AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0339070

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0339070 MtrunA17_Chr2g0327291 94.706 510 10 2 1 510 7 499 0.0 987
Msa0339070 MtrunA17_Chr2g0327291 25.738 237 135 6 72 299 370 574 2.04e-11 66.6
Msa0339070 MtrunA17_Chr4g0028471 86.624 471 51 1 34 504 35 493 0.0 861
Msa0339070 MtrunA17_Chr3g0119921 42.953 447 230 6 77 502 177 619 2.12e-120 369
Msa0339070 MtrunA17_Chr7g0220881 38.913 460 241 7 77 502 156 609 2.71e-109 341
Msa0339070 MtrunA17_Chr1g0181461 40.263 457 239 9 77 502 2 455 3.11e-109 336
Msa0339070 MtrunA17_Chr8g0371361 39.474 456 242 6 77 502 156 607 3.22e-108 338
Msa0339070 MtrunA17_Chr3g0129301 31.084 415 262 8 76 470 107 517 5.59e-49 179
Msa0339070 MtrunA17_Chr3g0129301 26.531 245 147 4 77 317 435 650 2.16e-19 91.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0339070 AT5G60790.1 81.211 479 78 1 32 510 38 504 0.0 824
Msa0339070 AT5G60790.1 26.877 253 141 8 72 312 375 595 1.50e-11 67.4
Msa0339070 AT1G64550.1 43.080 448 229 6 77 502 177 620 6.06e-120 369
Msa0339070 AT3G54540.2 41.957 460 226 9 77 502 165 617 1.97e-117 362
Msa0339070 AT3G54540.1 41.957 460 226 9 77 502 165 617 1.97e-117 362
Msa0339070 AT5G64840.1 31.884 414 260 7 76 470 99 509 2.84e-53 191
Msa0339070 AT5G64840.1 27.586 232 137 5 77 305 427 630 2.18e-17 85.9
Msa0339070 AT5G09930.1 30.184 434 279 8 77 490 86 515 2.19e-50 183
Msa0339070 AT5G09930.1 24.268 239 136 4 77 305 413 616 3.37e-15 79.0

Find 172 sgRNAs with CRISPR-Local

Find 316 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CACTCCCAAGATTTCCTTAA+TGG 0.133001 2_4:+59985595 Msa0339070:CDS
ATTTATGATGCTTATCAATT+TGG 0.178671 2_4:+59986788 Msa0339070:three_prime_UTR
AGGTCATAATCGTGACATTT+TGG 0.184738 2_4:-59986608 None:intergenic
GAAGAAATTTGACCGTATTT+TGG 0.193189 2_4:+59985561 Msa0339070:CDS
ATCCTTTCTTCCTCATTTCC+AGG 0.254068 2_4:-59986207 None:intergenic
CGCCACCGCTTCATCGAAAA+AGG 0.264820 2_4:+59982743 Msa0339070:CDS
TCTGAGTTGGAGCTAAATTA+TGG 0.275758 2_4:+59984163 Msa0339070:CDS
TCCTCTCTCTAGGGATATTC+AGG 0.283104 2_4:+59982854 Msa0339070:CDS
AGAGCAGCTATTGGGAAGTT+TGG 0.294434 2_4:+59986231 Msa0339070:CDS
GGAGAAAGAAGCTGAAATTC+TGG 0.295585 2_4:+59984477 Msa0339070:CDS
CCCACCTGTTCTCCAGTTTG+TGG 0.300584 2_4:+59985924 Msa0339070:CDS
TGACGAGGAAAGGTTGAAAT+TGG 0.301469 2_4:+59984456 Msa0339070:CDS
AAGGAATACATTGCACGATT+TGG 0.328195 2_4:+59985763 Msa0339070:CDS
GATAGTGTTGCTAACGGAAT+TGG 0.333903 2_4:+59982783 Msa0339070:CDS
ATCAGGTGGCCCATGAGATA+TGG 0.335843 2_4:+59986464 Msa0339070:three_prime_UTR
GGTGATTTGGTTCCTTTAGA+TGG 0.339333 2_4:+59986078 Msa0339070:CDS
GAAGCTTATGACAGGTGATT+TGG 0.339539 2_4:+59986065 Msa0339070:CDS
CCAACATGATACATTGATAA+TGG 0.340708 2_4:+59986826 Msa0339070:three_prime_UTR
TTCTTGTAGATGAGATTATC+AGG 0.347827 2_4:-59985967 None:intergenic
CAGATGGGAAGGTGATATTA+TGG 0.351979 2_4:+59986510 Msa0339070:three_prime_UTR
TATTTGTGCAGACACCATTA+AGG 0.358821 2_4:-59985609 None:intergenic
CAGTTTGTGGAGGTGACATT+TGG 0.361508 2_4:+59985937 Msa0339070:CDS
GAATGGTTGGGTTCATAAAC+AGG 0.363149 2_4:-59984781 None:intergenic
CGTGCTCTTCCCAGCTCCAT+TGG 0.366938 2_4:-59986037 None:intergenic
TGTTCAGACACGTGCTGAAC+TGG 0.372673 2_4:+59985687 Msa0339070:CDS
AGGTGATGCCTATGAGAAAT+TGG 0.373453 2_4:+59986271 Msa0339070:CDS
TGCTTATCAATTTGGTTGCT+TGG 0.375022 2_4:+59986796 Msa0339070:three_prime_UTR
GGGATACCAAGGTGATTTGT+AGG 0.378062 2_4:-59984818 None:intergenic
ATGGGATGGTGGCATGGTTC+TGG 0.379571 2_4:+59986417 Msa0339070:three_prime_UTR
CTCTGACATGTCTGCGTTGG+AGG 0.384118 2_4:+59984420 Msa0339070:CDS
GTGCAATGCGAAGGTGATTA+TGG 0.388699 2_4:-59986113 None:intergenic
TTTGTTCCCATCCTCTCTCT+AGG 0.391658 2_4:+59982844 Msa0339070:CDS
TCCTTTGTCCAATTTCTCAT+AGG 0.392223 2_4:-59986279 None:intergenic
ATAGTGTTGCTAACGGAATT+GGG 0.394864 2_4:+59982784 Msa0339070:CDS
TGTCAGAGGCTTCAATTTCC+CGG 0.399457 2_4:-59984405 None:intergenic
TCGATATCTAAATGATTAGT+TGG 0.399920 2_4:-59986361 None:intergenic
ATTGTAGTACTTGTTTCCTC+TGG 0.408831 2_4:+59986886 Msa0339070:three_prime_UTR
GAAAGGATGAGAGCAGCTAT+TGG 0.409176 2_4:+59986222 Msa0339070:CDS
TCTACGCTACTTACAGCAAT+AGG 0.411200 2_4:+59984334 Msa0339070:CDS
GTGAATATAATCAAATGAAA+TGG 0.414753 2_4:+59986685 Msa0339070:three_prime_UTR
CTGGTTGGACCCAATGGAGC+TGG 0.414943 2_4:+59986027 Msa0339070:CDS
TCTACAAGAACATTGACTTC+GGG 0.415122 2_4:+59985980 Msa0339070:CDS
ACCTCCACAAACTGGAGAAC+AGG 0.416071 2_4:-59985928 None:intergenic
TTCAGACGTTATGGTTTGCT+TGG 0.417788 2_4:+59984292 Msa0339070:intron
CATAATATCACCTTCCCATC+TGG 0.420837 2_4:-59986509 None:intergenic
ATATCCATGTGGTCTGGAAT+AGG 0.420995 2_4:-59984370 None:intergenic
AGACACCATTAAGGAAATCT+TGG 0.427382 2_4:-59985600 None:intergenic
TGGATATTTATCACCTTAGC+CGG 0.433721 2_4:+59984386 Msa0339070:CDS
CCCACCTGTACTGCTTCATC+TGG 0.435159 2_4:-59985717 None:intergenic
AATCACCTGTCATAAGCTTC+AGG 0.435857 2_4:-59986062 None:intergenic
ATTGGGAAGTTTGGATTGTC+GGG 0.439397 2_4:+59986240 Msa0339070:CDS
GGGTCCAACCAGAGCAATCC+TGG 0.440264 2_4:-59986016 None:intergenic
ATGACCTTGTATTACAATGT+AGG 0.448368 2_4:+59986624 Msa0339070:three_prime_UTR
TCTTTATCAGTTACTTTCCA+TGG 0.449572 2_4:+59984121 Msa0339070:CDS
TCCTTTCTTCCTCATTTCCA+GGG 0.450321 2_4:-59986206 None:intergenic
GACTCCAGGATTGCTCTGGT+TGG 0.450992 2_4:+59986012 Msa0339070:CDS
CAAATGTCACCTCCACAAAC+TGG 0.453285 2_4:-59985936 None:intergenic
CTTGAGGTGGATTTCTCTCA+TGG 0.456181 2_4:+59986663 Msa0339070:three_prime_UTR
GGATTTCAAGCTGCACCTAA+AGG 0.456483 2_4:+59986531 Msa0339070:three_prime_UTR
TATTGGGAAGTTTGGATTGT+CGG 0.456601 2_4:+59986239 Msa0339070:CDS
TAGCCGAGGCATTGAATGAA+TGG 0.457369 2_4:+59986398 Msa0339070:three_prime_UTR
AAAGGATGAGAGCAGCTATT+GGG 0.460692 2_4:+59986223 Msa0339070:CDS
TTTCTGGTGGATGGAGAATG+AGG 0.462028 2_4:+59984741 Msa0339070:CDS
CAGCAAGTGAGGCTGTCTAT+AGG 0.465288 2_4:-59986326 None:intergenic
ACCCTGGAAATGAGGAAGAA+AGG 0.466407 2_4:+59986205 Msa0339070:CDS
GTGCTCTTCCCAGCTCCATT+GGG 0.466440 2_4:-59986036 None:intergenic
TTGTTCCCATCCTCTCTCTA+GGG 0.473216 2_4:+59982845 Msa0339070:CDS
GAGAAAGAAGCTGAAATTCT+GGG 0.473580 2_4:+59984478 Msa0339070:CDS
TTTGGTTCCTTTAGATGGCA+TGG 0.476128 2_4:+59986083 Msa0339070:CDS
TCAGGTGGCCCATGAGATAT+GGG 0.476686 2_4:+59986465 Msa0339070:three_prime_UTR
AGGCTTCAATTTCCCGGCTA+AGG 0.478428 2_4:-59984399 None:intergenic
TGATAAATATCCATGTGGTC+TGG 0.478691 2_4:-59984376 None:intergenic
TCTTCTCTTTACTCTGAGCT+TGG 0.478713 2_4:-59985810 None:intergenic
AGCTGAAATTCTGGGAGCAC+AGG 0.481031 2_4:+59984486 Msa0339070:CDS
TTTAGACTCCAGGATTGCTC+TGG 0.486928 2_4:+59986008 Msa0339070:CDS
GAATATCCCTAGAGAGAGGA+TGG 0.495874 2_4:-59982851 None:intergenic
CAAGCTGCACCTAAAGGAAA+AGG 0.496432 2_4:+59986537 Msa0339070:three_prime_UTR
TCGGGGTCGATTTAGACTCC+AGG 0.496794 2_4:+59985998 Msa0339070:CDS
TTTGGAAGCATGTGTGTGGC+TGG 0.497037 2_4:+59985528 Msa0339070:CDS
TGGTTTCAACAAGCAGATGC+AGG 0.504046 2_4:+59984700 Msa0339070:CDS
AGAACCAGATGAAGCAGTAC+AGG 0.507231 2_4:+59985713 Msa0339070:CDS
TTGCTTGGATTGAACGGCTG+TGG 0.511780 2_4:+59984307 Msa0339070:CDS
ATTGCTCTGGTTGGACCCAA+TGG 0.513877 2_4:+59986021 Msa0339070:CDS
TCATTAGTTGTGACGAGGAA+AGG 0.515894 2_4:+59984446 Msa0339070:CDS
CGACGAACCATGCCATCTAA+AGG 0.517489 2_4:-59986090 None:intergenic
GTGAAATCACAACCAAAATA+CGG 0.518081 2_4:-59985573 None:intergenic
AGGTTCATCAAGTAGAAGAA+TGG 0.518332 2_4:-59984798 None:intergenic
GACACCATTAAGGAAATCTT+GGG 0.522650 2_4:-59985599 None:intergenic
TCTAATAGTTGATTCTGAGT+TGG 0.522759 2_4:+59984150 Msa0339070:CDS
CCCTCCTCTCTTTGCAGCGG+CGG 0.522773 2_4:-59982712 None:intergenic
ATCCCATTCATTCAATGCCT+CGG 0.523753 2_4:-59986401 None:intergenic
GAAATATTACCTACCTCTGA+AGG 0.526085 2_4:-59983978 None:intergenic
GAAGCAGTACAGGTGGGAGC+AGG 0.526521 2_4:+59985723 Msa0339070:CDS
TGGATTGTCGGGTAAAGCAC+AGG 0.529724 2_4:+59986251 Msa0339070:CDS
AGCCGAGGCATTGAATGAAT+GGG 0.531518 2_4:+59986399 Msa0339070:three_prime_UTR
TTATTTATGTTCCAGGAGGA+TGG 0.532051 2_4:+59984584 Msa0339070:intron
TCATCAAGTAGAAGAATGGT+TGG 0.533303 2_4:-59984794 None:intergenic
GCGGGTTTATCTGACTGAAA+AGG 0.536897 2_4:+59986559 Msa0339070:three_prime_UTR
CAGCACACACCCATATCTCA+TGG 0.540856 2_4:-59986474 None:intergenic
GCCGCCGCTGCAAAGAGAGG+AGG 0.541617 2_4:+59982711 Msa0339070:CDS
ATCTACAAGAACATTGACTT+CGG 0.541734 2_4:+59985979 Msa0339070:CDS
AACAAATATTACAGAGGTGA+CGG 0.543594 2_4:-59986758 None:intergenic
AGCCTCTGACATGTCTGCGT+TGG 0.547223 2_4:+59984417 Msa0339070:CDS
CAACTATTAGATCATGTCCA+TGG 0.547850 2_4:-59984138 None:intergenic
AAAAGAGTACCCTGGAAATG+AGG 0.547885 2_4:+59986197 Msa0339070:CDS
TATGGTTTGCTTGGATTGAA+CGG 0.549563 2_4:+59984301 Msa0339070:CDS
ACCTGTTCTCCAGTTTGTGG+AGG 0.551730 2_4:+59985927 Msa0339070:CDS
CATCAAGTAGAAGAATGGTT+GGG 0.553770 2_4:-59984793 None:intergenic
GCTGCCGCCGCTGCAAAGAG+AGG 0.556803 2_4:+59982708 Msa0339070:CDS
ATATCTGATCGGACATGCAC+GGG 0.557255 2_4:+59982816 Msa0339070:CDS
GGAGCAGATTGCCTCAATGA+AGG 0.557274 2_4:+59985744 Msa0339070:CDS
TGGTTGGACCCAATGGAGCT+GGG 0.558985 2_4:+59986028 Msa0339070:CDS
TGCAATGTATTCCTTCATTG+AGG 0.559633 2_4:-59985755 None:intergenic
CCATTATCAATGTATCATGT+TGG 0.560306 2_4:-59986826 None:intergenic
GTGTTGCTAGCTGCTTGAGG+TGG 0.560811 2_4:+59986650 Msa0339070:three_prime_UTR
CCAACCTACATTGTAATACA+AGG 0.560880 2_4:-59986628 None:intergenic
CCGCCGCTGCAAAGAGAGGA+GGG 0.562371 2_4:+59982712 Msa0339070:CDS
AAAGGCGTCGGAGAAGGCGG+TGG 0.562809 2_4:+59982761 Msa0339070:CDS
AGTTGGAGCTAAATTATGGA+AGG 0.564374 2_4:+59984167 Msa0339070:CDS
ACCAGATGAAGCAGTACAGG+TGG 0.568916 2_4:+59985716 Msa0339070:CDS
ACGTTCCTGAAGCTTATGAC+AGG 0.572055 2_4:+59986057 Msa0339070:CDS
CGCTGCAAAGAGAGGAGGGA+AGG 0.574075 2_4:+59982716 Msa0339070:CDS
CTGATCAAACAGTGACCAGA+TGG 0.574106 2_4:+59986494 Msa0339070:three_prime_UTR
GGATATTTATCACCTTAGCC+GGG 0.580006 2_4:+59984387 Msa0339070:CDS
GATATCTGATCGGACATGCA+CGG 0.582650 2_4:+59982815 Msa0339070:CDS
CACAAACTGGAGAACAGGTG+GGG 0.584349 2_4:-59985923 None:intergenic
TCCACAAACTGGAGAACAGG+TGG 0.586563 2_4:-59985925 None:intergenic
ATGTTCCAGGAGGATGGTGG+TGG 0.591374 2_4:+59984590 Msa0339070:intron
TACATTGCACGATTTGGCCA+TGG 0.600697 2_4:+59985769 Msa0339070:CDS
TTTATGTTCCAGGAGGATGG+TGG 0.602285 2_4:+59984587 Msa0339070:intron
TCTGTTTATGAATCCTTCAG+AGG 0.604197 2_4:+59983965 Msa0339070:CDS
CCACAAACTGGAGAACAGGT+GGG 0.611917 2_4:-59985924 None:intergenic
GAATGAATGGGATGGTGGCA+TGG 0.612616 2_4:+59986411 Msa0339070:three_prime_UTR
CTGCACCTAAAGGAAAAGGC+GGG 0.612988 2_4:+59986541 Msa0339070:three_prime_UTR
CCTTGTATTACAATGTAGGT+TGG 0.614457 2_4:+59986628 Msa0339070:three_prime_UTR
TCATCTAATAGCAGCAAGTG+AGG 0.614956 2_4:-59986337 None:intergenic
GCGCGGTGGACTTACAGAGA+AGG 0.616834 2_4:+59985849 Msa0339070:CDS
TAGATTTGGAAGCATGTGTG+TGG 0.617264 2_4:+59985524 Msa0339070:intron
TAGTGTTGCTAACGGAATTG+GGG 0.617899 2_4:+59982785 Msa0339070:CDS
ATAAAGAGTAAAGGAGCCAG+AGG 0.619651 2_4:-59986902 None:intergenic
GAATCAGACATAGAAATCAC+CGG 0.620043 2_4:+59986709 Msa0339070:three_prime_UTR
TTGGTGTTGCTAGCTGCTTG+AGG 0.622629 2_4:+59986647 Msa0339070:three_prime_UTR
GCTTCCTATTCCAGACCACA+TGG 0.623990 2_4:+59984366 Msa0339070:CDS
GCTGCACCTAAAGGAAAAGG+CGG 0.625202 2_4:+59986540 Msa0339070:three_prime_UTR
ACAAACTGGAGAACAGGTGG+GGG 0.628419 2_4:-59985922 None:intergenic
AGCACACACCCATATCTCAT+GGG 0.630239 2_4:-59986473 None:intergenic
CAAACAGTGACCAGATGGGA+AGG 0.631024 2_4:+59986499 Msa0339070:three_prime_UTR
AATATCCCTAGAGAGAGGAT+GGG 0.632152 2_4:-59982850 None:intergenic
GACAATTGACTCGTTAGCCG+AGG 0.636847 2_4:+59986384 Msa0339070:three_prime_UTR
CGGTGGACTTACAGAGAAGG+TGG 0.640373 2_4:+59985852 Msa0339070:CDS
GGGATATTCAGATATCTGAT+CGG 0.640506 2_4:+59982805 Msa0339070:CDS
GATGAACCTACAAATCACCT+TGG 0.641091 2_4:+59984812 Msa0339070:CDS
GGAGTCGCGTGATCTTTGCA+TGG 0.644084 2_4:+59986299 Msa0339070:CDS
GCCTATGAGAAATTGGACAA+AGG 0.644850 2_4:+59986278 Msa0339070:CDS
GGTGAAATTGTGCAATGCGA+AGG 0.646343 2_4:-59986122 None:intergenic
TGATCAAACAGTGACCAGAT+GGG 0.653848 2_4:+59986495 Msa0339070:three_prime_UTR
CTACAAGAACATTGACTTCG+GGG 0.653950 2_4:+59985981 Msa0339070:CDS
CTTCCCTCCTCTCTTTGCAG+CGG 0.655854 2_4:-59982715 None:intergenic
ACCTGAATATCCCTAGAGAG+AGG 0.657445 2_4:-59982855 None:intergenic
GGCTGTCATTAGTTGTGACG+AGG 0.658773 2_4:+59984441 Msa0339070:CDS
CCAGATGAAGCAGTACAGGT+GGG 0.659061 2_4:+59985717 Msa0339070:CDS
GCGGTGGATAGTGTTGCTAA+CGG 0.662681 2_4:+59982777 Msa0339070:CDS
AAGGCAGCGTCTGTGATGCG+CGG 0.666375 2_4:+59986578 Msa0339070:three_prime_UTR
CTCCAACGCAGACATGTCAG+AGG 0.671580 2_4:-59984419 None:intergenic
GCATTGAATGAATGGGATGG+TGG 0.687430 2_4:+59986406 Msa0339070:three_prime_UTR
TTTATGATAAAAGAGTACCC+TGG 0.697631 2_4:+59986189 Msa0339070:CDS
GAGGCATTGAATGAATGGGA+TGG 0.699572 2_4:+59986403 Msa0339070:three_prime_UTR
GGAAGCATGTGTGTGGCTGG+AGG 0.706083 2_4:+59985531 Msa0339070:CDS
AATGGTTGGGTTCATAAACA+GGG 0.707136 2_4:-59984780 None:intergenic
TAAGGTGATAAATATCCATG+TGG 0.717137 2_4:-59984381 None:intergenic
GGTCTGGAATAGGAAGCTCA+CGG 0.726335 2_4:-59984360 None:intergenic
GTTTCCCCACATCAACAAAG+CGG 0.731629 2_4:-59985897 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AGATTTAATTAATTGTTATT+CGG + chr2_4:59982925-59982944 Msa0339070:intron 10.0%
!! ATAATAAATATTTGTAGATT+TGG + chr2_4:59985510-59985529 Msa0339070:intron 10.0%
!!! GTTATTGATTAGTTTAATTT+TGG + chr2_4:59982895-59982914 Msa0339070:intron 15.0%
!!! AAAAAAACTAACACAATTTT+TGG - chr2_4:59983166-59983185 None:intergenic 15.0%
!!! GACTTTTATTAACAAAATTA+CGG + chr2_4:59983231-59983250 Msa0339070:intron 15.0%
!!! ACTTTTATTAACAAAATTAC+GGG + chr2_4:59983232-59983251 Msa0339070:intron 15.0%
!!! TCAAAATCAATTTTTGTATT+AGG + chr2_4:59983599-59983618 Msa0339070:intron 15.0%
!! TAATAATTAATTGAGAATCT+GGG - chr2_4:59983784-59983803 None:intergenic 15.0%
!! TTAATAATTAATTGAGAATC+TGG - chr2_4:59983785-59983804 None:intergenic 15.0%
!!! AATTATTAATCCCATATTTT+CGG + chr2_4:59983796-59983815 Msa0339070:intron 15.0%
!! TTCAATATTGAACAATAAAA+AGG + chr2_4:59983998-59984017 Msa0339070:intron 15.0%
!! GACAATTAAATGTATTTATA+TGG - chr2_4:59984033-59984052 None:intergenic 15.0%
!! TTTCTTACTATAATATTTGT+TGG + chr2_4:59984245-59984264 Msa0339070:intron 15.0%
!!! TACATTAACATCTAATTTTA+TGG + chr2_4:59985263-59985282 Msa0339070:intron 15.0%
!! ATTAAAAACAAATATTACAG+AGG - chr2_4:59986767-59986786 None:intergenic 15.0%
!! TTTGTTCTTTATGTTATGTA+TGG + chr2_4:59982965-59982984 Msa0339070:intron 20.0%
!!! GCTTTTTTTTTTTTTTGGAA+TGG - chr2_4:59983356-59983375 None:intergenic 20.0%
!!! GAGAAGCTTTTTTTTTTTTT+TGG - chr2_4:59983361-59983380 None:intergenic 20.0%
!!! AAAAAAAAGCTTCTCTTTTA+AGG + chr2_4:59983366-59983385 Msa0339070:intron 20.0%
!!! ACACTTCAAATTATTTTTCA+TGG - chr2_4:59983574-59983593 None:intergenic 20.0%
!! AGAATTATGTTGAAATTTGA+AGG - chr2_4:59983664-59983683 None:intergenic 20.0%
!!! TTTTTCAATTGAAAATGATC+TGG + chr2_4:59983692-59983711 Msa0339070:intron 20.0%
!! TAAGTCAGAAGATATAAATA+TGG - chr2_4:59984208-59984227 None:intergenic 20.0%
!! GAACATAAATAAATAAAGTG+TGG - chr2_4:59984576-59984595 None:intergenic 20.0%
!!! ACTTTATTTATTTATGTTCC+AGG + chr2_4:59984577-59984596 Msa0339070:intron 20.0%
!!! ATTAACATCTAATTTTATGG+AGG + chr2_4:59985266-59985285 Msa0339070:intron 20.0%
!! GTGAATATAATCAAATGAAA+TGG + chr2_4:59986685-59986704 Msa0339070:three_prime_UTR 20.0%
!! ATTTATGATGCTTATCAATT+TGG + chr2_4:59986788-59986807 Msa0339070:three_prime_UTR 20.0%
! TCTATGACTTGAGTTTATAA+AGG - chr2_4:59983213-59983232 None:intergenic 25.0%
!! ACTGTTTTCATAATCTATTC+TGG + chr2_4:59983394-59983413 Msa0339070:intron 25.0%
! CAGTCATAATAATCAGAATT+AGG - chr2_4:59983543-59983562 None:intergenic 25.0%
! TTTCAACATAATTCTTGTCT+TGG + chr2_4:59983669-59983688 Msa0339070:intron 25.0%
!!! ATAAACAGAGATTTTGACAT+GGG - chr2_4:59983954-59983973 None:intergenic 25.0%
!! GTTGTATTCTATTGACATTT+TGG + chr2_4:59984074-59984093 Msa0339070:intron 25.0%
! ATATCTTCTGACTTATGAAT+AGG + chr2_4:59984213-59984232 Msa0339070:intron 25.0%
!!! TAACTTATTTTCAGACGTTA+TGG + chr2_4:59984283-59984302 Msa0339070:intron 25.0%
! TTATTTATTTATGTTCCAGG+AGG + chr2_4:59984580-59984599 Msa0339070:intron 25.0%
!! AATGAAAGAGTTACTCTTTT+CGG - chr2_4:59984850-59984869 None:intergenic 25.0%
!!! TTTTTTAATTGAAGGTCACA+TGG + chr2_4:59984952-59984971 Msa0339070:intron 25.0%
!!! TTTTTAATTGAAGGTCACAT+GGG + chr2_4:59984953-59984972 Msa0339070:intron 25.0%
! GTATGCTTTGATAAAACATT+TGG + chr2_4:59985098-59985117 Msa0339070:intron 25.0%
!! AAAGCATCATCATAACTAAA+AGG - chr2_4:59985349-59985368 None:intergenic 25.0%
! TCAGACTAAATTCAATGTAT+TGG + chr2_4:59985368-59985387 Msa0339070:intron 25.0%
! AAAACATTGCAAGATATGAA+GGG - chr2_4:59985406-59985425 None:intergenic 25.0%
! AAAAACATTGCAAGATATGA+AGG - chr2_4:59985407-59985426 None:intergenic 25.0%
! TCGATATCTAAATGATTAGT+TGG - chr2_4:59986364-59986383 None:intergenic 25.0%
! AGCTCAAAAAATAATTAAGC+CGG - chr2_4:59986731-59986750 None:intergenic 25.0%
!! TGGATGATTAGTTCTTTTGT+AGG + chr2_4:59982985-59983004 Msa0339070:intron 30.0%
!! GGATGATTAGTTCTTTTGTA+GGG + chr2_4:59982986-59983005 Msa0339070:intron 30.0%
! AACAATGAACAGAGTTGATT+TGG + chr2_4:59983056-59983075 Msa0339070:intron 30.0%
!!! AATTTTTGGTGCTGAAAAAC+GGG - chr2_4:59983152-59983171 None:intergenic 30.0%
!!! CAATTTTTGGTGCTGAAAAA+CGG - chr2_4:59983153-59983172 None:intergenic 30.0%
TAAGTGCTTATGCTATAATC+TGG - chr2_4:59983281-59983300 None:intergenic 30.0%
TTTCATAAGTTCTTACCGAA+CGG + chr2_4:59983444-59983463 Msa0339070:intron 30.0%
GTTTGAAAAATTACCACCAA+GGG - chr2_4:59983521-59983540 None:intergenic 30.0%
CATATATTGCATTGTATCTC+TGG + chr2_4:59983732-59983751 Msa0339070:intron 30.0%
TAAATTATTGTAGCTAGCGT+GGG + chr2_4:59983862-59983881 Msa0339070:intron 30.0%
!! CATAAACAGAGATTTTGACA+TGG - chr2_4:59983955-59983974 None:intergenic 30.0%
! TCTTTATCAGTTACTTTCCA+TGG + chr2_4:59984121-59984140 Msa0339070:CDS 30.0%
! TCTAATAGTTGATTCTGAGT+TGG + chr2_4:59984150-59984169 Msa0339070:CDS 30.0%
TAAGGTGATAAATATCCATG+TGG - chr2_4:59984384-59984403 None:intergenic 30.0%
!! GCTGAAATTTTATTTGGTCT+TGG + chr2_4:59984680-59984699 Msa0339070:CDS 30.0%
! ATGAAAGAGTTACTCTTTTC+GGG - chr2_4:59984849-59984868 None:intergenic 30.0%
TCAATGCATAAAACATGACA+AGG - chr2_4:59984895-59984914 None:intergenic 30.0%
!!! GACTCGTGTTTTTTAATTGA+AGG + chr2_4:59984944-59984963 Msa0339070:intron 30.0%
ATCCATGTCTTATACTTGAT+AGG - chr2_4:59985004-59985023 None:intergenic 30.0%
!! TGCTTTGAGTAAAGTTTTCT+TGG + chr2_4:59985074-59985093 Msa0339070:intron 30.0%
TTTGATGCTTTGTATCATCA+TGG + chr2_4:59985152-59985171 Msa0339070:intron 30.0%
TTGATGCTTTGTATCATCAT+GGG + chr2_4:59985153-59985172 Msa0339070:intron 30.0%
AAATAGAAGATGCAAGTGAA+TGG - chr2_4:59985209-59985228 None:intergenic 30.0%
! ATATAGTCTTGGGTAGTTAT+CGG + chr2_4:59985318-59985337 Msa0339070:intron 30.0%
TGTCCTTATAGTCTAATCTT+TGG + chr2_4:59985449-59985468 Msa0339070:intron 30.0%
! GAAGAAATTTGACCGTATTT+TGG + chr2_4:59985561-59985580 Msa0339070:CDS 30.0%
GTGAAATCACAACCAAAATA+CGG - chr2_4:59985576-59985595 None:intergenic 30.0%
AAAAAGCTGAAGTTCTATAC+TGG + chr2_4:59985649-59985668 Msa0339070:CDS 30.0%
TTCTTGTAGATGAGATTATC+AGG - chr2_4:59985970-59985989 None:intergenic 30.0%
!! ATCTACAAGAACATTGACTT+CGG + chr2_4:59985979-59985998 Msa0339070:CDS 30.0%
! GGTACTCTTTTATCATAAAC+TGG - chr2_4:59986188-59986207 None:intergenic 30.0%
!! TTTATGATAAAAGAGTACCC+TGG + chr2_4:59986189-59986208 Msa0339070:CDS 30.0%
!! TTCTGGTTAGTCATGATTTT+AGG + chr2_4:59986434-59986453 Msa0339070:three_prime_UTR 30.0%
! TGATTTTAGGCTCATAAATC+AGG + chr2_4:59986447-59986466 Msa0339070:three_prime_UTR 30.0%
ATGACCTTGTATTACAATGT+AGG + chr2_4:59986624-59986643 Msa0339070:three_prime_UTR 30.0%
AACAAATATTACAGAGGTGA+CGG - chr2_4:59986761-59986780 None:intergenic 30.0%
CCATTATCAATGTATCATGT+TGG - chr2_4:59986829-59986848 None:intergenic 30.0%
CCAACATGATACATTGATAA+TGG + chr2_4:59986826-59986845 Msa0339070:three_prime_UTR 30.0%
! ATAGTGTTGCTAACGGAATT+GGG + chr2_4:59982784-59982803 Msa0339070:CDS 35.0%
GGGATATTCAGATATCTGAT+CGG + chr2_4:59982805-59982824 Msa0339070:CDS 35.0%
! TCCGAAGAGTGAAATCATTT+TGG + chr2_4:59983103-59983122 Msa0339070:intron 35.0%
GCCAAAATGATTTCACTCTT+CGG - chr2_4:59983107-59983126 None:intergenic 35.0%
GCGTTACATTTATCCAATCA+GGG - chr2_4:59983129-59983148 None:intergenic 35.0%
!!! ATTTTTGGTGCTGAAAAACG+GGG - chr2_4:59983151-59983170 None:intergenic 35.0%
TTCATAAGTTCTTACCGAAC+GGG + chr2_4:59983445-59983464 Msa0339070:intron 35.0%
TAAGCACTTATAAACCCGTT+CGG - chr2_4:59983462-59983481 None:intergenic 35.0%
GGTTTGAAAAATTACCACCA+AGG - chr2_4:59983522-59983541 None:intergenic 35.0%
GTTGAAATTTGAAGGACACA+AGG - chr2_4:59983656-59983675 None:intergenic 35.0%
TCTGGAAAAAAAGAGAGAAC+TGG + chr2_4:59983750-59983769 Msa0339070:intron 35.0%
CTAAATTATTGTAGCTAGCG+TGG + chr2_4:59983861-59983880 Msa0339070:intron 35.0%
TCTGTTTATGAATCCTTCAG+AGG + chr2_4:59983965-59983984 Msa0339070:CDS 35.0%
TTTATGAATCCTTCAGAGGT+AGG + chr2_4:59983969-59983988 Msa0339070:intron 35.0%
GAAATATTACCTACCTCTGA+AGG - chr2_4:59983981-59984000 None:intergenic 35.0%
CAACTATTAGATCATGTCCA+TGG - chr2_4:59984141-59984160 None:intergenic 35.0%
! TCTGAGTTGGAGCTAAATTA+TGG + chr2_4:59984163-59984182 Msa0339070:CDS 35.0%
AGTTGGAGCTAAATTATGGA+AGG + chr2_4:59984167-59984186 Msa0339070:CDS 35.0%
!! TATGGTTTGCTTGGATTGAA+CGG + chr2_4:59984301-59984320 Msa0339070:CDS 35.0%
TGATAAATATCCATGTGGTC+TGG - chr2_4:59984379-59984398 None:intergenic 35.0%
TGGATATTTATCACCTTAGC+CGG + chr2_4:59984386-59984405 Msa0339070:CDS 35.0%
GAGAAAGAAGCTGAAATTCT+GGG + chr2_4:59984478-59984497 Msa0339070:CDS 35.0%
CCGTAAAAGCAAAACAACTT+GGG - chr2_4:59984547-59984566 None:intergenic 35.0%
!! CCCAAGTTGTTTTGCTTTTA+CGG + chr2_4:59984544-59984563 Msa0339070:intron 35.0%
TCCGTAAAAGCAAAACAACT+TGG - chr2_4:59984548-59984567 None:intergenic 35.0%
TTATTTATGTTCCAGGAGGA+TGG + chr2_4:59984584-59984603 Msa0339070:intron 35.0%
! CACTTGAACGAGTTTTTGAA+CGG + chr2_4:59984618-59984637 Msa0339070:CDS 35.0%
!! CGTGCTGCTGAAATTTTATT+TGG + chr2_4:59984674-59984693 Msa0339070:CDS 35.0%
! AAGAAGACACGTGATTTTTC+TGG + chr2_4:59984725-59984744 Msa0339070:CDS 35.0%
AATGGTTGGGTTCATAAACA+GGG - chr2_4:59984783-59984802 None:intergenic 35.0%
CATCAAGTAGAAGAATGGTT+GGG - chr2_4:59984796-59984815 None:intergenic 35.0%
TCATCAAGTAGAAGAATGGT+TGG - chr2_4:59984797-59984816 None:intergenic 35.0%
AGGTTCATCAAGTAGAAGAA+TGG - chr2_4:59984801-59984820 None:intergenic 35.0%
! TGAAAGAGTTACTCTTTTCG+GGG - chr2_4:59984848-59984867 None:intergenic 35.0%
TGCCTATCAAGTATAAGACA+TGG + chr2_4:59984999-59985018 Msa0339070:intron 35.0%
CGAACAAACTAGAACTAGAA+GGG - chr2_4:59985036-59985055 None:intergenic 35.0%
ACGAACAAACTAGAACTAGA+AGG - chr2_4:59985037-59985056 None:intergenic 35.0%
!! TCTAGTTCTAGTTTGTTCGT+TGG + chr2_4:59985037-59985056 Msa0339070:intron 35.0%
!! CTAGTTCTAGTTTGTTCGTT+GGG + chr2_4:59985038-59985057 Msa0339070:intron 35.0%
CTTTACTCAAAGCAACATAG+AGG - chr2_4:59985068-59985087 None:intergenic 35.0%
GCTTTGATAAAACATTTGGC+AGG + chr2_4:59985102-59985121 Msa0339070:intron 35.0%
TTCGTACTCTGATATAGTCT+TGG + chr2_4:59985307-59985326 Msa0339070:intron 35.0%
TCGTACTCTGATATAGTCTT+GGG + chr2_4:59985308-59985327 Msa0339070:intron 35.0%
CGACCAAAGATTAGACTATA+AGG - chr2_4:59985455-59985474 None:intergenic 35.0%
TTTGGTCGTATATCATAGCT+GGG + chr2_4:59985467-59985486 Msa0339070:intron 35.0%
GACACCATTAAGGAAATCTT+GGG - chr2_4:59985602-59985621 None:intergenic 35.0%
AGACACCATTAAGGAAATCT+TGG - chr2_4:59985603-59985622 None:intergenic 35.0%
TATTTGTGCAGACACCATTA+AGG - chr2_4:59985612-59985631 None:intergenic 35.0%
!!! TCAGCTTTTTGTTTTGCATG+TGG - chr2_4:59985639-59985658 None:intergenic 35.0%
TGCAATGTATTCCTTCATTG+AGG - chr2_4:59985758-59985777 None:intergenic 35.0%
AAGGAATACATTGCACGATT+TGG + chr2_4:59985763-59985782 Msa0339070:CDS 35.0%
AGAGAAGACTCTTGCAAAAA+TGG + chr2_4:59985825-59985844 Msa0339070:CDS 35.0%
!! TCTACAAGAACATTGACTTC+GGG + chr2_4:59985980-59985999 Msa0339070:CDS 35.0%
CTTGACTGAAAAACTAGACT+TGG + chr2_4:59986149-59986168 Msa0339070:CDS 35.0%
TATTGGGAAGTTTGGATTGT+CGG + chr2_4:59986239-59986258 Msa0339070:CDS 35.0%
TCCTTTGTCCAATTTCTCAT+AGG - chr2_4:59986282-59986301 None:intergenic 35.0%
! TTTTAGGCTCATAAATCAGG+TGG + chr2_4:59986450-59986469 Msa0339070:three_prime_UTR 35.0%
! GGTCATAATCGTGACATTTT+GGG - chr2_4:59986610-59986629 None:intergenic 35.0%
! AGGTCATAATCGTGACATTT+TGG - chr2_4:59986611-59986630 None:intergenic 35.0%
CCAACCTACATTGTAATACA+AGG - chr2_4:59986631-59986650 None:intergenic 35.0%
CCTTGTATTACAATGTAGGT+TGG + chr2_4:59986628-59986647 Msa0339070:three_prime_UTR 35.0%
GAATCAGACATAGAAATCAC+CGG + chr2_4:59986709-59986728 Msa0339070:three_prime_UTR 35.0%
TGCTTATCAATTTGGTTGCT+TGG + chr2_4:59986796-59986815 Msa0339070:three_prime_UTR 35.0%
ATTGTAGTACTTGTTTCCTC+TGG + chr2_4:59986886-59986905 Msa0339070:three_prime_UTR 35.0%
GAAAAAAGCTGCTCAGAAGA+AGG + chr2_4:59982686-59982705 Msa0339070:CDS 40.0%
! GATAGTGTTGCTAACGGAAT+TGG + chr2_4:59982783-59982802 Msa0339070:CDS 40.0%
! TAGTGTTGCTAACGGAATTG+GGG + chr2_4:59982785-59982804 Msa0339070:CDS 40.0%
AATATCCCTAGAGAGAGGAT+GGG - chr2_4:59982853-59982872 None:intergenic 40.0%
!! GAAATCATTTTGGCCCTGAT+TGG + chr2_4:59983113-59983132 Msa0339070:intron 40.0%
GGCGTTACATTTATCCAATC+AGG - chr2_4:59983130-59983149 None:intergenic 40.0%
! AATCCCATATTTTCGGACAC+TGG + chr2_4:59983803-59983822 Msa0339070:intron 40.0%
ATGCCAGTGTCCGAAAATAT+GGG - chr2_4:59983809-59983828 None:intergenic 40.0%
TATGCCAGTGTCCGAAAATA+TGG - chr2_4:59983810-59983829 None:intergenic 40.0%
!! AGATTTTGACATGGGCTACA+TGG - chr2_4:59983946-59983965 None:intergenic 40.0%
!! TTCAGACGTTATGGTTTGCT+TGG + chr2_4:59984292-59984311 Msa0339070:intron 40.0%
TCTACGCTACTTACAGCAAT+AGG + chr2_4:59984334-59984353 Msa0339070:CDS 40.0%
! ATATCCATGTGGTCTGGAAT+AGG - chr2_4:59984373-59984392 None:intergenic 40.0%
GGATATTTATCACCTTAGCC+GGG + chr2_4:59984387-59984406 Msa0339070:CDS 40.0%
TCATTAGTTGTGACGAGGAA+AGG + chr2_4:59984446-59984465 Msa0339070:CDS 40.0%
TGACGAGGAAAGGTTGAAAT+TGG + chr2_4:59984456-59984475 Msa0339070:CDS 40.0%
GGAGAAAGAAGCTGAAATTC+TGG + chr2_4:59984477-59984496 Msa0339070:CDS 40.0%
! AATTTCAGCAGCACGCTTTT+CGG - chr2_4:59984669-59984688 None:intergenic 40.0%
! AAGACACGTGATTTTTCTGG+TGG + chr2_4:59984728-59984747 Msa0339070:CDS 40.0%
GAATGGTTGGGTTCATAAAC+AGG - chr2_4:59984784-59984803 None:intergenic 40.0%
GATGAACCTACAAATCACCT+TGG + chr2_4:59984812-59984831 Msa0339070:CDS 40.0%
CTTTGGTCGTATATCATAGC+TGG + chr2_4:59985466-59985485 Msa0339070:intron 40.0%
! TAGATTTGGAAGCATGTGTG+TGG + chr2_4:59985524-59985543 Msa0339070:intron 40.0%
CACTCCCAAGATTTCCTTAA+TGG + chr2_4:59985595-59985614 Msa0339070:CDS 40.0%
TCTTCTCTTTACTCTGAGCT+TGG - chr2_4:59985813-59985832 None:intergenic 40.0%
!! AGTTTTCCGCTTTGTTGATG+TGG + chr2_4:59985891-59985910 Msa0339070:CDS 40.0%
!! GTTTTCCGCTTTGTTGATGT+GGG + chr2_4:59985892-59985911 Msa0339070:CDS 40.0%
!! TTTTCCGCTTTGTTGATGTG+GGG + chr2_4:59985893-59985912 Msa0339070:CDS 40.0%
!! CTACAAGAACATTGACTTCG+GGG + chr2_4:59985981-59986000 Msa0339070:CDS 40.0%
AATCACCTGTCATAAGCTTC+AGG - chr2_4:59986065-59986084 None:intergenic 40.0%
GAAGCTTATGACAGGTGATT+TGG + chr2_4:59986065-59986084 Msa0339070:CDS 40.0%
!! GGTGATTTGGTTCCTTTAGA+TGG + chr2_4:59986078-59986097 Msa0339070:CDS 40.0%
! TTTGGTTCCTTTAGATGGCA+TGG + chr2_4:59986083-59986102 Msa0339070:CDS 40.0%
!! CTAGTTTTTCAGTCAAGTGC+TGG - chr2_4:59986146-59986165 None:intergenic 40.0%
!! AAAAGAGTACCCTGGAAATG+AGG + chr2_4:59986197-59986216 Msa0339070:CDS 40.0%
TCCTTTCTTCCTCATTTCCA+GGG - chr2_4:59986209-59986228 None:intergenic 40.0%
ATCCTTTCTTCCTCATTTCC+AGG - chr2_4:59986210-59986229 None:intergenic 40.0%
AAAGGATGAGAGCAGCTATT+GGG + chr2_4:59986223-59986242 Msa0339070:CDS 40.0%
ATTGGGAAGTTTGGATTGTC+GGG + chr2_4:59986240-59986259 Msa0339070:CDS 40.0%
AGGTGATGCCTATGAGAAAT+TGG + chr2_4:59986271-59986290 Msa0339070:CDS 40.0%
GCCTATGAGAAATTGGACAA+AGG + chr2_4:59986278-59986297 Msa0339070:CDS 40.0%
TCATCTAATAGCAGCAAGTG+AGG - chr2_4:59986340-59986359 None:intergenic 40.0%
ATCCCATTCATTCAATGCCT+CGG - chr2_4:59986404-59986423 None:intergenic 40.0%
TGATCAAACAGTGACCAGAT+GGG + chr2_4:59986495-59986514 Msa0339070:three_prime_UTR 40.0%
CATAATATCACCTTCCCATC+TGG - chr2_4:59986512-59986531 None:intergenic 40.0%
CAGATGGGAAGGTGATATTA+TGG + chr2_4:59986510-59986529 Msa0339070:three_prime_UTR 40.0%
! ATAAACCCGCCTTTTCCTTT+AGG - chr2_4:59986549-59986568 None:intergenic 40.0%
GATATCTGATCGGACATGCA+CGG + chr2_4:59982815-59982834 Msa0339070:CDS 45.0%
ATATCTGATCGGACATGCAC+GGG + chr2_4:59982816-59982835 Msa0339070:CDS 45.0%
TTTGTTCCCATCCTCTCTCT+AGG + chr2_4:59982844-59982863 Msa0339070:CDS 45.0%
TTGTTCCCATCCTCTCTCTA+GGG + chr2_4:59982845-59982864 Msa0339070:CDS 45.0%
GAATATCCCTAGAGAGAGGA+TGG - chr2_4:59982854-59982873 None:intergenic 45.0%
! TCCTCTCTCTAGGGATATTC+AGG + chr2_4:59982854-59982873 Msa0339070:CDS 45.0%
ACCTGAATATCCCTAGAGAG+AGG - chr2_4:59982858-59982877 None:intergenic 45.0%
AAGTGAATCCATCAGACCCT+TGG + chr2_4:59983502-59983521 Msa0339070:intron 45.0%
AATTACCACCAAGGGTCTGA+TGG - chr2_4:59983513-59983532 None:intergenic 45.0%
TGAACACCTAGTCAAGCAGT+TGG + chr2_4:59983899-59983918 Msa0339070:intron 45.0%
GAACACCTAGTCAAGCAGTT+GGG + chr2_4:59983900-59983919 Msa0339070:intron 45.0%
TGTCAGAGGCTTCAATTTCC+CGG - chr2_4:59984408-59984427 None:intergenic 45.0%
TTTATGTTCCAGGAGGATGG+TGG + chr2_4:59984587-59984606 Msa0339070:intron 45.0%
! TGAACGAGTTTTTGAACGGC+TGG + chr2_4:59984622-59984641 Msa0339070:CDS 45.0%
! TTTTGAACGGCTGGAAGCTA+TGG + chr2_4:59984631-59984650 Msa0339070:CDS 45.0%
TGGTTTCAACAAGCAGATGC+AGG + chr2_4:59984700-59984719 Msa0339070:CDS 45.0%
!! CACGTGATTTTTCTGGTGGA+TGG + chr2_4:59984732-59984751 Msa0339070:CDS 45.0%
! TTTCTGGTGGATGGAGAATG+AGG + chr2_4:59984741-59984760 Msa0339070:CDS 45.0%
! GGGATACCAAGGTGATTTGT+AGG - chr2_4:59984821-59984840 None:intergenic 45.0%
!! GTTACTCTTTTCGGGGAAGA+GGG - chr2_4:59984841-59984860 None:intergenic 45.0%
!! AGTTACTCTTTTCGGGGAAG+AGG - chr2_4:59984842-59984861 None:intergenic 45.0%
!! TTCTAGTTTGTTCGTTGGGC+AGG + chr2_4:59985042-59985061 Msa0339070:intron 45.0%
AGAACCAGATGAAGCAGTAC+AGG + chr2_4:59985713-59985732 Msa0339070:CDS 45.0%
! TACATTGCACGATTTGGCCA+TGG + chr2_4:59985769-59985788 Msa0339070:CDS 45.0%
!!! GAGCTAGTTTTGCTGATCCA+TGG - chr2_4:59985789-59985808 None:intergenic 45.0%
ACTCTTGCAAAAATGGAGCG+CGG + chr2_4:59985832-59985851 Msa0339070:CDS 45.0%
GTTTCCCCACATCAACAAAG+CGG - chr2_4:59985900-59985919 None:intergenic 45.0%
CAAATGTCACCTCCACAAAC+TGG - chr2_4:59985939-59985958 None:intergenic 45.0%
CAGTTTGTGGAGGTGACATT+TGG + chr2_4:59985937-59985956 Msa0339070:CDS 45.0%
TTTAGACTCCAGGATTGCTC+TGG + chr2_4:59986008-59986027 Msa0339070:CDS 45.0%
ACGTTCCTGAAGCTTATGAC+AGG + chr2_4:59986057-59986076 Msa0339070:CDS 45.0%
GTGCAATGCGAAGGTGATTA+TGG - chr2_4:59986116-59986135 None:intergenic 45.0%
GGTGAAATTGTGCAATGCGA+AGG - chr2_4:59986125-59986144 None:intergenic 45.0%
ACCCTGGAAATGAGGAAGAA+AGG + chr2_4:59986205-59986224 Msa0339070:CDS 45.0%
GAAAGGATGAGAGCAGCTAT+TGG + chr2_4:59986222-59986241 Msa0339070:CDS 45.0%
AGAGCAGCTATTGGGAAGTT+TGG + chr2_4:59986231-59986250 Msa0339070:CDS 45.0%
!! TAGCCGAGGCATTGAATGAA+TGG + chr2_4:59986398-59986417 Msa0339070:three_prime_UTR 45.0%
!! AGCCGAGGCATTGAATGAAT+GGG + chr2_4:59986399-59986418 Msa0339070:three_prime_UTR 45.0%
!! GAGGCATTGAATGAATGGGA+TGG + chr2_4:59986403-59986422 Msa0339070:three_prime_UTR 45.0%
GCATTGAATGAATGGGATGG+TGG + chr2_4:59986406-59986425 Msa0339070:three_prime_UTR 45.0%
AGCACACACCCATATCTCAT+GGG - chr2_4:59986476-59986495 None:intergenic 45.0%
CTGATCAAACAGTGACCAGA+TGG + chr2_4:59986494-59986513 Msa0339070:three_prime_UTR 45.0%
GGATTTCAAGCTGCACCTAA+AGG + chr2_4:59986531-59986550 Msa0339070:three_prime_UTR 45.0%
CAAGCTGCACCTAAAGGAAA+AGG + chr2_4:59986537-59986556 Msa0339070:three_prime_UTR 45.0%
GCGGGTTTATCTGACTGAAA+AGG + chr2_4:59986559-59986578 Msa0339070:three_prime_UTR 45.0%
! CTTGAGGTGGATTTCTCTCA+TGG + chr2_4:59986663-59986682 Msa0339070:three_prime_UTR 45.0%
!!! CTTTTTCGATGAAGCGGTGG+CGG - chr2_4:59982745-59982764 None:intergenic 50.0%
!!! CGACGCCTTTTTCGATGAAG+CGG - chr2_4:59982751-59982770 None:intergenic 50.0%
! CGCTTCATCGAAAAAGGCGT+CGG + chr2_4:59982749-59982768 Msa0339070:CDS 50.0%
!! ATCGAAAAAGGCGTCGGAGA+AGG + chr2_4:59982755-59982774 Msa0339070:CDS 50.0%
! GCGGTGGATAGTGTTGCTAA+CGG + chr2_4:59982777-59982796 Msa0339070:CDS 50.0%
TGAATCCATCAGACCCTTGG+TGG + chr2_4:59983505-59983524 Msa0339070:intron 50.0%
TTGCTTGGATTGAACGGCTG+TGG + chr2_4:59984307-59984326 Msa0339070:CDS 50.0%
! GGTCTGGAATAGGAAGCTCA+CGG - chr2_4:59984363-59984382 None:intergenic 50.0%
GCTTCCTATTCCAGACCACA+TGG + chr2_4:59984366-59984385 Msa0339070:CDS 50.0%
AGGCTTCAATTTCCCGGCTA+AGG - chr2_4:59984402-59984421 None:intergenic 50.0%
GGCTGTCATTAGTTGTGACG+AGG + chr2_4:59984441-59984460 Msa0339070:CDS 50.0%
! AGCTGAAATTCTGGGAGCAC+AGG + chr2_4:59984486-59984505 Msa0339070:CDS 50.0%
GGCTGTGCTGTATTGTGCTT+TGG + chr2_4:59985174-59985193 Msa0339070:intron 50.0%
! TTTGGAAGCATGTGTGTGGC+TGG + chr2_4:59985528-59985547 Msa0339070:CDS 50.0%
TGTTCAGACACGTGCTGAAC+TGG + chr2_4:59985687-59985706 Msa0339070:CDS 50.0%
ACCAGATGAAGCAGTACAGG+TGG + chr2_4:59985716-59985735 Msa0339070:CDS 50.0%
CCAGATGAAGCAGTACAGGT+GGG + chr2_4:59985717-59985736 Msa0339070:CDS 50.0%
GGAGCAGATTGCCTCAATGA+AGG + chr2_4:59985744-59985763 Msa0339070:CDS 50.0%
ACAAACTGGAGAACAGGTGG+GGG - chr2_4:59985925-59985944 None:intergenic 50.0%
CACAAACTGGAGAACAGGTG+GGG - chr2_4:59985926-59985945 None:intergenic 50.0%
CCACAAACTGGAGAACAGGT+GGG - chr2_4:59985927-59985946 None:intergenic 50.0%
TCCACAAACTGGAGAACAGG+TGG - chr2_4:59985928-59985947 None:intergenic 50.0%
ACCTGTTCTCCAGTTTGTGG+AGG + chr2_4:59985927-59985946 Msa0339070:CDS 50.0%
ACCTCCACAAACTGGAGAAC+AGG - chr2_4:59985931-59985950 None:intergenic 50.0%
ATTGCTCTGGTTGGACCCAA+TGG + chr2_4:59986021-59986040 Msa0339070:CDS 50.0%
CGACGAACCATGCCATCTAA+AGG - chr2_4:59986093-59986112 None:intergenic 50.0%
TGGATTGTCGGGTAAAGCAC+AGG + chr2_4:59986251-59986270 Msa0339070:CDS 50.0%
CAGCAAGTGAGGCTGTCTAT+AGG - chr2_4:59986329-59986348 None:intergenic 50.0%
!! GACAATTGACTCGTTAGCCG+AGG + chr2_4:59986384-59986403 Msa0339070:three_prime_UTR 50.0%
! GAATGAATGGGATGGTGGCA+TGG + chr2_4:59986411-59986430 Msa0339070:three_prime_UTR 50.0%
ATCAGGTGGCCCATGAGATA+TGG + chr2_4:59986464-59986483 Msa0339070:three_prime_UTR 50.0%
TCAGGTGGCCCATGAGATAT+GGG + chr2_4:59986465-59986484 Msa0339070:three_prime_UTR 50.0%
CAGCACACACCCATATCTCA+TGG - chr2_4:59986477-59986496 None:intergenic 50.0%
CAAACAGTGACCAGATGGGA+AGG + chr2_4:59986499-59986518 Msa0339070:three_prime_UTR 50.0%
GCTGCACCTAAAGGAAAAGG+CGG + chr2_4:59986540-59986559 Msa0339070:three_prime_UTR 50.0%
CTGCACCTAAAGGAAAAGGC+GGG + chr2_4:59986541-59986560 Msa0339070:three_prime_UTR 50.0%
!! TTGGTGTTGCTAGCTGCTTG+AGG + chr2_4:59986647-59986666 Msa0339070:three_prime_UTR 50.0%
CTTCCCTCCTCTCTTTGCAG+CGG - chr2_4:59982718-59982737 None:intergenic 55.0%
CGCCACCGCTTCATCGAAAA+AGG + chr2_4:59982743-59982762 Msa0339070:CDS 55.0%
!!! CGCCTTTTTCGATGAAGCGG+TGG - chr2_4:59982748-59982767 None:intergenic 55.0%
!! GAAAAAGGCGTCGGAGAAGG+CGG + chr2_4:59982758-59982777 Msa0339070:CDS 55.0%
ACCTAGTCAAGCAGTTGGGC+TGG + chr2_4:59983904-59983923 Msa0339070:intron 55.0%
ACCAGCCCAACTGCTTGACT+AGG - chr2_4:59983908-59983927 None:intergenic 55.0%
!! AGCAGTTGGGCTGGTAGCAA+TGG + chr2_4:59983913-59983932 Msa0339070:intron 55.0%
AGCCTCTGACATGTCTGCGT+TGG + chr2_4:59984417-59984436 Msa0339070:CDS 55.0%
CTCCAACGCAGACATGTCAG+AGG - chr2_4:59984422-59984441 None:intergenic 55.0%
CTCTGACATGTCTGCGTTGG+AGG + chr2_4:59984420-59984439 Msa0339070:CDS 55.0%
! ATGTTCCAGGAGGATGGTGG+TGG + chr2_4:59984590-59984609 Msa0339070:intron 55.0%
TTCGGGGAAGAGGGATACCA+AGG - chr2_4:59984832-59984851 None:intergenic 55.0%
CCCACCTGTACTGCTTCATC+TGG - chr2_4:59985720-59985739 None:intergenic 55.0%
CTTGCAAAAATGGAGCGCGG+TGG + chr2_4:59985835-59985854 Msa0339070:CDS 55.0%
! CGGTGGACTTACAGAGAAGG+TGG + chr2_4:59985852-59985871 Msa0339070:CDS 55.0%
CCCACCTGTTCTCCAGTTTG+TGG + chr2_4:59985924-59985943 Msa0339070:CDS 55.0%
! TCGGGGTCGATTTAGACTCC+AGG + chr2_4:59985998-59986017 Msa0339070:CDS 55.0%
GACTCCAGGATTGCTCTGGT+TGG + chr2_4:59986012-59986031 Msa0339070:CDS 55.0%
TGGTTGGACCCAATGGAGCT+GGG + chr2_4:59986028-59986047 Msa0339070:CDS 55.0%
GTGCTCTTCCCAGCTCCATT+GGG - chr2_4:59986039-59986058 None:intergenic 55.0%
GGAGTCGCGTGATCTTTGCA+TGG + chr2_4:59986299-59986318 Msa0339070:CDS 55.0%
! ATGGGATGGTGGCATGGTTC+TGG + chr2_4:59986417-59986436 Msa0339070:three_prime_UTR 55.0%
! GTGTTGCTAGCTGCTTGAGG+TGG + chr2_4:59986650-59986669 Msa0339070:three_prime_UTR 55.0%
CGCTGCAAAGAGAGGAGGGA+AGG + chr2_4:59982716-59982735 Msa0339070:CDS 60.0%
CTTCACCACCACCATCCTCC+TGG - chr2_4:59984598-59984617 None:intergenic 60.0%
! GGAAGCATGTGTGTGGCTGG+AGG + chr2_4:59985531-59985550 Msa0339070:CDS 60.0%
GAAGCAGTACAGGTGGGAGC+AGG + chr2_4:59985723-59985742 Msa0339070:CDS 60.0%
! GCGCGGTGGACTTACAGAGA+AGG + chr2_4:59985849-59985868 Msa0339070:CDS 60.0%
GGGTCCAACCAGAGCAATCC+TGG - chr2_4:59986019-59986038 None:intergenic 60.0%
CTGGTTGGACCCAATGGAGC+TGG + chr2_4:59986027-59986046 Msa0339070:CDS 60.0%
CGTGCTCTTCCCAGCTCCAT+TGG - chr2_4:59986040-59986059 None:intergenic 60.0%
AAGGCAGCGTCTGTGATGCG+CGG + chr2_4:59986578-59986597 Msa0339070:three_prime_UTR 60.0%
CCCTCCTCTCTTTGCAGCGG+CGG - chr2_4:59982715-59982734 None:intergenic 65.0%
CCGCCGCTGCAAAGAGAGGA+GGG + chr2_4:59982712-59982731 Msa0339070:CDS 65.0%
!! AAAGGCGTCGGAGAAGGCGG+TGG + chr2_4:59982761-59982780 Msa0339070:CDS 65.0%
GCTGCCGCCGCTGCAAAGAG+AGG + chr2_4:59982708-59982727 Msa0339070:CDS 70.0%
GCCGCCGCTGCAAAGAGAGG+AGG + chr2_4:59982711-59982730 Msa0339070:CDS 70.0%
Chromosome Type Strat End Strand Name
chr2_4 gene 59982684 59986909 59982684 ID=Msa0339070;Name=Msa0339070
chr2_4 mRNA 59982684 59986909 59982684 ID=Msa0339070-mRNA-1;Parent=Msa0339070;Name=Msa0339070-mRNA-1;_AED=0.19;_eAED=0.19;_QI=0|0.8|0.83|1|1|1|6|577|517
chr2_4 exon 59982684 59982875 59982684 ID=Msa0339070-mRNA-1:exon:18594;Parent=Msa0339070-mRNA-1
chr2_4 exon 59983951 59983986 59983951 ID=Msa0339070-mRNA-1:exon:18595;Parent=Msa0339070-mRNA-1
chr2_4 exon 59984115 59984188 59984115 ID=Msa0339070-mRNA-1:exon:18596;Parent=Msa0339070-mRNA-1
chr2_4 exon 59984297 59984507 59984297 ID=Msa0339070-mRNA-1:exon:18597;Parent=Msa0339070-mRNA-1
chr2_4 exon 59984599 59984833 59984599 ID=Msa0339070-mRNA-1:exon:18598;Parent=Msa0339070-mRNA-1
chr2_4 exon 59985527 59986909 59985527 ID=Msa0339070-mRNA-1:exon:18599;Parent=Msa0339070-mRNA-1
chr2_4 CDS 59982684 59982875 59982684 ID=Msa0339070-mRNA-1:cds;Parent=Msa0339070-mRNA-1
chr2_4 CDS 59983951 59983986 59983951 ID=Msa0339070-mRNA-1:cds;Parent=Msa0339070-mRNA-1
chr2_4 CDS 59984115 59984188 59984115 ID=Msa0339070-mRNA-1:cds;Parent=Msa0339070-mRNA-1
chr2_4 CDS 59984297 59984507 59984297 ID=Msa0339070-mRNA-1:cds;Parent=Msa0339070-mRNA-1
chr2_4 CDS 59984599 59984833 59984599 ID=Msa0339070-mRNA-1:cds;Parent=Msa0339070-mRNA-1
chr2_4 CDS 59985527 59986332 59985527 ID=Msa0339070-mRNA-1:cds;Parent=Msa0339070-mRNA-1
chr2_4 three_prime_UTR 59986333 59986909 59986333 ID=Msa0339070-mRNA-1:three_prime_utr;Parent=Msa0339070-mRNA-1
Gene Sequence

>Msa0339070

AAGAAAAAAGCTGCTCAGAAGAAGGCTGCCGCCGCTGCAAAGAGAGGAGGGAAGGTCGCCGCCACCGCTTCATCGAAAAAGGCGTCGGAGAAGGCGGTGGATAGTGTTGCTAACGGAATTGGGGATATTCAGATATCTGATCGGACATGCACGGGAGTACTTTGTTCCCATCCTCTCTCTAGGGATATTCAGCCCATGTCAAAATCTCTGTTTATGAATCCTTCAGAGATAGAATCTTTATCAGTTACTTTCCATGGACATGATCTAATAGTTGATTCTGAGTTGGAGCTAAATTATGGAAGACGTTATGGTTTGCTTGGATTGAACGGCTGTGGAAAATCTACGCTACTTACAGCAATAGGTTGCCGTGAGCTTCCTATTCCAGACCACATGGATATTTATCACCTTAGCCGGGAAATTGAAGCCTCTGACATGTCTGCGTTGGAGGCTGTCATTAGTTGTGACGAGGAAAGGTTGAAATTGGAGAAAGAAGCTGAAATTCTGGGAGCACAGGAGGATGGTGGTGGTGAAGCACTTGAACGAGTTTTTGAACGGCTGGAAGCTATGGATGCATCAACTGCCGAAAAGCGTGCTGCTGAAATTTTATTTGGTCTTGGTTTCAACAAGCAGATGCAGGCAAAGAAGACACGTGATTTTTCTGGTGGATGGAGAATGAGGATTGCTTTAGCACGAGCCCTGTTTATGAACCCAACCATTCTTCTACTTGATGAACCTACAAATCACCTTGATTTGGAAGCATGTGTGTGGCTGGAGGAGAATTTGAAGAAATTTGACCGTATTTTGGTTGTGATTTCACACTCCCAAGATTTCCTTAATGGTGTCTGCACAAATATCATCCACATGCAAAACAAAAAGCTGAAGTTCTATACTGGTAATTATGATCAATATGTTCAGACACGTGCTGAACTGGAAGAGAACCAGATGAAGCAGTACAGGTGGGAGCAGGAGCAGATTGCCTCAATGAAGGAATACATTGCACGATTTGGCCATGGATCAGCAAAACTAGCTCGCCAAGCTCAGAGTAAAGAGAAGACTCTTGCAAAAATGGAGCGCGGTGGACTTACAGAGAAGGTGGTAAGAGACAAAATTTTAGTTTTCCGCTTTGTTGATGTGGGGAAACTTCCCCCACCTGTTCTCCAGTTTGTGGAGGTGACATTTGGCTACACTCCTGATAATCTCATCTACAAGAACATTGACTTCGGGGTCGATTTAGACTCCAGGATTGCTCTGGTTGGACCCAATGGAGCTGGGAAGAGCACGTTCCTGAAGCTTATGACAGGTGATTTGGTTCCTTTAGATGGCATGGTTCGTCGCCATAATCACCTTCGCATTGCACAATTTCACCAGCACTTGACTGAAAAACTAGACTTGGAACTGTCTGCTCTCCAGTTTATGATAAAAGAGTACCCTGGAAATGAGGAAGAAAGGATGAGAGCAGCTATTGGGAAGTTTGGATTGTCGGGTAAAGCACAGGTGATGCCTATGAGAAATTGGACAAAGGAGTCGCGTGATCTTTGCATGGTTAGCCTATAG
Protein sequence

>Msa0339070

KKKAAQKKAAAAAKRGGKVAATASSKKASEKAVDSVANGIGDIQISDRTCTGVLCSHPLSRDIQPMSKSLFMNPSEIESLSVTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGCRELPIPDHMDIYHLSREIEASDMSALEAVISCDEERLKLEKEAEILGAQEDGGGEALERVFERLEAMDASTAEKRAAEILFGLGFNKQMQAKKTRDFSGGWRMRIALARALFMNPTILLLDEPTNHLDLEACVWLEENLKKFDRILVVISHSQDFLNGVCTNIIHMQNKKLKFYTGNYDQYVQTRAELEENQMKQYRWEQEQIASMKEYIARFGHGSAKLARQAQSKEKTLAKMERGGLTEKVVRDKILVFRFVDVGKLPPPVLQFVEVTFGYTPDNLIYKNIDFGVDLDSRIALVGPNGAGKSTFLKLMTGDLVPLDGMVRRHNHLRIAQFHQHLTEKLDLELSALQFMIKEYPGNEEERMRAAIGKFGLSGKAQVMPMRNWTKESRDLCMVSL*