Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0317870 | XP_013463044.1 | 97.009 | 468 | 14 | 0 | 1 | 468 | 1 | 468 | 0.0 | 910 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0317870 | sp|Q94C59|PATL4_ARATH | 66.851 | 362 | 107 | 4 | 108 | 463 | 180 | 534 | 4.11e-176 | 507 |
| Msa0317870 | sp|Q94C59|PATL4_ARATH | 45.283 | 106 | 51 | 2 | 1 | 100 | 1 | 105 | 3.54e-11 | 68.9 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0204950 | Msa0317870 | 0.810814 | 9.558478e-51 | -8.615850e-47 |
| Msa0241610 | Msa0317870 | 0.849377 | 3.362684e-60 | -8.615850e-47 |
| Msa0249850 | Msa0317870 | 0.808769 | 2.632366e-50 | -8.615850e-47 |
| Msa0317870 | Msa0320600 | 0.810401 | 1.174026e-50 | -8.615850e-47 |
| Msa0317870 | Msa0754450 | 0.814750 | 1.314398e-51 | -8.615850e-47 |
| Msa0317870 | Msa1031180 | 0.818273 | 2.136785e-52 | -8.615850e-47 |
| Msa0317870 | Msa1119430 | 0.813910 | 2.014685e-51 | -8.615850e-47 |
| Msa0317870 | Msa1158200 | 0.836184 | 1.086061e-56 | -8.615850e-47 |
| Msa0317870 | Msa1190160 | 0.812177 | 4.833625e-51 | -8.615850e-47 |
| Msa0317870 | Msa1207840 | 0.805521 | 1.282461e-49 | -8.615850e-47 |
| Msa0317870 | Msa1257720 | 0.810889 | 9.210949e-51 | -8.615850e-47 |
| Msa0317870 | Msa1450520 | 0.810349 | 1.204546e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0317870 | MtrunA17_Chr2g0293201 | 97.009 | 468 | 14 | 0 | 1 | 468 | 1 | 468 | 0.0 | 910 |
| Msa0317870 | MtrunA17_Chr8g0385291 | 50.254 | 394 | 181 | 6 | 81 | 467 | 116 | 501 | 4.28e-133 | 394 |
| Msa0317870 | MtrunA17_Chr3g0131071 | 52.022 | 371 | 165 | 8 | 88 | 452 | 193 | 556 | 6.60e-129 | 385 |
| Msa0317870 | MtrunA17_Chr1g0183881 | 44.691 | 405 | 197 | 5 | 64 | 468 | 91 | 468 | 4.08e-126 | 375 |
| Msa0317870 | MtrunA17_Chr4g0014901 | 49.608 | 383 | 181 | 7 | 88 | 463 | 213 | 590 | 5.31e-125 | 376 |
| Msa0317870 | MtrunA17_Chr4g0014911 | 43.404 | 470 | 208 | 8 | 6 | 462 | 35 | 459 | 3.35e-119 | 357 |
| Msa0317870 | MtrunA17_Chr4g0004981 | 49.415 | 342 | 163 | 5 | 124 | 461 | 107 | 442 | 3.20e-118 | 353 |
| Msa0317870 | MtrunA17_Chr7g0243541 | 36.916 | 428 | 174 | 9 | 47 | 468 | 62 | 399 | 6.14e-86 | 269 |
| Msa0317870 | MtrunA17_Chr3g0131581 | 29.048 | 210 | 133 | 6 | 142 | 349 | 67 | 262 | 1.21e-19 | 88.6 |
| Msa0317870 | MtrunA17_Chr8g0385681 | 29.524 | 210 | 132 | 8 | 142 | 349 | 50 | 245 | 7.16e-17 | 80.5 |
| Msa0317870 | MtrunA17_Chr8g0385691 | 29.524 | 210 | 132 | 8 | 142 | 349 | 47 | 242 | 6.43e-16 | 77.4 |
| Msa0317870 | MtrunA17_Chr4g0035381 | 27.434 | 226 | 151 | 6 | 132 | 349 | 74 | 294 | 6.57e-13 | 70.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0317870 | AT1G30690.1 | 66.851 | 362 | 107 | 4 | 108 | 463 | 180 | 534 | 4.17e-177 | 507 |
| Msa0317870 | AT1G30690.1 | 45.283 | 106 | 51 | 2 | 1 | 100 | 1 | 105 | 3.59e-12 | 68.9 |
| Msa0317870 | AT1G30690.2 | 66.851 | 362 | 107 | 4 | 108 | 463 | 180 | 534 | 4.17e-177 | 507 |
| Msa0317870 | AT1G30690.2 | 45.283 | 106 | 51 | 2 | 1 | 100 | 1 | 105 | 3.59e-12 | 68.9 |
| Msa0317870 | AT1G72160.1 | 44.708 | 463 | 213 | 7 | 2 | 461 | 63 | 485 | 8.10e-126 | 375 |
| Msa0317870 | AT4G09160.3 | 43.187 | 433 | 195 | 7 | 34 | 462 | 251 | 636 | 5.39e-119 | 362 |
| Msa0317870 | AT4G09160.2 | 43.187 | 433 | 195 | 7 | 34 | 462 | 251 | 636 | 5.94e-119 | 362 |
| Msa0317870 | AT4G09160.1 | 43.187 | 433 | 195 | 7 | 34 | 462 | 276 | 661 | 8.72e-119 | 362 |
| Msa0317870 | AT3G51670.1 | 48.098 | 368 | 175 | 7 | 109 | 466 | 44 | 405 | 2.09e-116 | 348 |
| Msa0317870 | AT1G22530.2 | 43.832 | 381 | 193 | 9 | 87 | 464 | 286 | 648 | 1.05e-96 | 305 |
| Msa0317870 | AT1G22530.1 | 43.832 | 381 | 193 | 9 | 87 | 464 | 320 | 682 | 1.25e-96 | 305 |
| Msa0317870 | AT1G72150.1 | 43.440 | 343 | 178 | 9 | 126 | 464 | 243 | 573 | 1.62e-87 | 279 |
| Msa0317870 | AT1G01630.1 | 27.143 | 210 | 137 | 6 | 142 | 349 | 50 | 245 | 8.91e-15 | 74.7 |
| Msa0317870 | AT4G08690.2 | 27.626 | 257 | 154 | 10 | 108 | 358 | 14 | 244 | 2.84e-13 | 70.9 |
| Msa0317870 | AT4G08690.1 | 27.626 | 257 | 154 | 10 | 108 | 358 | 14 | 244 | 2.84e-13 | 70.9 |
| Msa0317870 | AT4G08690.3 | 27.626 | 257 | 154 | 10 | 108 | 358 | 14 | 244 | 2.84e-13 | 70.9 |
| Msa0317870 | AT2G21540.3 | 26.724 | 232 | 145 | 8 | 132 | 349 | 85 | 305 | 5.47e-11 | 65.1 |
| Msa0317870 | AT2G21540.5 | 26.724 | 232 | 145 | 8 | 132 | 349 | 85 | 305 | 5.47e-11 | 65.1 |
| Msa0317870 | AT2G21540.6 | 26.724 | 232 | 145 | 8 | 132 | 349 | 85 | 305 | 5.57e-11 | 65.1 |
| Msa0317870 | AT2G21540.2 | 26.724 | 232 | 145 | 8 | 132 | 349 | 85 | 305 | 5.57e-11 | 65.1 |
| Msa0317870 | AT2G21540.1 | 26.724 | 232 | 145 | 8 | 132 | 349 | 85 | 305 | 5.57e-11 | 65.1 |
| Msa0317870 | AT2G21540.4 | 26.724 | 232 | 145 | 8 | 132 | 349 | 85 | 305 | 5.57e-11 | 65.1 |
| Msa0317870 | AT3G24840.1 | 26.523 | 279 | 171 | 11 | 92 | 349 | 48 | 313 | 9.08e-11 | 64.7 |
| Msa0317870 | AT3G24840.6 | 26.523 | 279 | 171 | 11 | 92 | 349 | 48 | 313 | 9.08e-11 | 64.7 |
| Msa0317870 | AT3G24840.4 | 26.523 | 279 | 171 | 11 | 92 | 349 | 48 | 313 | 9.08e-11 | 64.7 |
| Msa0317870 | AT3G24840.2 | 26.523 | 279 | 171 | 11 | 92 | 349 | 48 | 313 | 9.08e-11 | 64.7 |
Find 109 sgRNAs with CRISPR-Local
Find 181 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTCATAATTCAATTCTTTA+AGG | 0.059255 | 2_4:-15947434 | None:intergenic |
| TTTGAGGGCAAGAGAGTTTA+AGG | 0.103122 | 2_4:+15945495 | Msa0317870:CDS |
| GTGCTGGGACTTGGCTGTTT+TGG | 0.168500 | 2_4:+15947199 | Msa0317870:CDS |
| TCTCAAAGAGTTTGAGAAAA+AGG | 0.202003 | 2_4:+15945225 | Msa0317870:CDS |
| GAGATTTATCAAAAGACTTT+TGG | 0.206251 | 2_4:+15945694 | Msa0317870:CDS |
| TACACAATCATTGTTCAAAA+AGG | 0.217177 | 2_4:+15947272 | Msa0317870:CDS |
| AGGAAAAGGATTTGTCTTTA+TGG | 0.230619 | 2_4:+15945413 | Msa0317870:CDS |
| TTTGTTCCATTGTGTGTATT+TGG | 0.253649 | 2_4:+15947465 | Msa0317870:three_prime_UTR |
| TGAGAAATGTTCTTCTTATA+AGG | 0.258619 | 2_4:+15945180 | Msa0317870:CDS |
| CAACAACAACCTCAACCTTC+TGG | 0.270747 | 2_4:-15945084 | None:intergenic |
| AATGAAGATTGATTCGGTTT+TGG | 0.277922 | 2_4:+15945567 | Msa0317870:CDS |
| ATTCTAAGCTCTTTCTTAGA+AGG | 0.296077 | 2_4:-15945850 | None:intergenic |
| AAGAATGATTCTGAGTTCTT+TGG | 0.307280 | 2_4:+15946502 | Msa0317870:CDS |
| GGAAAAGGATTTGTCTTTAT+GGG | 0.314477 | 2_4:+15945414 | Msa0317870:CDS |
| TTGAAACCACCATAGTTAAC+AGG | 0.330603 | 2_4:-15946475 | None:intergenic |
| TGTTGAAGAAGACACTTAAA+TGG | 0.342376 | 2_4:+15945536 | Msa0317870:CDS |
| GTTCACAAGAAGGACCTATT+AGG | 0.377937 | 2_4:+15947306 | Msa0317870:CDS |
| GGTTGAAGAGGTTGAGGAAA+AGG | 0.389487 | 2_4:+15945399 | Msa0317870:CDS |
| AAGGACCAGGTGAATTCTTA+AGG | 0.391707 | 2_4:-15945831 | None:intergenic |
| AACAACAACCTCAACCTTCT+GGG | 0.397542 | 2_4:-15945083 | None:intergenic |
| GAGATGGAGGTGTTCTGTTA+TGG | 0.398108 | 2_4:+15945744 | Msa0317870:CDS |
| TTCTTGAAAGTGTTCCTAAT+AGG | 0.405231 | 2_4:-15947320 | None:intergenic |
| AAACACTTTGTGCTGGGACT+TGG | 0.406964 | 2_4:+15947190 | Msa0317870:CDS |
| TGAAGGAAGAAGAAGAGAAA+AGG | 0.407319 | 2_4:+15945377 | Msa0317870:CDS |
| GAAGGAAGAAGAAGAGAAAA+GGG | 0.413453 | 2_4:+15945378 | Msa0317870:CDS |
| TTTGTTCTTTGAGTTAAGAA+TGG | 0.417407 | 2_4:-15946294 | None:intergenic |
| ACTCCTTCATTTCCTTTGCT+TGG | 0.417448 | 2_4:-15945451 | None:intergenic |
| GTTGAAGCTTTGAAAGAAGA+AGG | 0.427026 | 2_4:+15945331 | Msa0317870:CDS |
| GGTTTATATGAAGTTTGAAA+AGG | 0.433761 | 2_4:-15944818 | None:intergenic |
| GTTGAGGTTGTTGTTGAAGA+AGG | 0.435417 | 2_4:+15945091 | Msa0317870:CDS |
| GCAAACTGTTACAATGTTGC+AGG | 0.436211 | 2_4:+15945882 | Msa0317870:CDS |
| GAAGGAAATGAAGATTGATT+CGG | 0.437171 | 2_4:+15945561 | Msa0317870:CDS |
| AAGAACAAAGAGCAAATTTG+TGG | 0.438490 | 2_4:+15946308 | Msa0317870:CDS |
| AAAGGAAGAAGAGACCAAAA+AGG | 0.439180 | 2_4:+15945309 | Msa0317870:CDS |
| GAAAAGGGTTGAAGAGGTTG+AGG | 0.440546 | 2_4:+15945393 | Msa0317870:CDS |
| TCAGAACTCATTCTCAAGGC+TGG | 0.446261 | 2_4:+15946541 | Msa0317870:CDS |
| TTAACAGGGATCTCCTCAAT+TGG | 0.446328 | 2_4:-15946460 | None:intergenic |
| AACATCTATAGTGTGTTTGA+TGG | 0.447007 | 2_4:+15945667 | Msa0317870:CDS |
| GCAGGACAATTACCCTGAAT+TGG | 0.448528 | 2_4:+15945900 | Msa0317870:CDS |
| CGTTGAAGCTAAGGAATCAA+TGG | 0.450052 | 2_4:+15945132 | Msa0317870:CDS |
| GAGGAGATCCCTGTTAACTA+TGG | 0.464053 | 2_4:+15946466 | Msa0317870:CDS |
| GGTGTTCTGTTATGGAGAAA+TGG | 0.464992 | 2_4:+15945752 | Msa0317870:CDS |
| GAAGTTTGAAAAGGGAAGAA+AGG | 0.470868 | 2_4:-15944809 | None:intergenic |
| AAAGAAGAAGGTGGTGAAGA+GGG | 0.471661 | 2_4:+15945343 | Msa0317870:CDS |
| GTGTATGAGCCCTCATCATT+GGG | 0.473892 | 2_4:-15947254 | None:intergenic |
| ATTTGAAGAATTGTGAAAAG+AGG | 0.477462 | 2_4:-15947682 | None:intergenic |
| AGTGTTTCAGTGACCTTAGC+GGG | 0.483761 | 2_4:-15946339 | None:intergenic |
| TGTGTATGAGCCCTCATCAT+TGG | 0.484245 | 2_4:-15947255 | None:intergenic |
| TTCTCTCACACTTTCCTCAA+AGG | 0.486409 | 2_4:+15944909 | Msa0317870:five_prime_UTR |
| TGAAGAAAACGTTGAAGCTA+AGG | 0.490839 | 2_4:+15945123 | Msa0317870:CDS |
| AGGTTGGAAACACTTTGTGC+TGG | 0.495437 | 2_4:+15947183 | Msa0317870:intron |
| TATAGAGATTCCTGCATTGG+AGG | 0.495571 | 2_4:+15946576 | Msa0317870:CDS |
| TTGCCAAGCAAAGGAAATGA+AGG | 0.497177 | 2_4:+15945448 | Msa0317870:CDS |
| TGAAAAGGGAAGAAAGGAAA+AGG | 0.498364 | 2_4:-15944803 | None:intergenic |
| AGAAGAGAAAAGGGTTGAAG+AGG | 0.500355 | 2_4:+15945387 | Msa0317870:CDS |
| ATTGTGAGAATAACCTTCCC+AGG | 0.508061 | 2_4:-15947350 | None:intergenic |
| AGACATAGTTTCAGCAGTCA+TGG | 0.508382 | 2_4:-15945050 | None:intergenic |
| GTTTATATGAAGTTTGAAAA+GGG | 0.509563 | 2_4:-15944817 | None:intergenic |
| AGCTCTTGTTGTTCTTGTAA+CGG | 0.509938 | 2_4:-15947409 | None:intergenic |
| TTTGATTGAATTTAGATCAA+AGG | 0.509973 | 2_4:+15945249 | Msa0317870:CDS |
| TGTTTCAGAACTCATTCTCA+AGG | 0.510830 | 2_4:+15946537 | Msa0317870:CDS |
| AGAAGAAGCCCAGAAGGTTG+AGG | 0.511990 | 2_4:+15945075 | Msa0317870:CDS |
| TGAATTTAGATCAAAGGTTG+AGG | 0.516018 | 2_4:+15945255 | Msa0317870:CDS |
| ATACATCACTGGCTCAAGAA+AGG | 0.521535 | 2_4:-15947583 | None:intergenic |
| GCTTCTGCTGCTTATATGAA+CGG | 0.524197 | 2_4:+15945613 | Msa0317870:CDS |
| GAGAACAAGACATACCTTTG+AGG | 0.524295 | 2_4:-15944923 | None:intergenic |
| AACTATAGAGATTCCTGCAT+TGG | 0.526873 | 2_4:+15946573 | Msa0317870:CDS |
| GTTCTGAAACAGAAGCATCT+TGG | 0.530758 | 2_4:-15946525 | None:intergenic |
| GGGTTGGGAGGTAAGTTACA+AGG | 0.531439 | 2_4:+15947220 | Msa0317870:CDS |
| TGTGGTTGCTCGTCCCGCTA+AGG | 0.534020 | 2_4:+15946326 | Msa0317870:CDS |
| CAAGAACAATGAACCTGGGA+AGG | 0.538958 | 2_4:+15947337 | Msa0317870:CDS |
| AAATAGGTACATTCCAATTG+AGG | 0.545143 | 2_4:+15946447 | Msa0317870:intron |
| GAAAAGGATTTGTCTTTATG+GGG | 0.548785 | 2_4:+15945415 | Msa0317870:CDS |
| GGTTGGAAACACTTTGTGCT+GGG | 0.556295 | 2_4:+15947184 | Msa0317870:intron |
| AGCTCTTTCTTAGAAGGACC+AGG | 0.558232 | 2_4:-15945844 | None:intergenic |
| AAAGGTAGTGTGAGTTGTGA+GGG | 0.560258 | 2_4:-15944839 | None:intergenic |
| GAAAGTGTGAGAGAAAATTG+AGG | 0.560804 | 2_4:-15944901 | None:intergenic |
| GAAAGAAGAAGGTGGTGAAG+AGG | 0.561752 | 2_4:+15945342 | Msa0317870:CDS |
| ACTTTCAAGAACAATGAACC+TGG | 0.565748 | 2_4:+15947332 | Msa0317870:CDS |
| AAGAAGATAGGTTCACAAGA+AGG | 0.566410 | 2_4:+15947296 | Msa0317870:CDS |
| AGAGGGTGATAAAGTTGTGA+AGG | 0.574412 | 2_4:+15945360 | Msa0317870:CDS |
| GGACAATTACCCTGAATTGG+TGG | 0.580178 | 2_4:+15945903 | Msa0317870:CDS |
| CAGAAGCTGAATTTGAAACC+AGG | 0.580201 | 2_4:+15945778 | Msa0317870:CDS |
| ATGAAACCAAATACACACAA+TGG | 0.580373 | 2_4:-15947471 | None:intergenic |
| GTCTCAAGAAGAAGCCCAGA+AGG | 0.581073 | 2_4:+15945069 | Msa0317870:CDS |
| GGAATTTGTTCCCAATGATG+AGG | 0.582127 | 2_4:+15947244 | Msa0317870:CDS |
| GTAGTTGTTGTGTTTGTGAA+AGG | 0.582225 | 2_4:-15944857 | None:intergenic |
| TTAACTATGGTGGTTTCAAG+AGG | 0.582409 | 2_4:+15946479 | Msa0317870:CDS |
| AAAGGGAAGAAAGGAAAAGG+TGG | 0.590992 | 2_4:-15944800 | None:intergenic |
| GAGATCCCTGTTAACTATGG+TGG | 0.591967 | 2_4:+15946469 | Msa0317870:CDS |
| GAATTTGTTCCCAATGATGA+GGG | 0.593569 | 2_4:+15947245 | Msa0317870:CDS |
| CAGTGTTTCAGTGACCTTAG+CGG | 0.595987 | 2_4:-15946340 | None:intergenic |
| AGATGAGATAGATACATCAC+TGG | 0.598675 | 2_4:-15947594 | None:intergenic |
| GAAGACACTTAAATGGAGGA+AGG | 0.599488 | 2_4:+15945543 | Msa0317870:CDS |
| AGGAAATGAAGGAGTTGATG+TGG | 0.611522 | 2_4:+15945459 | Msa0317870:CDS |
| TTGAGAGCATAGTACCAGAA+AGG | 0.611651 | 2_4:-15946258 | None:intergenic |
| AATGACCTTAAGAATTCACC+TGG | 0.635865 | 2_4:+15945826 | Msa0317870:CDS |
| GAAAGGTAGTGTGAGTTGTG+AGG | 0.639650 | 2_4:-15944840 | None:intergenic |
| CTATAGATGTTGTAACACAC+AGG | 0.639890 | 2_4:-15945655 | None:intergenic |
| CTTTCAAGAACAATGAACCT+GGG | 0.640545 | 2_4:+15947333 | Msa0317870:CDS |
| AGCAAAGAAGAAACACCACC+TGG | 0.660485 | 2_4:-15945796 | None:intergenic |
| AAGGGAAGAAAGGAAAAGGT+GGG | 0.660659 | 2_4:-15944799 | None:intergenic |
| TGAAACCACCATAGTTAACA+GGG | 0.661394 | 2_4:-15946474 | None:intergenic |
| GAAGCTTTGAAAGAAGAAGG+TGG | 0.663635 | 2_4:+15945334 | Msa0317870:CDS |
| TGAAGAAGACACTTAAATGG+AGG | 0.668116 | 2_4:+15945539 | Msa0317870:CDS |
| ATGAACGGTGTTGATCGTGA+AGG | 0.679355 | 2_4:+15945628 | Msa0317870:CDS |
| TTGGGAGGTAAGTTACAAGG+AGG | 0.694505 | 2_4:+15947223 | Msa0317870:CDS |
| TATAGATGTTGTAACACACA+GGG | 0.704028 | 2_4:-15945654 | None:intergenic |
| AAGCTGAATTTGAAACCAGG+TGG | 0.704521 | 2_4:+15945781 | Msa0317870:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTTAGTAACAATATAATGT+CGG | - | chr2_4:15946080-15946099 | None:intergenic | 15.0% |
| !! | GTTTATATGAAGTTTGAAAA+GGG | - | chr2_4:15944820-15944839 | None:intergenic | 20.0% |
| !! | TTTGATTGAATTTAGATCAA+AGG | + | chr2_4:15945249-15945268 | Msa0317870:CDS | 20.0% |
| !!! | AGATTTATCAAAAGACTTTT+GGG | + | chr2_4:15945695-15945714 | Msa0317870:CDS | 20.0% |
| !! | TTAAATCGTTTAATCAAACA+TGG | + | chr2_4:15947005-15947024 | Msa0317870:intron | 20.0% |
| !!! | TCTAAAATCAAATGCAAAAT+TGG | + | chr2_4:15947129-15947148 | Msa0317870:intron | 20.0% |
| !!! | AAGGTTTTTTGTCTTTTAAT+AGG | + | chr2_4:15947163-15947182 | Msa0317870:intron | 20.0% |
| !!! | TTTTTTGTCTTTTAATAGGT+TGG | + | chr2_4:15947167-15947186 | Msa0317870:intron | 20.0% |
| !! | CTTCATAATTCAATTCTTTA+AGG | - | chr2_4:15947437-15947456 | None:intergenic | 20.0% |
| !!! | TTCATTTAGATTTTGAAAGT+AGG | + | chr2_4:15947489-15947508 | Msa0317870:three_prime_UTR | 20.0% |
| !!! | TTTTTTAGTTTAAGTCTTCA+AGG | - | chr2_4:15947652-15947671 | None:intergenic | 20.0% |
| !! | GAAGACTTAAACTAAAAAAT+TGG | + | chr2_4:15947653-15947672 | Msa0317870:three_prime_UTR | 20.0% |
| ! | GGTTTATATGAAGTTTGAAA+AGG | - | chr2_4:15944821-15944840 | None:intergenic | 25.0% |
| !! | TTCTCATTGCTTTAAATATC+TGG | + | chr2_4:15944948-15944967 | Msa0317870:intron | 25.0% |
| !! | TCTCATTGCTTTAAATATCT+GGG | + | chr2_4:15944949-15944968 | Msa0317870:intron | 25.0% |
| ! | TGAGAAATGTTCTTCTTATA+AGG | + | chr2_4:15945180-15945199 | Msa0317870:CDS | 25.0% |
| !! | TTCTTCCTTTTTCTCAAAAA+GGG | - | chr2_4:15945299-15945318 | None:intergenic | 25.0% |
| !! | GAGATTTATCAAAAGACTTT+TGG | + | chr2_4:15945694-15945713 | Msa0317870:CDS | 25.0% |
| ! | AAAAAACCTGAAGGAATTTA+AGG | - | chr2_4:15945958-15945977 | None:intergenic | 25.0% |
| !! | TATTTATGTTGTATTGGTGT+TGG | + | chr2_4:15946111-15946130 | Msa0317870:intron | 25.0% |
| !! | TTTGTTCTTTGAGTTAAGAA+TGG | - | chr2_4:15946297-15946316 | None:intergenic | 25.0% |
| !!! | GAAATGATCAATTGATTTTG+AGG | - | chr2_4:15946377-15946396 | None:intergenic | 25.0% |
| !! | TTTGAGATGGAAAGTAAATA+AGG | - | chr2_4:15946430-15946449 | None:intergenic | 25.0% |
| ! | ATTTACTTTCCATCTCAAAT+AGG | + | chr2_4:15946431-15946450 | Msa0317870:intron | 25.0% |
| ! | CTTATACATAAGAACTGATA+TGG | + | chr2_4:15946959-15946978 | Msa0317870:intron | 25.0% |
| ! | AAAATTGGACACATTCTAAA+AGG | + | chr2_4:15947144-15947163 | Msa0317870:intron | 25.0% |
| ! | TACACAATCATTGTTCAAAA+AGG | + | chr2_4:15947272-15947291 | Msa0317870:CDS | 25.0% |
| ! | ACACAATCATTGTTCAAAAA+GGG | + | chr2_4:15947273-15947292 | Msa0317870:CDS | 25.0% |
| !!! | ATTTAGATTTTGAAAGTAGG+TGG | + | chr2_4:15947492-15947511 | Msa0317870:three_prime_UTR | 25.0% |
| !!! | AGAGTTTTGAAGACTAAAAA+AGG | + | chr2_4:15947528-15947547 | Msa0317870:three_prime_UTR | 25.0% |
| !!! | CATTTCTCAACTGTTTTTGT+GGG | - | chr2_4:15945169-15945188 | None:intergenic | 30.0% |
| !!! | ACATTTCTCAACTGTTTTTG+TGG | - | chr2_4:15945170-15945189 | None:intergenic | 30.0% |
| TCTCAAAGAGTTTGAGAAAA+AGG | + | chr2_4:15945225-15945244 | Msa0317870:CDS | 30.0% | |
| TGAATTTAGATCAAAGGTTG+AGG | + | chr2_4:15945255-15945274 | Msa0317870:CDS | 30.0% | |
| ! | CTTCTTCCTTTTTCTCAAAA+AGG | - | chr2_4:15945300-15945319 | None:intergenic | 30.0% |
| ! | TTTCAAAGCTTCAACCTTTT+TGG | - | chr2_4:15945326-15945345 | None:intergenic | 30.0% |
| AGGAAAAGGATTTGTCTTTA+TGG | + | chr2_4:15945413-15945432 | Msa0317870:CDS | 30.0% | |
| GGAAAAGGATTTGTCTTTAT+GGG | + | chr2_4:15945414-15945433 | Msa0317870:CDS | 30.0% | |
| GAAAAGGATTTGTCTTTATG+GGG | + | chr2_4:15945415-15945434 | Msa0317870:CDS | 30.0% | |
| !!! | TGGTTTTGTTGAAGTTTTTG+AGG | + | chr2_4:15945479-15945498 | Msa0317870:CDS | 30.0% |
| !!! | GGTTTTGTTGAAGTTTTTGA+GGG | + | chr2_4:15945480-15945499 | Msa0317870:CDS | 30.0% |
| TGTTGAAGAAGACACTTAAA+TGG | + | chr2_4:15945536-15945555 | Msa0317870:CDS | 30.0% | |
| GAAGGAAATGAAGATTGATT+CGG | + | chr2_4:15945561-15945580 | Msa0317870:CDS | 30.0% | |
| !!! | AATGAAGATTGATTCGGTTT+TGG | + | chr2_4:15945567-15945586 | Msa0317870:CDS | 30.0% |
| TATAGATGTTGTAACACACA+GGG | - | chr2_4:15945657-15945676 | None:intergenic | 30.0% | |
| AACATCTATAGTGTGTTTGA+TGG | + | chr2_4:15945667-15945686 | Msa0317870:CDS | 30.0% | |
| !! | AGAGAAAAGAGTTTTTGAGA+TGG | + | chr2_4:15945728-15945747 | Msa0317870:CDS | 30.0% |
| ATTCTAAGCTCTTTCTTAGA+AGG | - | chr2_4:15945853-15945872 | None:intergenic | 30.0% | |
| TGAGAAAGAAAAAAACCTGA+AGG | - | chr2_4:15945967-15945986 | None:intergenic | 30.0% | |
| TTCGCGTATTTATGTTGTAT+TGG | + | chr2_4:15946105-15946124 | Msa0317870:intron | 30.0% | |
| TACTATAAACCTATCTAGCA+AGG | - | chr2_4:15946184-15946203 | None:intergenic | 30.0% | |
| ! | TTTTCATCAATGTTCCTTTC+TGG | + | chr2_4:15946244-15946263 | Msa0317870:CDS | 30.0% |
| AAGAACAAAGAGCAAATTTG+TGG | + | chr2_4:15946308-15946327 | Msa0317870:CDS | 30.0% | |
| AAATAGGTACATTCCAATTG+AGG | + | chr2_4:15946447-15946466 | Msa0317870:intron | 30.0% | |
| AAGAATGATTCTGAGTTCTT+TGG | + | chr2_4:15946502-15946521 | Msa0317870:CDS | 30.0% | |
| ATAGTAGCTGTGAGATTATT+TGG | + | chr2_4:15946846-15946865 | Msa0317870:intron | 30.0% | |
| TAGTAGCTGTGAGATTATTT+GGG | + | chr2_4:15946847-15946866 | Msa0317870:intron | 30.0% | |
| TATGGTGTGAATTCTTAACA+TGG | + | chr2_4:15946977-15946996 | Msa0317870:intron | 30.0% | |
| !! | GCATTTGATTTTAGAAGAAC+TGG | - | chr2_4:15947124-15947143 | None:intergenic | 30.0% |
| !! | TTCTTGAAAGTGTTCCTAAT+AGG | - | chr2_4:15947323-15947342 | None:intergenic | 30.0% |
| ACTCATCAAACAAAAAGAAG+AGG | + | chr2_4:15947378-15947397 | Msa0317870:CDS | 30.0% | |
| CTCATCAAACAAAAAGAAGA+GGG | + | chr2_4:15947379-15947398 | Msa0317870:CDS | 30.0% | |
| TTTGTTCCATTGTGTGTATT+TGG | + | chr2_4:15947465-15947484 | Msa0317870:three_prime_UTR | 30.0% | |
| ATGAAACCAAATACACACAA+TGG | - | chr2_4:15947474-15947493 | None:intergenic | 30.0% | |
| TGAAAAGGGAAGAAAGGAAA+AGG | - | chr2_4:15944806-15944825 | None:intergenic | 35.0% | |
| GAAGTTTGAAAAGGGAAGAA+AGG | - | chr2_4:15944812-15944831 | None:intergenic | 35.0% | |
| GTAGTTGTTGTGTTTGTGAA+AGG | - | chr2_4:15944860-15944879 | None:intergenic | 35.0% | |
| ! | GAAAGTGTGAGAGAAAATTG+AGG | - | chr2_4:15944904-15944923 | None:intergenic | 35.0% |
| TGAAGAAAACGTTGAAGCTA+AGG | + | chr2_4:15945123-15945142 | Msa0317870:CDS | 35.0% | |
| !! | GAACACCCTTTTTGAGAAAA+AGG | + | chr2_4:15945291-15945310 | Msa0317870:CDS | 35.0% |
| AAAGGAAGAAGAGACCAAAA+AGG | + | chr2_4:15945309-15945328 | Msa0317870:CDS | 35.0% | |
| !! | GTTGAAGCTTTGAAAGAAGA+AGG | + | chr2_4:15945331-15945350 | Msa0317870:CDS | 35.0% |
| TGAAGGAAGAAGAAGAGAAA+AGG | + | chr2_4:15945377-15945396 | Msa0317870:CDS | 35.0% | |
| GAAGGAAGAAGAAGAGAAAA+GGG | + | chr2_4:15945378-15945397 | Msa0317870:CDS | 35.0% | |
| TGAAGAAGACACTTAAATGG+AGG | + | chr2_4:15945539-15945558 | Msa0317870:CDS | 35.0% | |
| !!! | GGAAGATTTTGGTTCTGATT+TGG | + | chr2_4:15945591-15945610 | Msa0317870:CDS | 35.0% |
| CTATAGATGTTGTAACACAC+AGG | - | chr2_4:15945658-15945677 | None:intergenic | 35.0% | |
| !!! | GAAAAGAGTTTTTGAGATGG+AGG | + | chr2_4:15945731-15945750 | Msa0317870:CDS | 35.0% |
| AATGACCTTAAGAATTCACC+TGG | + | chr2_4:15945826-15945845 | Msa0317870:CDS | 35.0% | |
| !!! | CATTTTTTGCCACCAATTCA+GGG | - | chr2_4:15945915-15945934 | None:intergenic | 35.0% |
| !!! | ACATTTTTTGCCACCAATTC+AGG | - | chr2_4:15945916-15945935 | None:intergenic | 35.0% |
| TTCATGAAATGTCTAGTGTC+CGG | - | chr2_4:15946152-15946171 | None:intergenic | 35.0% | |
| TGGAATGTACCTATTTGAGA+TGG | - | chr2_4:15946443-15946462 | None:intergenic | 35.0% | |
| TGAAACCACCATAGTTAACA+GGG | - | chr2_4:15946477-15946496 | None:intergenic | 35.0% | |
| TTGAAACCACCATAGTTAAC+AGG | - | chr2_4:15946478-15946497 | None:intergenic | 35.0% | |
| TTAACTATGGTGGTTTCAAG+AGG | + | chr2_4:15946479-15946498 | Msa0317870:CDS | 35.0% | |
| TGTTTCAGAACTCATTCTCA+AGG | + | chr2_4:15946537-15946556 | Msa0317870:CDS | 35.0% | |
| AACTATAGAGATTCCTGCAT+TGG | + | chr2_4:15946573-15946592 | Msa0317870:CDS | 35.0% | |
| CATGGTGTGAATTCTTAACT+TGG | + | chr2_4:15947023-15947042 | Msa0317870:intron | 35.0% | |
| ! | GAATTTGTTCCCAATGATGA+GGG | + | chr2_4:15947245-15947264 | Msa0317870:CDS | 35.0% |
| GTTCAAAAAGGGAAGAAGAT+AGG | + | chr2_4:15947284-15947303 | Msa0317870:CDS | 35.0% | |
| AAGAAGATAGGTTCACAAGA+AGG | + | chr2_4:15947296-15947315 | Msa0317870:CDS | 35.0% | |
| ACTTTCAAGAACAATGAACC+TGG | + | chr2_4:15947332-15947351 | Msa0317870:CDS | 35.0% | |
| CTTTCAAGAACAATGAACCT+GGG | + | chr2_4:15947333-15947352 | Msa0317870:CDS | 35.0% | |
| !! | AGCTCTTGTTGTTCTTGTAA+CGG | - | chr2_4:15947412-15947431 | None:intergenic | 35.0% |
| AGATGAGATAGATACATCAC+TGG | - | chr2_4:15947597-15947616 | None:intergenic | 35.0% | |
| AAAGGTAGTGTGAGTTGTGA+GGG | - | chr2_4:15944842-15944861 | None:intergenic | 40.0% | |
| TTCTCTCACACTTTCCTCAA+AGG | + | chr2_4:15944909-15944928 | Msa0317870:five_prime_UTR | 40.0% | |
| GAGAACAAGACATACCTTTG+AGG | - | chr2_4:15944926-15944945 | None:intergenic | 40.0% | |
| AGACATAGTTTCAGCAGTCA+TGG | - | chr2_4:15945053-15945072 | None:intergenic | 40.0% | |
| AACAACAACCTCAACCTTCT+GGG | - | chr2_4:15945086-15945105 | None:intergenic | 40.0% | |
| ! | GTTGAGGTTGTTGTTGAAGA+AGG | + | chr2_4:15945091-15945110 | Msa0317870:CDS | 40.0% |
| CGTTGAAGCTAAGGAATCAA+TGG | + | chr2_4:15945132-15945151 | Msa0317870:CDS | 40.0% | |
| !! | AAGGTTGAGGAAGCTGTTTT+AGG | + | chr2_4:15945268-15945287 | Msa0317870:CDS | 40.0% |
| !! | AGGTTGAGGAAGCTGTTTTA+GGG | + | chr2_4:15945269-15945288 | Msa0317870:CDS | 40.0% |
| !! | GAAGCTTTGAAAGAAGAAGG+TGG | + | chr2_4:15945334-15945353 | Msa0317870:CDS | 40.0% |
| AAAGAAGAAGGTGGTGAAGA+GGG | + | chr2_4:15945343-15945362 | Msa0317870:CDS | 40.0% | |
| AGAGGGTGATAAAGTTGTGA+AGG | + | chr2_4:15945360-15945379 | Msa0317870:CDS | 40.0% | |
| AGAAGAGAAAAGGGTTGAAG+AGG | + | chr2_4:15945387-15945406 | Msa0317870:CDS | 40.0% | |
| TTGCCAAGCAAAGGAAATGA+AGG | + | chr2_4:15945448-15945467 | Msa0317870:CDS | 40.0% | |
| ACTCCTTCATTTCCTTTGCT+TGG | - | chr2_4:15945454-15945473 | None:intergenic | 40.0% | |
| !! | AGGAAATGAAGGAGTTGATG+TGG | + | chr2_4:15945459-15945478 | Msa0317870:CDS | 40.0% |
| TTTGAGGGCAAGAGAGTTTA+AGG | + | chr2_4:15945495-15945514 | Msa0317870:CDS | 40.0% | |
| GAAGACACTTAAATGGAGGA+AGG | + | chr2_4:15945543-15945562 | Msa0317870:CDS | 40.0% | |
| !!! | GAAGATTGATTCGGTTTTGG+AGG | + | chr2_4:15945570-15945589 | Msa0317870:CDS | 40.0% |
| !!! | TCGGTTTTGGAGGAAGATTT+TGG | + | chr2_4:15945580-15945599 | Msa0317870:CDS | 40.0% |
| ! | GCTTCTGCTGCTTATATGAA+CGG | + | chr2_4:15945613-15945632 | Msa0317870:CDS | 40.0% |
| !! | TCAAAAGACTTTTGGGAGTG+AGG | + | chr2_4:15945702-15945721 | Msa0317870:CDS | 40.0% |
| GGTGTTCTGTTATGGAGAAA+TGG | + | chr2_4:15945752-15945771 | Msa0317870:CDS | 40.0% | |
| ! | CAGAAGCTGAATTTGAAACC+AGG | + | chr2_4:15945778-15945797 | Msa0317870:CDS | 40.0% |
| ! | AAGCTGAATTTGAAACCAGG+TGG | + | chr2_4:15945781-15945800 | Msa0317870:CDS | 40.0% |
| AAGGACCAGGTGAATTCTTA+AGG | - | chr2_4:15945834-15945853 | None:intergenic | 40.0% | |
| GCAAACTGTTACAATGTTGC+AGG | + | chr2_4:15945882-15945901 | Msa0317870:CDS | 40.0% | |
| CACACTCCTTAAATTCCTTC+AGG | + | chr2_4:15945949-15945968 | Msa0317870:intron | 40.0% | |
| CCACATATCAATGTCATGTC+CGG | - | chr2_4:15946030-15946049 | None:intergenic | 40.0% | |
| TCATGAAATGTCTAGTGTCC+GGG | - | chr2_4:15946151-15946170 | None:intergenic | 40.0% | |
| TCTGTAATGCCTTGCTAGAT+AGG | + | chr2_4:15946172-15946191 | Msa0317870:intron | 40.0% | |
| ! | TTGAGAGCATAGTACCAGAA+AGG | - | chr2_4:15946261-15946280 | None:intergenic | 40.0% |
| TTAACAGGGATCTCCTCAAT+TGG | - | chr2_4:15946463-15946482 | None:intergenic | 40.0% | |
| !! | GTTCTGAAACAGAAGCATCT+TGG | - | chr2_4:15946528-15946547 | None:intergenic | 40.0% |
| TATAGAGATTCCTGCATTGG+AGG | + | chr2_4:15946576-15946595 | Msa0317870:CDS | 40.0% | |
| ! | GTAGTTTTTACCTCCAATGC+AGG | - | chr2_4:15946589-15946608 | None:intergenic | 40.0% |
| TCCACTCTATAGTGTGCTTT+AGG | + | chr2_4:15946636-15946655 | Msa0317870:intron | 40.0% | |
| TCCTAAAGCACACTATAGAG+TGG | - | chr2_4:15946640-15946659 | None:intergenic | 40.0% | |
| AGGAATATGCAGTGCATGTT+AGG | + | chr2_4:15946656-15946675 | Msa0317870:intron | 40.0% | |
| TTTGAGAAAGACTCTGAGCT+AGG | + | chr2_4:15946755-15946774 | Msa0317870:intron | 40.0% | |
| ! | TTTTGGACAAGTGCATGTGA+GGG | + | chr2_4:15946786-15946805 | Msa0317870:intron | 40.0% |
| CTTGTAGAGCTCATGCATAA+AGG | - | chr2_4:15946890-15946909 | None:intergenic | 40.0% | |
| ! | GGAATTTGTTCCCAATGATG+AGG | + | chr2_4:15947244-15947263 | Msa0317870:CDS | 40.0% |
| GTTCACAAGAAGGACCTATT+AGG | + | chr2_4:15947306-15947325 | Msa0317870:CDS | 40.0% | |
| ATTGTGAGAATAACCTTCCC+AGG | - | chr2_4:15947353-15947372 | None:intergenic | 40.0% | |
| !! | ATACATCACTGGCTCAAGAA+AGG | - | chr2_4:15947586-15947605 | None:intergenic | 40.0% |
| GAAAGGTAGTGTGAGTTGTG+AGG | - | chr2_4:15944843-15944862 | None:intergenic | 45.0% | |
| CAACAACAACCTCAACCTTC+TGG | - | chr2_4:15945087-15945106 | None:intergenic | 45.0% | |
| GAAAGAAGAAGGTGGTGAAG+AGG | + | chr2_4:15945342-15945361 | Msa0317870:CDS | 45.0% | |
| GAAAAGGGTTGAAGAGGTTG+AGG | + | chr2_4:15945393-15945412 | Msa0317870:CDS | 45.0% | |
| GGTTGAAGAGGTTGAGGAAA+AGG | + | chr2_4:15945399-15945418 | Msa0317870:CDS | 45.0% | |
| !!! | GTGTCACTTTTGCCAAGCAA+AGG | + | chr2_4:15945439-15945458 | Msa0317870:CDS | 45.0% |
| !! | ATGAACGGTGTTGATCGTGA+AGG | + | chr2_4:15945628-15945647 | Msa0317870:CDS | 45.0% |
| !! | GAGATGGAGGTGTTCTGTTA+TGG | + | chr2_4:15945744-15945763 | Msa0317870:CDS | 45.0% |
| AGCAAAGAAGAAACACCACC+TGG | - | chr2_4:15945799-15945818 | None:intergenic | 45.0% | |
| AGCTCTTTCTTAGAAGGACC+AGG | - | chr2_4:15945847-15945866 | None:intergenic | 45.0% | |
| GCAGGACAATTACCCTGAAT+TGG | + | chr2_4:15945900-15945919 | Msa0317870:CDS | 45.0% | |
| GGACAATTACCCTGAATTGG+TGG | + | chr2_4:15945903-15945922 | Msa0317870:CDS | 45.0% | |
| CCGGACATGACATTGATATG+TGG | + | chr2_4:15946027-15946046 | Msa0317870:intron | 45.0% | |
| AGTGTTTCAGTGACCTTAGC+GGG | - | chr2_4:15946342-15946361 | None:intergenic | 45.0% | |
| CAGTGTTTCAGTGACCTTAG+CGG | - | chr2_4:15946343-15946362 | None:intergenic | 45.0% | |
| GAGGAGATCCCTGTTAACTA+TGG | + | chr2_4:15946466-15946485 | Msa0317870:CDS | 45.0% | |
| GAGATCCCTGTTAACTATGG+TGG | + | chr2_4:15946469-15946488 | Msa0317870:CDS | 45.0% | |
| TCAGAACTCATTCTCAAGGC+TGG | + | chr2_4:15946541-15946560 | Msa0317870:CDS | 45.0% | |
| !!! | TGAGCTAGGCTGGTTTGTTT+TGG | + | chr2_4:15946769-15946788 | Msa0317870:intron | 45.0% |
| !! | GTTTTGGACAAGTGCATGTG+AGG | + | chr2_4:15946785-15946804 | Msa0317870:intron | 45.0% |
| AGGTTGGAAACACTTTGTGC+TGG | + | chr2_4:15947183-15947202 | Msa0317870:intron | 45.0% | |
| GGTTGGAAACACTTTGTGCT+GGG | + | chr2_4:15947184-15947203 | Msa0317870:intron | 45.0% | |
| AAACACTTTGTGCTGGGACT+TGG | + | chr2_4:15947190-15947209 | Msa0317870:CDS | 45.0% | |
| TTGGGAGGTAAGTTACAAGG+AGG | + | chr2_4:15947223-15947242 | Msa0317870:CDS | 45.0% | |
| GTGTATGAGCCCTCATCATT+GGG | - | chr2_4:15947257-15947276 | None:intergenic | 45.0% | |
| TGTGTATGAGCCCTCATCAT+TGG | - | chr2_4:15947258-15947277 | None:intergenic | 45.0% | |
| CAAGAACAATGAACCTGGGA+AGG | + | chr2_4:15947337-15947356 | Msa0317870:CDS | 45.0% | |
| GTCTCAAGAAGAAGCCCAGA+AGG | + | chr2_4:15945069-15945088 | Msa0317870:CDS | 50.0% | |
| AGAAGAAGCCCAGAAGGTTG+AGG | + | chr2_4:15945075-15945094 | Msa0317870:CDS | 50.0% | |
| GTTGACACTGACACTGACAC+CGG | + | chr2_4:15946008-15946027 | Msa0317870:intron | 50.0% | |
| TTGGACACTAGCATGTGTCC+CGG | + | chr2_4:15946130-15946149 | Msa0317870:intron | 50.0% | |
| AGAAAGACTCTGAGCTAGGC+TGG | + | chr2_4:15946759-15946778 | Msa0317870:intron | 50.0% | |
| !! | TGCTGGGACTTGGCTGTTTT+GGG | + | chr2_4:15947200-15947219 | Msa0317870:CDS | 50.0% |
| !!! | GGACTTGGCTGTTTTGGGTT+GGG | + | chr2_4:15947205-15947224 | Msa0317870:CDS | 50.0% |
| GGGTTGGGAGGTAAGTTACA+AGG | + | chr2_4:15947220-15947239 | Msa0317870:CDS | 50.0% | |
| ! | GTGCTGGGACTTGGCTGTTT+TGG | + | chr2_4:15947199-15947218 | Msa0317870:CDS | 55.0% |
| !! | GGGACTTGGCTGTTTTGGGT+TGG | + | chr2_4:15947204-15947223 | Msa0317870:CDS | 55.0% |
| !!! | CTTGGCTGTTTTGGGTTGGG+AGG | + | chr2_4:15947208-15947227 | Msa0317870:CDS | 55.0% |
| TGTGGTTGCTCGTCCCGCTA+AGG | + | chr2_4:15946326-15946345 | Msa0317870:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_4 | gene | 15944801 | 15947689 | 15944801 | ID=Msa0317870;Name=Msa0317870 |
| chr2_4 | mRNA | 15944801 | 15947689 | 15944801 | ID=Msa0317870-mRNA-1;Parent=Msa0317870;Name=Msa0317870-mRNA-1;_AED=0.12;_eAED=0.12;_QI=143|1|1|1|0.75|0.6|5|250|468 |
| chr2_4 | exon | 15944801 | 15944930 | 15944801 | ID=Msa0317870-mRNA-1:exon:6003;Parent=Msa0317870-mRNA-1 |
| chr2_4 | exon | 15945039 | 15945933 | 15945039 | ID=Msa0317870-mRNA-1:exon:6004;Parent=Msa0317870-mRNA-1 |
| chr2_4 | exon | 15946243 | 15946367 | 15946243 | ID=Msa0317870-mRNA-1:exon:6005;Parent=Msa0317870-mRNA-1 |
| chr2_4 | exon | 15946453 | 15946597 | 15946453 | ID=Msa0317870-mRNA-1:exon:6006;Parent=Msa0317870-mRNA-1 |
| chr2_4 | exon | 15947185 | 15947689 | 15947185 | ID=Msa0317870-mRNA-1:exon:6007;Parent=Msa0317870-mRNA-1 |
| chr2_4 | five_prime_UTR | 15944801 | 15944930 | 15944801 | ID=Msa0317870-mRNA-1:five_prime_utr;Parent=Msa0317870-mRNA-1 |
| chr2_4 | five_prime_UTR | 15945039 | 15945051 | 15945039 | ID=Msa0317870-mRNA-1:five_prime_utr;Parent=Msa0317870-mRNA-1 |
| chr2_4 | CDS | 15945052 | 15945933 | 15945052 | ID=Msa0317870-mRNA-1:cds;Parent=Msa0317870-mRNA-1 |
| chr2_4 | CDS | 15946243 | 15946367 | 15946243 | ID=Msa0317870-mRNA-1:cds;Parent=Msa0317870-mRNA-1 |
| chr2_4 | CDS | 15946453 | 15946597 | 15946453 | ID=Msa0317870-mRNA-1:cds;Parent=Msa0317870-mRNA-1 |
| chr2_4 | CDS | 15947185 | 15947439 | 15947185 | ID=Msa0317870-mRNA-1:cds;Parent=Msa0317870-mRNA-1 |
| chr2_4 | three_prime_UTR | 15947440 | 15947689 | 15947440 | ID=Msa0317870-mRNA-1:three_prime_utr;Parent=Msa0317870-mRNA-1 |
| Gene Sequence |
| Protein sequence |
