Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0273500 | XP_003593747.2 | 96.860 | 414 | 13 | 0 | 1 | 414 | 20 | 433 | 0.0 | 826 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0273500 | sp|O49523|DSEL_ARATH | 61.461 | 397 | 148 | 3 | 20 | 413 | 19 | 413 | 0.0 | 520 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0140880 | Msa0273500 | 0.809119 | 2.214620e-50 | -8.615850e-47 |
| Msa0176900 | Msa0273500 | 0.801122 | 1.044847e-48 | -8.615850e-47 |
| Msa0192910 | Msa0273500 | 0.918915 | 8.637308e-87 | -8.615850e-47 |
| Msa0235110 | Msa0273500 | 0.914249 | 2.392853e-84 | -8.615850e-47 |
| Msa0273500 | Msa0288620 | 0.807684 | 4.481520e-50 | -8.615850e-47 |
| Msa0273500 | Msa0313730 | 0.991888 | 4.201424e-190 | -8.615850e-47 |
| Msa0273500 | Msa0326710 | 0.827967 | 1.167771e-54 | -8.615850e-47 |
| Msa0273500 | Msa0586450 | 0.801224 | 9.959632e-49 | -8.615850e-47 |
| Msa0273500 | Msa0612350 | 0.801124 | 1.044112e-48 | -8.615850e-47 |
| Msa0273500 | Msa1031390 | 0.819615 | 1.058516e-52 | -8.615850e-47 |
| Msa0273500 | Msa1219830 | 0.800708 | 1.269746e-48 | -8.615850e-47 |
| Msa0273500 | Msa1365820 | 0.804240 | 2.375291e-49 | -8.615850e-47 |
| Msa0273500 | Msa1382710 | 0.806498 | 7.988347e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0273500 | MtrunA17_Chr2g0283561 | 96.860 | 414 | 13 | 0 | 1 | 414 | 20 | 433 | 0.0 | 826 |
| Msa0273500 | MtrunA17_Chr4g0046001 | 62.374 | 396 | 141 | 4 | 19 | 412 | 12 | 401 | 8.58e-177 | 499 |
| Msa0273500 | MtrunA17_Chr4g0046011 | 61.364 | 396 | 145 | 4 | 19 | 412 | 3 | 392 | 2.44e-174 | 493 |
| Msa0273500 | MtrunA17_Chr4g0041311 | 47.044 | 406 | 180 | 5 | 24 | 404 | 32 | 427 | 3.30e-124 | 367 |
| Msa0273500 | MtrunA17_Chr4g0039301 | 43.489 | 407 | 197 | 8 | 20 | 404 | 100 | 495 | 1.07e-105 | 322 |
| Msa0273500 | MtrunA17_Chr7g0260671 | 40.714 | 420 | 221 | 6 | 8 | 406 | 62 | 474 | 3.73e-102 | 312 |
| Msa0273500 | MtrunA17_Chr7g0260681 | 40.113 | 354 | 184 | 6 | 20 | 352 | 74 | 420 | 9.81e-83 | 259 |
| Msa0273500 | MtrunA17_Chr5g0399641 | 34.635 | 384 | 194 | 9 | 20 | 369 | 135 | 495 | 6.44e-63 | 211 |
| Msa0273500 | MtrunA17_Chr7g0250611 | 36.986 | 365 | 184 | 15 | 19 | 361 | 74 | 414 | 9.01e-58 | 195 |
| Msa0273500 | MtrunA17_Chr7g0214711 | 35.143 | 350 | 179 | 10 | 20 | 347 | 105 | 428 | 3.51e-54 | 187 |
| Msa0273500 | MtrunA17_Chr7g0250561 | 34.975 | 406 | 197 | 15 | 14 | 370 | 63 | 450 | 2.78e-52 | 181 |
| Msa0273500 | MtrunA17_Chr4g0055691 | 33.071 | 381 | 197 | 9 | 19 | 369 | 128 | 480 | 7.81e-50 | 176 |
| Msa0273500 | MtrunA17_Chr2g0286301 | 30.769 | 182 | 91 | 8 | 131 | 310 | 89 | 237 | 7.60e-13 | 69.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0273500 | AT4G18550.2 | 61.461 | 397 | 148 | 3 | 20 | 413 | 36 | 430 | 0.0 | 520 |
| Msa0273500 | AT4G18550.1 | 61.461 | 397 | 148 | 3 | 20 | 413 | 19 | 413 | 0.0 | 520 |
| Msa0273500 | AT1G06250.1 | 52.685 | 391 | 178 | 2 | 20 | 406 | 5 | 392 | 2.96e-151 | 435 |
| Msa0273500 | AT4G18550.3 | 61.290 | 279 | 105 | 2 | 20 | 297 | 36 | 312 | 5.36e-126 | 367 |
| Msa0273500 | AT2G42690.1 | 44.096 | 415 | 203 | 5 | 18 | 412 | 2 | 407 | 1.43e-112 | 336 |
| Msa0273500 | AT1G06800.1 | 42.476 | 412 | 199 | 10 | 20 | 404 | 85 | 485 | 2.52e-102 | 313 |
| Msa0273500 | AT1G51440.1 | 43.468 | 421 | 195 | 11 | 19 | 408 | 86 | 494 | 1.68e-100 | 309 |
| Msa0273500 | AT1G06250.2 | 51.601 | 281 | 129 | 2 | 130 | 406 | 1 | 278 | 1.12e-99 | 300 |
| Msa0273500 | AT2G30550.2 | 40.380 | 421 | 214 | 10 | 10 | 404 | 91 | 500 | 2.93e-97 | 301 |
| Msa0273500 | AT1G06800.2 | 41.274 | 361 | 174 | 10 | 20 | 353 | 85 | 434 | 1.19e-84 | 266 |
| Msa0273500 | AT1G30370.1 | 37.857 | 420 | 226 | 8 | 6 | 404 | 100 | 505 | 7.15e-84 | 266 |
| Msa0273500 | AT2G30550.1 | 39.566 | 369 | 186 | 10 | 10 | 352 | 91 | 448 | 4.92e-82 | 259 |
| Msa0273500 | AT2G44810.2 | 35.884 | 379 | 180 | 13 | 20 | 361 | 86 | 438 | 8.01e-60 | 201 |
| Msa0273500 | AT2G44810.1 | 36.486 | 370 | 172 | 13 | 29 | 361 | 5 | 348 | 2.15e-58 | 195 |
| Msa0273500 | AT4G16820.1 | 35.602 | 382 | 187 | 8 | 18 | 368 | 125 | 478 | 3.74e-58 | 198 |
| Msa0273500 | AT1G05800.1 | 34.699 | 366 | 198 | 9 | 12 | 357 | 72 | 416 | 1.22e-55 | 191 |
| Msa0273500 | AT2G31690.1 | 34.770 | 348 | 189 | 7 | 20 | 347 | 88 | 417 | 9.80e-55 | 189 |
| Msa0273500 | AT5G18640.5 | 32.927 | 164 | 83 | 6 | 149 | 310 | 100 | 238 | 5.20e-15 | 75.5 |
| Msa0273500 | AT5G18640.4 | 31.868 | 182 | 90 | 7 | 131 | 310 | 101 | 250 | 1.16e-14 | 75.5 |
| Msa0273500 | AT5G18640.2 | 31.868 | 182 | 90 | 7 | 131 | 310 | 101 | 250 | 1.16e-14 | 75.5 |
| Msa0273500 | AT5G18640.1 | 32.927 | 164 | 83 | 6 | 149 | 310 | 100 | 238 | 1.17e-14 | 75.5 |
| Msa0273500 | AT5G18640.3 | 32.927 | 164 | 83 | 6 | 149 | 310 | 100 | 238 | 1.17e-14 | 75.5 |
Find 90 sgRNAs with CRISPR-Local
Find 158 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTCTTATTGAAGGGAGATTT+TGG | 0.169096 | 2_3:+5026529 | None:intergenic |
| GTTTCTGCTCCTAAAGTATT+TGG | 0.175913 | 2_3:-5026619 | Msa0273500:CDS |
| ACATCTGCATACCCAATAAA+AGG | 0.189119 | 2_3:+5025093 | None:intergenic |
| ATGGAGGGTTGTAGAGAATA+AGG | 0.217063 | 2_3:-5024860 | Msa0273500:CDS |
| ACATAGATTTACCTGGTTTC+GGG | 0.243614 | 2_3:+5026501 | None:intergenic |
| TGGATCTTCAGAAGTATAAA+TGG | 0.266518 | 2_3:+5026549 | None:intergenic |
| AACATAGATTTACCTGGTTT+CGG | 0.276273 | 2_3:+5026500 | None:intergenic |
| TAATGATCTTCAGTTTCTTT+TGG | 0.277450 | 2_3:-5026641 | Msa0273500:CDS |
| CTGCTATTACCAAATACTTT+AGG | 0.283364 | 2_3:+5026610 | None:intergenic |
| TTTGTTACAGAATATTTAAA+AGG | 0.323206 | 2_3:+5026856 | None:intergenic |
| TACCAACCTTGATGCACTTT+AGG | 0.338088 | 2_3:+5026574 | None:intergenic |
| CTTGGAGTAAGGAATCAAAT+TGG | 0.342591 | 2_3:-5026765 | Msa0273500:CDS |
| TACCCAATAAAAGGGTAGTT+TGG | 0.342990 | 2_3:+5025102 | None:intergenic |
| CGCTTCCGGAACATTGATTT+CGG | 0.366404 | 2_3:+5026816 | None:intergenic |
| ATTTACCTGGTTTCGGGCAC+TGG | 0.370820 | 2_3:+5026507 | None:intergenic |
| AGATGGTTCATGGAAGCTTA+TGG | 0.372107 | 2_3:-5024821 | Msa0273500:CDS |
| GCTATGCTGCTGTTGTTGTT+TGG | 0.373108 | 2_3:+5027090 | None:intergenic |
| GAAGGGATATTGTTATTGCT+TGG | 0.374037 | 2_3:-5026693 | Msa0273500:CDS |
| GAAATAAGCATAACTATAAC+AGG | 0.376230 | 2_3:-5025336 | Msa0273500:CDS |
| ACTATAACAGGTCACAGTTT+AGG | 0.384060 | 2_3:-5025324 | Msa0273500:CDS |
| CATAATCCACTATGGTGAAA+TGG | 0.388866 | 2_3:-5026989 | Msa0273500:CDS |
| CAAAGTTTGCAGGTAGTTGT+AGG | 0.393065 | 2_3:-5026927 | Msa0273500:CDS |
| TCGGGCACTGGTCTTATTGA+AGG | 0.398715 | 2_3:+5026519 | None:intergenic |
| AACTCAGCGGCGAAAATCAT+TGG | 0.405365 | 2_3:-5027053 | Msa0273500:CDS |
| GGAAAGATGTGTTGGGGAGA+AGG | 0.411910 | 2_3:-5026711 | Msa0273500:CDS |
| GACTTTATAATAAACGCTTC+CGG | 0.415146 | 2_3:+5026802 | None:intergenic |
| GTAAGGAATCAAATTGGATT+GGG | 0.415930 | 2_3:-5026759 | Msa0273500:CDS |
| AGTAAGGAATCAAATTGGAT+TGG | 0.423060 | 2_3:-5026760 | Msa0273500:CDS |
| GCTTATTTGCATGGAGTGGC+AGG | 0.430370 | 2_3:-5024988 | Msa0273500:CDS |
| TCTAGGGCTAGCAAATACTA+TGG | 0.437648 | 2_3:+5025209 | None:intergenic |
| GCAAATACTATGGCTGTAAC+TGG | 0.439803 | 2_3:+5025219 | None:intergenic |
| TTCAACAATCAGATGGTTCA+TGG | 0.443571 | 2_3:-5024831 | Msa0273500:CDS |
| AACGATACAAACTTTGGAAT+GGG | 0.445770 | 2_3:-5026665 | Msa0273500:CDS |
| GACTTCCGAAATCAATGTTC+CGG | 0.446184 | 2_3:-5026821 | Msa0273500:CDS |
| GAGAAAGCATCAAAGTTTGC+AGG | 0.452694 | 2_3:-5026937 | Msa0273500:CDS |
| ATCTAGAGAAGCTTGGAGTA+AGG | 0.456251 | 2_3:-5026776 | Msa0273500:CDS |
| CGACGTTACATAATCCACTA+TGG | 0.458056 | 2_3:-5026997 | Msa0273500:CDS |
| AAGTTTGTGTCACCAACTCT+AGG | 0.461380 | 2_3:+5025192 | None:intergenic |
| GAAAGATGTGTTGGGGAGAA+GGG | 0.463613 | 2_3:-5026710 | Msa0273500:CDS |
| GCAGTGGACATTGTTACAAA+TGG | 0.466972 | 2_3:-5025279 | Msa0273500:CDS |
| GAGAGGAACGATACAAACTT+TGG | 0.468667 | 2_3:-5026671 | Msa0273500:CDS |
| TCTATGTATTTGAAGAGTCC+AGG | 0.484311 | 2_3:-5025039 | Msa0273500:CDS |
| AATTTGGAGGCTTATTTGCA+TGG | 0.495411 | 2_3:-5024997 | Msa0273500:CDS |
| AGTCTTTATCTAGAGAAGCT+TGG | 0.498976 | 2_3:-5026783 | Msa0273500:CDS |
| TTTAAGTTGGCATAATTTGG+AGG | 0.502108 | 2_3:-5025010 | Msa0273500:CDS |
| TGCCAACTTAAAATATTCCC+TGG | 0.503206 | 2_3:+5025021 | None:intergenic |
| GATGAAGGGAAAGATGTGTT+GGG | 0.510788 | 2_3:-5026718 | Msa0273500:CDS |
| CTTGTGCCATTTCACCATAG+TGG | 0.510988 | 2_3:+5026983 | None:intergenic |
| GAGTAGCAATCATGATCAAA+AGG | 0.511049 | 2_3:-5027140 | Msa0273500:exon |
| TTGGATTGGGTTTGTTGCTG+TGG | 0.511970 | 2_3:-5026746 | Msa0273500:CDS |
| CTTAAGTGAGGTGAGAAGGT+TGG | 0.512596 | 2_3:-5025379 | Msa0273500:CDS |
| AAGTGAGGTGAGAAGGTTGG+TGG | 0.515539 | 2_3:-5025376 | Msa0273500:CDS |
| TGGAGGGTTGTAGAGAATAA+GGG | 0.516398 | 2_3:-5024859 | Msa0273500:CDS |
| GAACGATACAAACTTTGGAA+TGG | 0.518160 | 2_3:-5026666 | Msa0273500:CDS |
| ACAGCAGCATAGCAAACAAA+TGG | 0.523423 | 2_3:-5027080 | Msa0273500:CDS |
| CGGGCACTGGTCTTATTGAA+GGG | 0.526702 | 2_3:+5026520 | None:intergenic |
| GGTTGTAGAGAATAAGGGTA+TGG | 0.529061 | 2_3:-5024854 | Msa0273500:CDS |
| CATCTGCATACCCAATAAAA+GGG | 0.530668 | 2_3:+5025094 | None:intergenic |
| GTTGCTGTGGCTAATGATGA+AGG | 0.534220 | 2_3:-5026733 | Msa0273500:CDS |
| TGATGAAGGGAAAGATGTGT+TGG | 0.535789 | 2_3:-5026719 | Msa0273500:CDS |
| TTTATTGGGTATGCAGATGT+TGG | 0.539197 | 2_3:-5025090 | Msa0273500:CDS |
| CATGGAGTGGCAGGAACACA+AGG | 0.541108 | 2_3:-5024979 | Msa0273500:CDS |
| ATCCTAAAGTGCATCAAGGT+TGG | 0.542256 | 2_3:-5026576 | Msa0273500:CDS |
| TGCACTTGTGAATAAAACAT+TGG | 0.548353 | 2_3:-5024917 | Msa0273500:CDS |
| CTTGTGAATAAAACATTGGA+TGG | 0.548661 | 2_3:-5024913 | Msa0273500:CDS |
| TAAGACCAGTGCCCGAAACC+AGG | 0.563404 | 2_3:-5026512 | Msa0273500:intron |
| AGGTCTTAAGTGAGGTGAGA+AGG | 0.577836 | 2_3:-5025383 | Msa0273500:CDS |
| TCTACAACCCTCCATGACAC+TGG | 0.578955 | 2_3:+5024868 | None:intergenic |
| AGTTTGTGTCACCAACTCTA+GGG | 0.582592 | 2_3:+5025193 | None:intergenic |
| GTATTTGCTAGCCCTAGAGT+TGG | 0.582655 | 2_3:-5025204 | Msa0273500:CDS |
| AATACCTTGTGCCAGTGTCA+TGG | 0.585230 | 2_3:-5024879 | Msa0273500:CDS |
| CTATGTATTTGAAGAGTCCA+GGG | 0.587725 | 2_3:-5025038 | Msa0273500:CDS |
| GGAGGCTTATTTGCATGGAG+TGG | 0.592309 | 2_3:-5024992 | Msa0273500:CDS |
| GATATTGTTATTGCTTGGAG+AGG | 0.596230 | 2_3:-5026688 | Msa0273500:CDS |
| AATGATCCTAAAGTGCATCA+AGG | 0.597945 | 2_3:-5026580 | Msa0273500:CDS |
| ATGGAAGCTTATGGATCATG+AGG | 0.613240 | 2_3:-5024812 | Msa0273500:CDS |
| CCCTCCATGACACTGGCACA+AGG | 0.616143 | 2_3:+5024875 | None:intergenic |
| CGTCGTAGATCAATGTCAAG+AGG | 0.622571 | 2_3:+5027015 | None:intergenic |
| GTCGTAGATCAATGTCAAGA+GGG | 0.625735 | 2_3:+5027016 | None:intergenic |
| AGCGGCGAAAATCATTGGAT+AGG | 0.626832 | 2_3:-5027048 | Msa0273500:CDS |
| GGTATGGTTCAACAATCAGA+TGG | 0.636286 | 2_3:-5024838 | Msa0273500:CDS |
| ACCTTGTGCCAGTGTCATGG+AGG | 0.647161 | 2_3:-5024876 | Msa0273500:CDS |
| ATTTGTGCAGGTCTTAAGTG+AGG | 0.649606 | 2_3:-5025391 | Msa0273500:intron |
| TAGCAATCATGATCAAAAGG+TGG | 0.653386 | 2_3:-5027137 | Msa0273500:exon |
| TTGCTGTGGCTAATGATGAA+GGG | 0.655838 | 2_3:-5026732 | Msa0273500:CDS |
| ATGAAGGGAAAGATGTGTTG+GGG | 0.669413 | 2_3:-5026717 | Msa0273500:CDS |
| CCTTGTGCCAGTGTCATGGA+GGG | 0.679650 | 2_3:-5024875 | Msa0273500:CDS |
| AATTGCAACTCTAAATGCAG+TGG | 0.688195 | 2_3:-5025295 | Msa0273500:CDS |
| AACAAATGGCAACAACTCAG+CGG | 0.706384 | 2_3:-5027066 | Msa0273500:CDS |
| ATGGAGTGGCAGGAACACAA+GGG | 0.725550 | 2_3:-5024978 | Msa0273500:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAGTATTTTTTTCTTTAAAA+CGG | - | chr2_3:5025365-5025384 | Msa0273500:CDS | 10.0% |
| !!! | ATATCAATTATTTTATTTGA+GGG | + | chr2_3:5025754-5025773 | None:intergenic | 10.0% |
| !!! | TATATCAATTATTTTATTTG+AGG | + | chr2_3:5025755-5025774 | None:intergenic | 10.0% |
| !! | AACCAAAAAAAATATTAAAT+TGG | - | chr2_3:5025983-5026002 | Msa0273500:intron | 10.0% |
| !!! | AACCAATTTAATATTTTTTT+TGG | + | chr2_3:5025988-5026007 | None:intergenic | 10.0% |
| !! | TAAACAAAAATTTATATTTG+TGG | - | chr2_3:5026307-5026326 | Msa0273500:intron | 10.0% |
| !! | AACACTTTAATTAAAAAAAT+TGG | - | chr2_3:5026396-5026415 | Msa0273500:intron | 10.0% |
| !!! | TCTAAAGTTTTTTTAGAAAA+TGG | - | chr2_3:5024960-5024979 | Msa0273500:CDS | 15.0% |
| !! | TTTGTTACAGAATATTTAAA+AGG | + | chr2_3:5024990-5025009 | None:intergenic | 15.0% |
| !!! | AGTATTTTTTTCTTTAAAAC+GGG | - | chr2_3:5025366-5025385 | Msa0273500:CDS | 15.0% |
| !! | CATAATGAAAAACTAATATA+TGG | + | chr2_3:5025574-5025593 | None:intergenic | 15.0% |
| !! | AAAAAAAAAATCAAGGAAAA+AGG | - | chr2_3:5025728-5025747 | Msa0273500:intron | 15.0% |
| !!! | AGATTATATTAGTTTGATAT+TGG | + | chr2_3:5026209-5026228 | None:intergenic | 15.0% |
| !! | AAAATAAAAATTCAAGTGTT+TGG | - | chr2_3:5026239-5026258 | Msa0273500:intron | 15.0% |
| !!! | GTATTTTTTTCTTTAAAACG+GGG | - | chr2_3:5025367-5025386 | Msa0273500:CDS | 20.0% |
| !!! | TATTTTTTTCTTTAAAACGG+GGG | - | chr2_3:5025368-5025387 | Msa0273500:CDS | 20.0% |
| !!! | TGATTTTAGCAGTTAAAATA+TGG | + | chr2_3:5025619-5025638 | None:intergenic | 20.0% |
| !! | TTTAACTGCTAAAATCAATA+TGG | - | chr2_3:5025622-5025641 | Msa0273500:intron | 20.0% |
| !!! | AACCATATTGTTTTTTTCAA+GGG | + | chr2_3:5025653-5025672 | None:intergenic | 20.0% |
| !!! | AAACCATATTGTTTTTTTCA+AGG | + | chr2_3:5025654-5025673 | None:intergenic | 20.0% |
| !!! | TTCCTTGATTTTTTTTTTTG+AGG | + | chr2_3:5025726-5025745 | None:intergenic | 20.0% |
| !! | AGAGAATAATATTAGAAAAG+AGG | - | chr2_3:5025786-5025805 | Msa0273500:intron | 20.0% |
| !!! | TATATGACTATTTCTTTAGT+TGG | + | chr2_3:5026051-5026070 | None:intergenic | 20.0% |
| !!! | TCTTATTTACAAGTTTATTG+TGG | - | chr2_3:5026075-5026094 | Msa0273500:intron | 20.0% |
| !!! | AAATGATTGATTAGTTGTTA+AGG | - | chr2_3:5026266-5026285 | Msa0273500:intron | 20.0% |
| !!! | ATTTTTGTTTATTTGCTTGA+TGG | + | chr2_3:5026298-5026317 | None:intergenic | 20.0% |
| !!! | TATTTTAAGTTGGCATAATT+TGG | - | chr2_3:5026830-5026849 | Msa0273500:CDS | 20.0% |
| !!! | TATCATTGTTTTTTAGTTTG+AGG | - | chr2_3:5027109-5027128 | Msa0273500:CDS | 20.0% |
| !! | TAATGATCTTCAGTTTCTTT+TGG | - | chr2_3:5025202-5025221 | Msa0273500:CDS | 25.0% |
| ! | AATACTAACATAGATTTACC+TGG | + | chr2_3:5025352-5025371 | None:intergenic | 25.0% |
| ! | ATGCTCAATAAAGCAAATAT+AGG | - | chr2_3:5025468-5025487 | Msa0273500:intron | 25.0% |
| ! | CATATATCTCTTTCAAAGTT+TGG | + | chr2_3:5025525-5025544 | None:intergenic | 25.0% |
| ! | TTCCCTTGAAAAAAACAATA+TGG | - | chr2_3:5025648-5025667 | Msa0273500:intron | 25.0% |
| !!! | TTTTTTGAGGTCTAAAACAA+GGG | + | chr2_3:5025713-5025732 | None:intergenic | 25.0% |
| !!! | TTTTTTTGAGGTCTAAAACA+AGG | + | chr2_3:5025714-5025733 | None:intergenic | 25.0% |
| ! | GACCTCAAAAAAAAAAATCA+AGG | - | chr2_3:5025721-5025740 | Msa0273500:intron | 25.0% |
| !!! | ATATTTTTATCATGTGAGCT+AGG | + | chr2_3:5025874-5025893 | None:intergenic | 25.0% |
| !! | AATAATTTGACCTTTGGAAA+AGG | + | chr2_3:5026019-5026038 | None:intergenic | 25.0% |
| ! | AATAATAGTTTAGTCCATGT+AGG | + | chr2_3:5026158-5026177 | None:intergenic | 25.0% |
| ! | GAAATAAGCATAACTATAAC+AGG | - | chr2_3:5026507-5026526 | Msa0273500:intron | 25.0% |
| GACTTTATAATAAACGCTTC+CGG | + | chr2_3:5025044-5025063 | None:intergenic | 30.0% | |
| AGTAAGGAATCAAATTGGAT+TGG | - | chr2_3:5025083-5025102 | Msa0273500:CDS | 30.0% | |
| GTAAGGAATCAAATTGGATT+GGG | - | chr2_3:5025084-5025103 | Msa0273500:CDS | 30.0% | |
| !! | AACGATACAAACTTTGGAAT+GGG | - | chr2_3:5025178-5025197 | Msa0273500:CDS | 30.0% |
| CTGCTATTACCAAATACTTT+AGG | + | chr2_3:5025236-5025255 | None:intergenic | 30.0% | |
| ! | TGGATCTTCAGAAGTATAAA+TGG | + | chr2_3:5025297-5025316 | None:intergenic | 30.0% |
| AACATAGATTTACCTGGTTT+CGG | + | chr2_3:5025346-5025365 | None:intergenic | 30.0% | |
| AACCAGATGGTTTATGAAAA+AGG | + | chr2_3:5025501-5025520 | None:intergenic | 30.0% | |
| ! | AATATGGTTTGTGTATTACG+TGG | - | chr2_3:5025664-5025683 | Msa0273500:intron | 30.0% |
| ! | ATATGGTTTGTGTATTACGT+GGG | - | chr2_3:5025665-5025684 | Msa0273500:intron | 30.0% |
| CCAAAAATATGACATTGTTG+CGG | + | chr2_3:5025823-5025842 | None:intergenic | 30.0% | |
| TGTGGAAATAATTTGACCTT+TGG | + | chr2_3:5026025-5026044 | None:intergenic | 30.0% | |
| !! | TATTTCTTTAGTTGGTCTTG+TGG | + | chr2_3:5026043-5026062 | None:intergenic | 30.0% |
| TAGTGGTAAGAATTCAACTT+AGG | - | chr2_3:5026361-5026380 | Msa0273500:intron | 30.0% | |
| AGAATTCAACTTAGGTAACA+TGG | - | chr2_3:5026369-5026388 | Msa0273500:intron | 30.0% | |
| !! | TGATAATTATCGATTTGTGC+AGG | - | chr2_3:5026440-5026459 | Msa0273500:intron | 30.0% |
| ! | TTCCAAACTACCCTTTTATT+GGG | - | chr2_3:5026739-5026758 | Msa0273500:CDS | 30.0% |
| !! | TTTAAGTTGGCATAATTTGG+AGG | - | chr2_3:5026833-5026852 | Msa0273500:CDS | 30.0% |
| TGCACTTGTGAATAAAACAT+TGG | - | chr2_3:5026926-5026945 | Msa0273500:CDS | 30.0% | |
| CTTGTGAATAAAACATTGGA+TGG | - | chr2_3:5026930-5026949 | Msa0273500:CDS | 30.0% | |
| GAGTAGCAATCATGATCAAA+AGG | - | chr2_3:5024703-5024722 | Msa0273500:three_prime_UTR | 35.0% | |
| TAGCAATCATGATCAAAAGG+TGG | - | chr2_3:5024706-5024725 | Msa0273500:three_prime_UTR | 35.0% | |
| CATAATCCACTATGGTGAAA+TGG | - | chr2_3:5024854-5024873 | Msa0273500:CDS | 35.0% | |
| AGTCTTTATCTAGAGAAGCT+TGG | - | chr2_3:5025060-5025079 | Msa0273500:CDS | 35.0% | |
| CTTGGAGTAAGGAATCAAAT+TGG | - | chr2_3:5025078-5025097 | Msa0273500:CDS | 35.0% | |
| ! | GAAGGGATATTGTTATTGCT+TGG | - | chr2_3:5025150-5025169 | Msa0273500:CDS | 35.0% |
| ! | GATATTGTTATTGCTTGGAG+AGG | - | chr2_3:5025155-5025174 | Msa0273500:CDS | 35.0% |
| ! | GAACGATACAAACTTTGGAA+TGG | - | chr2_3:5025177-5025196 | Msa0273500:CDS | 35.0% |
| ! | GTTTCTGCTCCTAAAGTATT+TGG | - | chr2_3:5025224-5025243 | Msa0273500:CDS | 35.0% |
| AATGATCCTAAAGTGCATCA+AGG | - | chr2_3:5025263-5025282 | Msa0273500:CDS | 35.0% | |
| !! | GTCTTATTGAAGGGAGATTT+TGG | + | chr2_3:5025317-5025336 | None:intergenic | 35.0% |
| ACATAGATTTACCTGGTTTC+GGG | + | chr2_3:5025345-5025364 | None:intergenic | 35.0% | |
| !! | TGCCTTTTTCATAAACCATC+TGG | - | chr2_3:5025496-5025515 | Msa0273500:intron | 35.0% |
| ! | CCGCAACAATGTCATATTTT+TGG | - | chr2_3:5025820-5025839 | Msa0273500:intron | 35.0% |
| GTTAGTTGAGACGTTATGAT+AGG | - | chr2_3:5025901-5025920 | Msa0273500:intron | 35.0% | |
| ATCTCACACATACAAAATCG+AGG | + | chr2_3:5025935-5025954 | None:intergenic | 35.0% | |
| ! | TTAGCGAAAACCTTTTCCAA+AGG | - | chr2_3:5026006-5026025 | Msa0273500:intron | 35.0% |
| AGCCTACAAATGTGTTAGAT+TGG | - | chr2_3:5026132-5026151 | Msa0273500:intron | 35.0% | |
| ATGTCTCATGGACATTCAAT+CGG | + | chr2_3:5026336-5026355 | None:intergenic | 35.0% | |
| TCCATGAGACATCAATTTAG+TGG | - | chr2_3:5026344-5026363 | Msa0273500:intron | 35.0% | |
| ACCACTAAATTGATGTCTCA+TGG | + | chr2_3:5026348-5026367 | None:intergenic | 35.0% | |
| ACTATAACAGGTCACAGTTT+AGG | - | chr2_3:5026519-5026538 | Msa0273500:CDS | 35.0% | |
| AATTGCAACTCTAAATGCAG+TGG | - | chr2_3:5026548-5026567 | Msa0273500:CDS | 35.0% | |
| ! | GTTCCAAACTACCCTTTTAT+TGG | - | chr2_3:5026738-5026757 | Msa0273500:CDS | 35.0% |
| TACCCAATAAAAGGGTAGTT+TGG | + | chr2_3:5026744-5026763 | None:intergenic | 35.0% | |
| CATCTGCATACCCAATAAAA+GGG | + | chr2_3:5026752-5026771 | None:intergenic | 35.0% | |
| ACATCTGCATACCCAATAAA+AGG | + | chr2_3:5026753-5026772 | None:intergenic | 35.0% | |
| TTTATTGGGTATGCAGATGT+TGG | - | chr2_3:5026753-5026772 | Msa0273500:CDS | 35.0% | |
| TCTATGTATTTGAAGAGTCC+AGG | - | chr2_3:5026804-5026823 | Msa0273500:CDS | 35.0% | |
| CTATGTATTTGAAGAGTCCA+GGG | - | chr2_3:5026805-5026824 | Msa0273500:CDS | 35.0% | |
| !! | GTCCAGGGAATATTTTAAGT+TGG | - | chr2_3:5026820-5026839 | Msa0273500:CDS | 35.0% |
| TGCCAACTTAAAATATTCCC+TGG | + | chr2_3:5026825-5026844 | None:intergenic | 35.0% | |
| AATTTGGAGGCTTATTTGCA+TGG | - | chr2_3:5026846-5026865 | Msa0273500:CDS | 35.0% | |
| TTCAACAATCAGATGGTTCA+TGG | - | chr2_3:5027012-5027031 | Msa0273500:CDS | 35.0% | |
| ACAGCAGCATAGCAAACAAA+TGG | - | chr2_3:5024763-5024782 | Msa0273500:three_prime_UTR | 40.0% | |
| AACAAATGGCAACAACTCAG+CGG | - | chr2_3:5024777-5024796 | Msa0273500:three_prime_UTR | 40.0% | |
| GTCGTAGATCAATGTCAAGA+GGG | + | chr2_3:5024830-5024849 | None:intergenic | 40.0% | |
| CGACGTTACATAATCCACTA+TGG | - | chr2_3:5024846-5024865 | Msa0273500:CDS | 40.0% | |
| !! | GAGAAAGCATCAAAGTTTGC+AGG | - | chr2_3:5024906-5024925 | Msa0273500:CDS | 40.0% |
| CAAAGTTTGCAGGTAGTTGT+AGG | - | chr2_3:5024916-5024935 | Msa0273500:CDS | 40.0% | |
| GACTTCCGAAATCAATGTTC+CGG | - | chr2_3:5025022-5025041 | Msa0273500:CDS | 40.0% | |
| ATCTAGAGAAGCTTGGAGTA+AGG | - | chr2_3:5025067-5025086 | Msa0273500:CDS | 40.0% | |
| TTGCTGTGGCTAATGATGAA+GGG | - | chr2_3:5025111-5025130 | Msa0273500:CDS | 40.0% | |
| TGATGAAGGGAAAGATGTGT+TGG | - | chr2_3:5025124-5025143 | Msa0273500:CDS | 40.0% | |
| GATGAAGGGAAAGATGTGTT+GGG | - | chr2_3:5025125-5025144 | Msa0273500:CDS | 40.0% | |
| ATGAAGGGAAAGATGTGTTG+GGG | - | chr2_3:5025126-5025145 | Msa0273500:CDS | 40.0% | |
| GAGAGGAACGATACAAACTT+TGG | - | chr2_3:5025172-5025191 | Msa0273500:CDS | 40.0% | |
| ATCCTAAAGTGCATCAAGGT+TGG | - | chr2_3:5025267-5025286 | Msa0273500:CDS | 40.0% | |
| TACCAACCTTGATGCACTTT+AGG | + | chr2_3:5025272-5025291 | None:intergenic | 40.0% | |
| TTCAAAGTTTGGCAACCAGA+TGG | + | chr2_3:5025514-5025533 | None:intergenic | 40.0% | |
| ! | TGAGGTCTAAAACAAGGGTT+TGG | + | chr2_3:5025708-5025727 | None:intergenic | 40.0% |
| GGCCAATCTAACACATTTGT+AGG | + | chr2_3:5026137-5026156 | None:intergenic | 40.0% | |
| !! | ATGTGTTAGATTGGCCTACA+TGG | - | chr2_3:5026141-5026160 | Msa0273500:intron | 40.0% |
| ATTTGTGCAGGTCTTAAGTG+AGG | - | chr2_3:5026452-5026471 | Msa0273500:intron | 40.0% | |
| GCAGTGGACATTGTTACAAA+TGG | - | chr2_3:5026564-5026583 | Msa0273500:CDS | 40.0% | |
| GCAAATACTATGGCTGTAAC+TGG | + | chr2_3:5026627-5026646 | None:intergenic | 40.0% | |
| ! | TCTAGGGCTAGCAAATACTA+TGG | + | chr2_3:5026637-5026656 | None:intergenic | 40.0% |
| AGTTTGTGTCACCAACTCTA+GGG | + | chr2_3:5026653-5026672 | None:intergenic | 40.0% | |
| AAGTTTGTGTCACCAACTCT+AGG | + | chr2_3:5026654-5026673 | None:intergenic | 40.0% | |
| ATGGAGGGTTGTAGAGAATA+AGG | - | chr2_3:5026983-5027002 | Msa0273500:CDS | 40.0% | |
| TGGAGGGTTGTAGAGAATAA+GGG | - | chr2_3:5026984-5027003 | Msa0273500:CDS | 40.0% | |
| GGTTGTAGAGAATAAGGGTA+TGG | - | chr2_3:5026989-5027008 | Msa0273500:CDS | 40.0% | |
| GGTATGGTTCAACAATCAGA+TGG | - | chr2_3:5027005-5027024 | Msa0273500:CDS | 40.0% | |
| AGATGGTTCATGGAAGCTTA+TGG | - | chr2_3:5027022-5027041 | Msa0273500:CDS | 40.0% | |
| ATGGAAGCTTATGGATCATG+AGG | - | chr2_3:5027031-5027050 | Msa0273500:CDS | 40.0% | |
| ! | GCTATGCTGCTGTTGTTGTT+TGG | + | chr2_3:5024756-5024775 | None:intergenic | 45.0% |
| AACTCAGCGGCGAAAATCAT+TGG | - | chr2_3:5024790-5024809 | Msa0273500:exon | 45.0% | |
| AGCGGCGAAAATCATTGGAT+AGG | - | chr2_3:5024795-5024814 | Msa0273500:exon | 45.0% | |
| CGTCGTAGATCAATGTCAAG+AGG | + | chr2_3:5024831-5024850 | None:intergenic | 45.0% | |
| !! | CTTGTGCCATTTCACCATAG+TGG | + | chr2_3:5024863-5024882 | None:intergenic | 45.0% |
| !! | CGCTTCCGGAACATTGATTT+CGG | + | chr2_3:5025030-5025049 | None:intergenic | 45.0% |
| !! | TTGGATTGGGTTTGTTGCTG+TGG | - | chr2_3:5025097-5025116 | Msa0273500:CDS | 45.0% |
| GTTGCTGTGGCTAATGATGA+AGG | - | chr2_3:5025110-5025129 | Msa0273500:CDS | 45.0% | |
| GAAAGATGTGTTGGGGAGAA+GGG | - | chr2_3:5025133-5025152 | Msa0273500:CDS | 45.0% | |
| TTGTGTATTACGTGGGTCCA+AGG | - | chr2_3:5025672-5025691 | Msa0273500:intron | 45.0% | |
| TGTGTATTACGTGGGTCCAA+GGG | - | chr2_3:5025673-5025692 | Msa0273500:intron | 45.0% | |
| AGGTCTTAAGTGAGGTGAGA+AGG | - | chr2_3:5026460-5026479 | Msa0273500:intron | 45.0% | |
| CTTAAGTGAGGTGAGAAGGT+TGG | - | chr2_3:5026464-5026483 | Msa0273500:intron | 45.0% | |
| ! | GTATTTGCTAGCCCTAGAGT+TGG | - | chr2_3:5026639-5026658 | Msa0273500:CDS | 45.0% |
| AATACCTTGTGCCAGTGTCA+TGG | - | chr2_3:5026964-5026983 | Msa0273500:CDS | 45.0% | |
| GGAAAGATGTGTTGGGGAGA+AGG | - | chr2_3:5025132-5025151 | Msa0273500:CDS | 50.0% | |
| !! | CGGGCACTGGTCTTATTGAA+GGG | + | chr2_3:5025326-5025345 | None:intergenic | 50.0% |
| !! | TCGGGCACTGGTCTTATTGA+AGG | + | chr2_3:5025327-5025346 | None:intergenic | 50.0% |
| ATTTACCTGGTTTCGGGCAC+TGG | + | chr2_3:5025339-5025358 | None:intergenic | 50.0% | |
| ATGACATTGTTGCGGCATGC+TGG | + | chr2_3:5025815-5025834 | None:intergenic | 50.0% | |
| AAGTGAGGTGAGAAGGTTGG+TGG | - | chr2_3:5026467-5026486 | Msa0273500:intron | 50.0% | |
| GGAGGCTTATTTGCATGGAG+TGG | - | chr2_3:5026851-5026870 | Msa0273500:CDS | 50.0% | |
| GCTTATTTGCATGGAGTGGC+AGG | - | chr2_3:5026855-5026874 | Msa0273500:CDS | 50.0% | |
| ATGGAGTGGCAGGAACACAA+GGG | - | chr2_3:5026865-5026884 | Msa0273500:CDS | 50.0% | |
| TCTACAACCCTCCATGACAC+TGG | + | chr2_3:5026978-5026997 | None:intergenic | 50.0% | |
| TAAGACCAGTGCCCGAAACC+AGG | - | chr2_3:5025331-5025350 | Msa0273500:CDS | 55.0% | |
| ACATTGTTGCGGCATGCTGG+TGG | + | chr2_3:5025812-5025831 | None:intergenic | 55.0% | |
| CATGGAGTGGCAGGAACACA+AGG | - | chr2_3:5026864-5026883 | Msa0273500:CDS | 55.0% | |
| ACCTTGTGCCAGTGTCATGG+AGG | - | chr2_3:5026967-5026986 | Msa0273500:CDS | 55.0% | |
| CCTTGTGCCAGTGTCATGGA+GGG | - | chr2_3:5026968-5026987 | Msa0273500:CDS | 55.0% | |
| ACGTGGGTCCAAGGGTGAAG+CGG | - | chr2_3:5025681-5025700 | Msa0273500:intron | 60.0% | |
| ! | GGTTTGGTCCGCTTCACCCT+TGG | + | chr2_3:5025692-5025711 | None:intergenic | 60.0% |
| CCCTCCATGACACTGGCACA+AGG | + | chr2_3:5026971-5026990 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_3 | gene | 5024683 | 5027182 | 5024683 | ID=Msa0273500;Name=Msa0273500 |
| chr2_3 | mRNA | 5024683 | 5027182 | 5024683 | ID=Msa0273500-mRNA-1;Parent=Msa0273500;Name=Msa0273500-mRNA-1;_AED=0.00;_eAED=0.00;_QI=31|1|1|1|1|1|2|115|414 |
| chr2_3 | exon | 5024683 | 5025403 | 5024683 | ID=Msa0273500-mRNA-1:exon:2488;Parent=Msa0273500-mRNA-1 |
| chr2_3 | exon | 5026513 | 5027182 | 5026513 | ID=Msa0273500-mRNA-1:exon:2487;Parent=Msa0273500-mRNA-1 |
| chr2_3 | five_prime_UTR | 5027152 | 5027182 | 5027152 | ID=Msa0273500-mRNA-1:five_prime_utr;Parent=Msa0273500-mRNA-1 |
| chr2_3 | CDS | 5026513 | 5027151 | 5026513 | ID=Msa0273500-mRNA-1:cds;Parent=Msa0273500-mRNA-1 |
| chr2_3 | CDS | 5024798 | 5025403 | 5024798 | ID=Msa0273500-mRNA-1:cds;Parent=Msa0273500-mRNA-1 |
| chr2_3 | three_prime_UTR | 5024683 | 5024797 | 5024683 | ID=Msa0273500-mRNA-1:three_prime_utr;Parent=Msa0273500-mRNA-1 |
| Gene Sequence |
| Protein sequence |
