa0235110:CDS |
| TTTATTGGGTATGCAGATGT+TGG | 0.539197 | 2_2:-7878804 | Msa0235110:CDS |
| CATGGAGTGGCAGGAACACA+AGG | 0.541108 | 2_2:-7878693 | Msa0235110:CDS |
| ATCCTAAAGTGCATCAAGGT+TGG | 0.542256 | 2_2:-7880292 | Msa0235110:CDS |
| TATTAATCAAAGACCAAAGG+AGG | 0.543306 | 2_2:+7878291 | None:intergenic |
| TGCACTTGTGAATAAAACAT+TGG | 0.548353 | 2_2:-7878631 | Msa0235110:CDS |
| CTTGTGAATAAAACATTGGA+TGG | 0.548661 | 2_2:-7878627 | Msa0235110:CDS |
| TAAGACCAGTGCCCGAAACC+AGG | 0.563404 | 2_2:-7880228 | Msa0235110:intron |
| AGGTCTTAAGTGAGGTGAGA+AGG | 0.577836 | 2_2:-7879097 | Msa0235110:CDS |
| TCTACAACCCTCCATGACAC+TGG | 0.578955 | 2_2:+7878582 | None:intergenic |
| AGTTTGTGTCACCAACTCTA+GGG | 0.582592 | 2_2:+7878907 | None:intergenic |
| GTATTTGCTAGCCCTAGAGT+TGG | 0.582655 | 2_2:-7878918 | Msa0235110:CDS |
| AATACCTTGTGCCAGTGTCA+TGG | 0.585230 | 2_2:-7878593 | Msa0235110:CDS |
| CTATGTATTTGAAGAGTCCA+GGG | 0.587725 | 2_2:-7878752 | Msa0235110:CDS |
| GGAGGCTTATTTGCATGGAG+TGG | 0.592309 | 2_2:-7878706 | Msa0235110:CDS |
| GATATTGTTATTGCTTGGAG+AGG | 0.596230 | 2_2:-7880404 | Msa0235110:CDS |
| AATGATCCTAAAGTGCATCA+AGG | 0.597945 | 2_2:-7880296 | Msa0235110:CDS |
| ATTTATTAATCAAAGACCAA+AGG | 0.608405 | 2_2:+7878288 | None:intergenic |
| ATGGAAGCTTATGGATCATG+AGG | 0.613240 | 2_2:-7878526 | Msa0235110:CDS |
| CCCTCCATGACACTGGCACA+AGG | 0.616143 | 2_2:+7878589 | None:intergenic |
| CGTCGTAGATCAATGTCAAG+AGG | 0.622571 | 2_2:+7880731 | None:intergenic |
| ATTAATCAAAGACCAAAGGA+GGG | 0.624748 | 2_2:+7878292 | None:intergenic |
| GTCGTAGATCAATGTCAAGA+GGG | 0.625735 | 2_2:+7880732 | None:intergenic |
| AGCGGCGAAAATCATTGGAT+AGG | 0.626832 | 2_2:-7880764 | Msa0235110:CDS |
| GGTATGGTTCAACAATCAGA+TGG | 0.636286 | 2_2:-7878552 | Msa0235110:CDS |
| ACCTTGTGCCAGTGTCATGG+AGG | 0.647161 | 2_2:-7878590 | Msa0235110:CDS |
| ATTTGTGCAGGTCTTAAGTG+AGG | 0.649606 | 2_2:-7879105 | Msa0235110:intron |
| TAGCAATCATGATCAAAAGG+TGG | 0.653386 | 2_2:-7880853 | Msa0235110:exon |
| TTGCTGTGGCTAATGATGAA+GGG | 0.655838 | 2_2:-7880448 | Msa0235110:CDS |
| ATGAAGGGAAAGATGTGTTG+GGG | 0.669413 | 2_2:-7880433 | Msa0235110:CDS |
| CCTTGTGCCAGTGTCATGGA+GGG | 0.679650 | 2_2:-7878589 | Msa0235110:CDS |
| AATTGCAACTCTAAATGCAG+TGG | 0.688195 | 2_2:-7879009 | Msa0235110:CDS |
| AACAAATGGCAACAACTCAG+CGG | 0.706384 | 2_2:-7880782 | Msa0235110:CDS |
| ATGGAGTGGCAGGAACACAA+GGG | 0.725550 | 2_2:-7878692 | Msa0235110:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAGTATTTTTTTCTTTAAAA+CGG | - | chr2_2:7878971-7878990 | Msa0235110:CDS | 10.0% |
| !!! | ATATCAATTATTTTATTTGA+GGG | + | chr2_2:7879362-7879381 | None:intergenic | 10.0% |
| !!! | TATATCAATTATTTTATTTG+AGG | + | chr2_2:7879363-7879382 | None:intergenic | 10.0% |
| !! | AACCAAAAAAAATATTAAAT+TGG | - | chr2_2:7879591-7879610 | Msa0235110:intron | 10.0% |
| !!! | AACCAATTTAATATTTTTTT+TGG | + | chr2_2:7879596-7879615 | None:intergenic | 10.0% |
| !! | TAAACAAAAATTTATATTTG+TGG | - | chr2_2:7879915-7879934 | Msa0235110:intron | 10.0% |
| !!! | TCTAAAGTTTTTTTAGAAAA+TGG | - | chr2_2:7878566-7878585 | Msa0235110:CDS | 15.0% |
| !! | TTTGTTACAGAATATTTAAA+AGG | + | chr2_2:7878596-7878615 | None:intergenic | 15.0% |
| !!! | AGTATTTTTTTCTTTAAAAC+GGG | - | chr2_2:7878972-7878991 | Msa0235110:CDS | 15.0% |
| !! | CATAATGAAAAACTAATATA+TGG | + | chr2_2:7879180-7879199 | None:intergenic | 15.0% |
| !!! | TTTCCTTGATTTTTTTTTTT+TGG | + | chr2_2:7879335-7879354 | None:intergenic | 15.0% |
| !! | AAAAAAAAAATCAAGGAAAA+AGG | - | chr2_2:7879336-7879355 | Msa0235110:intron | 15.0% |
| !!! | AGATTATATTAGTTTGATAT+TGG | + | chr2_2:7879817-7879836 | None:intergenic | 15.0% |
| !! | AAAATAAAAATTCAAGTGTT+TGG | - | chr2_2:7879847-7879866 | Msa0235110:intron | 15.0% |
| !! | AACACTTCAATTAAAAAAAT+TGG | - | chr2_2:7880004-7880023 | Msa0235110:intron | 15.0% |
| !! | TATAATTGAGAATTTATTCA+TGG | - | chr2_2:7880687-7880706 | Msa0235110:CDS | 15.0% |
| !!! | TATCATTATTTTTTAGTTTG+AGG | - | chr2_2:7880717-7880736 | Msa0235110:CDS | 15.0% |
| !!! | GTATTTTTTTCTTTAAAACG+GGG | - | chr2_2:7878973-7878992 | Msa0235110:CDS | 20.0% |
| !!! | TATTTTTTTCTTTAAAACGG+GGG | - | chr2_2:7878974-7878993 | Msa0235110:CDS | 20.0% |
| !!! | TGATTTTAGCAGTTAAAATA+TGG | + | chr2_2:7879225-7879244 | None:intergenic | 20.0% |
| !! | TTTAACTGCTAAAATCAATA+TGG | - | chr2_2:7879228-7879247 | Msa0235110:intron | 20.0% |
| !!! | AACCATATTGTTTTTTTCAA+GGG | + | chr2_2:7879259-7879278 | None:intergenic | 20.0% |
| !!! | AAACCATATTGTTTTTTTCA+AGG | + | chr2_2:7879260-7879279 | None:intergenic | 20.0% |
| !! | AGAGAATAATATTAGAAAAG+AGG | - | chr2_2:7879394-7879413 | Msa0235110:intron | 20.0% |
| !!! | TATATGACTATTTCTTTAGT+TGG | + | chr2_2:7879659-7879678 | None:intergenic | 20.0% |
| !!! | TCTTATTTACAAGTTTATTG+TGG | - | chr2_2:7879683-7879702 | Msa0235110:intron | 20.0% |
| !!! | AAATGATTGATTAGTTGTTA+AGG | - | chr2_2:7879874-7879893 | Msa0235110:intron | 20.0% |
| !!! | ATTTTTGTTTATTTGCTTGA+TGG | + | chr2_2:7879906-7879925 | None:intergenic | 20.0% |
| !!! | TATTTTAAGTTGGCATAATT+TGG | - | chr2_2:7880438-7880457 | Msa0235110:CDS | 20.0% |
| !! | TATGAACATTATTGTATGTT+TGG | - | chr2_2:7880850-7880869 | Msa0235110:exon | 20.0% |
| !! | ATTTATTAATCAAAGACCAA+AGG | + | chr2_2:7880880-7880899 | None:intergenic | 20.0% |
| !!! | CTGCTTGTTTTTTTTATGTA+TGG | + | chr2_2:7878290-7878309 | None:intergenic | 25.0% |
| !! | TAATGATCTTCAGTTTCTTT+TGG | - | chr2_2:7878808-7878827 | Msa0235110:CDS | 25.0% |
| ! | AATACTAACATAGATTTACC+TGG | + | chr2_2:7878958-7878977 | None:intergenic | 25.0% |
| ! | ATGCTCAATAAAGCAAATAT+AGG | - | chr2_2:7879074-7879093 | Msa0235110:CDS | 25.0% |
| ! | CATATATCTCTTTCAAAGTT+TGG | + | chr2_2:7879131-7879150 | None:intergenic | 25.0% |
| ! | TTCCCTTGAAAAAAACAATA+TGG | - | chr2_2:7879254-7879273 | Msa0235110:intron | 25.0% |
| !!! | CCTTGATTTTTTTTTTTTGG+AGG | + | chr2_2:7879332-7879351 | None:intergenic | 25.0% |
| ! | CCTCCAAAAAAAAAAAATCA+AGG | - | chr2_2:7879329-7879348 | Msa0235110:intron | 25.0% |
| !!! | ATATTTTTATCATGTGAGCT+AGG | + | chr2_2:7879482-7879501 | None:intergenic | 25.0% |
| !! | AATAATTTGACCTTTGGAAA+AGG | + | chr2_2:7879627-7879646 | None:intergenic | 25.0% |
| ! | AATAATAGTTTAGTCCATGT+AGG | + | chr2_2:7879766-7879785 | None:intergenic | 25.0% |
| ! | GAAATAAGCATAACTATAAC+AGG | - | chr2_2:7880115-7880134 | Msa0235110:intron | 25.0% |
| GACTTTATAATAAACGCTTC+CGG | + | chr2_2:7878650-7878669 | None:intergenic | 30.0% | |
| AGTAAGGAATCAAATTGGAT+TGG | - | chr2_2:7878689-7878708 | Msa0235110:CDS | 30.0% | |
| GTAAGGAATCAAATTGGATT+GGG | - | chr2_2:7878690-7878709 | Msa0235110:CDS | 30.0% | |
| !! | AACGATACAAACTTTGGAAT+GGG | - | chr2_2:7878784-7878803 | Msa0235110:CDS | 30.0% |
| CTGCTATTACCAAATACTTT+AGG | + | chr2_2:7878842-7878861 | None:intergenic | 30.0% | |
| ! | TGGATCTTCAGAAGTATAAA+TGG | + | chr2_2:7878903-7878922 | None:intergenic | 30.0% |
| AACATAGATTTACCTGGTTT+CGG | + | chr2_2:7878952-7878971 | None:intergenic | 30.0% | |
| AACCAGATGGTTTATGAAAA+AGG | + | chr2_2:7879107-7879126 | None:intergenic | 30.0% | |
| ! | AATATGGTTTGTGTATTACG+TGG | - | chr2_2:7879270-7879289 | Msa0235110:intron | 30.0% |
| ! | ATATGGTTTGTGTATTACGT+GGG | - | chr2_2:7879271-7879290 | Msa0235110:intron | 30.0% |
| !! | TTTTTGGAGGTCTAAAACAA+GGG | + | chr2_2:7879319-7879338 | None:intergenic | 30.0% |
| !!! | TTTTTTGGAGGTCTAAAACA+AGG | + | chr2_2:7879320-7879339 | None:intergenic | 30.0% |
| CCAAAAATATGACATTGTTG+CGG | + | chr2_2:7879431-7879450 | None:intergenic | 30.0% | |
| TGTGGAAATAATTTGACCTT+TGG | + | chr2_2:7879633-7879652 | None:intergenic | 30.0% | |
| !! | TATTTCTTTAGTTGGTCTTG+TGG | + | chr2_2:7879651-7879670 | None:intergenic | 30.0% |
| TAGTGGTAAGAATTCAACTT+AGG | - | chr2_2:7879969-7879988 | Msa0235110:intron | 30.0% | |
| AGAATTCAACTTAGGTAACA+TGG | - | chr2_2:7879977-7879996 | Msa0235110:intron | 30.0% | |
| !! | TGATAATTATCGATTTGTGC+AGG | - | chr2_2:7880048-7880067 | Msa0235110:intron | 30.0% |
| ! | TTCCAAACTACCCTTTTATT+GGG | - | chr2_2:7880347-7880366 | Msa0235110:CDS | 30.0% |
| !! | TTTAAGTTGGCATAATTTGG+AGG | - | chr2_2:7880441-7880460 | Msa0235110:CDS | 30.0% |
| TGCACTTGTGAATAAAACAT+TGG | - | chr2_2:7880534-7880553 | Msa0235110:CDS | 30.0% | |
| CTTGTGAATAAAACATTGGA+TGG | - | chr2_2:7880538-7880557 | Msa0235110:CDS | 30.0% | |
| ATTAATCAAAGACCAAAGGA+GGG | + | chr2_2:7880876-7880895 | None:intergenic | 30.0% | |
| TATTAATCAAAGACCAAAGG+AGG | + | chr2_2:7880877-7880896 | None:intergenic | 30.0% | |
| GAGTAGCAATCATGATCAAA+AGG | - | chr2_2:7878309-7878328 | Msa0235110:three_prime_UTR | 35.0% | |
| TAGCAATCATGATCAAAAGG+TGG | - | chr2_2:7878312-7878331 | Msa0235110:three_prime_UTR | 35.0% | |
| CATAATCCACTATGGTGAAA+TGG | - | chr2_2:7878460-7878479 | Msa0235110:three_prime_UTR | 35.0% | |
| AGTCTTTATCTAGAGAAGCT+TGG | - | chr2_2:7878666-7878685 | Msa0235110:CDS | 35.0% | |
| CTTGGAGTAAGGAATCAAAT+TGG | - | chr2_2:7878684-7878703 | Msa0235110:CDS | 35.0% | |
| ! | GAAGGGATATTGTTATTGCT+TGG | - | chr2_2:7878756-7878775 | Msa0235110:CDS | 35.0% |
| ! | GATATTGTTATTGCTTGGAG+AGG | - | chr2_2:7878761-7878780 | Msa0235110:CDS | 35.0% |
| ! | GAACGATACAAACTTTGGAA+TGG | - | chr2_2:7878783-7878802 | Msa0235110:CDS | 35.0% |
| ! | GTTTCTGCTCCTAAAGTATT+TGG | - | chr2_2:7878830-7878849 | Msa0235110:CDS | 35.0% |
| AATGATCCTAAAGTGCATCA+AGG | - | chr2_2:7878869-7878888 | Msa0235110:CDS | 35.0% | |
| !! | GTCTTATTGAAGGGAGATTT+TGG | + | chr2_2:7878923-7878942 | None:intergenic | 35.0% |
| ACATAGATTTACCTGGTTTC+GGG | + | chr2_2:7878951-7878970 | None:intergenic | 35.0% | |
| !! | TGCCTTTTTCATAAACCATC+TGG | - | chr2_2:7879102-7879121 | Msa0235110:intron | 35.0% |
| ! | CCGCAACAATGTCATATTTT+TGG | - | chr2_2:7879428-7879447 | Msa0235110:intron | 35.0% |
| GTTAGTTGAGACGTTATGAT+AGG | - | chr2_2:7879509-7879528 | Msa0235110:intron | 35.0% | |
| ATCTCACACATACAAAATCG+AGG | + | chr2_2:7879543-7879562 | None:intergenic | 35.0% | |
| ! | TTAGCGAAAACCTTTTCCAA+AGG | - | chr2_2:7879614-7879633 | Msa0235110:intron | 35.0% |
| AGCCTACAAATGTGTTAGAT+TGG | - | chr2_2:7879740-7879759 | Msa0235110:intron | 35.0% | |
| ATGTCTCATGGACATTCAAT+CGG | + | chr2_2:7879944-7879963 | None:intergenic | 35.0% | |
| TCCATGAGACATCAATTTAG+TGG | - | chr2_2:7879952-7879971 | Msa0235110:intron | 35.0% | |
| ACCACTAAATTGATGTCTCA+TGG | + | chr2_2:7879956-7879975 | None:intergenic | 35.0% | |
| ACTATAACAGGTCACAGTTT+AGG | - | chr2_2:7880127-7880146 | Msa0235110:intron | 35.0% | |
| AATTGCAACTCTAAATGCAG+TGG | - | chr2_2:7880156-7880175 | Msa0235110:intron | 35.0% | |
| ! | GTTCCAAACTACCCTTTTAT+TGG | - | chr2_2:7880346-7880365 | Msa0235110:CDS | 35.0% |
| TACCCAATAAAAGGGTAGTT+TGG | + | chr2_2:7880352-7880371 | None:intergenic | 35.0% | |
| CATCTGCATACCCAATAAAA+GGG | + | chr2_2:7880360-7880379 | None:intergenic | 35.0% | |
| ACATCTGCATACCCAATAAA+AGG | + | chr2_2:7880361-7880380 | None:intergenic | 35.0% | |
| TTTATTGGGTATGCAGATGT+TGG | - | chr2_2:7880361-7880380 | Msa0235110:CDS | 35.0% | |
| TCTATGTATTTGAAGAGTCC+AGG | - | chr2_2:7880412-7880431 | Msa0235110:CDS | 35.0% | |
| CTATGTATTTGAAGAGTCCA+GGG | - | chr2_2:7880413-7880432 | Msa0235110:CDS | 35.0% | |
| !! | GTCCAGGGAATATTTTAAGT+TGG | - | chr2_2:7880428-7880447 | Msa0235110:CDS | 35.0% |
| TGCCAACTTAAAATATTCCC+TGG | + | chr2_2:7880433-7880452 | None:intergenic | 35.0% | |
| AATTTGGAGGCTTATTTGCA+TGG | - | chr2_2:7880454-7880473 | Msa0235110:CDS | 35.0% | |
| TTCAACAATCAGATGGTTCA+TGG | - | chr2_2:7880620-7880639 | Msa0235110:CDS | 35.0% | |
| ACAGCAGCATAGCAAACAAA+TGG | - | chr2_2:7878369-7878388 | Msa0235110:three_prime_UTR | 40.0% | |
| AACAAATGGCAACAACTCAG+CGG | - | chr2_2:7878383-7878402 | Msa0235110:three_prime_UTR | 40.0% | |
| GTCGTAGATCAATGTCAAGA+GGG | + | chr2_2:7878436-7878455 | None:intergenic | 40.0% | |
| CGACGTTACATAATCCACTA+TGG | - | chr2_2:7878452-7878471 | Msa0235110:three_prime_UTR | 40.0% | |
| !! | GAGAAAGCATCAAAGTTTGC+AGG | - | chr2_2:7878512-7878531 | Msa0235110:CDS | 40.0% |
| CAAAGTTTGCAGGTAGTTGT+AGG | - | chr2_2:7878522-7878541 | Msa0235110:CDS | 40.0% | |
| GACTTCCGAAATCAATGTTC+CGG | - | chr2_2:7878628-7878647 | Msa0235110:CDS | 40.0% | |
| ATCTAGAGAAGCTTGGAGTA+AGG | - | chr2_2:7878673-7878692 | Msa0235110:CDS | 40.0% | |
| TTGCTGTGGCTAATGATGAA+GGG | - | chr2_2:7878717-7878736 | Msa0235110:CDS | 40.0% | |
| TGATGAAGGGAAAGATGTGT+TGG | - | chr2_2:7878730-7878749 | Msa0235110:CDS | 40.0% | |
| GATGAAGGGAAAGATGTGTT+GGG | - | chr2_2:7878731-7878750 | Msa0235110:CDS | 40.0% | |
| ATGAAGGGAAAGATGTGTTG+GGG | - | chr2_2:7878732-7878751 | Msa0235110:CDS | 40.0% | |
| GAGAGGAACGATACAAACTT+TGG | - | chr2_2:7878778-7878797 | Msa0235110:CDS | 40.0% | |
| ATCCTAAAGTGCATCAAGGT+TGG | - | chr2_2:7878873-7878892 | Msa0235110:CDS | 40.0% | |
| TACCAACCTTGATGCACTTT+AGG | + | chr2_2:7878878-7878897 | None:intergenic | 40.0% | |
| TTCAAAGTTTGGCAACCAGA+TGG | + | chr2_2:7879120-7879139 | None:intergenic | 40.0% | |
| GGCCAATCTAACACATTTGT+AGG | + | chr2_2:7879745-7879764 | None:intergenic | 40.0% | |
| !! | ATGTGTTAGATTGGCCTACA+TGG | - | chr2_2:7879749-7879768 | Msa0235110:intron | 40.0% |
| ATTTGTGCAGGTCTTAAGTG+AGG | - | chr2_2:7880060-7880079 | Msa0235110:intron | 40.0% | |
| GCAGTGGACATTGTTACAAA+TGG | - | chr2_2:7880172-7880191 | Msa0235110:intron | 40.0% | |
| GCAAATACTATGGCTGTAAC+TGG | + | chr2_2:7880235-7880254 | None:intergenic | 40.0% | |
| ! | TCTAGGGCTAGCAAATACTA+TGG | + | chr2_2:7880245-7880264 | None:intergenic | 40.0% |
| AGTTTGTGTCACCAACTCTA+GGG | + | chr2_2:7880261-7880280 | None:intergenic | 40.0% | |
| AAGTTTGTGTCACCAACTCT+AGG | + | chr2_2:7880262-7880281 | None:intergenic | 40.0% | |
| ATGGAGGGTTGTAGAGAATA+AGG | - | chr2_2:7880591-7880610 | Msa0235110:CDS | 40.0% | |
| TGGAGGGTTGTAGAGAATAA+GGG | - | chr2_2:7880592-7880611 | Msa0235110:CDS | 40.0% | |
| GGTTGTAGAGAATAAGGGTA+TGG | - | chr2_2:7880597-7880616 | Msa0235110:CDS | 40.0% | |
| GGTATGGTTCAACAATCAGA+TGG | - | chr2_2:7880613-7880632 | Msa0235110:CDS | 40.0% | |
| AGATGGTTCATGGAAGCTTA+TGG | - | chr2_2:7880630-7880649 | Msa0235110:CDS | 40.0% | |
| ATGGAAGCTTATGGATCATG+AGG | - | chr2_2:7880639-7880658 | Msa0235110:CDS | 40.0% | |
| ! | GCTATGCTGCTGTTGTTGTT+TGG | + | chr2_2:7878362-7878381 | None:intergenic | 45.0% |
| AACTCAGCGGCGAAAATCAT+TGG | - | chr2_2:7878396-7878415 | Msa0235110:three_prime_UTR | 45.0% | |
| AGCGGCGAAAATCATTGGAT+AGG | - | chr2_2:7878401-7878420 | Msa0235110:three_prime_UTR | 45.0% | |
| CGTCGTAGATCAATGTCAAG+AGG | + | chr2_2:7878437-7878456 | None:intergenic | 45.0% | |
| !! | CTTGTGCCATTTCACCATAG+TGG | + | chr2_2:7878469-7878488 | None:intergenic | 45.0% |
| !! | CGCTTCCGGAACATTGATTT+CGG | + | chr2_2:7878636-7878655 | None:intergenic | 45.0% |
| !! | TTGGATTGGGTTTGTTGCTG+TGG | - | chr2_2:7878703-7878722 | Msa0235110:CDS | 45.0% |
| GTTGCTGTGGCTAATGATGA+AGG | - | chr2_2:7878716-7878735 | Msa0235110:CDS | 45.0% | |
| GAAAGATGTGTTGGGGAGAA+GGG | - | chr2_2:7878739-7878758 | Msa0235110:CDS | 45.0% | |
| TTGTGTATTACGTGGGTCCA+AGG | - | chr2_2:7879278-7879297 | Msa0235110:intron | 45.0% | |
| TGTGTATTACGTGGGTCCAA+GGG | - | chr2_2:7879279-7879298 | Msa0235110:intron | 45.0% | |
| ! | GGAGGTCTAAAACAAGGGTT+TGG | + | chr2_2:7879314-7879333 | None:intergenic | 45.0% |
| AGGTCTTAAGTGAGGTGAGA+AGG | - | chr2_2:7880068-7880087 | Msa0235110:intron | 45.0% | |
| CTTAAGTGAGGTGAGAAGGT+TGG | - | chr2_2:7880072-7880091 | Msa0235110:intron | 45.0% | |
| ! | GTATTTGCTAGCCCTAGAGT+TGG | - | chr2_2:7880247-7880266 | Msa0235110:CDS | 45.0% |
| AATACCTTGTGCCAGTGTCA+TGG | - | chr2_2:7880572-7880591 | Msa0235110:CDS | 45.0% | |
| TTGTATGTTTGGCCCTCCTT+TGG | - | chr2_2:7880861-7880880 | Msa0235110:exon | 45.0% | |
| GGAAAGATGTGTTGGGGAGA+AGG | - | chr2_2:7878738-7878757 | Msa0235110:CDS | 50.0% | |
| !! | CGGGCACTGGTCTTATTGAA+GGG | + | chr2_2:7878932-7878951 | None:intergenic | 50.0% |
| !! | TCGGGCACTGGTCTTATTGA+AGG | + | chr2_2:7878933-7878952 | None:intergenic | 50.0% |
| ATTTACCTGGTTTCGGGCAC+TGG | + | chr2_2:7878945-7878964 | None:intergenic | 50.0% | |
| ATGACATTGTTGCGGCATGC+TGG | + | chr2_2:7879423-7879442 | None:intergenic | 50.0% | |
| AAGTGAGGTGAGAAGGTTGG+TGG | - | chr2_2:7880075-7880094 | Msa0235110:intron | 50.0% | |
| GGAGGCTTATTTGCATGGAG+TGG | - | chr2_2:7880459-7880478 | Msa0235110:CDS | 50.0% | |
| GCTTATTTGCATGGAGTGGC+AGG | - | chr2_2:7880463-7880482 | Msa0235110:CDS | 50.0% | |
| ATGGAGTGGCAGGAACACAA+GGG | - | chr2_2:7880473-7880492 | Msa0235110:CDS | 50.0% | |
| TCTACAACCCTCCATGACAC+TGG | + | chr2_2:7880586-7880605 | None:intergenic | 50.0% | |
| TAAGACCAGTGCCCGAAACC+AGG | - | chr2_2:7878937-7878956 | Msa0235110:CDS | 55.0% | |
| ACATTGTTGCGGCATGCTGG+TGG | + | chr2_2:7879420-7879439 | None:intergenic | 55.0% | |
| CATGGAGTGGCAGGAACACA+AGG | - | chr2_2:7880472-7880491 | Msa0235110:CDS | 55.0% | |
| ACCTTGTGCCAGTGTCATGG+AGG | - | chr2_2:7880575-7880594 | Msa0235110:CDS | 55.0% | |
| CCTTGTGCCAGTGTCATGGA+GGG | - | chr2_2:7880576-7880595 | Msa0235110:CDS | 55.0% | |
| ACGTGGGTCCAAGGGTGAAG+CGG | - | chr2_2:7879287-7879306 | Msa0235110:intron | 60.0% | |
| ! | GGTTTGGTCCGCTTCACCCT+TGG | + | chr2_2:7879298-7879317 | None:intergenic | 60.0% |
| CCCTCCATGACACTGGCACA+AGG | + | chr2_2:7880579-7880598 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_2 | gene | 7878287 | 7880900 | 7878287 | ID=Msa0235110;Name=Msa0235110 |
| chr2_2 | mRNA | 7878287 | 7880900 | 7878287 | ID=Msa0235110-mRNA-1;Parent=Msa0235110;Name=Msa0235110-mRNA-1;_AED=0.00;_eAED=0.00;_QI=33|1|1|1|1|1|2|225|414 |
| chr2_2 | exon | 7878287 | 7879117 | 7878287 | ID=Msa0235110-mRNA-1:exon:3444;Parent=Msa0235110-mRNA-1 |
| chr2_2 | exon | 7880229 | 7880900 | 7880229 | ID=Msa0235110-mRNA-1:exon:3443;Parent=Msa0235110-mRNA-1 |
| chr2_2 | five_prime_UTR | 7880868 | 7880900 | 7880868 | ID=Msa0235110-mRNA-1:five_prime_utr;Parent=Msa0235110-mRNA-1 |
| chr2_2 | CDS | 7880229 | 7880867 | 7880229 | ID=Msa0235110-mRNA-1:cds;Parent=Msa0235110-mRNA-1 |
| chr2_2 | CDS | 7878512 | 7879117 | 7878512 | ID=Msa0235110-mRNA-1:cds;Parent=Msa0235110-mRNA-1 |
| chr2_2 | three_prime_UTR | 7878287 | 7878511 | 7878287 | ID=Msa0235110-mRNA-1:three_prime_utr;Parent=Msa0235110-mRNA-1 |
| Gene Sequence |
| Protein sequence |
