AlfalfaGEDB | Msa0331380

M. sativa cultivar zhongmu-4 / Msa0331380

KEGG: -
GO: GO:0003674 GO:0003824 GO:0007275 GO:0007568 GO:0008150 GO:0008152 GO:0010150 GO:0016491 GO:0016679 GO:0016682 GO:0032501 GO:0032502 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0055114 GO:0090693 GO:0099402
PFAM: PF14226.9

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0331380	XP_013464486.3	97.183	355	9	1	1	355	1	354	0.0	706

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0331380	sp\|Q39224\|SRG1_ARATH	59.053	359	142	4	1	355	1	358	2.39e-155	443

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0051960	Msa0331380	0.807819	4.195733e-50	-8.615850e-47
Msa0101960	Msa0331380	0.808880	2.491766e-50	-8.615850e-47
Msa0254140	Msa0331380	0.843643	1.235351e-58	-8.615850e-47
Msa0331380	Msa0545050	0.830391	3.015665e-55	-8.615850e-47
Msa0331380	Msa0574930	0.809227	2.099480e-50	-8.615850e-47
Msa0331380	Msa0600590	0.818645	1.759705e-52	-8.615850e-47
Msa0331380	Msa0641130	0.829638	4.602808e-55	-8.615850e-47
Msa0331380	Msa0698450	0.806279	8.885126e-50	-8.615850e-47
Msa0331380	Msa0698460	0.807499	4.906652e-50	-8.615850e-47
Msa0331380	Msa1031460	0.815404	9.406462e-52	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0331380	MtrunA17_Chr2g0314401	97.183	355	9	1	1	355	1	354	0.0	706
Msa0331380	MtrunA17_Chr2g0314391	80.282	355	69	1	1	355	20	373	0.0	600
Msa0331380	MtrunA17_Chr2g0314381	72.472	356	96	2	1	355	26	380	0.0	546
Msa0331380	MtrunA17_Chr2g0314371	73.926	326	59	4	1	303	1	323	2.43e-171	480
Msa0331380	MtrunA17_Chr8g0375671	59.429	350	139	2	8	355	9	357	2.61e-154	438
Msa0331380	MtrunA17_Chr8g0365241	59.078	347	140	2	9	355	15	359	2.39e-153	435
Msa0331380	MtrunA17_Chr5g0420951	58.621	348	141	3	9	355	10	355	2.24e-151	430
Msa0331380	MtrunA17_Chr5g0420981	57.062	354	149	3	3	355	4	355	8.22e-150	426
Msa0331380	MtrunA17_Chr5g0421041	57.349	347	143	3	9	355	5	346	1.34e-147	420
Msa0331380	MtrunA17_Chr8g0375571	56.034	348	150	2	10	355	4	350	1.14e-145	416

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0331380	AT1G17020.1	59.053	359	142	4	1	355	1	358	2.43e-156	443
Msa0331380	AT1G17010.1	54.875	359	157	4	1	355	1	358	1.84e-143	410
Msa0331380	AT4G25300.1	54.213	356	159	4	3	355	2	356	3.77e-139	399
Msa0331380	AT4G25310.1	53.911	358	154	6	3	355	2	353	1.85e-132	382
Msa0331380	AT1G78550.1	51.821	357	169	3	1	355	1	356	7.86e-132	381
Msa0331380	AT1G78550.2	53.025	281	128	1	75	355	2	278	2.49e-109	321
Msa0331380	AT4G25310.2	48.459	357	147	6	3	355	2	325	1.55e-108	320
Msa0331380	AT3G21420.1	41.329	346	195	4	18	355	17	362	5.57e-94	285
Msa0331380	AT2G38240.1	39.942	343	196	4	17	353	11	349	2.95e-87	267
Msa0331380	AT5G05600.1	36.873	339	209	3	18	351	27	365	4.93e-78	244

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Find 86 sgRNAs with CRISPR-Local

Find 182 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACACCAGCACGGTTCAAA+AGG	0.445841	2_4:-47069399	Msa0331380:CDS
AAATTGCTTTCTTTAGAATA+TGG	0.243620	2_4:-47071787	Msa0331380:CDS
AACAATGAAGGCATTAGGCA+GGG	0.538683	2_4:+47069842	None:intergenic
AAGATGGTGTCCAATCAATG+AGG	0.755431	2_4:-47070013	Msa0331380:CDS
AAGTAAGGAAAGATGGCATG+TGG	0.601365	2_4:-47069878	Msa0331380:CDS
AATAGTTCATCCTCATTGAT+TGG	0.344147	2_4:+47070003	None:intergenic
AATGCCTTCATTGTTAACAT+TGG	0.470273	2_4:-47069834	Msa0331380:CDS
AATTGCTTTCTTTAGAATAT+GGG	0.377850	2_4:-47071786	Msa0331380:CDS
AATTTCTTCATATCAATAAC+TGG	0.376735	2_4:+47071805	None:intergenic
ACAATGAAGGCATTAGGCAG+GGG	0.577553	2_4:+47069843	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
CGTCTCATTTAATAATGAGA+GGG	+	chr2_4:47069209-47069228	None:intergenic	30.0%
ACGTCTCATTTAATAATGAG+AGG	+	chr2_4:47069210-47069229	None:intergenic	30.0%
TGATGAACAAAAGCTTGATT+GGG	-	chr2_4:47069790-47069809	Msa0331380:intron	30.0%
AGTAATAATGACTGAATAGC+GGG	-	chr2_4:47069996-47070015	Msa0331380:CDS	30.0%
TGTAATTCAAGCATCTTTGA+GGG	+	chr2_4:47070191-47070210	None:intergenic	30.0%
TTCAAGCATCTTATAAAGGA+TGG	-	chr2_4:47070603-47070622	Msa0331380:intron	30.0%
TCAAGCATCTTATAAAGGAT+GGG	-	chr2_4:47070604-47070623	Msa0331380:intron	30.0%
CGAACTAAAAAAGTTATCCA+TGG	-	chr2_4:47071144-47071163	Msa0331380:intron	30.0%
CATATAGTCAACAATAACCA+TGG	+	chr2_4:47071164-47071183	None:intergenic	30.0%
AATAGTTCATCCTCATTGAT+TGG	+	chr2_4:47071243-47071262	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2_4	gene	47069103	47072162	47069103	ID=Msa0331380;Name=Msa0331380
chr2_4	mRNA	47069103	47072162	47069103	ID=Msa0331380-mRNA-1;Parent=Msa0331380;Name=Msa0331380-mRNA-1;_AED=0.06;_eAED=0.06;_QI=111\|1\|1\|1\|0.75\|0.6\|5\|215\|355
chr2_4	exon	47069103	47069560	47069103	ID=Msa0331380-mRNA-1:exon:14211;Parent=Msa0331380-mRNA-1
chr2_4	exon	47069821	47070145	47069821	ID=Msa0331380-mRNA-1:exon:14210;Parent=Msa0331380-mRNA-1
chr2_4	exon	47071374	47071621	47071374	ID=Msa0331380-mRNA-1:exon:14209;Parent=Msa0331380-mRNA-1
chr2_4	exon	47071732	47072025	47071732	ID=Msa0331380-mRNA-1:exon:14208;Parent=Msa0331380-mRNA-1
chr2_4	exon	47072094	47072162	47072094	ID=Msa0331380-mRNA-1:exon:14207;Parent=Msa0331380-mRNA-1
chr2_4	five_prime_UTR	47072094	47072162	47072094	ID=Msa0331380-mRNA-1:five_prime_utr;Parent=Msa0331380-mRNA-1
chr2_4	five_prime_UTR	47071984	47072025	47071984	ID=Msa0331380-mRNA-1:five_prime_utr;Parent=Msa0331380-mRNA-1
chr2_4	CDS	47071732	47071983	47071732	ID=Msa0331380-mRNA-1:cds;Parent=Msa0331380-mRNA-1
chr2_4	CDS	47071374	47071621	47071374	ID=Msa0331380-mRNA-1:cds;Parent=Msa0331380-mRNA-1
chr2_4	CDS	47069821	47070145	47069821	ID=Msa0331380-mRNA-1:cds;Parent=Msa0331380-mRNA-1
chr2_4	CDS	47069318	47069560	47069318	ID=Msa0331380-mRNA-1:cds;Parent=Msa0331380-mRNA-1
chr2_4	three_prime_UTR	47069103	47069317	47069103	ID=Msa0331380-mRNA-1:three_prime_utr;Parent=Msa0331380-mRNA-1

Gene Sequence

>Msa0331380

ATGGAAGAGATCAAGAACCCATCTGGAACTTCTCTTCTGGTACCATCATCAGTTCAAGAATTGGCTAAGGAAAAGATTTCAACAGTTCCAGCAAGATATATTCAGTCTCAACATGATGAATTGGTCATCAATGAAGCTAATAGTATACTTGAAATTCCAGTTATTGATATGAAGAAATTGCTTTCTTTAGAATATGGGAGTTCAGAATTGTCTAAGCTTCACCTTGCTTGCAAAGATTGGGGATTCTTTCAGCTGGTAAATCATGATGTAAGTTCTTCCTTGGTGGAGAAAGTAAAGTTGGAGACTCAAGATTTCTTCAACCTTCCAATGTCAGAGAAGAAAAAGTTTTGGCAAACTTCCCAACATATGGAGGGATTTGGACAAGCATTTGTTGTGAGTGATGAACAAAAGCTTGATTGGGCAGATATTTTCTTTATGACTACCCTTCCTAAACGCTCTAGAATGTCTCACTTGTTTCCACAACTTCCTCTTTCTATCAGAGATACTTTTGAGCTTTACTCAACCGAACTAAAAAAGTTATCCATGGTTATTGTTGACTATATGGGAGAAGCTTTGAAAATGGATGAAAAAGAAATGAGGATGTTTTTTGAAGATGGTGTCCAATCAATGAGGATGAACTATTACCCTCCTTGTCCACAACCAGAAAAGGTTATTGGCCTAACACCCCATTCAGATGGATCAGCACTCACTATCCTTCTACAACTCAATGATGTAGAAGGGCTCCAAGTAAGGAAAGATGGCATGTGGGTTCCTGTTAAACCCCTGCCTAATGCCTTCATTGTTAACATTGGGGACATTCTTGAGGTTATAACTAACGGAATATATCGAAGTATCGAGCATCGAGCAATTGTAAACTCTGAAAAAGAAAGAATGTCAATTGCAACATTCTATACTTCAAGACATGATGGAGAGATGGCTCCTGCAAATAGCTTGATCACTGAAGAAACACCAGCACGGTTCAAAAGGATTGGACTAAAAGAATTCTTGAGGAGTATGTTTGCTCGTAAACTTGATGGCAAGTCTTTCCTAGATGAACTGAGGATATAG

Protein sequence

>Msa0331380

MEEIKNPSGTSLLVPSSVQELAKEKISTVPARYIQSQHDELVINEANSILEIPVIDMKKLLSLEYGSSELSKLHLACKDWGFFQLVNHDVSSSLVEKVKLETQDFFNLPMSEKKKFWQTSQHMEGFGQAFVVSDEQKLDWADIFFMTTLPKRSRMSHLFPQLPLSIRDTFELYSTELKKLSMVIVDYMGEALKMDEKEMRMFFEDGVQSMRMNYYPPCPQPEKVIGLTPHSDGSALTILLQLNDVEGLQVRKDGMWVPVKPLPNAFIVNIGDILEVITNGIYRSIEHRAIVNSEKERMSIATFYTSRHDGEMAPANSLITEETPARFKRIGLKEFLRSMFARKLDGKSFLDELRI*