AlfalfaGEDB | Msa1389200

M. sativa cultivar zhongmu-4 / Msa1389200

KEGG: -
GO: -
PFAM: PF13947.9

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1389200	RHN77992.1	81.524	433	73	5	4	433	2	430	0.0	710

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1389200	sp\|P93604\|LRK10_WHEAT	35.938	256	122	6	194	417	180	425	4.55e-37	146

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1389200	A0A396JKW1	81.524	433	73	5	4	433	2	430	0.0	710

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0021340	Msa1389200	0.862082	6.518049e-64	-8.615850e-47
Msa0026450	Msa1389200	0.845983	2.889593e-59	-8.615850e-47
Msa0050820	Msa1389200	0.809104	2.231288e-50	-8.615850e-47
Msa0077400	Msa1389200	0.810135	1.339714e-50	-8.615850e-47
Msa0145260	Msa1389200	0.838920	2.158218e-57	-8.615850e-47
Msa0165520	Msa1389200	0.838572	2.655769e-57	-8.615850e-47
Msa0212040	Msa1389200	0.817277	3.585375e-52	-8.615850e-47
Msa0225110	Msa1389200	0.814714	1.338680e-51	-8.615850e-47
Msa0225220	Msa1389200	0.800769	1.233664e-48	-8.615850e-47
Msa0229590	Msa1389200	0.822886	1.863651e-53	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1389200	MtrunA17_Chr1g0160711	81.524	433	73	5	4	433	2	430	0.0	710
Msa1389200	MtrunA17_Chr1g0160761	78.685	441	82	4	1	433	1	437	0.0	686
Msa1389200	MtrunA17_Chr1g0160721	65.929	452	125	6	1	433	12	453	0.0	551
Msa1389200	MtrunA17_Chr1g0160661	66.210	438	133	5	1	433	27	454	0.0	550
Msa1389200	MtrunA17_Chr1g0160561	63.053	452	136	9	3	433	7	448	0.0	534
Msa1389200	MtrunA17_Chr1g0160701	64.252	428	128	9	18	433	33	447	5.13e-175	504
Msa1389200	MtrunA17_Chr1g0160531	67.364	239	64	3	196	433	1	226	1.16e-104	317
Msa1389200	MtrunA17_Chr1g0158151	38.608	474	213	14	25	433	27	487	5.99e-90	287
Msa1389200	MtrunA17_Chr1g0157791	39.248	479	204	18	24	433	28	488	1.37e-89	286
Msa1389200	MtrunA17_Chr1g0158761	41.333	450	218	18	8	433	9	436	7.21e-88	280

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1389200	AT5G38260.1	29.730	444	252	21	7	433	21	421	1.32e-32	130
Msa1389200	AT1G66910.2	41.509	159	85	4	281	433	289	445	1.84e-30	124
Msa1389200	AT1G66910.1	38.043	184	102	5	260	433	267	448	2.37e-30	124
Msa1389200	AT1G66980.3	50.459	109	53	1	315	422	815	923	5.06e-30	124
Msa1389200	AT1G66980.1	50.459	109	53	1	315	422	788	896	5.65e-30	123
Msa1389200	AT1G66980.4	50.459	109	53	1	315	422	771	879	5.72e-30	123
Msa1389200	AT1G66980.2	50.459	109	53	1	315	422	817	925	5.92e-30	123
Msa1389200	AT1G70250.1	44.286	140	74	3	277	415	408	544	6.39e-30	123
Msa1389200	AT5G38240.3	48.120	133	56	3	287	413	228	353	1.13e-29	121
Msa1389200	AT5G38240.1	48.120	133	56	3	287	413	292	417	1.14e-29	122

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Find 83 sgRNAs with CRISPR-Local

Find 226 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATCTTGATCACTGGACT+TGG	0.516719	tig0021250:+20220	None:intergenic
AAACATCTATCAATGTATGA+TGG	0.560371	tig0021250:-20419	Msa1389200:CDS
AAACTAGGCAATGGAGGGTA+TGG	0.487547	tig0021250:-20305	Msa1389200:CDS
AAAGACAGTCCAGAAGAATG+TGG	0.689791	tig0021250:-21618	Msa1389200:CDS
AACATAGGTTTCGTCAATAT+AGG	0.476230	tig0021250:+21342	None:intergenic
AACCAGCCTCATTGTAAATA+TGG	0.286693	tig0021250:-21021	Msa1389200:intron
AACCATATTTACAATGAGGC+TGG	0.517738	tig0021250:+21019	None:intergenic
AAGACAAAACTAGGCAATGG+AGG	0.565832	tig0021250:-20311	Msa1389200:CDS
AATTAGCAACAAAGTGTATG+GGG	0.626387	tig0021250:-21706	Msa1389200:CDS
ACAATAGCATCATCCCTATA+AGG	0.400813	tig0021250:-20373	Msa1389200:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
CTAATTAGCAACAAAGTGTA+TGG	-	tig0021250:20076-20095	Msa1389200:CDS	30.0%
AATTAGCAACAAAGTGTATG+GGG	-	tig0021250:20078-20097	Msa1389200:CDS	30.0%
GATTGTTGTCTTCACATAAT+AGG	+	tig0021250:20207-20226	None:intergenic	30.0%
TAATTTCACCATACGACTAT+TGG	-	tig0021250:20294-20313	Msa1389200:CDS	30.0%
ATTGAAATCCAATAGTCGTA+TGG	+	tig0021250:20305-20324	None:intergenic	30.0%
TAAAGAATAATATGGAGGGA+TGG	+	tig0021250:20347-20366	None:intergenic	30.0%
ATCCCTCCATATTATTCTTT+AGG	-	tig0021250:20346-20365	Msa1389200:CDS	30.0%
AACATAGGTTTCGTCAATAT+AGG	+	tig0021250:20445-20464	None:intergenic	30.0%
TCTTTCTATGTTACTAGCTA+TGG	-	tig0021250:20547-20566	Msa1389200:intron	30.0%
TAGCTATGGTAAATCTCTAT+CGG	-	tig0021250:20561-20580	Msa1389200:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
tig0021250	gene	20034	21772	20034	ID=Msa1389200;Name=Msa1389200
tig0021250	mRNA	20034	21772	20034	ID=Msa1389200-mRNA-1;Parent=Msa1389200;Name=Msa1389200-mRNA-1;_AED=0.03;_eAED=0.03;_QI=0\|1\|0.33\|1\|1\|0.66\|3\|0\|433
tig0021250	exon	20034	20527	20034	ID=Msa1389200-mRNA-1:exon:11509;Parent=Msa1389200-mRNA-1
tig0021250	exon	20835	20888	20835	ID=Msa1389200-mRNA-1:exon:11508;Parent=Msa1389200-mRNA-1
tig0021250	exon	21022	21772	21022	ID=Msa1389200-mRNA-1:exon:11507;Parent=Msa1389200-mRNA-1
tig0021250	CDS	21022	21772	21022	ID=Msa1389200-mRNA-1:cds;Parent=Msa1389200-mRNA-1
tig0021250	CDS	20835	20888	20835	ID=Msa1389200-mRNA-1:cds;Parent=Msa1389200-mRNA-1
tig0021250	CDS	20034	20527	20034	ID=Msa1389200-mRNA-1:cds;Parent=Msa1389200-mRNA-1

Gene Sequence

>Msa1389200

ATGCTTTCCTTAACGTCCTTTGTTATGGTGGCAGCAGTGATACTAATTAGCAACAAAGTGTATGGGGATGAGCAAAAAGAGTCATGTTCAAGAAAGTGTGGTGTTCATAACATCAGCCACCCTTTCAGGCTAAAAGACAGTCCAGAAGAATGTGGTGACAAGAGGTACAACCTATTATGTGAAGACAACAATCAATTGATTTTGTACTATGAATTTGAAGAATACCATGGAAAATACTATGTGCAATCAATTAATTACAATAATTTCACCATACGACTATTGGATTTCAATCTTGCTTCCTCTAATAATTCCATCCCTCCATATTATTCTTTAGGAATCTATAATTTCAGTTCTAACTACATCACCTCCCCCTACCTACTCTATTATCTCGACAAAGACTTCACCGATCCTATATTGACGAAACCTATGTTATATGTGAGCTGTTCAAATCGCATGGAATATTCATACATTGGTAATTGTATGAATAAAACTCCATACTCACAGGATGTAAATTCTTTCTATGTTACTAGCTATGGTAAATCTCTATCGGAATTCGGGCTGGGAGATGGGTGTCGTATACAGTTTATGTATCTCACTTCTTGGGATATTGATGATGACATAAATAACATTTTTTGCTCGGACATCCGTCATATGATGTTTTATGGATTTGAACTTTCTTGGCTCAATGGTCTTTGTAAACATGGTCGGTATGCAGTGCTCGATCAATATAACCAGCCTCATTGTAAATATGATTACTACTGGGATAATGTGGCTTGGACAGTTGAACGTTTATCGACTAAAATAGGTGCATTGGTTGTTTTTCTTAGCGGTGTTAAATTTGTTCTTGGAGCGCCATTGATCATTGTATTATTAATCTACAAATGGCGACGGAAACATCTATCAATGTATGATGGCATCGAAGATTTTCTACGTAGTGACAATAGCATCATCCCTATAAGGTACTCTTACAAAGAGATAAAAAAGATAACCGAACAATTCAAGACAAAACTAGGCAATGGAGGGTATGGATCCGTTTTCAAAGGACAACTTCGAAGTGGTCGTCTTGTAGCAGTCAAATTATTGGACAAAGCCAAGTCCAGTGATCAAGATTTTGTCAATGAAGTTGCTAGCATTGGTAGGATTCACCATGTTAATGTGGTGCAGCTCATTGGTTTTTGTGTGGAAGGTTCAAAACGTGTTCTTATATATGAATTTATGCCAAATGGATCACTCGAAAAATACATATTTTCTCATACCAAAGAGAATTATTCCTTGAGTTGCGAACAACTGTATTCAATT

Protein sequence

>Msa1389200

MLSLTSFVMVAAVILISNKVYGDEQKESCSRKCGVHNISHPFRLKDSPEECGDKRYNLLCEDNNQLILYYEFEEYHGKYYVQSINYNNFTIRLLDFNLASSNNSIPPYYSLGIYNFSSNYITSPYLLYYLDKDFTDPILTKPMLYVSCSNRMEYSYIGNCMNKTPYSQDVNSFYVTSYGKSLSEFGLGDGCRIQFMYLTSWDIDDDINNIFCSDIRHMMFYGFELSWLNGLCKHGRYAVLDQYNQPHCKYDYYWDNVAWTVERLSTKIGALVVFLSGVKFVLGAPLIIVLLIYKWRRKHLSMYDGIEDFLRSDNSIIPIRYSYKEIKKITEQFKTKLGNGGYGSVFKGQLRSGRLVAVKLLDKAKSSDQDFVNEVASIGRIHHVNVVQLIGFCVEGSKRVLIYEFMPNGSLEKYIFSHTKENYSLSCEQLYSI