Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0034830 | XP_013469261.1 | 87.879 | 429 | 18 | 3 | 1 | 427 | 1 | 397 | 0.0 | 735 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0016040 | Msa0034830 | 0.823260 | 1.524011e-53 | -8.615850e-47 |
| Msa0019930 | Msa0034830 | 0.810046 | 1.400155e-50 | -8.615850e-47 |
| Msa0020540 | Msa0034830 | 0.805117 | 1.558292e-49 | -8.615850e-47 |
| Msa0027280 | Msa0034830 | 0.804268 | 2.343643e-49 | -8.615850e-47 |
| Msa0034830 | Msa0035140 | 0.827620 | 1.414402e-54 | -8.615850e-47 |
| Msa0034830 | Msa0037740 | 0.805734 | 1.157131e-49 | -8.615850e-47 |
| Msa0034830 | Msa0067060 | 0.820593 | 6.319971e-53 | -8.615850e-47 |
| Msa0034830 | Msa0068150 | 0.817195 | 3.740403e-52 | -8.615850e-47 |
| Msa0034830 | Msa0075530 | 0.806673 | 7.339916e-50 | -8.615850e-47 |
| Msa0034830 | Msa0077560 | 0.803304 | 3.715884e-49 | -8.615850e-47 |
| Msa0034830 | Msa0081980 | 0.804783 | 1.830107e-49 | -8.615850e-47 |
| Msa0034830 | Msa0082020 | 0.804589 | 2.009390e-49 | -8.615850e-47 |
| Msa0034830 | Msa0115550 | 0.830188 | 3.379675e-55 | -8.615850e-47 |
| Msa0034830 | Msa0125590 | 0.805433 | 1.338351e-49 | -8.615850e-47 |
| Msa0034830 | Msa0140200 | 0.828537 | 8.508043e-55 | -8.615850e-47 |
| Msa0034830 | Msa0140380 | 0.828437 | 8.992713e-55 | -8.615850e-47 |
| Msa0034830 | Msa0141640 | 0.819533 | 1.104668e-52 | -8.615850e-47 |
| Msa0034830 | Msa0143670 | 0.827474 | 1.533678e-54 | -8.615850e-47 |
| Msa0034830 | Msa0156050 | 0.809041 | 2.301252e-50 | -8.615850e-47 |
| Msa0034830 | Msa0159590 | 0.817481 | 3.225093e-52 | -8.615850e-47 |
| Msa0034830 | Msa0170070 | 0.820725 | 5.892493e-53 | -8.615850e-47 |
| Msa0034830 | Msa0172480 | 0.811479 | 6.857831e-51 | -8.615850e-47 |
| Msa0034830 | Msa0172510 | 0.818553 | 1.846094e-52 | -8.615850e-47 |
| Msa0034830 | Msa0174290 | 0.819731 | 9.956712e-53 | -8.615850e-47 |
| Msa0034830 | Msa0194630 | 0.823015 | 1.739057e-53 | -8.615850e-47 |
| Msa0034830 | Msa0218020 | 0.804313 | 2.294152e-49 | -8.615850e-47 |
| Msa0034830 | Msa0232760 | 0.815145 | 1.074270e-51 | -8.615850e-47 |
| Msa0034830 | Msa0317170 | 0.800199 | 1.612111e-48 | -8.615850e-47 |
| Msa0034830 | Msa0367150 | 0.826898 | 2.106316e-54 | -8.615850e-47 |
| Msa0034830 | Msa0373170 | 0.828913 | 6.902771e-55 | -8.615850e-47 |
| Msa0034830 | Msa0373500 | 0.813503 | 2.476939e-51 | -8.615850e-47 |
| Msa0034830 | Msa0380490 | 0.812928 | 3.311389e-51 | -8.615850e-47 |
| Msa0034830 | Msa0381730 | 0.801985 | 6.953987e-49 | -8.615850e-47 |
| Msa0034830 | Msa0382230 | 0.804729 | 1.878178e-49 | -8.615850e-47 |
| Msa0034830 | Msa0383000 | 0.828480 | 8.780773e-55 | -8.615850e-47 |
| Msa0034830 | Msa0404770 | 0.810288 | 1.242056e-50 | -8.615850e-47 |
| Msa0034830 | Msa0416160 | 0.811351 | 7.313560e-51 | -8.615850e-47 |
| Msa0034830 | Msa0420670 | 0.800408 | 1.461736e-48 | -8.615850e-47 |
| Msa0034830 | Msa0421750 | 0.802926 | 4.449100e-49 | -8.615850e-47 |
| Msa0034830 | Msa0422050 | 0.810600 | 1.063170e-50 | -8.615850e-47 |
| Msa0034830 | Msa0430000 | 0.806727 | 7.147772e-50 | -8.615850e-47 |
| Msa0034830 | Msa0431200 | 0.804166 | 2.461156e-49 | -8.615850e-47 |
| Msa0034830 | Msa0432010 | 0.810513 | 1.110338e-50 | -8.615850e-47 |
| Msa0034830 | Msa0433150 | 0.821550 | 3.804295e-53 | -8.615850e-47 |
| Msa0034830 | Msa0433760 | 0.806949 | 6.416871e-50 | -8.615850e-47 |
| Msa0034830 | Msa0456670 | 0.805572 | 1.251491e-49 | -8.615850e-47 |
| Msa0034830 | Msa0467690 | 0.825899 | 3.645097e-54 | -8.615850e-47 |
| Msa0034830 | Msa0468620 | 0.819862 | 9.295315e-53 | -8.615850e-47 |
| Msa0034830 | Msa0468700 | 0.800942 | 1.137395e-48 | -8.615850e-47 |
| Msa0034830 | Msa0476280 | 0.806374 | 8.487094e-50 | -8.615850e-47 |
| Msa0034830 | Msa0500570 | 0.816544 | 5.235091e-52 | -8.615850e-47 |
| Msa0034830 | Msa0506540 | 0.821856 | 3.231374e-53 | -8.615850e-47 |
| Msa0034830 | Msa0507810 | 0.802991 | 4.313887e-49 | -8.615850e-47 |
| Msa0034830 | Msa0507920 | 0.820079 | 8.290521e-53 | -8.615850e-47 |
| Msa0034830 | Msa0512530 | 0.800440 | 1.439931e-48 | -8.615850e-47 |
| Msa0034830 | Msa0514020 | 0.811705 | 6.125341e-51 | -8.615850e-47 |
| Msa0034830 | Msa0514500 | 0.820947 | 5.240645e-53 | -8.615850e-47 |
| Msa0034830 | Msa0514580 | 0.803769 | 2.976254e-49 | -8.615850e-47 |
| Msa0034830 | Msa0520870 | 0.824881 | 6.346957e-54 | -8.615850e-47 |
| Msa0034830 | Msa0521680 | 0.822092 | 2.849360e-53 | -8.615850e-47 |
| Msa0034830 | Msa0524520 | 0.825608 | 4.272774e-54 | -8.615850e-47 |
| Msa0034830 | Msa0531960 | 0.837596 | 4.734329e-57 | -8.615850e-47 |
| Msa0034830 | Msa0580200 | 0.821428 | 4.058370e-53 | -8.615850e-47 |
| Msa0034830 | Msa0580810 | 0.827956 | 1.174708e-54 | -8.615850e-47 |
| Msa0034830 | Msa0585340 | 0.807822 | 4.188748e-50 | -8.615850e-47 |
| Msa0034830 | Msa0621710 | 0.810253 | 1.263691e-50 | -8.615850e-47 |
| Msa0034830 | Msa0625620 | 0.838952 | 2.117623e-57 | -8.615850e-47 |
| Msa0034830 | Msa0640800 | 0.805335 | 1.402919e-49 | -8.615850e-47 |
| Msa0034830 | Msa0647050 | 0.803862 | 2.846789e-49 | -8.615850e-47 |
| Msa0034830 | Msa0652710 | 0.806937 | 6.453470e-50 | -8.615850e-47 |
| Msa0034830 | Msa0659150 | 0.807615 | 4.635718e-50 | -8.615850e-47 |
| Msa0034830 | Msa0666700 | 0.832778 | 7.783800e-56 | -8.615850e-47 |
| Msa0034830 | Msa0666990 | 0.800756 | 1.241221e-48 | -8.615850e-47 |
| Msa0034830 | Msa0668900 | 0.816937 | 4.273485e-52 | -8.615850e-47 |
| Msa0034830 | Msa0698730 | 0.800656 | 1.301340e-48 | -8.615850e-47 |
| Msa0034830 | Msa0709440 | 0.800505 | 1.396912e-48 | -8.615850e-47 |
| Msa0034830 | Msa0716480 | 0.803940 | 2.742309e-49 | -8.615850e-47 |
| Msa0034830 | Msa0717900 | 0.822335 | 2.502417e-53 | -8.615850e-47 |
| Msa0034830 | Msa0740710 | 0.851954 | 6.336731e-61 | -8.615850e-47 |
| Msa0034830 | Msa0778600 | 0.824821 | 6.558814e-54 | -8.615850e-47 |
| Msa0034830 | Msa0780910 | 0.818065 | 2.380371e-52 | -8.615850e-47 |
| Msa0034830 | Msa0821160 | 0.809226 | 2.100513e-50 | -8.615850e-47 |
| Msa0034830 | Msa0837460 | 0.804288 | 2.321607e-49 | -8.615850e-47 |
| Msa0034830 | Msa0863620 | 0.804710 | 1.895565e-49 | -8.615850e-47 |
| Msa0034830 | Msa0900760 | 0.858068 | 1.061386e-62 | -8.615850e-47 |
| Msa0034830 | Msa0909760 | 0.850238 | 1.932666e-60 | -8.615850e-47 |
| Msa0034830 | Msa0931590 | 0.801256 | 9.810783e-49 | -8.615850e-47 |
| Msa0034830 | Msa0960770 | 0.802923 | 4.456460e-49 | -8.615850e-47 |
| Msa0034830 | Msa1008680 | 0.811367 | 7.253675e-51 | -8.615850e-47 |
| Msa0034830 | Msa1060900 | 0.806761 | 7.031349e-50 | -8.615850e-47 |
| Msa0034830 | Msa1078880 | 0.813732 | 2.205439e-51 | -8.615850e-47 |
| Msa0034830 | Msa1078970 | 0.815257 | 1.014303e-51 | -8.615850e-47 |
| Msa0034830 | Msa1084530 | 0.805493 | 1.300015e-49 | -8.615850e-47 |
| Msa0034830 | Msa1090140 | 0.801936 | 7.117157e-49 | -8.615850e-47 |
| Msa0034830 | Msa1116660 | 0.827976 | 1.161808e-54 | -8.615850e-47 |
| Msa0034830 | Msa1116740 | 0.828342 | 9.483672e-55 | -8.615850e-47 |
| Msa0034830 | Msa1124470 | 0.830655 | 2.598745e-55 | -8.615850e-47 |
| Msa0034830 | Msa1125820 | 0.805697 | 1.177904e-49 | -8.615850e-47 |
| Msa0034830 | Msa1125990 | 0.804678 | 1.925082e-49 | -8.615850e-47 |
| Msa0034830 | Msa1139050 | 0.809535 | 1.803377e-50 | -8.615850e-47 |
| Msa0034830 | Msa1162880 | 0.812955 | 3.267465e-51 | -8.615850e-47 |
| Msa0034830 | Msa1169190 | 0.817956 | 2.519283e-52 | -8.615850e-47 |
| Msa0034830 | Msa1188790 | 0.813854 | 2.073283e-51 | -8.615850e-47 |
| Msa0034830 | Msa1219770 | 0.820344 | 7.207487e-53 | -8.615850e-47 |
| Msa0034830 | Msa1244240 | 0.805048 | 1.610906e-49 | -8.615850e-47 |
| Msa0034830 | Msa1254540 | 0.824917 | 6.224884e-54 | -8.615850e-47 |
| Msa0034830 | Msa1263780 | 0.810978 | 8.807500e-51 | -8.615850e-47 |
| Msa0034830 | Msa1265450 | 0.804679 | 1.923917e-49 | -8.615850e-47 |
| Msa0034830 | Msa1338210 | 0.807769 | 4.298629e-50 | -8.615850e-47 |
| Msa0034830 | Msa1368750 | 0.808520 | 2.974383e-50 | -8.615850e-47 |
| Msa0034830 | Msa1374790 | 0.813438 | 2.559283e-51 | -8.615850e-47 |
| Msa0034830 | Msa1381470 | 0.815754 | 7.863280e-52 | -8.615850e-47 |
| Msa0034830 | Msa1383310 | 0.812638 | 3.833334e-51 | -8.615850e-47 |
| Msa0034830 | Msa1384150 | 0.807844 | 4.144713e-50 | -8.615850e-47 |
| Msa0034830 | Msa1387500 | 0.831122 | 1.995890e-55 | -8.615850e-47 |
| Msa0034830 | Msa1406720 | 0.805777 | 1.133422e-49 | -8.615850e-47 |
| Msa0034830 | Msa1409410 | 0.807110 | 5.930561e-50 | -8.615850e-47 |
| Msa0034830 | Msa1426320 | 0.806307 | 8.765123e-50 | -8.615850e-47 |
| Msa0034830 | Msa1434640 | 0.803929 | 2.757277e-49 | -8.615850e-47 |
| Msa0034830 | Msa1435100 | 0.800979 | 1.117602e-48 | -8.615850e-47 |
| Msa0034830 | Msa1439730 | 0.806536 | 7.844627e-50 | -8.615850e-47 |
| Msa0034830 | Msa1447170 | 0.811461 | 6.921200e-51 | -8.615850e-47 |
| Msa0034830 | Msa1450190 | 0.827261 | 1.724544e-54 | -8.615850e-47 |
| Msa0034830 | Msa1451820 | 0.812179 | 4.827847e-51 | -8.615850e-47 |
| Msa0034830 | Msa1454010 | 0.814196 | 1.742207e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0034830 | MtrunA17_Chr1g0197141 | 87.879 | 429 | 18 | 3 | 1 | 427 | 1 | 397 | 0.0 | 735 |
| Msa0034830 | MtrunA17_Chr4g0028171 | 39.175 | 97 | 56 | 1 | 329 | 425 | 206 | 299 | 3.56e-13 | 70.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 108 sgRNAs with CRISPR-Local
Find 189 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAATTGGATACTTCAAATTT+TGG | 0.152385 | 1_1:-62815800 | None:intergenic |
| TGACATATCATCACATAAAT+TGG | 0.184226 | 1_1:-62815816 | None:intergenic |
| CGTTGAATAGCTTCTTGTTT+AGG | 0.272929 | 1_1:+62816131 | Msa0034830:three_prime_UTR |
| TTCAGCTGGTTCTGGTTTCT+CGG | 0.284010 | 1_1:-62815756 | None:intergenic |
| CTGGTTTCTCGGGTCTGAAC+AGG | 0.293350 | 1_1:-62815745 | None:intergenic |
| CTCGCATCCTCTTGAAAGTT+TGG | 0.293934 | 1_1:+62815377 | Msa0034830:CDS |
| GGTGATTCTGTTTCTGTTGT+TGG | 0.311273 | 1_1:+62813933 | Msa0034830:CDS |
| AAGAAGTCTTCAGCTGGTTC+TGG | 0.317331 | 1_1:-62815764 | None:intergenic |
| GTGCTTTGGTTGGGCCTTGT+TGG | 0.319039 | 1_1:-62813988 | None:intergenic |
| CAACCTCCCGTCGCTGAAAC+TGG | 0.327729 | 1_1:+62813570 | Msa0034830:CDS |
| GTGCAGGGTGGTGCTTTGGT+TGG | 0.330722 | 1_1:-62813998 | None:intergenic |
| GAGAAAGAATCTACATCATT+AGG | 0.338286 | 1_1:+62815405 | Msa0034830:CDS |
| AAAACAAAGGAGAAGCAAAA+AGG | 0.343577 | 1_1:+62815005 | Msa0034830:CDS |
| TGCAGGGTGGTGCTTTGGTT+GGG | 0.346409 | 1_1:-62813997 | None:intergenic |
| AGGCTAATTACATTGAGATT+TGG | 0.379116 | 1_1:-62815038 | None:intergenic |
| GCGTTGAAAGCTGGAAAATC+AGG | 0.392933 | 1_1:+62815318 | Msa0034830:CDS |
| AGCTGCTCAGAAGAAAATTC+TGG | 0.404402 | 1_1:+62813956 | Msa0034830:CDS |
| TCCGGCCACATCGTGAACTT+TGG | 0.440039 | 1_1:-62815430 | None:intergenic |
| GGTGGAGGAAGTGGTAGTGC+AGG | 0.444862 | 1_1:-62814014 | None:intergenic |
| TCAGCTGGTTCTGGTTTCTC+GGG | 0.444940 | 1_1:-62815755 | None:intergenic |
| CATTCAATTTGTTGACATCC+AGG | 0.445959 | 1_1:+62814623 | Msa0034830:CDS |
| CTGTGAAGGTTGTTTCGTAC+AGG | 0.446552 | 1_1:+62815945 | Msa0034830:CDS |
| GGTAGTGCAGGGTGGTGCTT+TGG | 0.446807 | 1_1:-62814002 | None:intergenic |
| AAAGGAATGTTGAAAATAAG+AGG | 0.462622 | 1_1:+62815583 | Msa0034830:CDS |
| GAAATGATGAGGAAGCTCTT+AGG | 0.464073 | 1_1:+62814180 | Msa0034830:CDS |
| AAGAGGTTTAGAAGTAGGTT+CGG | 0.464751 | 1_1:+62813435 | None:intergenic |
| ACTTTGTAAAATAAAAGTTA+TGG | 0.467229 | 1_1:+62816261 | Msa0034830:three_prime_UTR |
| CAGCTGATCGACGCGAAGGC+CGG | 0.476480 | 1_1:-62815925 | None:intergenic |
| AAATCTGCAGCGTTGAAAGC+TGG | 0.478212 | 1_1:+62815309 | Msa0034830:CDS |
| ATCAAGTAGGACATATCATA+AGG | 0.482763 | 1_1:-62816074 | None:intergenic |
| AAGATCGGAGTCGAGGAAGA+TGG | 0.483738 | 1_1:-62813547 | None:intergenic |
| TAAACAAGTCAAATCAGAAA+AGG | 0.486455 | 1_1:+62815146 | Msa0034830:CDS |
| AGTGACAAAGAGGGAAGGGC+AGG | 0.488106 | 1_1:-62816241 | None:intergenic |
| TCAGTTGAAGGTGGAGGAAG+TGG | 0.491527 | 1_1:-62814023 | None:intergenic |
| CAAGCTGAAGTTCCCTCACC+TGG | 0.495269 | 1_1:-62814641 | None:intergenic |
| CAGAAAAGGTTGACAGTCAA+AGG | 0.498447 | 1_1:+62815160 | Msa0034830:CDS |
| ATTACATTCAGTATCTTGTC+CGG | 0.500303 | 1_1:-62815448 | None:intergenic |
| TATAATATACCTTGAGAATG+AGG | 0.502497 | 1_1:-62814058 | None:intergenic |
| TGCCTGTACACTTGATCCTC+AGG | 0.504464 | 1_1:+62815880 | Msa0034830:CDS |
| CCTTGTCCAGTTTCAGCGAC+GGG | 0.512611 | 1_1:-62813576 | None:intergenic |
| AGAACTTGTTCAGTGTTAGC+AGG | 0.515952 | 1_1:-62815555 | None:intergenic |
| TGTTGTGGCGATTCGAAACA+CGG | 0.517082 | 1_1:-62813511 | None:intergenic |
| GATTAGTGCAAGCAGACAAA+TGG | 0.517988 | 1_1:+62814530 | Msa0034830:CDS |
| TTGACTTGTTTAACAACAGC+TGG | 0.518722 | 1_1:-62815135 | None:intergenic |
| AGCAGGTGTCAATGCACCAT+TGG | 0.523635 | 1_1:-62814566 | None:intergenic |
| AGCTATGAAATTAACATCGA+TGG | 0.525803 | 1_1:+62814692 | Msa0034830:CDS |
| CAATTAATCTGAAAATGCGT+AGG | 0.528526 | 1_1:+62815975 | Msa0034830:CDS |
| GTAACACGAAGATCGTCTAT+TGG | 0.529512 | 1_1:+62815902 | Msa0034830:CDS |
| GTTTCGAATCGCCACAACAA+TGG | 0.531011 | 1_1:+62813515 | Msa0034830:exon |
| CTGAACAAGTTCTTGCTGAA+AGG | 0.532133 | 1_1:+62815565 | Msa0034830:CDS |
| TTCGCGTCGATCAGCTGTGA+AGG | 0.535513 | 1_1:+62815931 | Msa0034830:CDS |
| GTGGAGGAAGTGGTAGTGCA+GGG | 0.536378 | 1_1:-62814013 | None:intergenic |
| AAATAAGAAATGAAAGCAGC+AGG | 0.539192 | 1_1:-62814583 | None:intergenic |
| AGATCGGAGTCGAGGAAGAT+GGG | 0.546317 | 1_1:-62813546 | None:intergenic |
| GAGACATCAGTTGAAGGTGG+AGG | 0.547619 | 1_1:-62814029 | None:intergenic |
| TCCAAAGTTCACGATGTGGC+CGG | 0.550716 | 1_1:+62815429 | Msa0034830:CDS |
| CTCTGTTGACCTCATTCTCA+AGG | 0.552860 | 1_1:+62814049 | Msa0034830:CDS |
| TGGTTTCTCGGGTCTGAACA+GGG | 0.557557 | 1_1:-62815744 | None:intergenic |
| TCATTTGCCAAACTTTCAAG+AGG | 0.559353 | 1_1:-62815384 | None:intergenic |
| GTTTGCAATTACAAATAACC+TGG | 0.559829 | 1_1:-62816290 | None:intergenic |
| CACGAAGATCGTCTATTGGC+CGG | 0.560924 | 1_1:+62815906 | Msa0034830:CDS |
| AATTAATCTGAAAATGCGTA+GGG | 0.561635 | 1_1:+62815976 | Msa0034830:CDS |
| GGGAGCACCTTCCATTGTTG+TGG | 0.562709 | 1_1:-62813526 | None:intergenic |
| ATTTGTTGACATCCAGGTGA+GGG | 0.562858 | 1_1:+62814629 | Msa0034830:CDS |
| GTATCAAAGAAGTCTTCAGC+TGG | 0.569283 | 1_1:-62815770 | None:intergenic |
| TGTGAAGGTTGTTTCGTACA+GGG | 0.572533 | 1_1:+62815946 | Msa0034830:CDS |
| ATTACAGGCATAGTTTGAGA+AGG | 0.573967 | 1_1:+62815714 | Msa0034830:intron |
| TTCAGTGTTAGCAGGTCCTG+AGG | 0.575831 | 1_1:-62815547 | None:intergenic |
| ACAAAGTGACAAAGAGGGAA+GGG | 0.577542 | 1_1:-62816245 | None:intergenic |
| TCAACAGAGACATCAGTTGA+AGG | 0.578194 | 1_1:-62814035 | None:intergenic |
| TACCTGAGGATCAAGTGTAC+AGG | 0.580964 | 1_1:-62815882 | None:intergenic |
| CTCAGGAAAATGAAATGATG+AGG | 0.584643 | 1_1:+62814169 | Msa0034830:intron |
| CAAACAGGTGTTCTTCGAGA+AGG | 0.585970 | 1_1:+62815286 | Msa0034830:intron |
| CCATGGCATTGTTGCAGATG+AGG | 0.589331 | 1_1:+62814838 | Msa0034830:CDS |
| CTACTTGATGCCACAATGCA+TGG | 0.591197 | 1_1:+62816088 | Msa0034830:three_prime_UTR |
| GAGGAAGTGGTAGTGCAGGG+TGG | 0.592603 | 1_1:-62814010 | None:intergenic |
| TGCCACAATGCATGGTGGTA+GGG | 0.594437 | 1_1:+62816096 | Msa0034830:three_prime_UTR |
| TACAAAGTGACAAAGAGGGA+AGG | 0.594621 | 1_1:-62816246 | None:intergenic |
| CGAATCGCCACAACAATGGA+AGG | 0.596720 | 1_1:+62813519 | Msa0034830:exon |
| TGAAGACTTCTTTGATACAG+AGG | 0.602950 | 1_1:+62815775 | Msa0034830:CDS |
| GAAGTTTCGCTTGATGCTGT+AGG | 0.604493 | 1_1:-62815848 | None:intergenic |
| ACCTTGTCCAGTTTCAGCGA+CGG | 0.605270 | 1_1:-62813577 | None:intergenic |
| CCTCATCTGCAACAATGCCA+TGG | 0.605304 | 1_1:-62814838 | None:intergenic |
| ATGCCACAATGCATGGTGGT+AGG | 0.606076 | 1_1:+62816095 | Msa0034830:three_prime_UTR |
| AGCAGAGCAAAACTGATCCA+TGG | 0.606757 | 1_1:+62814821 | Msa0034830:CDS |
| CATGCATTGTGGCATCAAGT+AGG | 0.607542 | 1_1:-62816087 | None:intergenic |
| TTCACAGCTGATCGACGCGA+AGG | 0.610564 | 1_1:-62815929 | None:intergenic |
| AAAGTTTGAAGAAGAAAACA+AGG | 0.617125 | 1_1:+62814973 | Msa0034830:CDS |
| AAGGGAGAAGAACAAAACAA+AGG | 0.623499 | 1_1:+62814992 | Msa0034830:CDS |
| GAGGTTGAAGATCGGAGTCG+AGG | 0.623839 | 1_1:-62813554 | None:intergenic |
| TGCTAATACTCAAATGACGC+GGG | 0.629072 | 1_1:+62814398 | Msa0034830:CDS |
| AGCGACGGGAGGTTGAAGAT+CGG | 0.630621 | 1_1:-62813562 | None:intergenic |
| TGTCCAGTTTCAGCGACGGG+AGG | 0.630744 | 1_1:-62813573 | None:intergenic |
| CAAACTTTCAAGAGGATGCG+AGG | 0.631072 | 1_1:-62815376 | None:intergenic |
| ATCCCTACCACCATGCATTG+TGG | 0.632189 | 1_1:-62816098 | None:intergenic |
| AATTTGTTGACATCCAGGTG+AGG | 0.633886 | 1_1:+62814628 | Msa0034830:CDS |
| TAAAAGTTATGGTACTGACC+AGG | 0.640374 | 1_1:+62816272 | Msa0034830:three_prime_UTR |
| GTGGCGATTCGAAACACGGA+GGG | 0.644641 | 1_1:-62813507 | None:intergenic |
| GACGATCTTCGTGTTACCTG+AGG | 0.646396 | 1_1:-62815896 | None:intergenic |
| TGGTGAGTCTTGAAAACCAA+TGG | 0.649048 | 1_1:+62814550 | Msa0034830:CDS |
| ACAGAGACATCAGTTGAAGG+TGG | 0.656398 | 1_1:-62814032 | None:intergenic |
| TTGCTAATACTCAAATGACG+CGG | 0.657610 | 1_1:+62814397 | Msa0034830:CDS |
| CCCGTCGCTGAAACTGGACA+AGG | 0.671344 | 1_1:+62813576 | Msa0034830:CDS |
| AGGATCCAAAGTTCACGATG+TGG | 0.700483 | 1_1:+62815425 | Msa0034830:CDS |
| TCTGGCTGATATAACCAACA+AGG | 0.712159 | 1_1:+62813974 | Msa0034830:CDS |
| AAGTTTGAAGAAGAAAACAA+GGG | 0.730503 | 1_1:+62814974 | Msa0034830:CDS |
| CTTGATGCCACAATGCATGG+TGG | 0.759923 | 1_1:+62816091 | Msa0034830:three_prime_UTR |
| TGTGGCGATTCGAAACACGG+AGG | 0.775043 | 1_1:-62813508 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATATATATATTTTCCTTTAT+TGG | + | chr1_1:62814868-62814887 | Msa0034830:intron | 10.0% |
| !!! | TTGATATTCAAATCTAAAAT+TGG | + | chr1_1:62814482-62814501 | Msa0034830:intron | 15.0% |
| !! | ACTTTGTAAAATAAAAGTTA+TGG | + | chr1_1:62816261-62816280 | Msa0034830:three_prime_UTR | 15.0% |
| !!! | ATAGATAAACCTTTCAATTT+TGG | - | chr1_1:62813809-62813828 | None:intergenic | 20.0% |
| !! | ATATATATATGCAGACATTT+AGG | + | chr1_1:62813827-62813846 | Msa0034830:intron | 20.0% |
| !! | TTCGTATAGTAATTGAAAAA+TGG | + | chr1_1:62813861-62813880 | Msa0034830:intron | 20.0% |
| !! | TCGTATAGTAATTGAAAAAT+GGG | + | chr1_1:62813862-62813881 | Msa0034830:intron | 20.0% |
| !!! | TTCAAAATTTTACCTCTTTT+TGG | - | chr1_1:62813912-62813931 | None:intergenic | 20.0% |
| !!! | AAAAAGAGGTAAAATTTTGA+AGG | + | chr1_1:62813911-62813930 | Msa0034830:CDS | 20.0% |
| !!! | AAAAGAGGTAAAATTTTGAA+GGG | + | chr1_1:62813912-62813931 | Msa0034830:CDS | 20.0% |
| !!! | ATTTTTTGAATTTGTTTCTC+AGG | + | chr1_1:62814152-62814171 | Msa0034830:intron | 20.0% |
| !!! | TACATTGATTGAAGATAAAA+AGG | - | chr1_1:62814252-62814271 | None:intergenic | 20.0% |
| !!! | TTTTTATCTTCAATCAATGT+AGG | + | chr1_1:62814251-62814270 | Msa0034830:intron | 20.0% |
| !!! | AAAGCAATTTTCAGAAATTT+CGG | + | chr1_1:62814352-62814371 | Msa0034830:CDS | 20.0% |
| !!! | AAATTGGATACTTCAAATTT+TGG | - | chr1_1:62815803-62815822 | None:intergenic | 20.0% |
| !!! | AATTTTGTTTGTGCTACTAA+CGG | - | chr1_1:62813468-62813487 | None:intergenic | 25.0% |
| ! | TATAATATACCTTGAGAATG+AGG | - | chr1_1:62814061-62814080 | None:intergenic | 25.0% |
| !!! | GGAATAGTTTTTGTTTACTT+TGG | + | chr1_1:62814272-62814291 | Msa0034830:intron | 25.0% |
| ! | AAAGTTTGAAGAAGAAAACA+AGG | + | chr1_1:62814973-62814992 | Msa0034830:CDS | 25.0% |
| ! | AAGTTTGAAGAAGAAAACAA+GGG | + | chr1_1:62814974-62814993 | Msa0034830:CDS | 25.0% |
| !! | TTAAATTTTGTAGACAGAGT+GGG | - | chr1_1:62815070-62815089 | None:intergenic | 25.0% |
| !! | ATTAAATTTTGTAGACAGAG+TGG | - | chr1_1:62815071-62815090 | None:intergenic | 25.0% |
| ! | TAAACAAGTCAAATCAGAAA+AGG | + | chr1_1:62815146-62815165 | Msa0034830:CDS | 25.0% |
| !!! | TTAATGTCGAATTCTAAAGT+TGG | + | chr1_1:62815213-62815232 | Msa0034830:intron | 25.0% |
| ! | CAAGCAAAAAATTATGTTGA+AGG | - | chr1_1:62815524-62815543 | None:intergenic | 25.0% |
| ! | AAAGGAATGTTGAAAATAAG+AGG | + | chr1_1:62815583-62815602 | Msa0034830:CDS | 25.0% |
| ! | TGACATATCATCACATAAAT+TGG | - | chr1_1:62815819-62815838 | None:intergenic | 25.0% |
| ! | AATTAATCTGAAAATGCGTA+GGG | + | chr1_1:62815976-62815995 | Msa0034830:CDS | 25.0% |
| !!! | AAGTGAGTCAGTTTTATATA+AGG | + | chr1_1:62816001-62816020 | Msa0034830:exon | 25.0% |
| !! | ATTTTACAAAGTGACAAAGA+GGG | - | chr1_1:62816253-62816272 | None:intergenic | 25.0% |
| !! | TATTTTACAAAGTGACAAAG+AGG | - | chr1_1:62816254-62816273 | None:intergenic | 25.0% |
| AGTGAAATTCAGAATTGAAC+AGG | - | chr1_1:62813708-62813727 | None:intergenic | 30.0% | |
| !!! | TGCAGACATTTAGGTTTTTT+AGG | + | chr1_1:62813836-62813855 | Msa0034830:intron | 30.0% |
| !!! | GCAGACATTTAGGTTTTTTA+GGG | + | chr1_1:62813837-62813856 | Msa0034830:intron | 30.0% |
| ATGATTATCACTACACTTCA+TGG | + | chr1_1:62814129-62814148 | Msa0034830:intron | 30.0% | |
| ! | GATCTTTTTATGTGCAATGT+AGG | + | chr1_1:62814506-62814525 | Msa0034830:intron | 30.0% |
| AAATAAGAAATGAAAGCAGC+AGG | - | chr1_1:62814586-62814605 | None:intergenic | 30.0% | |
| AGCTATGAAATTAACATCGA+TGG | + | chr1_1:62814692-62814711 | Msa0034830:CDS | 30.0% | |
| CATTTACAAATTCATCAGGT+TGG | - | chr1_1:62814734-62814753 | None:intergenic | 30.0% | |
| TGCTCATTTACAAATTCATC+AGG | - | chr1_1:62814738-62814757 | None:intergenic | 30.0% | |
| AACCATCAAAAACTAAAGCA+GGG | - | chr1_1:62814771-62814790 | None:intergenic | 30.0% | |
| AAACCATCAAAAACTAAAGC+AGG | - | chr1_1:62814772-62814791 | None:intergenic | 30.0% | |
| AAAACAAAGGAGAAGCAAAA+AGG | + | chr1_1:62815005-62815024 | Msa0034830:CDS | 30.0% | |
| AGGCTAATTACATTGAGATT+TGG | - | chr1_1:62815041-62815060 | None:intergenic | 30.0% | |
| CGACATTAATCATGTGTAAA+AGG | - | chr1_1:62815202-62815221 | None:intergenic | 30.0% | |
| GAGAAAGAATCTACATCATT+AGG | + | chr1_1:62815405-62815424 | Msa0034830:CDS | 30.0% | |
| ATTACATTCAGTATCTTGTC+CGG | - | chr1_1:62815451-62815470 | None:intergenic | 30.0% | |
| AGGAGAGAAACAAAAGAAAA+AGG | - | chr1_1:62815504-62815523 | None:intergenic | 30.0% | |
| TATGAATTCCACTTTCTGAA+TGG | + | chr1_1:62815618-62815637 | Msa0034830:intron | 30.0% | |
| TGGATTCGAATGAATGAAAT+AGG | + | chr1_1:62815638-62815657 | Msa0034830:intron | 30.0% | |
| TGTCTTCACGAAAAAATTAC+AGG | + | chr1_1:62815699-62815718 | Msa0034830:intron | 30.0% | |
| ! | CTACGCATTTTCAGATTAAT+TGG | - | chr1_1:62815977-62815996 | None:intergenic | 30.0% |
| CAATTAATCTGAAAATGCGT+AGG | + | chr1_1:62815975-62815994 | Msa0034830:CDS | 30.0% | |
| ATCAAGTAGGACATATCATA+AGG | - | chr1_1:62816077-62816096 | None:intergenic | 30.0% | |
| GTTTGCAATTACAAATAACC+TGG | - | chr1_1:62816293-62816312 | None:intergenic | 30.0% | |
| GAAATGAAAGAGAAGAAGAG+TGG | - | chr1_1:62813615-62813634 | None:intergenic | 35.0% | |
| ACTGAGACTCCAAAATTGAA+AGG | + | chr1_1:62813797-62813816 | Msa0034830:intron | 35.0% | |
| !!! | TTTTTGGTTTTTGACCTGCA+AGG | - | chr1_1:62813896-62813915 | None:intergenic | 35.0% |
| CTCAGGAAAATGAAATGATG+AGG | + | chr1_1:62814169-62814188 | Msa0034830:intron | 35.0% | |
| ! | GGTTTGTTCTGTTTATAGTG+TGG | + | chr1_1:62814293-62814312 | Msa0034830:intron | 35.0% |
| TTGCTAATACTCAAATGACG+CGG | + | chr1_1:62814397-62814416 | Msa0034830:CDS | 35.0% | |
| !! | CATTCAATTTGTTGACATCC+AGG | + | chr1_1:62814623-62814642 | Msa0034830:CDS | 35.0% |
| CTTGAACTAGCATGCAAAAA+TGG | + | chr1_1:62814660-62814679 | Msa0034830:CDS | 35.0% | |
| !! | GGTTTTGTCTTTTGATTCGT+AGG | + | chr1_1:62814787-62814806 | Msa0034830:intron | 35.0% |
| TTGATTAAGTGAAAGTGAGC+TGG | - | chr1_1:62814920-62814939 | None:intergenic | 35.0% | |
| ! | TGACTGCTTACTCTAAGAAA+AGG | - | chr1_1:62814948-62814967 | None:intergenic | 35.0% |
| AAGGGAGAAGAACAAAACAA+AGG | + | chr1_1:62814992-62815011 | Msa0034830:CDS | 35.0% | |
| !! | TTGACTTGTTTAACAACAGC+TGG | - | chr1_1:62815138-62815157 | None:intergenic | 35.0% |
| !! | GAATTCTAAAGTTGGACACT+GGG | + | chr1_1:62815221-62815240 | Msa0034830:intron | 35.0% |
| TCTCCTTCAAATATGCAAAC+AGG | + | chr1_1:62815271-62815290 | Msa0034830:intron | 35.0% | |
| ACACCTGTTTGCATATTTGA+AGG | - | chr1_1:62815277-62815296 | None:intergenic | 35.0% | |
| TCATTTGCCAAACTTTCAAG+AGG | - | chr1_1:62815387-62815406 | None:intergenic | 35.0% | |
| ATTCGAATCCATTCAGAAAG+TGG | - | chr1_1:62815629-62815648 | None:intergenic | 35.0% | |
| ! | TTTTCGTGAAGACATGAAAC+AGG | - | chr1_1:62815693-62815712 | None:intergenic | 35.0% |
| ATTACAGGCATAGTTTGAGA+AGG | + | chr1_1:62815714-62815733 | Msa0034830:intron | 35.0% | |
| TGAAGACTTCTTTGATACAG+AGG | + | chr1_1:62815775-62815794 | Msa0034830:CDS | 35.0% | |
| ! | CGTTGAATAGCTTCTTGTTT+AGG | + | chr1_1:62816131-62816150 | Msa0034830:three_prime_UTR | 35.0% |
| !! | TAAAAGTTATGGTACTGACC+AGG | + | chr1_1:62816272-62816291 | Msa0034830:three_prime_UTR | 35.0% |
| GGTTATGGGAATGAAGGATT+GGG | - | chr1_1:62813637-62813656 | None:intergenic | 40.0% | |
| GAACAGGAAAACCCTAATCT+CGG | - | chr1_1:62813692-62813711 | None:intergenic | 40.0% | |
| ! | AATGGGTTTCATTTCCTTGC+AGG | + | chr1_1:62813879-62813898 | Msa0034830:intron | 40.0% |
| GCAGGTCAAAAACCAAAAAG+AGG | + | chr1_1:62813897-62813916 | Msa0034830:intron | 40.0% | |
| !! | GGTGATTCTGTTTCTGTTGT+TGG | + | chr1_1:62813933-62813952 | Msa0034830:CDS | 40.0% |
| AGCTGCTCAGAAGAAAATTC+TGG | + | chr1_1:62813956-62813975 | Msa0034830:CDS | 40.0% | |
| TCTGGCTGATATAACCAACA+AGG | + | chr1_1:62813974-62813993 | Msa0034830:CDS | 40.0% | |
| TCAACAGAGACATCAGTTGA+AGG | - | chr1_1:62814038-62814057 | None:intergenic | 40.0% | |
| GAAATGATGAGGAAGCTCTT+AGG | + | chr1_1:62814180-62814199 | Msa0034830:CDS | 40.0% | |
| TGCTAATACTCAAATGACGC+GGG | + | chr1_1:62814398-62814417 | Msa0034830:CDS | 40.0% | |
| GATTAGTGCAAGCAGACAAA+TGG | + | chr1_1:62814530-62814549 | Msa0034830:CDS | 40.0% | |
| TGGTGAGTCTTGAAAACCAA+TGG | + | chr1_1:62814550-62814569 | Msa0034830:CDS | 40.0% | |
| !! | AATTTGTTGACATCCAGGTG+AGG | + | chr1_1:62814628-62814647 | Msa0034830:CDS | 40.0% |
| ! | ATTTGTTGACATCCAGGTGA+GGG | + | chr1_1:62814629-62814648 | Msa0034830:CDS | 40.0% |
| !!! | AGCCCTGCTTTAGTTTTTGA+TGG | + | chr1_1:62814766-62814785 | Msa0034830:intron | 40.0% |
| CAAGCAGAAGAAGCCAATAA+AGG | - | chr1_1:62814884-62814903 | None:intergenic | 40.0% | |
| !! | TATTGGCTTCTTCTGCTTGT+TGG | + | chr1_1:62814885-62814904 | Msa0034830:intron | 40.0% |
| AAGGAGAAGCAAAAAGGAAG+AGG | + | chr1_1:62815011-62815030 | Msa0034830:CDS | 40.0% | |
| !! | TTTTGTAGACAGAGTGGGTT+CGG | - | chr1_1:62815065-62815084 | None:intergenic | 40.0% |
| CAGAAAAGGTTGACAGTCAA+AGG | + | chr1_1:62815160-62815179 | Msa0034830:CDS | 40.0% | |
| !! | CGAATTCTAAAGTTGGACAC+TGG | + | chr1_1:62815220-62815239 | Msa0034830:intron | 40.0% |
| !!! | AATTTTTTGCTTGCAGCCTC+AGG | + | chr1_1:62815531-62815550 | Msa0034830:intron | 40.0% |
| ! | AGAACTTGTTCAGTGTTAGC+AGG | - | chr1_1:62815558-62815577 | None:intergenic | 40.0% |
| CTGAACAAGTTCTTGCTGAA+AGG | + | chr1_1:62815565-62815584 | Msa0034830:CDS | 40.0% | |
| GTATCAAAGAAGTCTTCAGC+TGG | - | chr1_1:62815773-62815792 | None:intergenic | 40.0% | |
| GTAACACGAAGATCGTCTAT+TGG | + | chr1_1:62815902-62815921 | Msa0034830:CDS | 40.0% | |
| ! | TGTGAAGGTTGTTTCGTACA+GGG | + | chr1_1:62815946-62815965 | Msa0034830:CDS | 40.0% |
| ACAAAGTGACAAAGAGGGAA+GGG | - | chr1_1:62816248-62816267 | None:intergenic | 40.0% | |
| TACAAAGTGACAAAGAGGGA+AGG | - | chr1_1:62816249-62816268 | None:intergenic | 40.0% | |
| TGTTGTGGCGATTCGAAACA+CGG | - | chr1_1:62813514-62813533 | None:intergenic | 45.0% | |
| GTTTCGAATCGCCACAACAA+TGG | + | chr1_1:62813515-62813534 | Msa0034830:exon | 45.0% | |
| GGGTTATGGGAATGAAGGAT+TGG | - | chr1_1:62813638-62813657 | None:intergenic | 45.0% | |
| TTCATTCCCATAACCCCCTA+GGG | + | chr1_1:62813642-62813661 | Msa0034830:intron | 45.0% | |
| AGTAAACCCTAGGGGGTTAT+GGG | - | chr1_1:62813651-62813670 | None:intergenic | 45.0% | |
| AGAGGGATGAGTAAACCCTA+GGG | - | chr1_1:62813660-62813679 | None:intergenic | 45.0% | |
| AAGAGGGATGAGTAAACCCT+AGG | - | chr1_1:62813661-62813680 | None:intergenic | 45.0% | |
| AAACCCTAATCTCGGAGTGA+GGG | - | chr1_1:62813684-62813703 | None:intergenic | 45.0% | |
| AAAACCCTAATCTCGGAGTG+AGG | - | chr1_1:62813685-62813704 | None:intergenic | 45.0% | |
| ACAGAGACATCAGTTGAAGG+TGG | - | chr1_1:62814035-62814054 | None:intergenic | 45.0% | |
| CTCTGTTGACCTCATTCTCA+AGG | + | chr1_1:62814049-62814068 | Msa0034830:CDS | 45.0% | |
| AGCAGAGCAAAACTGATCCA+TGG | + | chr1_1:62814821-62814840 | Msa0034830:CDS | 45.0% | |
| ! | GACAGTCAAAGGTATGAGCT+TGG | + | chr1_1:62815171-62815190 | Msa0034830:intron | 45.0% |
| AGTTGGACACTGGGATACTT+AGG | + | chr1_1:62815230-62815249 | Msa0034830:intron | 45.0% | |
| CACTGGGATACTTAGGAACA+AGG | + | chr1_1:62815237-62815256 | Msa0034830:intron | 45.0% | |
| CAAACAGGTGTTCTTCGAGA+AGG | + | chr1_1:62815286-62815305 | Msa0034830:intron | 45.0% | |
| ! | AAATCTGCAGCGTTGAAAGC+TGG | + | chr1_1:62815309-62815328 | Msa0034830:CDS | 45.0% |
| GCGTTGAAAGCTGGAAAATC+AGG | + | chr1_1:62815318-62815337 | Msa0034830:CDS | 45.0% | |
| CAAACTTTCAAGAGGATGCG+AGG | - | chr1_1:62815379-62815398 | None:intergenic | 45.0% | |
| CTCGCATCCTCTTGAAAGTT+TGG | + | chr1_1:62815377-62815396 | Msa0034830:CDS | 45.0% | |
| AGGATCCAAAGTTCACGATG+TGG | + | chr1_1:62815425-62815444 | Msa0034830:CDS | 45.0% | |
| !! | TTCAGCTGGTTCTGGTTTCT+CGG | - | chr1_1:62815759-62815778 | None:intergenic | 45.0% |
| ! | AAGAAGTCTTCAGCTGGTTC+TGG | - | chr1_1:62815767-62815786 | None:intergenic | 45.0% |
| GAAGTTTCGCTTGATGCTGT+AGG | - | chr1_1:62815851-62815870 | None:intergenic | 45.0% | |
| TACCTGAGGATCAAGTGTAC+AGG | - | chr1_1:62815885-62815904 | None:intergenic | 45.0% | |
| ! | CTGTGAAGGTTGTTTCGTAC+AGG | + | chr1_1:62815945-62815964 | Msa0034830:CDS | 45.0% |
| CATGCATTGTGGCATCAAGT+AGG | - | chr1_1:62816090-62816109 | None:intergenic | 45.0% | |
| CTACTTGATGCCACAATGCA+TGG | + | chr1_1:62816088-62816107 | Msa0034830:three_prime_UTR | 45.0% | |
| !! | AAAAAAAAAAAAAAGATAAA+TGG | - | chr1_1:62815480-62815499 | None:intergenic | 5.0% |
| CGAATCGCCACAACAATGGA+AGG | + | chr1_1:62813519-62813538 | Msa0034830:exon | 50.0% | |
| AGATCGGAGTCGAGGAAGAT+GGG | - | chr1_1:62813549-62813568 | None:intergenic | 50.0% | |
| AAGATCGGAGTCGAGGAAGA+TGG | - | chr1_1:62813550-62813569 | None:intergenic | 50.0% | |
| ACCTTGTCCAGTTTCAGCGA+CGG | - | chr1_1:62813580-62813599 | None:intergenic | 50.0% | |
| CTAGGGGGTTATGGGAATGA+AGG | - | chr1_1:62813643-62813662 | None:intergenic | 50.0% | |
| CTTCATTCCCATAACCCCCT+AGG | + | chr1_1:62813641-62813660 | Msa0034830:intron | 50.0% | |
| GAGTAAACCCTAGGGGGTTA+TGG | - | chr1_1:62813652-62813671 | None:intergenic | 50.0% | |
| AGGGATGAGTAAACCCTAGG+GGG | - | chr1_1:62813658-62813677 | None:intergenic | 50.0% | |
| GAGGGATGAGTAAACCCTAG+GGG | - | chr1_1:62813659-62813678 | None:intergenic | 50.0% | |
| AATCTCGGAGTGAGGGAAGA+GGG | - | chr1_1:62813677-62813696 | None:intergenic | 50.0% | |
| TAATCTCGGAGTGAGGGAAG+AGG | - | chr1_1:62813678-62813697 | None:intergenic | 50.0% | |
| TCTTCCCTCACTCCGAGATT+AGG | + | chr1_1:62813677-62813696 | Msa0034830:intron | 50.0% | |
| CTTCCCTCACTCCGAGATTA+GGG | + | chr1_1:62813678-62813697 | Msa0034830:intron | 50.0% | |
| TCAGTTGAAGGTGGAGGAAG+TGG | - | chr1_1:62814026-62814045 | None:intergenic | 50.0% | |
| GAGACATCAGTTGAAGGTGG+AGG | - | chr1_1:62814032-62814051 | None:intergenic | 50.0% | |
| AGCAGGTGTCAATGCACCAT+TGG | - | chr1_1:62814569-62814588 | None:intergenic | 50.0% | |
| CCTCATCTGCAACAATGCCA+TGG | - | chr1_1:62814841-62814860 | None:intergenic | 50.0% | |
| CCATGGCATTGTTGCAGATG+AGG | + | chr1_1:62814838-62814857 | Msa0034830:CDS | 50.0% | |
| TCCAAAGTTCACGATGTGGC+CGG | + | chr1_1:62815429-62815448 | Msa0034830:CDS | 50.0% | |
| TTCAGTGTTAGCAGGTCCTG+AGG | - | chr1_1:62815550-62815569 | None:intergenic | 50.0% | |
| TGGTTTCTCGGGTCTGAACA+GGG | - | chr1_1:62815747-62815766 | None:intergenic | 50.0% | |
| !! | TCAGCTGGTTCTGGTTTCTC+GGG | - | chr1_1:62815758-62815777 | None:intergenic | 50.0% |
| TGCCTGTACACTTGATCCTC+AGG | + | chr1_1:62815880-62815899 | Msa0034830:CDS | 50.0% | |
| GACGATCTTCGTGTTACCTG+AGG | - | chr1_1:62815899-62815918 | None:intergenic | 50.0% | |
| CACGAAGATCGTCTATTGGC+CGG | + | chr1_1:62815906-62815925 | Msa0034830:CDS | 50.0% | |
| CTTGATGCCACAATGCATGG+TGG | + | chr1_1:62816091-62816110 | Msa0034830:three_prime_UTR | 50.0% | |
| ATGCCACAATGCATGGTGGT+AGG | + | chr1_1:62816095-62816114 | Msa0034830:three_prime_UTR | 50.0% | |
| TGCCACAATGCATGGTGGTA+GGG | + | chr1_1:62816096-62816115 | Msa0034830:three_prime_UTR | 50.0% | |
| ATCCCTACCACCATGCATTG+TGG | - | chr1_1:62816101-62816120 | None:intergenic | 50.0% | |
| GTGGCGATTCGAAACACGGA+GGG | - | chr1_1:62813510-62813529 | None:intergenic | 55.0% | |
| TGTGGCGATTCGAAACACGG+AGG | - | chr1_1:62813511-62813530 | None:intergenic | 55.0% | |
| !! | GGGAGCACCTTCCATTGTTG+TGG | - | chr1_1:62813529-62813548 | None:intergenic | 55.0% |
| GAGGTTGAAGATCGGAGTCG+AGG | - | chr1_1:62813557-62813576 | None:intergenic | 55.0% | |
| AGCGACGGGAGGTTGAAGAT+CGG | - | chr1_1:62813565-62813584 | None:intergenic | 55.0% | |
| CCTTGTCCAGTTTCAGCGAC+GGG | - | chr1_1:62813579-62813598 | None:intergenic | 55.0% | |
| ! | GTGCTTTGGTTGGGCCTTGT+TGG | - | chr1_1:62813991-62814010 | None:intergenic | 55.0% |
| TGCAGGGTGGTGCTTTGGTT+GGG | - | chr1_1:62814000-62814019 | None:intergenic | 55.0% | |
| ! | GTGGAGGAAGTGGTAGTGCA+GGG | - | chr1_1:62814016-62814035 | None:intergenic | 55.0% |
| CAAGCTGAAGTTCCCTCACC+TGG | - | chr1_1:62814644-62814663 | None:intergenic | 55.0% | |
| TCCGGCCACATCGTGAACTT+TGG | - | chr1_1:62815433-62815452 | None:intergenic | 55.0% | |
| CTGGTTTCTCGGGTCTGAAC+AGG | - | chr1_1:62815748-62815767 | None:intergenic | 55.0% | |
| TTCACAGCTGATCGACGCGA+AGG | - | chr1_1:62815932-62815951 | None:intergenic | 55.0% | |
| ! | TTCGCGTCGATCAGCTGTGA+AGG | + | chr1_1:62815931-62815950 | Msa0034830:CDS | 55.0% |
| AGTGACAAAGAGGGAAGGGC+AGG | - | chr1_1:62816244-62816263 | None:intergenic | 55.0% | |
| CAACCTCCCGTCGCTGAAAC+TGG | + | chr1_1:62813570-62813589 | Msa0034830:CDS | 60.0% | |
| TGTCCAGTTTCAGCGACGGG+AGG | - | chr1_1:62813576-62813595 | None:intergenic | 60.0% | |
| CCCGTCGCTGAAACTGGACA+AGG | + | chr1_1:62813576-62813595 | Msa0034830:CDS | 60.0% | |
| GTGCAGGGTGGTGCTTTGGT+TGG | - | chr1_1:62814001-62814020 | None:intergenic | 60.0% | |
| GGTAGTGCAGGGTGGTGCTT+TGG | - | chr1_1:62814005-62814024 | None:intergenic | 60.0% | |
| ! | GAGGAAGTGGTAGTGCAGGG+TGG | - | chr1_1:62814013-62814032 | None:intergenic | 60.0% |
| ! | GGTGGAGGAAGTGGTAGTGC+AGG | - | chr1_1:62814017-62814036 | None:intergenic | 60.0% |
| ! | GTAGACAGAGTGGGTTCGGC+AGG | - | chr1_1:62815061-62815080 | None:intergenic | 60.0% |
| CAGCTGATCGACGCGAAGGC+CGG | - | chr1_1:62815928-62815947 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 62813441 | 62816338 | 62813441 | ID=Msa0034830;Name=Msa0034830 |
| chr1_1 | mRNA | 62813441 | 62816338 | 62813441 | ID=Msa0034830-mRNA-1;Parent=Msa0034830;Name=Msa0034830-mRNA-1;_AED=0.15;_eAED=0.15;_QI=93|1|0.90|1|1|1|11|332|427 |
| chr1_1 | exon | 62813441 | 62813597 | 62813441 | ID=Msa0034830-mRNA-1:exon:19916;Parent=Msa0034830-mRNA-1 |
| chr1_1 | exon | 62813901 | 62814070 | 62813901 | ID=Msa0034830-mRNA-1:exon:19917;Parent=Msa0034830-mRNA-1 |
| chr1_1 | exon | 62814174 | 62814211 | 62814174 | ID=Msa0034830-mRNA-1:exon:19918;Parent=Msa0034830-mRNA-1 |
| chr1_1 | exon | 62814311 | 62814419 | 62814311 | ID=Msa0034830-mRNA-1:exon:19919;Parent=Msa0034830-mRNA-1 |
| chr1_1 | exon | 62814528 | 62814713 | 62814528 | ID=Msa0034830-mRNA-1:exon:19920;Parent=Msa0034830-mRNA-1 |
| chr1_1 | exon | 62814809 | 62814859 | 62814809 | ID=Msa0034830-mRNA-1:exon:19921;Parent=Msa0034830-mRNA-1 |
| chr1_1 | exon | 62814956 | 62815049 | 62814956 | ID=Msa0034830-mRNA-1:exon:19922;Parent=Msa0034830-mRNA-1 |
| chr1_1 | exon | 62815127 | 62815181 | 62815127 | ID=Msa0034830-mRNA-1:exon:19923;Parent=Msa0034830-mRNA-1 |
| chr1_1 | exon | 62815293 | 62815465 | 62815293 | ID=Msa0034830-mRNA-1:exon:19924;Parent=Msa0034830-mRNA-1 |
| chr1_1 | exon | 62815547 | 62815604 | 62815547 | ID=Msa0034830-mRNA-1:exon:19925;Parent=Msa0034830-mRNA-1 |
| chr1_1 | exon | 62815721 | 62816338 | 62815721 | ID=Msa0034830-mRNA-1:exon:19926;Parent=Msa0034830-mRNA-1 |
| chr1_1 | five_prime_UTR | 62813441 | 62813533 | 62813441 | ID=Msa0034830-mRNA-1:five_prime_utr;Parent=Msa0034830-mRNA-1 |
| chr1_1 | CDS | 62813534 | 62813597 | 62813534 | ID=Msa0034830-mRNA-1:cds;Parent=Msa0034830-mRNA-1 |
| chr1_1 | CDS | 62813901 | 62814070 | 62813901 | ID=Msa0034830-mRNA-1:cds;Parent=Msa0034830-mRNA-1 |
| chr1_1 | CDS | 62814174 | 62814211 | 62814174 | ID=Msa0034830-mRNA-1:cds;Parent=Msa0034830-mRNA-1 |
| chr1_1 | CDS | 62814311 | 62814419 | 62814311 | ID=Msa0034830-mRNA-1:cds;Parent=Msa0034830-mRNA-1 |
| chr1_1 | CDS | 62814528 | 62814713 | 62814528 | ID=Msa0034830-mRNA-1:cds;Parent=Msa0034830-mRNA-1 |
| chr1_1 | CDS | 62814809 | 62814859 | 62814809 | ID=Msa0034830-mRNA-1:cds;Parent=Msa0034830-mRNA-1 |
| chr1_1 | CDS | 62814956 | 62815049 | 62814956 | ID=Msa0034830-mRNA-1:cds;Parent=Msa0034830-mRNA-1 |
| chr1_1 | CDS | 62815127 | 62815181 | 62815127 | ID=Msa0034830-mRNA-1:cds;Parent=Msa0034830-mRNA-1 |
| chr1_1 | CDS | 62815293 | 62815465 | 62815293 | ID=Msa0034830-mRNA-1:cds;Parent=Msa0034830-mRNA-1 |
| chr1_1 | CDS | 62815547 | 62815604 | 62815547 | ID=Msa0034830-mRNA-1:cds;Parent=Msa0034830-mRNA-1 |
| chr1_1 | CDS | 62815721 | 62816006 | 62815721 | ID=Msa0034830-mRNA-1:cds;Parent=Msa0034830-mRNA-1 |
| chr1_1 | three_prime_UTR | 62816007 | 62816338 | 62816007 | ID=Msa0034830-mRNA-1:three_prime_utr;Parent=Msa0034830-mRNA-1 |
| Gene Sequence |
| Protein sequence |
