Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0342980 | RHN50388.1 | 77.064 | 109 | 22 | 1 | 1 | 109 | 671 | 776 | 5.08e-49 | 176 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0342980 | sp|Q9FWQ5|HAC12_ARATH | 45.455 | 99 | 49 | 1 | 3 | 101 | 1599 | 1692 | 4.47e-24 | 98.6 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0342980 | A0A396HCL0 | 77.064 | 109 | 22 | 1 | 1 | 109 | 671 | 776 | 2.43e-49 | 176 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0342980 | TR | TAZ |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0135760 | Msa0342980 | 0.807361 | 5.247724e-50 | -8.615850e-47 |
| Msa0342980 | Msa0714760 | 0.865462 | 5.802092e-65 | -8.615850e-47 |
| Msa0342980 | Msa0756770 | 0.857185 | 1.938677e-62 | -8.615850e-47 |
| Msa0342980 | Msa0836180 | 0.881634 | 2.039695e-70 | -8.615850e-47 |
| Msa0342980 | Msa1175100 | 0.843027 | 1.803649e-58 | -8.615850e-47 |
| Msa0342980 | Msa1234470 | 0.829037 | 6.439939e-55 | -8.615850e-47 |
| Msa0342980 | Msa1306960 | 0.849868 | 2.452699e-60 | -8.615850e-47 |
| Msa0342980 | Msa1315480 | 0.844154 | 9.009463e-59 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0342980 | MtrunA17_Chr6g0456861 | 77.064 | 109 | 22 | 1 | 1 | 109 | 671 | 776 | 4.67e-53 | 176 |
| Msa0342980 | MtrunA17_Chr3g0138411 | 72.477 | 109 | 28 | 1 | 1 | 109 | 1100 | 1206 | 2.12e-50 | 170 |
| Msa0342980 | MtrunA17_Chr3g0133461 | 73.394 | 109 | 27 | 1 | 1 | 109 | 1237 | 1343 | 1.54e-49 | 167 |
| Msa0342980 | MtrunA17_Chr5g0438991 | 83.871 | 93 | 13 | 1 | 1 | 93 | 868 | 958 | 9.92e-49 | 165 |
| Msa0342980 | MtrunA17_Chr4g0000031 | 45.455 | 99 | 49 | 1 | 3 | 101 | 1602 | 1695 | 8.05e-24 | 94.4 |
| Msa0342980 | MtrunA17_Chr5g0401281 | 36.111 | 72 | 45 | 1 | 22 | 92 | 279 | 350 | 6.23e-12 | 60.5 |
| Msa0342980 | MtrunA17_Chr5g0401991 | 96.429 | 28 | 1 | 0 | 1 | 28 | 194 | 221 | 8.75e-12 | 59.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0342980 | AT1G16710.2 | 45.455 | 99 | 49 | 1 | 3 | 101 | 1570 | 1663 | 4.50e-25 | 98.6 |
| Msa0342980 | AT1G16710.1 | 45.455 | 99 | 49 | 1 | 3 | 101 | 1599 | 1692 | 4.55e-25 | 98.6 |
| Msa0342980 | AT1G16710.3 | 45.455 | 99 | 49 | 1 | 3 | 101 | 1573 | 1666 | 4.59e-25 | 98.6 |
| Msa0342980 | AT1G16710.10 | 45.455 | 99 | 49 | 1 | 3 | 101 | 1573 | 1666 | 4.59e-25 | 98.6 |
| Msa0342980 | AT1G16710.8 | 45.455 | 99 | 49 | 1 | 3 | 101 | 1573 | 1666 | 4.59e-25 | 98.6 |
| Msa0342980 | AT1G16710.7 | 45.455 | 99 | 49 | 1 | 3 | 101 | 1573 | 1666 | 4.59e-25 | 98.6 |
| Msa0342980 | AT1G16710.6 | 45.455 | 99 | 49 | 1 | 3 | 101 | 1534 | 1627 | 4.86e-25 | 98.6 |
| Msa0342980 | AT1G16710.4 | 45.455 | 99 | 49 | 1 | 3 | 101 | 1534 | 1627 | 4.86e-25 | 98.6 |
| Msa0342980 | AT1G16710.5 | 45.455 | 99 | 49 | 1 | 3 | 101 | 1534 | 1627 | 4.86e-25 | 98.6 |
| Msa0342980 | AT1G79000.3 | 45.455 | 99 | 49 | 1 | 3 | 101 | 1566 | 1659 | 1.39e-24 | 97.1 |
| Msa0342980 | AT1G79000.2 | 45.455 | 99 | 49 | 1 | 3 | 101 | 1590 | 1683 | 1.42e-24 | 97.1 |
| Msa0342980 | AT1G79000.1 | 45.455 | 99 | 49 | 1 | 3 | 101 | 1590 | 1683 | 1.43e-24 | 97.1 |
| Msa0342980 | AT3G12980.1 | 41.026 | 78 | 43 | 1 | 24 | 101 | 1581 | 1655 | 6.99e-15 | 69.3 |
| Msa0342980 | AT3G12980.2 | 41.026 | 78 | 43 | 1 | 24 | 101 | 1500 | 1574 | 7.11e-15 | 69.3 |
| Msa0342980 | AT5G67480.2 | 37.333 | 75 | 46 | 1 | 20 | 93 | 282 | 356 | 3.02e-11 | 58.9 |
| Msa0342980 | AT5G67480.1 | 37.333 | 75 | 46 | 1 | 20 | 93 | 271 | 345 | 3.08e-11 | 58.9 |
| Msa0342980 | AT5G67480.3 | 37.333 | 75 | 46 | 1 | 20 | 93 | 271 | 345 | 3.08e-11 | 58.9 |
| Msa0342980 | AT1G67220.1 | 35.000 | 80 | 49 | 2 | 1 | 79 | 1281 | 1358 | 4.41e-11 | 58.5 |
Find 240 sgRNAs with CRISPR-Local
Find 364 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCACACTTTGTCCTTCTTTC+AGG | 0.073241 | 3_1:+990879 | None:intergenic |
| TTCTTTCTTCCTACTGAAAA+AGG | 0.113508 | 3_1:-990410 | Msa0342980:five_prime_UTR |
| TCCTGGTAGGCAATATATTT+TGG | 0.160964 | 3_1:+990027 | None:intergenic |
| GTCTCCAATTTCAACATATT+TGG | 0.169388 | 3_1:-993534 | Msa0342980:five_prime_UTR |
| GTCTCCAATTTCAACATATT+TGG | 0.169388 | 3_1:+995104 | None:intergenic |
| AGAGTAGATTGTTTGGAAAT+AGG | 0.201852 | 3_1:-989609 | Msa0342980:five_prime_UTR |
| GAAAGTGAATAAGCAGTTTC+TGG | 0.202627 | 3_1:-991227 | Msa0342980:five_prime_UTR |
| TAATATAAGAATTATAATTT+TGG | 0.206931 | 3_1:+994810 | None:intergenic |
| GAGTAGATTGTTTGGAAATA+GGG | 0.235125 | 3_1:-989608 | Msa0342980:five_prime_UTR |
| CTTACTAAGGGTTGTTATAT+TGG | 0.244244 | 3_1:-993185 | Msa0342980:five_prime_UTR |
| TGCTTCTGTTGATTAGCTTT+TGG | 0.246779 | 3_1:+992596 | None:intergenic |
| AAGAGAAATCAACTTCAATT+TGG | 0.249229 | 3_1:-994053 | Msa0342980:five_prime_UTR |
| CACTGAATGCAAGAAATTTC+AGG | 0.254650 | 3_1:-989925 | Msa0342980:five_prime_UTR |
| GCCACCAAATATGTTGAAAT+TGG | 0.255477 | 3_1:+993530 | None:intergenic |
| GCCACCAAATATGTTGAAAT+TGG | 0.255477 | 3_1:-995108 | Msa0342980:five_prime_UTR |
| GGCAGTGAAGAAGCAGTTTC+TGG | 0.255829 | 3_1:-991969 | Msa0342980:five_prime_UTR |
| TTCCGAGTCTTTGCAATTCC+TGG | 0.259668 | 3_1:+989117 | None:intergenic |
| TGGTCAAGTGAAATTCAAAT+AGG | 0.267208 | 3_1:-995297 | Msa0342980:five_prime_UTR |
| AAATTGTGTACAACCGTAAT+TGG | 0.278809 | 3_1:-993037 | Msa0342980:five_prime_UTR |
| TTACCAAAGGCGGCTAATTC+TGG | 0.284652 | 3_1:-991628 | Msa0342980:five_prime_UTR |
| TCAAGAATTGAAGACTTTGA+TGG | 0.290325 | 3_1:+993800 | None:intergenic |
| TCAAGAATTGAAGACTTTGA+TGG | 0.290325 | 3_1:+993988 | None:intergenic |
| TCAAGAATTGAAGACTTTGA+TGG | 0.290325 | 3_1:-994648 | Msa0342980:five_prime_UTR |
| TCAAGAATTGAAGACTTTGA+TGG | 0.290325 | 3_1:-994846 | Msa0342980:five_prime_UTR |
| GCATTTGAGACGCTTCTTAC+TGG | 0.308967 | 3_1:+993747 | None:intergenic |
| GCATTTGAGACGCTTCTTAC+TGG | 0.308967 | 3_1:+993935 | None:intergenic |
| GCATTTGAGACGCTTCTTAC+TGG | 0.308967 | 3_1:-994701 | Msa0342980:five_prime_UTR |
| GCATTTGAGACGCTTCTTAC+TGG | 0.308967 | 3_1:-994899 | Msa0342980:five_prime_UTR |
| TTTCCAAAACTTCAGCTCTA+TGG | 0.309861 | 3_1:+988856 | None:intergenic |
| TTGCCATAGAGCTGAAGTTT+TGG | 0.313832 | 3_1:-988859 | Msa0342980:CDS |
| GTGAATAAATGATTTATTGT+AGG | 0.315791 | 3_1:+993681 | None:intergenic |
| TGGTCACTTAGCACTGTTCT+TGG | 0.319724 | 3_1:+991592 | None:intergenic |
| CTTCGTTTACCATGAGATAT+TGG | 0.325834 | 3_1:-990841 | Msa0342980:intron |
| TCCTCTACATCAATAGGAAT+TGG | 0.326549 | 3_1:+992678 | None:intergenic |
| TTGCATCACCAGAGTCTCTT+TGG | 0.327824 | 3_1:+990217 | None:intergenic |
| TGTTTGTCCTCTACATCAAT+AGG | 0.344000 | 3_1:+992672 | None:intergenic |
| TAATCATCCCCTTTCTTTGA+AGG | 0.345904 | 3_1:+990650 | None:intergenic |
| CATTGTTGCGTAGCGGAATT+CGG | 0.354248 | 3_1:-995428 | Msa0342980:five_prime_UTR |
| TATAGATGATTGTTAAAATT+CGG | 0.359350 | 3_1:-995403 | Msa0342980:five_prime_UTR |
| GGTCAAGTGAAATTCAAATA+GGG | 0.359363 | 3_1:-995296 | Msa0342980:five_prime_UTR |
| CTTCTGTTTAAGCTGATTGA+AGG | 0.363488 | 3_1:-991015 | Msa0342980:five_prime_UTR |
| TTCTTGAAGTAAAGTTCTAA+TGG | 0.364202 | 3_1:-993784 | Msa0342980:five_prime_UTR |
| TTCTTGAAGTAAAGTTCTAA+TGG | 0.364202 | 3_1:+994664 | None:intergenic |
| TTCTTGAAGTAAAGTTCTAA+TGG | 0.364202 | 3_1:+994862 | None:intergenic |
| AAGAGAAATCAACTTCAGTT+TGG | 0.364237 | 3_1:+994583 | None:intergenic |
| AGTGTCAAATAGAACATTAA+AGG | 0.370702 | 3_1:-990261 | Msa0342980:five_prime_UTR |
| TTTCAGACTTCAAATATGTT+TGG | 0.375360 | 3_1:+992505 | None:intergenic |
| GAATTGGAAGCTGGCTTATG+AGG | 0.376100 | 3_1:+992694 | None:intergenic |
| CTTGAGAATCTGTCCCCTCC+TGG | 0.377841 | 3_1:+992631 | None:intergenic |
| ACTTTCTGATTGTGCTTCCT+TGG | 0.380253 | 3_1:-994193 | Msa0342980:five_prime_UTR |
| ATCAAATTAATAAACAATTC+AGG | 0.381091 | 3_1:+995220 | None:intergenic |
| GTTTCTCAACTTGCTACATA+TGG | 0.388170 | 3_1:-990682 | Msa0342980:five_prime_UTR |
| GTCCTTGAGAGTAGATTGTT+TGG | 0.389989 | 3_1:-989616 | Msa0342980:five_prime_UTR |
| GCACCAGAATTAGCCGCCTT+TGG | 0.391601 | 3_1:+991625 | None:intergenic |
| AAAACTCACCAATAGTTTCC+TGG | 0.392558 | 3_1:+995079 | None:intergenic |
| CAGCAGTCTCCTTCAAAGTA+TGG | 0.394018 | 3_1:+990359 | None:intergenic |
| AAGTGTGTTGATCATAACTA+TGG | 0.394998 | 3_1:+989798 | None:intergenic |
| TCTTCAAAACATCTCTTTCG+TGG | 0.398197 | 3_1:+993107 | None:intergenic |
| GAAACTCACCAATAGTTTCC+TGG | 0.399129 | 3_1:-993559 | Msa0342980:five_prime_UTR |
| ATATATTCACAAAGATTCAT+TGG | 0.399198 | 3_1:+988814 | None:intergenic |
| AGTATGTCAATCTGAGAATC+AGG | 0.404577 | 3_1:-989434 | Msa0342980:five_prime_UTR |
| GTTATATTGGTGCGAATACT+TGG | 0.405425 | 3_1:-993172 | Msa0342980:five_prime_UTR |
| GAATTGAATAGTTGGACCTT+AGG | 0.410293 | 3_1:+988584 | None:intergenic |
| ATGCATCTCAATGCCGCCGC+CGG | 0.412185 | 3_1:-989279 | Msa0342980:CDS |
| TCGCATTAGGATTGTGTAGA+TGG | 0.417229 | 3_1:+989500 | None:intergenic |
| ATAACTGATGAAGAATGTTT+TGG | 0.417678 | 3_1:+993140 | None:intergenic |
| TCTCATGCAAGAGAGAAAAC+TGG | 0.419918 | 3_1:-991545 | Msa0342980:five_prime_UTR |
| ATGCATACACAAGCGCTGAT+TGG | 0.422768 | 3_1:+990933 | None:intergenic |
| CAGCATTACTTGCCCGGCGG+CGG | 0.424812 | 3_1:+989266 | None:intergenic |
| CAGAGTCTCTTTGGAAGGCT+TGG | 0.425209 | 3_1:+990226 | None:intergenic |
| TTTCGTTTGCCATACTTTGA+AGG | 0.426623 | 3_1:-990368 | Msa0342980:five_prime_UTR |
| TTTCAGTAGGAAGAAAGAAA+TGG | 0.429433 | 3_1:+990414 | None:intergenic |
| CCCTTTCTTTGAAGGAGCAC+AGG | 0.430843 | 3_1:+990658 | None:intergenic |
| TATGTTTGGTTATTTGATCA+TGG | 0.433346 | 3_1:+992519 | None:intergenic |
| TCAGCAGGGTAATTCTCCTC+TGG | 0.435068 | 3_1:+991196 | None:intergenic |
| TGCATCTCAATGCCGCCGCC+GGG | 0.437980 | 3_1:-989278 | Msa0342980:CDS |
| TGAGACTTGAATTGAATAGT+TGG | 0.440051 | 3_1:+988576 | None:intergenic |
| CAATGACAACATTATCAAAC+AGG | 0.440162 | 3_1:+994153 | None:intergenic |
| CGGCGTAGCTTATCATTCTT+CGG | 0.441625 | 3_1:+990593 | None:intergenic |
| TGCATTCAGAGTCAAATTCC+TGG | 0.443063 | 3_1:+990962 | None:intergenic |
| CAATGTCAACATAGTCAAAC+AGG | 0.443613 | 3_1:-994483 | Msa0342980:five_prime_UTR |
| ATCATTATGTTTAGTGTTGG+AGG | 0.449050 | 3_1:+989642 | None:intergenic |
| AATCTATAAAAGAATTCAGC+AGG | 0.450271 | 3_1:+991923 | None:intergenic |
| TGCATACACAAGCGCTGATT+GGG | 0.451340 | 3_1:+990934 | None:intergenic |
| TAATCTTCTTATTACTCTCA+TGG | 0.454962 | 3_1:-993655 | Msa0342980:five_prime_UTR |
| TTCTTGATTTGAGAACAGTT+TGG | 0.456469 | 3_1:+989229 | None:intergenic |
| TTCAGGCCTAAAATACTTGA+CGG | 0.457367 | 3_1:+990896 | None:intergenic |
| ATCAAATTTACATACACAAA+AGG | 0.458620 | 3_1:+988704 | None:intergenic |
| AATTTGAATTGCTAGGAAGT+TGG | 0.460468 | 3_1:-995183 | Msa0342980:five_prime_UTR |
| AGAATTAGCCGCCTTTGGTA+AGG | 0.464266 | 3_1:+991630 | None:intergenic |
| TCAGCAGGGTAATTCTCATC+TGG | 0.465105 | 3_1:+991938 | None:intergenic |
| TGCCGTGAAGTGATAGTGTC+TGG | 0.465307 | 3_1:-989963 | Msa0342980:five_prime_UTR |
| CAAACTGAAACTGAGACTTC+TGG | 0.468204 | 3_1:+989566 | None:intergenic |
| AATATCATTATGTTTAGTGT+TGG | 0.474871 | 3_1:+989639 | None:intergenic |
| TAAATGATTTATTGTAGGAA+TGG | 0.475468 | 3_1:+993686 | None:intergenic |
| ATTTCAACATATTTGGTGGC+AGG | 0.477391 | 3_1:-993527 | Msa0342980:five_prime_UTR |
| ATTTCAACATATTTGGTGGC+AGG | 0.477391 | 3_1:+995111 | None:intergenic |
| ACCTGTGCTCCTTCAAAGAA+AGG | 0.478002 | 3_1:-990659 | Msa0342980:five_prime_UTR |
| ATTTGATTATGTATATACAT+AGG | 0.478607 | 3_1:-988688 | Msa0342980:three_prime_UTR |
| TAAATGATTGTTTGTAGCAA+TGG | 0.479509 | 3_1:+993874 | None:intergenic |
| TAAATGATTGTTTGTAGCAA+TGG | 0.479509 | 3_1:-994762 | Msa0342980:five_prime_UTR |
| AGGCAGAGTAGTATTTAGTC+AGG | 0.479801 | 3_1:-992829 | Msa0342980:five_prime_UTR |
| GATCTATAAGAGAATTCAGC+AGG | 0.480043 | 3_1:+991181 | None:intergenic |
| TCATCAAAGTTAATAAAACT+TGG | 0.482881 | 3_1:+988766 | None:intergenic |
| GGAGACTCCCAGGAAACTAT+TGG | 0.483016 | 3_1:+993551 | None:intergenic |
| GGAGACTCCCAGGAAACTAT+TGG | 0.483016 | 3_1:-995087 | Msa0342980:intron |
| AAGCGAGAAGATGCTTACTA+AGG | 0.483446 | 3_1:-993198 | Msa0342980:five_prime_UTR |
| TGAGGTGCATACACTTTGTC+AGG | 0.483949 | 3_1:-989765 | Msa0342980:intron |
| GATGACAGACAACAATTCAA+TGG | 0.488131 | 3_1:-992751 | Msa0342980:five_prime_UTR |
| ATGGCTCAGCATTACTTGCC+CGG | 0.490163 | 3_1:+989260 | None:intergenic |
| TCCAATTTCAACATATTTGG+TGG | 0.490994 | 3_1:-993531 | Msa0342980:five_prime_UTR |
| TCCAATTTCAACATATTTGG+TGG | 0.490994 | 3_1:+995107 | None:intergenic |
| GTTAATTAATTTGAATTGCT+AGG | 0.492777 | 3_1:-995190 | Msa0342980:five_prime_UTR |
| CCTGTGCTCCTTCAAAGAAA+GGG | 0.494532 | 3_1:-990658 | Msa0342980:five_prime_UTR |
| AAAGAAATGGTCATGTATGT+TGG | 0.496652 | 3_1:+990427 | None:intergenic |
| GGGAAAGATCTTGAAATACA+TGG | 0.496918 | 3_1:-992774 | Msa0342980:five_prime_UTR |
| TCCCAGACACTATCACTTCA+CGG | 0.498199 | 3_1:+989961 | None:intergenic |
| ACCGAAGAAAATATTGTCGT+TGG | 0.500600 | 3_1:-990455 | Msa0342980:five_prime_UTR |
| AAAATTCGGCCACGATTAAG+TGG | 0.502075 | 3_1:-995389 | Msa0342980:five_prime_UTR |
| AGTGGGATGAATGCAATAGA+TGG | 0.504930 | 3_1:-991762 | Msa0342980:five_prime_UTR |
| CATTATGTTTAGTGTTGGAG+GGG | 0.505283 | 3_1:+989644 | None:intergenic |
| GATCAACACACTTCAAAGAA+TGG | 0.512393 | 3_1:-989788 | Msa0342980:five_prime_UTR |
| GTGCAAAATTCGATTAAATG+AGG | 0.513828 | 3_1:-989185 | Msa0342980:CDS |
| CTCCAGGAATTGCAAAGACT+CGG | 0.514621 | 3_1:-989119 | Msa0342980:CDS |
| TCATTATGTTTAGTGTTGGA+GGG | 0.517970 | 3_1:+989643 | None:intergenic |
| TATATTGACGTTTGAAGAAG+AGG | 0.518605 | 3_1:-993498 | Msa0342980:five_prime_UTR |
| TGCTGTGAATGTATATTCAA+TGG | 0.520663 | 3_1:-988515 | Msa0342980:three_prime_UTR |
| CATCAATAGGAATTGGAAGC+TGG | 0.521522 | 3_1:+992685 | None:intergenic |
| AATCATCATAGAGGAATACT+TGG | 0.522130 | 3_1:+989528 | None:intergenic |
| TGTTGTGAATATATATTCAA+TGG | 0.522519 | 3_1:-988614 | Msa0342980:three_prime_UTR |
| GGCGGCTAATTCTGGTGCTA+AGG | 0.522544 | 3_1:-991620 | Msa0342980:five_prime_UTR |
| ATCACCAGAGTCTCTTTGGA+AGG | 0.522915 | 3_1:+990221 | None:intergenic |
| CGAAAAGTCTTATCTCTAAG+TGG | 0.523031 | 3_1:+991572 | None:intergenic |
| TCCAATTCCTATTGATGTAG+AGG | 0.524039 | 3_1:-992679 | Msa0342980:five_prime_UTR |
| GCCAAAATATATTGCCTACC+AGG | 0.524384 | 3_1:-990028 | Msa0342980:five_prime_UTR |
| GAATTAGCCGCCTTTGGTAA+GGG | 0.525892 | 3_1:+991631 | None:intergenic |
| CAGCAGGGTAATTCTCCTCT+GGG | 0.526093 | 3_1:+991197 | None:intergenic |
| GCACTGATTTCTGTTCTACA+TGG | 0.527594 | 3_1:+988892 | None:intergenic |
| CAAGCCTTCCAAAGAGACTC+TGG | 0.527624 | 3_1:-990225 | Msa0342980:five_prime_UTR |
| AAACTCACCAATAGTTTCCT+GGG | 0.528149 | 3_1:+995080 | None:intergenic |
| AGAAATTTCAGGAGTGTGAA+AGG | 0.528641 | 3_1:-989914 | Msa0342980:intron |
| ATGTTTGGTTATTTGATCAT+GGG | 0.532573 | 3_1:+992520 | None:intergenic |
| TGCAAAATTCGATTAAATGA+GGG | 0.532824 | 3_1:-989184 | Msa0342980:CDS |
| CTGCTGGTGTGGTAATGCTA+TGG | 0.533073 | 3_1:-990342 | Msa0342980:five_prime_UTR |
| GAAGAATTAAGCTATCAAGT+AGG | 0.533542 | 3_1:-993089 | Msa0342980:five_prime_UTR |
| GTTATCTGTTGACAACCAAC+TGG | 0.534094 | 3_1:-991990 | Msa0342980:five_prime_UTR |
| ATTCAATGGTTGAGAACCTA+AGG | 0.534499 | 3_1:-988600 | Msa0342980:three_prime_UTR |
| AGACATTAACAAACAAATTG+AGG | 0.534571 | 3_1:+993710 | None:intergenic |
| AGACATTAACAAACAAATTG+AGG | 0.534571 | 3_1:-994936 | Msa0342980:five_prime_UTR |
| AAACTCACCAATAGTTTCCT+GGG | 0.534969 | 3_1:-993558 | Msa0342980:five_prime_UTR |
| AGACATTAACAAACAGATTG+AGG | 0.535846 | 3_1:+993898 | None:intergenic |
| TATATTGACATTTGAAGAAG+AGG | 0.537375 | 3_1:+995140 | None:intergenic |
| CATGGACTGAATCAGCATCA+AGG | 0.538652 | 3_1:+994079 | None:intergenic |
| ACACTTCTCAACAAGTACTT+AGG | 0.539088 | 3_1:-994460 | Msa0342980:five_prime_UTR |
| TCAACTTCAATTTGGACTCG+TGG | 0.539110 | 3_1:-994045 | Msa0342980:five_prime_UTR |
| AATGTAGAATACCACGCTGC+AGG | 0.540083 | 3_1:-989096 | Msa0342980:intron |
| TTATACTAACTTCTCACTCC+AGG | 0.540435 | 3_1:-989135 | Msa0342980:CDS |
| TGTTGAAATTGGAGACTCCC+AGG | 0.540952 | 3_1:+993541 | None:intergenic |
| TGTTGAAATTGGAGACTCCC+AGG | 0.540952 | 3_1:-995097 | Msa0342980:five_prime_UTR |
| TCAACTTCAGTTTGGACTCG+TGG | 0.541203 | 3_1:+994591 | None:intergenic |
| ACAAATTCCTTCACATCAGA+AGG | 0.542860 | 3_1:+994527 | None:intergenic |
| AGGCATTAACAAACAGATTG+AGG | 0.543915 | 3_1:-994738 | Msa0342980:five_prime_UTR |
| AATTGGAAGCTGGCTTATGA+GGG | 0.545245 | 3_1:+992695 | None:intergenic |
| CTCATGCAAGAGAGAAAACT+GGG | 0.550984 | 3_1:-991544 | Msa0342980:five_prime_UTR |
| ACAAACTCCTTCACATCAGA+AGG | 0.559927 | 3_1:-994109 | Msa0342980:five_prime_UTR |
| GAAAGCGATGGAGCAATCGT+TGG | 0.563087 | 3_1:-988837 | Msa0342980:CDS |
| ATGGGTGGACAGATCAATCA+AGG | 0.563419 | 3_1:+992538 | None:intergenic |
| GCGTCTCAAATGCAAGAAGC+GGG | 0.563643 | 3_1:-993737 | Msa0342980:five_prime_UTR |
| GCGTCTCAAATGCAAGAAGC+GGG | 0.563643 | 3_1:+994909 | None:intergenic |
| AGCGAGAAGATGCTTACTAA+GGG | 0.568051 | 3_1:-993197 | Msa0342980:five_prime_UTR |
| ACTCTTACCTTCTGATGTGA+AGG | 0.572398 | 3_1:-994534 | Msa0342980:five_prime_UTR |
| TTCCAAACAATCTACTCTCA+AGG | 0.576903 | 3_1:+989614 | None:intergenic |
| CTCAAAAGATATCAGAGGAG+GGG | 0.578093 | 3_1:-992794 | Msa0342980:five_prime_UTR |
| TTTGGTTATTTGATCATGGG+TGG | 0.578504 | 3_1:+992523 | None:intergenic |
| AGCGTCTCAAATGCAAGAAG+CGG | 0.579572 | 3_1:+994710 | None:intergenic |
| TGATTGTTTGTAGCAATGGA+AGG | 0.581352 | 3_1:-994758 | Msa0342980:five_prime_UTR |
| AAATAGAACATTAAAGGACA+TGG | 0.581441 | 3_1:-990255 | Msa0342980:five_prime_UTR |
| CAAACGAAAAGCTGTCACCT+TGG | 0.585482 | 3_1:+990382 | None:intergenic |
| ACTCATACCTTCTGATGTGA+AGG | 0.585878 | 3_1:+994102 | None:intergenic |
| ACTGCTTCTTCACTGCCAGT+TGG | 0.587332 | 3_1:+991975 | None:intergenic |
| GAACAGTTTGGATGAGAGCA+TGG | 0.587828 | 3_1:+989241 | None:intergenic |
| GAATTTAATTCAACCAGGAG+GGG | 0.589658 | 3_1:-992644 | Msa0342980:five_prime_UTR |
| TGATAGTGTCTGGGAAGCGA+TGG | 0.590031 | 3_1:-989953 | Msa0342980:five_prime_UTR |
| AGCGTCTCAAATGCAAGAAG+CGG | 0.590962 | 3_1:-993738 | Msa0342980:five_prime_UTR |
| AGCGTCTCAAATGCAAGAAG+CGG | 0.590962 | 3_1:+994908 | None:intergenic |
| GTCAAGTGAAATTCAAATAG+GGG | 0.592157 | 3_1:-995295 | Msa0342980:five_prime_UTR |
| CAGAGTAGTATTTAGTCAGG+AGG | 0.592359 | 3_1:-992826 | Msa0342980:five_prime_UTR |
| GGAAAGATCTTGAAATACAT+GGG | 0.595735 | 3_1:-992773 | Msa0342980:five_prime_UTR |
| AGAATGATAAGCTACGCCGC+TGG | 0.596059 | 3_1:-990589 | Msa0342980:intron |
| CATACTTTGAAGGAGACTGC+TGG | 0.599995 | 3_1:-990358 | Msa0342980:five_prime_UTR |
| AAGTAGGATTCTCCACAGAC+TGG | 0.600517 | 3_1:-993073 | Msa0342980:five_prime_UTR |
| AGAGTAGTATTTAGTCAGGA+GGG | 0.603287 | 3_1:-992825 | Msa0342980:five_prime_UTR |
| ATATTGACATTTGAAGAAGA+GGG | 0.603801 | 3_1:+995141 | None:intergenic |
| GATGTTGAACAGGACATACA+AGG | 0.607215 | 3_1:-992849 | Msa0342980:intron |
| TGCTCAAAAGATATCAGAGG+AGG | 0.607660 | 3_1:-992796 | Msa0342980:five_prime_UTR |
| GGAATTTAATTCAACCAGGA+GGG | 0.607699 | 3_1:-992645 | Msa0342980:five_prime_UTR |
| CTGTGCTCCTTCAAAGAAAG+GGG | 0.607767 | 3_1:-990657 | Msa0342980:five_prime_UTR |
| TAAGAAACTAAACGCAAAGT+GGG | 0.608367 | 3_1:-993614 | Msa0342980:five_prime_UTR |
| ATATTGACGTTTGAAGAAGA+GGG | 0.608573 | 3_1:-993497 | Msa0342980:intron |
| AGAATGATACCGCCAGTCTG+TGG | 0.610785 | 3_1:+993061 | None:intergenic |
| AATATTGCAAGTGAGCTATG+AGG | 0.614269 | 3_1:+989997 | None:intergenic |
| GCTCAAAAGATATCAGAGGA+GGG | 0.621747 | 3_1:-992795 | Msa0342980:five_prime_UTR |
| TTAAGAAACTAAACGCAAAG+TGG | 0.628224 | 3_1:-993615 | Msa0342980:five_prime_UTR |
| CATGGTAAACGAAGGTACGA+AGG | 0.628852 | 3_1:+990850 | None:intergenic |
| AATAGAACATTAAAGGACAT+GGG | 0.630593 | 3_1:-990254 | Msa0342980:five_prime_UTR |
| GCATGTTCCCTTACCAAAGG+CGG | 0.630753 | 3_1:-991638 | Msa0342980:five_prime_UTR |
| ATGGTAAACGAAGGTACGAA+GGG | 0.635264 | 3_1:+990851 | None:intergenic |
| AATTCAATGGAAATTGACAT+CGG | 0.636320 | 3_1:-992738 | Msa0342980:five_prime_UTR |
| TTTGAAGGAGACTGCTGGTG+TGG | 0.637044 | 3_1:-990353 | Msa0342980:five_prime_UTR |
| CCTGAAAGAAGGACAAAGTG+TGG | 0.639771 | 3_1:-990879 | Msa0342980:five_prime_UTR |
| GCCGTGAAGTGATAGTGTCT+GGG | 0.641094 | 3_1:-989962 | Msa0342980:five_prime_UTR |
| GAAACTAAACGCAAAGTGGG+AGG | 0.641967 | 3_1:-993611 | Msa0342980:five_prime_UTR |
| ACTCGTGGTTAGATACAAGA+TGG | 0.648760 | 3_1:-994030 | Msa0342980:five_prime_UTR |
| ACTCGTGGTTAGATACAAGA+TGG | 0.648760 | 3_1:+994606 | None:intergenic |
| AGACGGAATTTAATTCAACC+AGG | 0.650506 | 3_1:-992649 | Msa0342980:five_prime_UTR |
| AATGCATGTTCCCTTACCAA+AGG | 0.654704 | 3_1:-991641 | Msa0342980:five_prime_UTR |
| ATCTATAAAAGAATTCAGCA+GGG | 0.660921 | 3_1:+991924 | None:intergenic |
| GATGTAGAGGACAAACAAGA+CGG | 0.661675 | 3_1:-992666 | Msa0342980:five_prime_UTR |
| AGGTGGTGTACTAACCTGAA+CGG | 0.662393 | 3_1:+992475 | None:intergenic |
| AGTTGCTCAAAAGATATCAG+AGG | 0.663126 | 3_1:-992799 | Msa0342980:five_prime_UTR |
| CGGAATTTAATTCAACCAGG+AGG | 0.663652 | 3_1:-992646 | Msa0342980:five_prime_UTR |
| CAATATCTCATGGTAAACGA+AGG | 0.666016 | 3_1:+990842 | None:intergenic |
| AGGGAATGAGAATCTTGATG+AGG | 0.666581 | 3_1:-991511 | Msa0342980:intron |
| TAGGATTCTCCACAGACTGG+CGG | 0.666878 | 3_1:-993070 | Msa0342980:five_prime_UTR |
| TAGAGGAATACTTGGCACGA+CGG | 0.668087 | 3_1:+989536 | None:intergenic |
| GGTTAGATACAAGATGGTCA+AGG | 0.669020 | 3_1:-994024 | Msa0342980:five_prime_UTR |
| GGTTAGATACAAGATGGTCA+AGG | 0.669020 | 3_1:+994612 | None:intergenic |
| ATCTATAAGAGAATTCAGCA+GGG | 0.680316 | 3_1:+991182 | None:intergenic |
| CATTAACAAACAAATTGAGG+AGG | 0.682556 | 3_1:+993713 | None:intergenic |
| CATTAACAAACAAATTGAGG+AGG | 0.682556 | 3_1:-994933 | Msa0342980:five_prime_UTR |
| GGAGGGGATATCATCAACAA+CGG | 0.699125 | 3_1:+989660 | None:intergenic |
| ACACACTTCAAAGAATGGTG+AGG | 0.703040 | 3_1:-989783 | Msa0342980:five_prime_UTR |
| ACACTTCTCAACAAGTACCA+AGG | 0.704084 | 3_1:+994176 | None:intergenic |
| GCTATAACATTGTTGCGTAG+CGG | 0.708661 | 3_1:-995435 | Msa0342980:five_prime_UTR |
| GCTCAGCATTACTTGCCCGG+CGG | 0.716635 | 3_1:+989263 | None:intergenic |
| AGCGCTATACCACTTAATCG+TGG | 0.730941 | 3_1:+995380 | None:intergenic |
| ATGGTAGAGAATCATCATAG+AGG | 0.733865 | 3_1:+989519 | None:intergenic |
| ATTGTAACACACCTGCAGCG+TGG | 0.738381 | 3_1:+989085 | None:intergenic |
| GTTTCTGGACATCATCCCAG+AGG | 0.751856 | 3_1:-991212 | Msa0342980:five_prime_UTR |
| CATGGACTGAATCAACATCG+AGG | 0.754681 | 3_1:-994557 | Msa0342980:five_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAAAAGATCAATAATTTTAA+GGG | + | chr3_1:992569-992588 | None:intergenic | 10.0% |
| !! | AAACAAACAATATAAAAATA+AGG | + | chr3_1:993438-993457 | None:intergenic | 10.0% |
| !! | TATAGATGATTGTTAAAATT+CGG | - | chr3_1:988541-988560 | Msa0342980:three_prime_UTR | 15.0% |
| !! | ATCAAATTAATAAACAATTC+AGG | + | chr3_1:988727-988746 | None:intergenic | 15.0% |
| !!! | TTTTTCTTCTCTAAATTTTA+AGG | - | chr3_1:988889-988908 | Msa0342980:CDS | 15.0% |
| !! | GATTATAAATGATTTATTGT+AGG | - | chr3_1:988979-988998 | Msa0342980:intron | 15.0% |
| !!! | AACATCATTTATTTTATTTG+AGG | + | chr3_1:991382-991401 | None:intergenic | 15.0% |
| !!! | TTCTTTTTAAATAACATACT+AGG | + | chr3_1:991848-991867 | None:intergenic | 15.0% |
| !!! | GAAAAAGATCAATAATTTTA+AGG | + | chr3_1:992570-992589 | None:intergenic | 15.0% |
| !!! | GTTCATTTTATTAGTTTTAT+TGG | + | chr3_1:993157-993176 | None:intergenic | 15.0% |
| !! | ATTTGATTATGTATATACAT+AGG | - | chr3_1:995256-995275 | Msa0342980:five_prime_UTR | 15.0% |
| !!! | TTTTAAGAGAATGAATAATA+AGG | + | chr3_1:995292-995311 | None:intergenic | 15.0% |
| !!! | GTTAATTAATTTGAATTGCT+AGG | - | chr3_1:988754-988773 | Msa0342980:three_prime_UTR | 20.0% |
| !! | TAAATGATTTATTGTAGGAA+TGG | - | chr3_1:988984-989003 | Msa0342980:intron | 20.0% |
| !! | TAAATGATTTATTGTAGGAA+TGG | + | chr3_1:988984-989003 | None:intergenic | 20.0% |
| !! | GTGAATAAATGATTTATTGT+AGG | + | chr3_1:990266-990285 | None:intergenic | 20.0% |
| !!! | TTTTTCTTCTCTGAATTTTA+AGG | + | chr3_1:990364-990383 | None:intergenic | 20.0% |
| !! | TTAATTCAAATAGTGAATCA+TGG | - | chr3_1:990502-990521 | Msa0342980:intron | 20.0% |
| !!! | TTTTTCTTCTTATCCAATTA+CGG | + | chr3_1:990923-990942 | None:intergenic | 20.0% |
| !!! | ATTTATTTTATTTGAGGATG+TGG | + | chr3_1:991376-991395 | None:intergenic | 20.0% |
| !! | ATCAATGTATTTAAAAACAC+AGG | + | chr3_1:991496-991515 | None:intergenic | 20.0% |
| !! | TTAAATACATTGATCTGTTT+AGG | - | chr3_1:991502-991521 | Msa0342980:intron | 20.0% |
| !! | TTTAAATAACATACTAGGAA+GGG | + | chr3_1:991843-991862 | None:intergenic | 20.0% |
| !!! | TTTTAAATAACATACTAGGA+AGG | + | chr3_1:991844-991863 | None:intergenic | 20.0% |
| !!! | TTCCATTTTCAATTTCTTTT+TGG | + | chr3_1:992285-992304 | None:intergenic | 20.0% |
| !! | TTTATATTGTTTGTTTATGC+AGG | - | chr3_1:993442-993461 | Msa0342980:intron | 20.0% |
| !! | TTCATTTACTCAAGTATAAA+AGG | + | chr3_1:993788-993807 | None:intergenic | 20.0% |
| !!! | AACTTAAACTAGTCTATAAT+AGG | + | chr3_1:993824-993843 | None:intergenic | 20.0% |
| !!! | TAGCATTGAATGAAATAAAA+AGG | - | chr3_1:994085-994104 | Msa0342980:five_prime_UTR | 20.0% |
| !!! | AGCATTGAATGAAATAAAAA+GGG | - | chr3_1:994086-994105 | Msa0342980:five_prime_UTR | 20.0% |
| !! | AATATCATTATGTTTAGTGT+TGG | + | chr3_1:994308-994327 | None:intergenic | 20.0% |
| !!! | AAAACAGAGTCATTTTTTTT+TGG | - | chr3_1:994971-994990 | Msa0342980:intron | 20.0% |
| !! | ATATATTCACAAAGATTCAT+TGG | + | chr3_1:995133-995152 | None:intergenic | 20.0% |
| !! | TCATCAAAGTTAATAAAACT+TGG | + | chr3_1:995181-995200 | None:intergenic | 20.0% |
| !! | ATCAAATTTACATACACAAA+AGG | + | chr3_1:995243-995262 | None:intergenic | 20.0% |
| !! | TGTTGTGAATATATATTCAA+TGG | - | chr3_1:995330-995349 | Msa0342980:five_prime_UTR | 20.0% |
| !!! | ATGTTACGATTTAACTTTTC+TGG | - | chr3_1:988627-988646 | Msa0342980:three_prime_UTR | 25.0% |
| ! | ATATTGACATTTGAAGAAGA+GGG | + | chr3_1:988806-988825 | None:intergenic | 25.0% |
| ! | TATATTGACATTTGAAGAAG+AGG | + | chr3_1:988807-988826 | None:intergenic | 25.0% |
| ! | TAATCTTCTTATTACTCTCA+TGG | + | chr3_1:990289-990308 | None:intergenic | 25.0% |
| ! | AGACATTAACAAACAAATTG+AGG | - | chr3_1:989008-989027 | Msa0342980:intron | 25.0% |
| !! | TTCTTGAAGTAAAGTTCTAA+TGG | + | chr3_1:989972-989991 | None:intergenic | 25.0% |
| ! | TAAATGATTGTTTGTAGCAA+TGG | - | chr3_1:989182-989201 | Msa0342980:CDS | 25.0% |
| !! | TTCTTGAAGTAAAGTTCTAA+TGG | + | chr3_1:989972-989991 | None:intergenic | 25.0% |
| !!! | AAGTTGATTTCTCTTTTTCA+TGG | - | chr3_1:989369-989388 | Msa0342980:intron | 25.0% |
| !!! | AAGTTGATTTCTCTTTTTCA+TGG | + | chr3_1:989369-989388 | None:intergenic | 25.0% |
| ! | AAGAGAAATCAACTTCAATT+TGG | - | chr3_1:989891-989910 | Msa0342980:intron | 25.0% |
| ! | TAAATGATTGTTTGTAGCAA+TGG | + | chr3_1:989182-989201 | None:intergenic | 25.0% |
| !! | TTCTTGAAGTAAAGTTCTAA+TGG | - | chr3_1:989972-989991 | Msa0342980:five_prime_UTR | 25.0% |
| ! | AGACATTAACAAACAAATTG+AGG | + | chr3_1:989008-989027 | None:intergenic | 25.0% |
| ! | TAATCTTCTTATTACTCTCA+TGG | - | chr3_1:990289-990308 | Msa0342980:five_prime_UTR | 25.0% |
| !! | TTTCCCTCTTTATTAGTTTA+TGG | - | chr3_1:990639-990658 | Msa0342980:five_prime_UTR | 25.0% |
| !! | TATTTGTTGATTGTTTCTTG+TGG | - | chr3_1:990697-990716 | Msa0342980:five_prime_UTR | 25.0% |
| !! | ATAACTGATGAAGAATGTTT+TGG | + | chr3_1:990807-990826 | None:intergenic | 25.0% |
| ! | AATAGCAATATTTCCACAAT+AGG | + | chr3_1:991017-991036 | None:intergenic | 25.0% |
| ! | AATTCAATGGAAATTGACAT+CGG | - | chr3_1:991206-991225 | Msa0342980:five_prime_UTR | 25.0% |
| ! | ATGTTTGGTTATTTGATCAT+GGG | + | chr3_1:991427-991446 | None:intergenic | 25.0% |
| ! | TATGTTTGGTTATTTGATCA+TGG | + | chr3_1:991428-991447 | None:intergenic | 25.0% |
| ! | TTTCAGACTTCAAATATGTT+TGG | + | chr3_1:991442-991461 | None:intergenic | 25.0% |
| ! | ATGTATTTAAAAACACAGGA+AGG | + | chr3_1:991492-991511 | None:intergenic | 25.0% |
| ! | AATCAAATGCTTAAAAGAAG+AGG | + | chr3_1:991538-991557 | None:intergenic | 25.0% |
| ! | AATTCATGTTTGTAAGCATT+TGG | - | chr3_1:991564-991583 | Msa0342980:five_prime_UTR | 25.0% |
| !! | AAGCATTTGGTTTATAACAT+AGG | - | chr3_1:991610-991629 | Msa0342980:five_prime_UTR | 25.0% |
| !!! | AAAAAGTGTCAACTTGTATA+TGG | + | chr3_1:991671-991690 | None:intergenic | 25.0% |
| ! | AATTTCAGACTACTATTGAT+CGG | + | chr3_1:991794-991813 | None:intergenic | 25.0% |
| ! | ATCTATAAAAGAATTCAGCA+GGG | + | chr3_1:992023-992042 | None:intergenic | 25.0% |
| ! | AATCTATAAAAGAATTCAGC+AGG | + | chr3_1:992024-992043 | None:intergenic | 25.0% |
| !! | CATTTTCAATTTCTTTTTGG+TGG | + | chr3_1:992282-992301 | None:intergenic | 25.0% |
| ! | CACCAAAAAGAAATTGAAAA+TGG | - | chr3_1:992280-992299 | Msa0342980:intron | 25.0% |
| !!! | TCAATAATTTTAAGGGAACA+TGG | + | chr3_1:992562-992581 | None:intergenic | 25.0% |
| ! | GTGGTTTATCAATGAATAAA+TGG | - | chr3_1:992799-992818 | Msa0342980:five_prime_UTR | 25.0% |
| ! | GAGAACTTCTATTAAATGTT+TGG | + | chr3_1:992893-992912 | None:intergenic | 25.0% |
| ! | AGAAAAATACCAATATCTCA+TGG | + | chr3_1:993115-993134 | None:intergenic | 25.0% |
| ! | TAAAGCATAAAAAGAGAGAA+TGG | + | chr3_1:993191-993210 | None:intergenic | 25.0% |
| !! | ACCTTGATTTTTGTAACAAA+AGG | - | chr3_1:993238-993257 | Msa0342980:intron | 25.0% |
| !! | CCTTGATTTTTGTAACAAAA+GGG | - | chr3_1:993239-993258 | Msa0342980:intron | 25.0% |
| !! | CTTGATTTTTGTAACAAAAG+GGG | - | chr3_1:993240-993259 | Msa0342980:intron | 25.0% |
| ! | AGTGTCAAATAGAACATTAA+AGG | - | chr3_1:993683-993702 | Msa0342980:five_prime_UTR | 25.0% |
| ! | AAATAGAACATTAAAGGACA+TGG | - | chr3_1:993689-993708 | Msa0342980:five_prime_UTR | 25.0% |
| ! | AATAGAACATTAAAGGACAT+GGG | - | chr3_1:993690-993709 | Msa0342980:five_prime_UTR | 25.0% |
| ! | TATAAAAGGATATATCCCAT+TGG | + | chr3_1:993774-993793 | None:intergenic | 25.0% |
| !! | AAATGAAAAACTTCAGGTTT+AGG | + | chr3_1:994211-994230 | None:intergenic | 25.0% |
| ! | CATATGAAATGAAAAACTTC+AGG | + | chr3_1:994217-994236 | None:intergenic | 25.0% |
| !! | TATAATTGTGTAACGTTTTC+AGG | - | chr3_1:994261-994280 | Msa0342980:intron | 25.0% |
| ! | TGCAAAATTCGATTAAATGA+GGG | - | chr3_1:994760-994779 | Msa0342980:five_prime_UTR | 25.0% |
| ! | ATAGAATATCGAAATTCTCT+AGG | + | chr3_1:994900-994919 | None:intergenic | 25.0% |
| TGGTCAAGTGAAATTCAAAT+AGG | - | chr3_1:988647-988666 | Msa0342980:three_prime_UTR | 30.0% | |
| GGTCAAGTGAAATTCAAATA+GGG | - | chr3_1:988648-988667 | Msa0342980:three_prime_UTR | 30.0% | |
| GTCAAGTGAAATTCAAATAG+GGG | - | chr3_1:988649-988668 | Msa0342980:three_prime_UTR | 30.0% | |
| AATTTGAATTGCTAGGAAGT+TGG | - | chr3_1:988761-988780 | Msa0342980:three_prime_UTR | 30.0% | |
| TCCAATTTCAACATATTTGG+TGG | + | chr3_1:990413-990432 | None:intergenic | 30.0% | |
| GTCTCCAATTTCAACATATT+TGG | + | chr3_1:990410-990429 | None:intergenic | 30.0% | |
| GAAACTAAATGCAAAGTGAT+AGG | + | chr3_1:988920-988939 | None:intergenic | 30.0% | |
| CATTAACAAACAAATTGAGG+AGG | - | chr3_1:989011-989030 | Msa0342980:intron | 30.0% | |
| TCAAGAATTGAAGACTTTGA+TGG | - | chr3_1:989098-989117 | Msa0342980:CDS | 30.0% | |
| TCAAGAATTGAAGACTTTGA+TGG | - | chr3_1:989098-989117 | Msa0342980:CDS | 30.0% | |
| AAGAGAAATCAACTTCAGTT+TGG | + | chr3_1:989364-989383 | None:intergenic | 30.0% | |
| TGAAGATTCACTGTCAATTT+GGG | + | chr3_1:989580-989599 | None:intergenic | 30.0% | |
| TTGAAGATTCACTGTCAATT+TGG | + | chr3_1:989581-989600 | None:intergenic | 30.0% | |
| CAATGACAACATTATCAAAC+AGG | + | chr3_1:989794-989813 | None:intergenic | 30.0% | |
| TCAAGAATTGAAGACTTTGA+TGG | + | chr3_1:989098-989117 | None:intergenic | 30.0% | |
| AGACATTAACAAACAGATTG+AGG | + | chr3_1:990049-990068 | None:intergenic | 30.0% | |
| TCAAGAATTGAAGACTTTGA+TGG | + | chr3_1:989098-989117 | None:intergenic | 30.0% | |
| CATTAACAAACAAATTGAGG+AGG | + | chr3_1:989011-989030 | None:intergenic | 30.0% | |
| TTAAGAAACTAAACGCAAAG+TGG | - | chr3_1:990329-990348 | Msa0342980:five_prime_UTR | 30.0% | |
| TAAGAAACTAAACGCAAAGT+GGG | - | chr3_1:990330-990349 | Msa0342980:five_prime_UTR | 30.0% | |
| GTCTCCAATTTCAACATATT+TGG | - | chr3_1:990410-990429 | Msa0342980:five_prime_UTR | 30.0% | |
| TCCAATTTCAACATATTTGG+TGG | - | chr3_1:990413-990432 | Msa0342980:five_prime_UTR | 30.0% | |
| TATATTGACGTTTGAAGAAG+AGG | - | chr3_1:990446-990465 | Msa0342980:five_prime_UTR | 30.0% | |
| ATATTGACGTTTGAAGAAGA+GGG | - | chr3_1:990447-990466 | Msa0342980:five_prime_UTR | 30.0% | |
| ! | TTTCTGATTGCTGTTCAAAT+TGG | - | chr3_1:990562-990581 | Msa0342980:intron | 30.0% |
| GTGCCATAAACTAATAAAGA+GGG | + | chr3_1:990645-990664 | None:intergenic | 30.0% | |
| TGTGCCATAAACTAATAAAG+AGG | + | chr3_1:990646-990665 | None:intergenic | 30.0% | |
| CTTACTAAGGGTTGTTATAT+TGG | - | chr3_1:990759-990778 | Msa0342980:intron | 30.0% | |
| GAAGAATTAAGCTATCAAGT+AGG | - | chr3_1:990855-990874 | Msa0342980:five_prime_UTR | 30.0% | |
| AAATTGTGTACAACCGTAAT+TGG | - | chr3_1:990907-990926 | Msa0342980:five_prime_UTR | 30.0% | |
| !! | TATTGATGATGATGTTGAAC+AGG | - | chr3_1:991085-991104 | Msa0342980:intron | 30.0% |
| GGAAAGATCTTGAAATACAT+GGG | - | chr3_1:991171-991190 | Msa0342980:intron | 30.0% | |
| TATTTAAAAACACAGGAAGG+TGG | + | chr3_1:991489-991508 | None:intergenic | 30.0% | |
| ATTCATGTTGTCTAAGCATT+TGG | - | chr3_1:991597-991616 | Msa0342980:five_prime_UTR | 30.0% | |
| ! | TTTTTAACAGAGTTCAACTG+CGG | - | chr3_1:991691-991710 | Msa0342980:five_prime_UTR | 30.0% |
| CGGACTGATAGTTATATAAA+AGG | + | chr3_1:991774-991793 | None:intergenic | 30.0% | |
| AATAGAGTAGACATCAAACT+TGG | + | chr3_1:992077-992096 | None:intergenic | 30.0% | |
| !!! | ATGACTGTTTTTTCTTCTAG+TGG | - | chr3_1:992164-992183 | Msa0342980:intron | 30.0% |
| !!! | TGACTGTTTTTTCTTCTAGT+GGG | - | chr3_1:992165-992184 | Msa0342980:intron | 30.0% |
| AAAACTGGGAAAAAGTTGAA+GGG | - | chr3_1:992414-992433 | Msa0342980:intron | 30.0% | |
| ATCTATAAGAGAATTCAGCA+GGG | + | chr3_1:992765-992784 | None:intergenic | 30.0% | |
| ATAGAAGTTCTCTTGATTTC+AGG | - | chr3_1:992901-992920 | Msa0342980:intron | 30.0% | |
| ! | TTGATTCCGTCAAGTATTTT+AGG | - | chr3_1:993042-993061 | Msa0342980:five_prime_UTR | 30.0% |
| ! | CCCTTTTGTTACAAAAATCA+AGG | + | chr3_1:993242-993261 | None:intergenic | 30.0% |
| ! | ACCAACGACAATATTTTCTT+CGG | + | chr3_1:993493-993512 | None:intergenic | 30.0% |
| AAAGAAATGGTCATGTATGT+TGG | + | chr3_1:993520-993539 | None:intergenic | 30.0% | |
| TTTCAGTAGGAAGAAAGAAA+TGG | + | chr3_1:993533-993552 | None:intergenic | 30.0% | |
| TTCTTTCTTCCTACTGAAAA+AGG | - | chr3_1:993534-993553 | Msa0342980:five_prime_UTR | 30.0% | |
| TCTTTCTTCCTACTGAAAAA+GGG | - | chr3_1:993535-993554 | Msa0342980:five_prime_UTR | 30.0% | |
| ! | AAGTGTGTTGATCATAACTA+TGG | + | chr3_1:994149-994168 | None:intergenic | 30.0% |
| ! | TCATTATGTTTAGTGTTGGA+GGG | + | chr3_1:994304-994323 | None:intergenic | 30.0% |
| ! | ATCATTATGTTTAGTGTTGG+AGG | + | chr3_1:994305-994324 | None:intergenic | 30.0% |
| AGAGTAGATTGTTTGGAAAT+AGG | - | chr3_1:994335-994354 | Msa0342980:intron | 30.0% | |
| GAGTAGATTGTTTGGAAATA+GGG | - | chr3_1:994336-994355 | Msa0342980:intron | 30.0% | |
| AATCATCATAGAGGAATACT+TGG | + | chr3_1:994419-994438 | None:intergenic | 30.0% | |
| !!! | TTGAACAGTTTTGAGTTAAC+TGG | + | chr3_1:994486-994505 | None:intergenic | 30.0% |
| ! | TATGATCAACAATCTAGCTT+AGG | + | chr3_1:994598-994617 | None:intergenic | 30.0% |
| ! | TTCTTGATTTGAGAACAGTT+TGG | + | chr3_1:994718-994737 | None:intergenic | 30.0% |
| ! | TAATCGAATTTTGCACTTAC+TGG | + | chr3_1:994755-994774 | None:intergenic | 30.0% |
| GTGCAAAATTCGATTAAATG+AGG | - | chr3_1:994759-994778 | Msa0342980:five_prime_UTR | 30.0% | |
| ! | ACCATATCTTTTTACAATGC+TGG | + | chr3_1:994789-994808 | None:intergenic | 30.0% |
| TGAGACTTGAATTGAATAGT+TGG | + | chr3_1:995371-995390 | None:intergenic | 30.0% | |
| TGCTGTGAATGTATATTCAA+TGG | - | chr3_1:995429-995448 | Msa0342980:five_prime_UTR | 30.0% | |
| ! | ATTTCAACATATTTGGTGGC+AGG | + | chr3_1:990417-990436 | None:intergenic | 35.0% |
| GCCACCAAATATGTTGAAAT+TGG | - | chr3_1:988836-988855 | Msa0342980:CDS | 35.0% | |
| AAACTCACCAATAGTTTCCT+GGG | + | chr3_1:990386-990405 | None:intergenic | 35.0% | |
| AAAACTCACCAATAGTTTCC+TGG | + | chr3_1:988868-988887 | None:intergenic | 35.0% | |
| TGATTGTTTGTAGCAATGGA+AGG | - | chr3_1:989186-989205 | Msa0342980:CDS | 35.0% | |
| AGGCATTAACAAACAGATTG+AGG | - | chr3_1:989206-989225 | Msa0342980:CDS | 35.0% | |
| ACAAATTCCTTCACATCAGA+AGG | + | chr3_1:989420-989439 | None:intergenic | 35.0% | |
| CAATGTCAACATAGTCAAAC+AGG | - | chr3_1:989461-989480 | Msa0342980:five_prime_UTR | 35.0% | |
| ACACTTCTCAACAAGTACTT+AGG | - | chr3_1:989484-989503 | Msa0342980:five_prime_UTR | 35.0% | |
| ! | CAGTTTTCGAATCAAGAAGT+TGG | + | chr3_1:989518-989537 | None:intergenic | 35.0% |
| ! | CTGATCTTTTGAACAAGCTT+AGG | - | chr3_1:989535-989554 | Msa0342980:five_prime_UTR | 35.0% |
| GAACAAATGTGATGTTCAGA+AGG | - | chr3_1:989680-989699 | Msa0342980:intron | 35.0% | |
| AAACTCACCAATAGTTTCCT+GGG | - | chr3_1:990386-990405 | Msa0342980:five_prime_UTR | 35.0% | |
| GCCACCAAATATGTTGAAAT+TGG | + | chr3_1:988836-988855 | None:intergenic | 35.0% | |
| ! | ATTTCAACATATTTGGTGGC+AGG | - | chr3_1:990417-990436 | Msa0342980:five_prime_UTR | 35.0% |
| GTTATATTGGTGCGAATACT+TGG | - | chr3_1:990772-990791 | Msa0342980:intron | 35.0% | |
| TCTTCAAAACATCTCTTTCG+TGG | + | chr3_1:990840-990859 | None:intergenic | 35.0% | |
| AGAGTAGTATTTAGTCAGGA+GGG | - | chr3_1:991119-991138 | Msa0342980:intron | 35.0% | |
| AGTTGCTCAAAAGATATCAG+AGG | - | chr3_1:991145-991164 | Msa0342980:intron | 35.0% | |
| GGGAAAGATCTTGAAATACA+TGG | - | chr3_1:991170-991189 | Msa0342980:intron | 35.0% | |
| GATGACAGACAACAATTCAA+TGG | - | chr3_1:991193-991212 | Msa0342980:five_prime_UTR | 35.0% | |
| TCCAATTCCTATTGATGTAG+AGG | - | chr3_1:991265-991284 | Msa0342980:five_prime_UTR | 35.0% | |
| TCCTCTACATCAATAGGAAT+TGG | + | chr3_1:991269-991288 | None:intergenic | 35.0% | |
| TGTTTGTCCTCTACATCAAT+AGG | + | chr3_1:991275-991294 | None:intergenic | 35.0% | |
| AGACGGAATTTAATTCAACC+AGG | - | chr3_1:991295-991314 | Msa0342980:intron | 35.0% | |
| GGAATTTAATTCAACCAGGA+GGG | - | chr3_1:991299-991318 | Msa0342980:intron | 35.0% | |
| GAATTTAATTCAACCAGGAG+GGG | - | chr3_1:991300-991319 | Msa0342980:intron | 35.0% | |
| !!! | TGCTTCTGTTGATTAGCTTT+TGG | + | chr3_1:991351-991370 | None:intergenic | 35.0% |
| TTTGGTTATTTGATCATGGG+TGG | + | chr3_1:991424-991443 | None:intergenic | 35.0% | |
| ACATTGATCTGTTTAGGCAT+TGG | - | chr3_1:991508-991527 | Msa0342980:intron | 35.0% | |
| ! | TTTTAACAGAGTTCAACTGC+GGG | - | chr3_1:991692-991711 | Msa0342980:five_prime_UTR | 35.0% |
| ! | CGAAAAGTCTTATCTCTAAG+TGG | + | chr3_1:992375-992394 | None:intergenic | 35.0% |
| GAAAACTGGGAAAAAGTTGA+AGG | - | chr3_1:992413-992432 | Msa0342980:intron | 35.0% | |
| !! | TAATTTTAAGGGAACATGGC+AGG | + | chr3_1:992558-992577 | None:intergenic | 35.0% |
| TCGAATTACTGCAAAATTGC+AGG | - | chr3_1:992639-992658 | Msa0342980:five_prime_UTR | 35.0% | |
| GAAAGTGAATAAGCAGTTTC+TGG | - | chr3_1:992717-992736 | Msa0342980:five_prime_UTR | 35.0% | |
| GATCTATAAGAGAATTCAGC+AGG | + | chr3_1:992766-992785 | None:intergenic | 35.0% | |
| TAGATCAAGAGTAAGTTCAG+TGG | - | chr3_1:992780-992799 | Msa0342980:five_prime_UTR | 35.0% | |
| ! | TTTAGTTCAGAAGAAGCAAC+TGG | + | chr3_1:992833-992852 | None:intergenic | 35.0% |
| CTTCTGTTTAAGCTGATTGA+AGG | - | chr3_1:992929-992948 | Msa0342980:intron | 35.0% | |
| TTCAGGCCTAAAATACTTGA+CGG | + | chr3_1:993051-993070 | None:intergenic | 35.0% | |
| !! | AGTATTTTAGGCCTGAAAGA+AGG | - | chr3_1:993054-993073 | Msa0342980:five_prime_UTR | 35.0% |
| CAATATCTCATGGTAAACGA+AGG | + | chr3_1:993105-993124 | None:intergenic | 35.0% | |
| CTTCGTTTACCATGAGATAT+TGG | - | chr3_1:993103-993122 | Msa0342980:five_prime_UTR | 35.0% | |
| !! | GTTTCTCAACTTGCTACATA+TGG | - | chr3_1:993262-993281 | Msa0342980:intron | 35.0% |
| TAATCATCCCCTTTCTTTGA+AGG | + | chr3_1:993297-993316 | None:intergenic | 35.0% | |
| ACCGAAGAAAATATTGTCGT+TGG | - | chr3_1:993489-993508 | Msa0342980:intron | 35.0% | |
| TTTCGTTTGCCATACTTTGA+AGG | - | chr3_1:993576-993595 | Msa0342980:five_prime_UTR | 35.0% | |
| ATGTCTATCTTGTCATCCAA+TGG | - | chr3_1:993755-993774 | Msa0342980:five_prime_UTR | 35.0% | |
| TGTCTATCTTGTCATCCAAT+GGG | - | chr3_1:993756-993775 | Msa0342980:five_prime_UTR | 35.0% | |
| AAGTTAGGGGGAAAAAGAAA+AGG | + | chr3_1:993885-993904 | None:intergenic | 35.0% | |
| ! | TTTTCCCCCTAACTTCTATT+AGG | - | chr3_1:993890-993909 | Msa0342980:five_prime_UTR | 35.0% |
| ! | TCCTGGTAGGCAATATATTT+TGG | + | chr3_1:993920-993939 | None:intergenic | 35.0% |
| !!! | ATGAGGAATTTTTTCCTGGT+AGG | + | chr3_1:993933-993952 | None:intergenic | 35.0% |
| !!! | AGCTATGAGGAATTTTTTCC+TGG | + | chr3_1:993937-993956 | None:intergenic | 35.0% |
| AATATTGCAAGTGAGCTATG+AGG | + | chr3_1:993950-993969 | None:intergenic | 35.0% | |
| CACTGAATGCAAGAAATTTC+AGG | - | chr3_1:994019-994038 | Msa0342980:five_prime_UTR | 35.0% | |
| ! | AGAAATTTCAGGAGTGTGAA+AGG | - | chr3_1:994030-994049 | Msa0342980:five_prime_UTR | 35.0% |
| GATCAACACACTTCAAAGAA+TGG | - | chr3_1:994156-994175 | Msa0342980:five_prime_UTR | 35.0% | |
| ! | CATTATGTTTAGTGTTGGAG+GGG | + | chr3_1:994303-994322 | None:intergenic | 35.0% |
| TTCCAAACAATCTACTCTCA+AGG | + | chr3_1:994333-994352 | None:intergenic | 35.0% | |
| ATGGTAGAGAATCATCATAG+AGG | + | chr3_1:994428-994447 | None:intergenic | 35.0% | |
| !! | TCATTTTGAGTCATCGCATT+AGG | + | chr3_1:994460-994479 | None:intergenic | 35.0% |
| AGTATGTCAATCTGAGAATC+AGG | - | chr3_1:994510-994529 | Msa0342980:five_prime_UTR | 35.0% | |
| !! | CTTATTGACTTACACACAGA+TGG | - | chr3_1:994618-994637 | Msa0342980:five_prime_UTR | 35.0% |
| GCCAGCATTGTAAAAAGATA+TGG | - | chr3_1:994785-994804 | Msa0342980:five_prime_UTR | 35.0% | |
| TTATACTAACTTCTCACTCC+AGG | - | chr3_1:994809-994828 | Msa0342980:five_prime_UTR | 35.0% | |
| TTTCCAAAACTTCAGCTCTA+TGG | + | chr3_1:995091-995110 | None:intergenic | 35.0% | |
| ATTCAATGGTTGAGAACCTA+AGG | - | chr3_1:995344-995363 | Msa0342980:five_prime_UTR | 35.0% | |
| GAATTGAATAGTTGGACCTT+AGG | + | chr3_1:995363-995382 | None:intergenic | 35.0% | |
| GCTATAACATTGTTGCGTAG+CGG | - | chr3_1:988509-988528 | Msa0342980:three_prime_UTR | 40.0% | |
| AAAATTCGGCCACGATTAAG+TGG | - | chr3_1:988555-988574 | Msa0342980:three_prime_UTR | 40.0% | |
| GGTTAGATACAAGATGGTCA+AGG | + | chr3_1:989920-989939 | None:intergenic | 40.0% | |
| ACTCGTGGTTAGATACAAGA+TGG | + | chr3_1:989914-989933 | None:intergenic | 40.0% | |
| ACTCTTACCTTCTGATGTGA+AGG | - | chr3_1:989410-989429 | Msa0342980:intron | 40.0% | |
| TGTTCAGAAGGAGAAGTTGA+TGG | - | chr3_1:989692-989711 | Msa0342980:intron | 40.0% | |
| ! | TTGATGGCTAATGCACTGAA+TGG | - | chr3_1:989708-989727 | Msa0342980:intron | 40.0% |
| TGATGGCTAATGCACTGAAT+GGG | - | chr3_1:989709-989728 | Msa0342980:intron | 40.0% | |
| ACTTTCTGATTGTGCTTCCT+TGG | - | chr3_1:989751-989770 | Msa0342980:intron | 40.0% | |
| ACACTTCTCAACAAGTACCA+AGG | + | chr3_1:989771-989790 | None:intergenic | 40.0% | |
| ACAAACTCCTTCACATCAGA+AGG | - | chr3_1:989835-989854 | Msa0342980:intron | 40.0% | |
| ACTCATACCTTCTGATGTGA+AGG | + | chr3_1:989845-989864 | None:intergenic | 40.0% | |
| TCAACTTCAATTTGGACTCG+TGG | - | chr3_1:989899-989918 | Msa0342980:intron | 40.0% | |
| ACTCGTGGTTAGATACAAGA+TGG | - | chr3_1:989914-989933 | Msa0342980:intron | 40.0% | |
| GGTTAGATACAAGATGGTCA+AGG | - | chr3_1:989920-989939 | Msa0342980:five_prime_UTR | 40.0% | |
| GAAACTCACCAATAGTTTCC+TGG | - | chr3_1:990385-990404 | Msa0342980:five_prime_UTR | 40.0% | |
| AAGCGAGAAGATGCTTACTA+AGG | - | chr3_1:990746-990765 | Msa0342980:intron | 40.0% | |
| AGCGAGAAGATGCTTACTAA+GGG | - | chr3_1:990747-990766 | Msa0342980:intron | 40.0% | |
| CGAGAAATTTGCACCTATTG+TGG | - | chr3_1:991001-991020 | Msa0342980:five_prime_UTR | 40.0% | |
| ! | ATTTACCGATGCTGCTTCAA+AGG | - | chr3_1:991034-991053 | Msa0342980:intron | 40.0% |
| !! | ACAAACCTTTGAAGCAGCAT+CGG | + | chr3_1:991042-991061 | None:intergenic | 40.0% |
| GATGTTGAACAGGACATACA+AGG | - | chr3_1:991095-991114 | Msa0342980:intron | 40.0% | |
| AGGCAGAGTAGTATTTAGTC+AGG | - | chr3_1:991115-991134 | Msa0342980:intron | 40.0% | |
| CAGAGTAGTATTTAGTCAGG+AGG | - | chr3_1:991118-991137 | Msa0342980:intron | 40.0% | |
| TGCTCAAAAGATATCAGAGG+AGG | - | chr3_1:991148-991167 | Msa0342980:intron | 40.0% | |
| GCTCAAAAGATATCAGAGGA+GGG | - | chr3_1:991149-991168 | Msa0342980:intron | 40.0% | |
| CTCAAAAGATATCAGAGGAG+GGG | - | chr3_1:991150-991169 | Msa0342980:intron | 40.0% | |
| ! | AATTGGAAGCTGGCTTATGA+GGG | + | chr3_1:991252-991271 | None:intergenic | 40.0% |
| CATCAATAGGAATTGGAAGC+TGG | + | chr3_1:991262-991281 | None:intergenic | 40.0% | |
| GATGTAGAGGACAAACAAGA+CGG | - | chr3_1:991278-991297 | Msa0342980:five_prime_UTR | 40.0% | |
| CGGAATTTAATTCAACCAGG+AGG | - | chr3_1:991298-991317 | Msa0342980:intron | 40.0% | |
| TCTGAAAAAGCAATCCGTTC+AGG | - | chr3_1:991455-991474 | Msa0342980:intron | 40.0% | |
| ATGCATGACTCCAAAACTGT+AGG | - | chr3_1:991897-991916 | Msa0342980:intron | 40.0% | |
| ! | GCAACTACAACCTACAGTTT+TGG | + | chr3_1:991910-991929 | None:intergenic | 40.0% |
| GTTATCTGTTGACAACCAAC+TGG | - | chr3_1:991954-991973 | Msa0342980:five_prime_UTR | 40.0% | |
| AGTGGGATGAATGCAATAGA+TGG | - | chr3_1:992182-992201 | Msa0342980:intron | 40.0% | |
| AATGCATGTTCCCTTACCAA+AGG | - | chr3_1:992303-992322 | Msa0342980:intron | 40.0% | |
| TCTCATGCAAGAGAGAAAAC+TGG | - | chr3_1:992399-992418 | Msa0342980:intron | 40.0% | |
| CTCATGCAAGAGAGAAAACT+GGG | - | chr3_1:992400-992419 | Msa0342980:intron | 40.0% | |
| AGGGAATGAGAATCTTGATG+AGG | - | chr3_1:992433-992452 | Msa0342980:intron | 40.0% | |
| ! | GGAGCAGATGTATGCATTTT+TGG | - | chr3_1:992950-992969 | Msa0342980:intron | 40.0% |
| !!! | CATTTTTGGAATGTACGTCC+AGG | - | chr3_1:992964-992983 | Msa0342980:intron | 40.0% |
| TGCATTCAGAGTCAAATTCC+TGG | + | chr3_1:992985-993004 | None:intergenic | 40.0% | |
| ! | ATGGTAAACGAAGGTACGAA+GGG | + | chr3_1:993096-993115 | None:intergenic | 40.0% |
| AGAAACAAAAGACAGACCAG+CGG | + | chr3_1:993374-993393 | None:intergenic | 40.0% | |
| !!! | TTGGAGTTCCCTTTTTCAGT+AGG | + | chr3_1:993546-993565 | None:intergenic | 40.0% |
| TACTGAAAAAGGGAACTCCA+AGG | - | chr3_1:993545-993564 | Msa0342980:five_prime_UTR | 40.0% | |
| !!! | ACTCTCTTTTTCGAAGGTCT+TGG | + | chr3_1:993634-993653 | None:intergenic | 40.0% |
| ! | ACCTTCGAAAAAGAGAGTGT+AGG | - | chr3_1:993636-993655 | Msa0342980:five_prime_UTR | 40.0% |
| !!! | TCCTACACTCTCTTTTTCGA+AGG | + | chr3_1:993640-993659 | None:intergenic | 40.0% |
| CCAACCTAATAGAAGTTAGG+GGG | + | chr3_1:993897-993916 | None:intergenic | 40.0% | |
| GCCAACCTAATAGAAGTTAG+GGG | + | chr3_1:993898-993917 | None:intergenic | 40.0% | |
| GGCCAACCTAATAGAAGTTA+GGG | + | chr3_1:993899-993918 | None:intergenic | 40.0% | |
| TGGCCAACCTAATAGAAGTT+AGG | + | chr3_1:993900-993919 | None:intergenic | 40.0% | |
| GCCAAAATATATTGCCTACC+AGG | - | chr3_1:993916-993935 | Msa0342980:five_prime_UTR | 40.0% | |
| ACACACTTCAAAGAATGGTG+AGG | - | chr3_1:994161-994180 | Msa0342980:five_prime_UTR | 40.0% | |
| GTCCTTGAGAGTAGATTGTT+TGG | - | chr3_1:994328-994347 | Msa0342980:intron | 40.0% | |
| CAAACTGAAACTGAGACTTC+TGG | + | chr3_1:994381-994400 | None:intergenic | 40.0% | |
| TCGCATTAGGATTGTGTAGA+TGG | + | chr3_1:994447-994466 | None:intergenic | 40.0% | |
| !! | GCACTGATTTCTGTTCTACA+TGG | + | chr3_1:995055-995074 | None:intergenic | 40.0% |
| ! | TTGCCATAGAGCTGAAGTTT+TGG | - | chr3_1:995085-995104 | Msa0342980:intron | 40.0% |
| ! | CATTGTTGCGTAGCGGAATT+CGG | - | chr3_1:988516-988535 | Msa0342980:three_prime_UTR | 45.0% |
| AGCGCTATACCACTTAATCG+TGG | + | chr3_1:988567-988586 | None:intergenic | 45.0% | |
| TGTTGAAATTGGAGACTCCC+AGG | - | chr3_1:988847-988866 | Msa0342980:CDS | 45.0% | |
| AGCGTCTCAAATGCAAGAAG+CGG | + | chr3_1:990018-990037 | None:intergenic | 45.0% | |
| ! | GCATTTGAGACGCTTCTTAC+TGG | - | chr3_1:989045-989064 | Msa0342980:intron | 45.0% |
| AGCGTCTCAAATGCAAGAAG+CGG | + | chr3_1:990018-990037 | None:intergenic | 45.0% | |
| ! | GCATTTGAGACGCTTCTTAC+TGG | - | chr3_1:989045-989064 | Msa0342980:intron | 45.0% |
| TCAACTTCAGTTTGGACTCG+TGG | + | chr3_1:989356-989375 | None:intergenic | 45.0% | |
| ! | CATGGACTGAATCAACATCG+AGG | - | chr3_1:989387-989406 | Msa0342980:intron | 45.0% |
| ! | CATGGACTGAATCAGCATCA+AGG | + | chr3_1:989868-989887 | None:intergenic | 45.0% |
| ! | GCATTTGAGACGCTTCTTAC+TGG | + | chr3_1:989045-989064 | None:intergenic | 45.0% |
| ! | GCATTTGAGACGCTTCTTAC+TGG | + | chr3_1:989045-989064 | None:intergenic | 45.0% |
| AGCGTCTCAAATGCAAGAAG+CGG | - | chr3_1:990018-990037 | Msa0342980:five_prime_UTR | 45.0% | |
| GAAACTAAACGCAAAGTGGG+AGG | - | chr3_1:990333-990352 | Msa0342980:five_prime_UTR | 45.0% | |
| TGTTGAAATTGGAGACTCCC+AGG | + | chr3_1:988847-988866 | None:intergenic | 45.0% | |
| AAGTAGGATTCTCCACAGAC+TGG | - | chr3_1:990871-990890 | Msa0342980:five_prime_UTR | 45.0% | |
| ! | GAATTGGAAGCTGGCTTATG+AGG | + | chr3_1:991253-991272 | None:intergenic | 45.0% |
| ATGGGTGGACAGATCAATCA+AGG | + | chr3_1:991409-991428 | None:intergenic | 45.0% | |
| AGGTGGTGTACTAACCTGAA+CGG | + | chr3_1:991472-991491 | None:intergenic | 45.0% | |
| TCAGCAGGGTAATTCTCATC+TGG | + | chr3_1:992009-992028 | None:intergenic | 45.0% | |
| GAATTAGCCGCCTTTGGTAA+GGG | + | chr3_1:992316-992335 | None:intergenic | 45.0% | |
| AGAATTAGCCGCCTTTGGTA+AGG | + | chr3_1:992317-992336 | None:intergenic | 45.0% | |
| TTACCAAAGGCGGCTAATTC+TGG | - | chr3_1:992316-992335 | Msa0342980:intron | 45.0% | |
| TGGTCACTTAGCACTGTTCT+TGG | + | chr3_1:992355-992374 | None:intergenic | 45.0% | |
| AGTTCAGAAGAAGCAACTGG+TGG | + | chr3_1:992830-992849 | None:intergenic | 45.0% | |
| !! | TGCATACACAAGCGCTGATT+GGG | + | chr3_1:993013-993032 | None:intergenic | 45.0% |
| !! | ATGCATACACAAGCGCTGAT+TGG | + | chr3_1:993014-993033 | None:intergenic | 45.0% |
| CCACACTTTGTCCTTCTTTC+AGG | + | chr3_1:993068-993087 | None:intergenic | 45.0% | |
| CCTGAAAGAAGGACAAAGTG+TGG | - | chr3_1:993065-993084 | Msa0342980:five_prime_UTR | 45.0% | |
| ! | CATGGTAAACGAAGGTACGA+AGG | + | chr3_1:993097-993116 | None:intergenic | 45.0% |
| ACCTGTGCTCCTTCAAAGAA+AGG | - | chr3_1:993285-993304 | Msa0342980:intron | 45.0% | |
| CCTGTGCTCCTTCAAAGAAA+GGG | - | chr3_1:993286-993305 | Msa0342980:intron | 45.0% | |
| CTGTGCTCCTTCAAAGAAAG+GGG | - | chr3_1:993287-993306 | Msa0342980:intron | 45.0% | |
| ! | TTCGGAGTCTTTTGCTCTTC+GGG | + | chr3_1:993336-993355 | None:intergenic | 45.0% |
| ! | CTTCGGAGTCTTTTGCTCTT+CGG | + | chr3_1:993337-993356 | None:intergenic | 45.0% |
| CGGCGTAGCTTATCATTCTT+CGG | + | chr3_1:993354-993373 | None:intergenic | 45.0% | |
| CAAACGAAAAGCTGTCACCT+TGG | + | chr3_1:993565-993584 | None:intergenic | 45.0% | |
| CAGCAGTCTCCTTCAAAGTA+TGG | + | chr3_1:993588-993607 | None:intergenic | 45.0% | |
| ! | CATACTTTGAAGGAGACTGC+TGG | - | chr3_1:993586-993605 | Msa0342980:five_prime_UTR | 45.0% |
| ATCACCAGAGTCTCTTTGGA+AGG | + | chr3_1:993726-993745 | None:intergenic | 45.0% | |
| TTGCATCACCAGAGTCTCTT+TGG | + | chr3_1:993730-993749 | None:intergenic | 45.0% | |
| CCCCCTAACTTCTATTAGGT+TGG | - | chr3_1:993894-993913 | Msa0342980:five_prime_UTR | 45.0% | |
| TCCCAGACACTATCACTTCA+CGG | + | chr3_1:993986-994005 | None:intergenic | 45.0% | |
| TGAGGTGCATACACTTTGTC+AGG | - | chr3_1:994179-994198 | Msa0342980:five_prime_UTR | 45.0% | |
| GGAGGGGATATCATCAACAA+CGG | + | chr3_1:994287-994306 | None:intergenic | 45.0% | |
| TAGAGGAATACTTGGCACGA+CGG | + | chr3_1:994411-994430 | None:intergenic | 45.0% | |
| GAACAGTTTGGATGAGAGCA+TGG | + | chr3_1:994706-994725 | None:intergenic | 45.0% | |
| CTCCAGGAATTGCAAAGACT+CGG | - | chr3_1:994825-994844 | Msa0342980:five_prime_UTR | 45.0% | |
| TTCCGAGTCTTTGCAATTCC+TGG | + | chr3_1:994830-994849 | None:intergenic | 45.0% | |
| AATGTAGAATACCACGCTGC+AGG | - | chr3_1:994848-994867 | Msa0342980:five_prime_UTR | 45.0% | |
| !!! | GCTGAAGTTTTGGAAAGCGA+TGG | - | chr3_1:995095-995114 | Msa0342980:five_prime_UTR | 45.0% |
| !!! | TAATATAAGAATTATAATTT+TGG | + | chr3_1:989137-989156 | None:intergenic | 5.0% |
| GGAGACTCCCAGGAAACTAT+TGG | - | chr3_1:988857-988876 | Msa0342980:CDS | 50.0% | |
| GCGTCTCAAATGCAAGAAGC+GGG | + | chr3_1:990019-990038 | None:intergenic | 50.0% | |
| GCGTCTCAAATGCAAGAAGC+GGG | - | chr3_1:990019-990038 | Msa0342980:five_prime_UTR | 50.0% | |
| GGAGACTCCCAGGAAACTAT+TGG | + | chr3_1:988857-988876 | None:intergenic | 50.0% | |
| TAGGATTCTCCACAGACTGG+CGG | - | chr3_1:990874-990893 | Msa0342980:five_prime_UTR | 50.0% | |
| AGAATGATACCGCCAGTCTG+TGG | + | chr3_1:990886-990905 | None:intergenic | 50.0% | |
| ACTGCTTCTTCACTGCCAGT+TGG | + | chr3_1:991972-991991 | None:intergenic | 50.0% | |
| GGCAGTGAAGAAGCAGTTTC+TGG | - | chr3_1:991975-991994 | Msa0342980:five_prime_UTR | 50.0% | |
| GCATGTTCCCTTACCAAAGG+CGG | - | chr3_1:992306-992325 | Msa0342980:intron | 50.0% | |
| ! | GTTTCTGGACATCATCCCAG+AGG | - | chr3_1:992732-992751 | Msa0342980:five_prime_UTR | 50.0% |
| CAGCAGGGTAATTCTCCTCT+GGG | + | chr3_1:992750-992769 | None:intergenic | 50.0% | |
| TCAGCAGGGTAATTCTCCTC+TGG | + | chr3_1:992751-992770 | None:intergenic | 50.0% | |
| ! | CCCTTTCTTTGAAGGAGCAC+AGG | + | chr3_1:993289-993308 | None:intergenic | 50.0% |
| ! | GAGTCTTTTGCTCTTCGGGA+TGG | + | chr3_1:993332-993351 | None:intergenic | 50.0% |
| AGAATGATAAGCTACGCCGC+TGG | - | chr3_1:993355-993374 | Msa0342980:intron | 50.0% | |
| TTTGAAGGAGACTGCTGGTG+TGG | - | chr3_1:993591-993610 | Msa0342980:five_prime_UTR | 50.0% | |
| ! | CTGCTGGTGTGGTAATGCTA+TGG | - | chr3_1:993602-993621 | Msa0342980:five_prime_UTR | 50.0% |
| ! | CAGAGTCTCTTTGGAAGGCT+TGG | + | chr3_1:993721-993740 | None:intergenic | 50.0% |
| CAAGCCTTCCAAAGAGACTC+TGG | - | chr3_1:993719-993738 | Msa0342980:five_prime_UTR | 50.0% | |
| ! | TGCCGTGAAGTGATAGTGTC+TGG | - | chr3_1:993981-994000 | Msa0342980:five_prime_UTR | 50.0% |
| ! | GCCGTGAAGTGATAGTGTCT+GGG | - | chr3_1:993982-994001 | Msa0342980:five_prime_UTR | 50.0% |
| ! | TGATAGTGTCTGGGAAGCGA+TGG | - | chr3_1:993991-994010 | Msa0342980:five_prime_UTR | 50.0% |
| ATGGCTCAGCATTACTTGCC+CGG | + | chr3_1:994687-994706 | None:intergenic | 50.0% | |
| ATTGTAACACACCTGCAGCG+TGG | + | chr3_1:994862-994881 | None:intergenic | 50.0% | |
| GAAAGCGATGGAGCAATCGT+TGG | - | chr3_1:995107-995126 | Msa0342980:five_prime_UTR | 50.0% | |
| CTTGAGAATCTGTCCCCTCC+TGG | + | chr3_1:991316-991335 | None:intergenic | 55.0% | |
| GCACCAGAATTAGCCGCCTT+TGG | + | chr3_1:992322-992341 | None:intergenic | 55.0% | |
| ! | GGCGGCTAATTCTGGTGCTA+AGG | - | chr3_1:992324-992343 | Msa0342980:intron | 55.0% |
| ATGCATCTCAATGCCGCCGC+CGG | - | chr3_1:994665-994684 | Msa0342980:five_prime_UTR | 60.0% | |
| GCTCAGCATTACTTGCCCGG+CGG | + | chr3_1:994684-994703 | None:intergenic | 60.0% | |
| TGCATCTCAATGCCGCCGCC+GGG | - | chr3_1:994666-994685 | Msa0342980:five_prime_UTR | 65.0% | |
| CAGCATTACTTGCCCGGCGG+CGG | + | chr3_1:994681-994700 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_1 | gene | 988496 | 995470 | 988496 | ID=Msa0342980;Name=Msa0342980 |
| chr3_1 | mRNA | 988496 | 995470 | 988496 | ID=Msa0342980-mRNA-1;Parent=Msa0342980;Name=Msa0342980-mRNA-1;_AED=0.12;_eAED=0.12;_QI=3847|1|1|1|0.6|0.56|16|334|109 |
| chr3_1 | exon | 988496 | 988926 | 988496 | ID=Msa0342980-mRNA-1:exon:350;Parent=Msa0342980-mRNA-1 |
| chr3_1 | exon | 989097 | 989329 | 989097 | ID=Msa0342980-mRNA-1:exon:349;Parent=Msa0342980-mRNA-1 |
| chr3_1 | exon | 989418 | 989683 | 989418 | ID=Msa0342980-mRNA-1:exon:348;Parent=Msa0342980-mRNA-1 |
| chr3_1 | exon | 989766 | 989823 | 989766 | ID=Msa0342980-mRNA-1:exon:347;Parent=Msa0342980-mRNA-1 |
| chr3_1 | exon | 989915 | 990054 | 989915 | ID=Msa0342980-mRNA-1:exon:346;Parent=Msa0342980-mRNA-1 |
| chr3_1 | exon | 990214 | 990502 | 990214 | ID=Msa0342980-mRNA-1:exon:345;Parent=Msa0342980-mRNA-1 |
| chr3_1 | exon | 990590 | 990735 | 990590 | ID=Msa0342980-mRNA-1:exon:344;Parent=Msa0342980-mRNA-1 |
| chr3_1 | exon | 990842 | 991043 | 990842 | ID=Msa0342980-mRNA-1:exon:343;Parent=Msa0342980-mRNA-1 |
| chr3_1 | exon | 991177 | 991305 | 991177 | ID=Msa0342980-mRNA-1:exon:342;Parent=Msa0342980-mRNA-1 |
| chr3_1 | exon | 991512 | 991782 | 991512 | ID=Msa0342980-mRNA-1:exon:341;Parent=Msa0342980-mRNA-1 |
| chr3_1 | exon | 991919 | 992047 | 991919 | ID=Msa0342980-mRNA-1:exon:340;Parent=Msa0342980-mRNA-1 |
| chr3_1 | exon | 992490 | 992859 | 992490 | ID=Msa0342980-mRNA-1:exon:339;Parent=Msa0342980-mRNA-1 |
| chr3_1 | exon | 993023 | 993240 | 993023 | ID=Msa0342980-mRNA-1:exon:338;Parent=Msa0342980-mRNA-1 |
| chr3_1 | exon | 993498 | 994235 | 993498 | ID=Msa0342980-mRNA-1:exon:337;Parent=Msa0342980-mRNA-1 |
| chr3_1 | exon | 994458 | 994965 | 994458 | ID=Msa0342980-mRNA-1:exon:336;Parent=Msa0342980-mRNA-1 |
| chr3_1 | exon | 995088 | 995470 | 995088 | ID=Msa0342980-mRNA-1:exon:335;Parent=Msa0342980-mRNA-1 |
| chr3_1 | five_prime_UTR | 995088 | 995470 | 995088 | ID=Msa0342980-mRNA-1:five_prime_utr;Parent=Msa0342980-mRNA-1 |
| chr3_1 | five_prime_UTR | 994458 | 994965 | 994458 | ID=Msa0342980-mRNA-1:five_prime_utr;Parent=Msa0342980-mRNA-1 |
| chr3_1 | five_prime_UTR | 993498 | 994235 | 993498 | ID=Msa0342980-mRNA-1:five_prime_utr;Parent=Msa0342980-mRNA-1 |
| chr3_1 | five_prime_UTR | 993023 | 993240 | 993023 | ID=Msa0342980-mRNA-1:five_prime_utr;Parent=Msa0342980-mRNA-1 |
| chr3_1 | five_prime_UTR | 992490 | 992859 | 992490 | ID=Msa0342980-mRNA-1:five_prime_utr;Parent=Msa0342980-mRNA-1 |
| chr3_1 | five_prime_UTR | 991919 | 992047 | 991919 | ID=Msa0342980-mRNA-1:five_prime_utr;Parent=Msa0342980-mRNA-1 |
| chr3_1 | five_prime_UTR | 991512 | 991782 | 991512 | ID=Msa0342980-mRNA-1:five_prime_utr;Parent=Msa0342980-mRNA-1 |
| chr3_1 | five_prime_UTR | 991177 | 991305 | 991177 | ID=Msa0342980-mRNA-1:five_prime_utr;Parent=Msa0342980-mRNA-1 |
| chr3_1 | five_prime_UTR | 990842 | 991043 | 990842 | ID=Msa0342980-mRNA-1:five_prime_utr;Parent=Msa0342980-mRNA-1 |
| chr3_1 | five_prime_UTR | 990590 | 990735 | 990590 | ID=Msa0342980-mRNA-1:five_prime_utr;Parent=Msa0342980-mRNA-1 |
| chr3_1 | five_prime_UTR | 990214 | 990502 | 990214 | ID=Msa0342980-mRNA-1:five_prime_utr;Parent=Msa0342980-mRNA-1 |
| chr3_1 | five_prime_UTR | 989915 | 990054 | 989915 | ID=Msa0342980-mRNA-1:five_prime_utr;Parent=Msa0342980-mRNA-1 |
| chr3_1 | five_prime_UTR | 989766 | 989823 | 989766 | ID=Msa0342980-mRNA-1:five_prime_utr;Parent=Msa0342980-mRNA-1 |
| chr3_1 | five_prime_UTR | 989418 | 989683 | 989418 | ID=Msa0342980-mRNA-1:five_prime_utr;Parent=Msa0342980-mRNA-1 |
| chr3_1 | CDS | 989097 | 989329 | 989097 | ID=Msa0342980-mRNA-1:cds;Parent=Msa0342980-mRNA-1 |
| chr3_1 | CDS | 988830 | 988926 | 988830 | ID=Msa0342980-mRNA-1:cds;Parent=Msa0342980-mRNA-1 |
| chr3_1 | three_prime_UTR | 988496 | 988829 | 988496 | ID=Msa0342980-mRNA-1:three_prime_utr;Parent=Msa0342980-mRNA-1 |
| Gene Sequence |
| Protein sequence |
