Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1175100 | XP_003627446.1 | 96.269 | 134 | 4 | 1 | 1 | 134 | 1 | 133 | 6.88e-90 | 266 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0026750 | Msa1175100 | 0.821659 | 3.589972e-53 | -8.615850e-47 |
| Msa0042490 | Msa1175100 | -0.830001 | 3.754405e-55 | -8.615850e-47 |
| Msa0051960 | Msa1175100 | 0.806733 | 7.128175e-50 | -8.615850e-47 |
| Msa0075160 | Msa1175100 | -0.800640 | 1.311135e-48 | -8.615850e-47 |
| Msa0079580 | Msa1175100 | -0.820886 | 5.410593e-53 | -8.615850e-47 |
| Msa0081020 | Msa1175100 | 0.807635 | 4.591685e-50 | -8.615850e-47 |
| Msa0095940 | Msa1175100 | 0.822530 | 2.254849e-53 | -8.615850e-47 |
| Msa0101960 | Msa1175100 | 0.819997 | 8.656545e-53 | -8.615850e-47 |
| Msa0108760 | Msa1175100 | 0.806059 | 9.887170e-50 | -8.615850e-47 |
| Msa0613420 | Msa1175100 | 0.816974 | 4.192381e-52 | -8.615850e-47 |
| Msa0641130 | Msa1175100 | 0.821927 | 3.111856e-53 | -8.615850e-47 |
| Msa0687210 | Msa1175100 | 0.804975 | 1.668575e-49 | -8.615850e-47 |
| Msa0833270 | Msa1175100 | 0.834727 | 2.535405e-56 | -8.615850e-47 |
| Msa0836180 | Msa1175100 | 0.818282 | 2.125977e-52 | -8.615850e-47 |
| Msa0123000 | Msa1175100 | -0.801503 | 8.729975e-49 | -8.615850e-47 |
| Msa0168310 | Msa1175100 | 0.832919 | 7.181077e-56 | -8.615850e-47 |
| Msa0215820 | Msa1175100 | 0.813658 | 2.289181e-51 | -8.615850e-47 |
| Msa0396240 | Msa1175100 | 0.809342 | 1.983909e-50 | -8.615850e-47 |
| Msa1030810 | Msa1175100 | 0.800155 | 1.645699e-48 | -8.615850e-47 |
| Msa1042580 | Msa1175100 | 0.820738 | 5.853832e-53 | -8.615850e-47 |
| Msa1069890 | Msa1175100 | 0.810934 | 9.003477e-51 | -8.615850e-47 |
| Msa0277960 | Msa1175100 | 0.815831 | 7.558362e-52 | -8.615850e-47 |
| Msa0282780 | Msa1175100 | 0.840448 | 8.640484e-58 | -8.615850e-47 |
| Msa0295420 | Msa1175100 | 0.804959 | 1.681355e-49 | -8.615850e-47 |
| Msa0342980 | Msa1175100 | 0.843027 | 1.803649e-58 | -8.615850e-47 |
| Msa0349340 | Msa1175100 | 0.828714 | 7.709165e-55 | -8.615850e-47 |
| Msa0351430 | Msa1175100 | 0.805884 | 1.075912e-49 | -8.615850e-47 |
| Msa0351470 | Msa1175100 | 0.801727 | 7.854874e-49 | -8.615850e-47 |
| Msa0355550 | Msa1175100 | 0.810714 | 1.004761e-50 | -8.615850e-47 |
| Msa1122150 | Msa1175100 | 0.809875 | 1.524131e-50 | -8.615850e-47 |
| Msa1140630 | Msa1175100 | 0.851099 | 1.106165e-60 | -8.615850e-47 |
| Msa1159470 | Msa1175100 | 0.824853 | 6.445428e-54 | -8.615850e-47 |
| Msa1160560 | Msa1175100 | 0.801648 | 8.156040e-49 | -8.615850e-47 |
| Msa1175100 | Msa1213890 | 0.820425 | 6.904721e-53 | -8.615850e-47 |
| Msa1175100 | Msa1218570 | 0.809478 | 1.854974e-50 | -8.615850e-47 |
| Msa1175100 | Msa1234470 | 0.988891 | 7.884699e-176 | -8.615850e-47 |
| Msa1175100 | Msa1238600 | 0.828345 | 9.468665e-55 | -8.615850e-47 |
| Msa1175100 | Msa1238660 | 0.809314 | 2.011370e-50 | -8.615850e-47 |
| Msa1175100 | Msa1256060 | 0.851735 | 7.313927e-61 | -8.615850e-47 |
| Msa1175100 | Msa1257750 | 0.805481 | 1.307674e-49 | -8.615850e-47 |
| Msa1175100 | Msa1289050 | 0.824246 | 8.954500e-54 | -8.615850e-47 |
| Msa1175100 | Msa1289090 | 0.833697 | 4.594790e-56 | -8.615850e-47 |
| Msa1175100 | Msa1300700 | 0.806563 | 7.742817e-50 | -8.615850e-47 |
| Msa1175100 | Msa1306830 | 0.811689 | 6.174114e-51 | -8.615850e-47 |
| Msa1175100 | Msa1306960 | 0.991538 | 3.501685e-188 | -8.615850e-47 |
| Msa1175100 | Msa1315480 | 0.940225 | 3.357260e-100 | -8.615850e-47 |
| Msa1175100 | Msa1319560 | 0.811844 | 5.712843e-51 | -8.615850e-47 |
| Msa1175100 | Msa1362290 | 0.812108 | 5.005074e-51 | -8.615850e-47 |
| Msa1175100 | Msa1363390 | 0.803314 | 3.698032e-49 | -8.615850e-47 |
| Msa1175100 | Msa1419840 | 0.805075 | 1.590122e-49 | -8.615850e-47 |
| Msa1175100 | Msa1436590 | 0.805024 | 1.629695e-49 | -8.615850e-47 |
| Msa1175100 | Msa1450440 | 0.815203 | 1.042761e-51 | -8.615850e-47 |
| Msa0545050 | Msa1175100 | 0.822716 | 2.040703e-53 | -8.615850e-47 |
| Msa0576900 | Msa1175100 | 0.832428 | 9.504346e-56 | -8.615850e-47 |
| Msa0600590 | Msa1175100 | 0.814644 | 1.387115e-51 | -8.615850e-47 |
| Msa0870510 | Msa1175100 | 0.802373 | 5.785883e-49 | -8.615850e-47 |
| Msa0880800 | Msa1175100 | 0.810129 | 1.343823e-50 | -8.615850e-47 |
| Msa0930270 | Msa1175100 | 0.807400 | 5.149026e-50 | -8.615850e-47 |
| Msa0943970 | Msa1175100 | 0.827313 | 1.675853e-54 | -8.615850e-47 |
| Msa0944020 | Msa1175100 | 0.831330 | 1.774619e-55 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1175100 | MtrunA17_Chr8g0345171 | 96.269 | 134 | 4 | 1 | 1 | 134 | 1 | 133 | 6.33e-94 | 266 |
| Msa1175100 | MtrunA17_Chr7g0276621 | 55.469 | 128 | 43 | 6 | 1 | 123 | 23 | 141 | 1.01e-37 | 125 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1175100 | AT3G14280.1 | 39.815 | 108 | 57 | 3 | 21 | 128 | 21 | 120 | 2.84e-15 | 68.2 |
Find 29 sgRNAs with CRISPR-Local
Find 138 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TAATTTGAATTGCAATAAAA+TGG | 0.221285 | 8_1:-6376465 | Msa1175100:exon |
| TTCTTGAAGAATTAGCTTAA+TGG | 0.238281 | 8_1:-6377500 | Msa1175100:exon |
| GAATTATCATATTTCTGAAT+TGG | 0.275390 | 8_1:+6377448 | None:intergenic |
| AAGAAGAAGATGAGATAATA+AGG | 0.331139 | 8_1:+6377537 | None:intergenic |
| AATTATCATATTTCTGAATT+GGG | 0.345181 | 8_1:+6377449 | None:intergenic |
| TTGTCTCACTCATAGCTTTG+AGG | 0.351441 | 8_1:-6376412 | Msa1175100:three_prime_UTR |
| AGTTGGTTTCAAATTGCAAA+AGG | 0.405294 | 8_1:-6376535 | Msa1175100:CDS |
| CTTTGGAGCATAGCATCGTT+TGG | 0.411384 | 8_1:+6377393 | None:intergenic |
| TGAATCTTCTAAAACAAAGT+TGG | 0.441522 | 8_1:-6376552 | Msa1175100:CDS |
| CTTGAAATTTGTCTATAAGA+TGG | 0.456782 | 8_1:+6376873 | None:intergenic |
| TCAAATAGCACATGTGTAGT+AGG | 0.464126 | 8_1:-6376343 | Msa1175100:three_prime_UTR |
| TTATTTCTCCACTCTCATCT+TGG | 0.480024 | 8_1:+6376919 | None:intergenic |
| GTTGGTTTCAAATTGCAAAA+GGG | 0.500062 | 8_1:-6376534 | Msa1175100:CDS |
| ATTTGTGAAGGGTATGATGA+AGG | 0.501766 | 8_1:-6376897 | Msa1175100:CDS |
| GACCAACGGTTCATCACAAA+AGG | 0.504204 | 8_1:-6376851 | Msa1175100:intron |
| GAAATTGATGATGCAATTGA+AGG | 0.528412 | 8_1:-6376508 | Msa1175100:CDS |
| GTGGAGAAATAATTTGTGAA+GGG | 0.550320 | 8_1:-6376908 | Msa1175100:CDS |
| AGTGGAGAAATAATTTGTGA+AGG | 0.561503 | 8_1:-6376909 | Msa1175100:CDS |
| TTTGTGAAGGGTATGATGAA+GGG | 0.566441 | 8_1:-6376896 | Msa1175100:CDS |
| CACAGCATCCATCAAGAACA+AGG | 0.570428 | 8_1:-6377335 | Msa1175100:intron |
| ATTCTTCAAGAACAAGAAAG+AGG | 0.573168 | 8_1:+6377511 | None:intergenic |
| AAGAAGATGAGATAATAAGG+AGG | 0.575986 | 8_1:+6377540 | None:intergenic |
| TAGACAAATTTCAAGACCAA+CGG | 0.578411 | 8_1:-6376865 | Msa1175100:CDS |
| TGAAGGTGGTCGTTTGCAAG+AGG | 0.580771 | 8_1:-6376491 | Msa1175100:CDS |
| AAAGTCAACAGTTGGTCCAG+TGG | 0.602548 | 8_1:-6377368 | Msa1175100:CDS |
| CAAAGCTATGAGTGAGACAA+AGG | 0.622287 | 8_1:+6376415 | None:intergenic |
| ATTTGCTACCAAGATGAGAG+TGG | 0.633835 | 8_1:-6376927 | Msa1175100:CDS |
| CTTCAAGAACAAGAAAGAGG+TGG | 0.639571 | 8_1:+6377514 | None:intergenic |
| ATTGATGATGCAATTGAAGG+TGG | 0.706142 | 8_1:-6376505 | Msa1175100:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATTATCATATTTCTGAATT+GGG | + | chr8_1:6376414-6376433 | None:intergenic | 15.0% |
| !! | AAGAATAGATAAAAGATAAT+AGG | + | chr8_1:6376558-6376577 | None:intergenic | 15.0% |
| !! | ATAGATATATGTATATCAAT+TGG | + | chr8_1:6376601-6376620 | None:intergenic | 15.0% |
| !! | AAAAAAGATGAAAAAAACTT+TGG | - | chr8_1:6376647-6376666 | Msa1175100:intron | 15.0% |
| !!! | AGATAAGTTTTTTCTTTTTT+TGG | - | chr8_1:6376767-6376786 | Msa1175100:intron | 15.0% |
| !!! | AGAATAAAATTGTCATTTTA+TGG | + | chr8_1:6377093-6377112 | None:intergenic | 15.0% |
| !!! | AAAATGACAATTTTATTCTT+CGG | - | chr8_1:6377094-6377113 | Msa1175100:intron | 15.0% |
| !! | TAATTTGAATTGCAATAAAA+TGG | - | chr8_1:6377395-6377414 | Msa1175100:CDS | 15.0% |
| !!! | AATTATCATATTTCTGAATT+GGG | + | chr8_1:6376414-6376433 | None:intergenic | 15.0% |
| !! | AAGAATAGATAAAAGATAAT+AGG | + | chr8_1:6376558-6376577 | None:intergenic | 15.0% |
| !! | ATAGATATATGTATATCAAT+TGG | + | chr8_1:6376601-6376620 | None:intergenic | 15.0% |
| !! | AAAAAAGATGAAAAAAACTT+TGG | - | chr8_1:6376647-6376666 | Msa1175100:intron | 15.0% |
| !!! | AGATAAGTTTTTTCTTTTTT+TGG | - | chr8_1:6376767-6376786 | Msa1175100:intron | 15.0% |
| !!! | AGAATAAAATTGTCATTTTA+TGG | + | chr8_1:6377093-6377112 | None:intergenic | 15.0% |
| !!! | AAAATGACAATTTTATTCTT+CGG | - | chr8_1:6377094-6377113 | Msa1175100:intron | 15.0% |
| !! | TAATTTGAATTGCAATAAAA+TGG | - | chr8_1:6377395-6377414 | Msa1175100:CDS | 15.0% |
| !!! | GAATTATCATATTTCTGAAT+TGG | + | chr8_1:6376415-6376434 | None:intergenic | 20.0% |
| !!! | AAAAAAACTTTGGTTAGTTA+TGG | - | chr8_1:6376657-6376676 | Msa1175100:intron | 20.0% |
| !!! | TACCTTATAGTTTTTTCTAA+GGG | + | chr8_1:6376735-6376754 | None:intergenic | 20.0% |
| !!! | TGGATATATCTACTTTTTAT+TGG | - | chr8_1:6376787-6376806 | Msa1175100:intron | 20.0% |
| !! | AATTGATGTTTATATTCTGA+AGG | - | chr8_1:6377057-6377076 | Msa1175100:intron | 20.0% |
| !! | ATATAAATATGTCTTACCAA+TGG | - | chr8_1:6377252-6377271 | Msa1175100:intron | 20.0% |
| !!! | GAATTATCATATTTCTGAAT+TGG | + | chr8_1:6376415-6376434 | None:intergenic | 20.0% |
| !!! | AAAAAAACTTTGGTTAGTTA+TGG | - | chr8_1:6376657-6376676 | Msa1175100:intron | 20.0% |
| !!! | TACCTTATAGTTTTTTCTAA+GGG | + | chr8_1:6376735-6376754 | None:intergenic | 20.0% |
| !!! | TGGATATATCTACTTTTTAT+TGG | - | chr8_1:6376787-6376806 | Msa1175100:intron | 20.0% |
| !! | AATTGATGTTTATATTCTGA+AGG | - | chr8_1:6377057-6377076 | Msa1175100:intron | 20.0% |
| !! | ATATAAATATGTCTTACCAA+TGG | - | chr8_1:6377252-6377271 | Msa1175100:intron | 20.0% |
| ! | AATAAGGAGGAAAAATGAAA+TGG | + | chr8_1:6376310-6376329 | None:intergenic | 25.0% |
| ! | AAGAAGAAGATGAGATAATA+AGG | + | chr8_1:6376326-6376345 | None:intergenic | 25.0% |
| !! | TTCTTGAAGAATTAGCTTAA+TGG | - | chr8_1:6376360-6376379 | Msa1175100:three_prime_UTR | 25.0% |
| !! | TTTGGTTAGTTATGGAAATT+TGG | - | chr8_1:6376665-6376684 | Msa1175100:intron | 25.0% |
| ! | TTTGTCTCTAGTTATATCTT+TGG | - | chr8_1:6376704-6376723 | Msa1175100:intron | 25.0% |
| !!! | GTACCTTATAGTTTTTTCTA+AGG | + | chr8_1:6376736-6376755 | None:intergenic | 25.0% |
| ! | TTTCTCCTAGTAGTAAAAAT+AGG | - | chr8_1:6376823-6376842 | Msa1175100:intron | 25.0% |
| ! | TGTCTAATTTGATACTAAAC+AGG | - | chr8_1:6376881-6376900 | Msa1175100:CDS | 25.0% |
| !!! | TACTAAACAGGTTTTTTATG+AGG | - | chr8_1:6376893-6376912 | Msa1175100:CDS | 25.0% |
| ! | CTTGAAATTTGTCTATAAGA+TGG | + | chr8_1:6376990-6377009 | None:intergenic | 25.0% |
| !!! | TGAATCTTCTAAAACAAAGT+TGG | - | chr8_1:6377308-6377327 | Msa1175100:intron | 25.0% |
| ! | AATAAGGAGGAAAAATGAAA+TGG | + | chr8_1:6376310-6376329 | None:intergenic | 25.0% |
| ! | AAGAAGAAGATGAGATAATA+AGG | + | chr8_1:6376326-6376345 | None:intergenic | 25.0% |
| !! | TTCTTGAAGAATTAGCTTAA+TGG | - | chr8_1:6376360-6376379 | Msa1175100:three_prime_UTR | 25.0% |
| !! | TTTGGTTAGTTATGGAAATT+TGG | - | chr8_1:6376665-6376684 | Msa1175100:intron | 25.0% |
| ! | TTTGTCTCTAGTTATATCTT+TGG | - | chr8_1:6376704-6376723 | Msa1175100:intron | 25.0% |
| !!! | GTACCTTATAGTTTTTTCTA+AGG | + | chr8_1:6376736-6376755 | None:intergenic | 25.0% |
| ! | TTTCTCCTAGTAGTAAAAAT+AGG | - | chr8_1:6376823-6376842 | Msa1175100:intron | 25.0% |
| ! | TGTCTAATTTGATACTAAAC+AGG | - | chr8_1:6376881-6376900 | Msa1175100:CDS | 25.0% |
| !!! | TACTAAACAGGTTTTTTATG+AGG | - | chr8_1:6376893-6376912 | Msa1175100:CDS | 25.0% |
| ! | CTTGAAATTTGTCTATAAGA+TGG | + | chr8_1:6376990-6377009 | None:intergenic | 25.0% |
| !!! | TGAATCTTCTAAAACAAAGT+TGG | - | chr8_1:6377308-6377327 | Msa1175100:intron | 25.0% |
| AAGAAGATGAGATAATAAGG+AGG | + | chr8_1:6376323-6376342 | None:intergenic | 30.0% | |
| ATTCTTCAAGAACAAGAAAG+AGG | + | chr8_1:6376352-6376371 | None:intergenic | 30.0% | |
| !! | GATTTTAACCTTGTTCTTGA+TGG | + | chr8_1:6376536-6376555 | None:intergenic | 30.0% |
| GTCCCTTAGAAAAAACTATA+AGG | - | chr8_1:6376730-6376749 | Msa1175100:intron | 30.0% | |
| ACTATAAGGTACGTCAAAAT+TGG | - | chr8_1:6376744-6376763 | Msa1175100:intron | 30.0% | |
| ! | AGTGGAGAAATAATTTGTGA+AGG | - | chr8_1:6376951-6376970 | Msa1175100:CDS | 30.0% |
| ! | GTGGAGAAATAATTTGTGAA+GGG | - | chr8_1:6376952-6376971 | Msa1175100:CDS | 30.0% |
| TAGACAAATTTCAAGACCAA+CGG | - | chr8_1:6376995-6377014 | Msa1175100:intron | 30.0% | |
| ! | ATGACAATTTTATTCTTCGG+CGG | - | chr8_1:6377097-6377116 | Msa1175100:intron | 30.0% |
| TGCTACCAGTTAAAATCTTT+CGG | - | chr8_1:6377125-6377144 | Msa1175100:intron | 30.0% | |
| AAATGTCGATGAGGTTAATT+TGG | - | chr8_1:6377153-6377172 | Msa1175100:intron | 30.0% | |
| !! | AGGTTAATTTGGTATTTTCG+TGG | - | chr8_1:6377164-6377183 | Msa1175100:intron | 30.0% |
| ! | TTTCTAGCATTCTTTGATGT+CGG | - | chr8_1:6377190-6377209 | Msa1175100:intron | 30.0% |
| AGCACAACAAAAAATTCCAT+TGG | + | chr8_1:6377271-6377290 | None:intergenic | 30.0% | |
| !!! | TGGAATTTTTTGTTGTGCTT+AGG | - | chr8_1:6377272-6377291 | Msa1175100:intron | 30.0% |
| !!! | GGAATTTTTTGTTGTGCTTA+GGG | - | chr8_1:6377273-6377292 | Msa1175100:intron | 30.0% |
| ! | AGTTGGTTTCAAATTGCAAA+AGG | - | chr8_1:6377325-6377344 | Msa1175100:intron | 30.0% |
| ! | GTTGGTTTCAAATTGCAAAA+GGG | - | chr8_1:6377326-6377345 | Msa1175100:intron | 30.0% |
| !! | GAAATTGATGATGCAATTGA+AGG | - | chr8_1:6377352-6377371 | Msa1175100:CDS | 30.0% |
| TAAAATGAAAAATGTGCTGC+AGG | + | chr8_1:6377549-6377568 | None:intergenic | 30.0% | |
| AAGAAGATGAGATAATAAGG+AGG | + | chr8_1:6376323-6376342 | None:intergenic | 30.0% | |
| ATTCTTCAAGAACAAGAAAG+AGG | + | chr8_1:6376352-6376371 | None:intergenic | 30.0% | |
| !! | GATTTTAACCTTGTTCTTGA+TGG | + | chr8_1:6376536-6376555 | None:intergenic | 30.0% |
| GTCCCTTAGAAAAAACTATA+AGG | - | chr8_1:6376730-6376749 | Msa1175100:intron | 30.0% | |
| ACTATAAGGTACGTCAAAAT+TGG | - | chr8_1:6376744-6376763 | Msa1175100:intron | 30.0% | |
| ! | AGTGGAGAAATAATTTGTGA+AGG | - | chr8_1:6376951-6376970 | Msa1175100:CDS | 30.0% |
| ! | GTGGAGAAATAATTTGTGAA+GGG | - | chr8_1:6376952-6376971 | Msa1175100:CDS | 30.0% |
| TAGACAAATTTCAAGACCAA+CGG | - | chr8_1:6376995-6377014 | Msa1175100:intron | 30.0% | |
| ! | ATGACAATTTTATTCTTCGG+CGG | - | chr8_1:6377097-6377116 | Msa1175100:intron | 30.0% |
| TGCTACCAGTTAAAATCTTT+CGG | - | chr8_1:6377125-6377144 | Msa1175100:intron | 30.0% | |
| AAATGTCGATGAGGTTAATT+TGG | - | chr8_1:6377153-6377172 | Msa1175100:intron | 30.0% | |
| !! | AGGTTAATTTGGTATTTTCG+TGG | - | chr8_1:6377164-6377183 | Msa1175100:intron | 30.0% |
| ! | TTTCTAGCATTCTTTGATGT+CGG | - | chr8_1:6377190-6377209 | Msa1175100:intron | 30.0% |
| AGCACAACAAAAAATTCCAT+TGG | + | chr8_1:6377271-6377290 | None:intergenic | 30.0% | |
| !!! | TGGAATTTTTTGTTGTGCTT+AGG | - | chr8_1:6377272-6377291 | Msa1175100:intron | 30.0% |
| !!! | GGAATTTTTTGTTGTGCTTA+GGG | - | chr8_1:6377273-6377292 | Msa1175100:intron | 30.0% |
| ! | AGTTGGTTTCAAATTGCAAA+AGG | - | chr8_1:6377325-6377344 | Msa1175100:intron | 30.0% |
| ! | GTTGGTTTCAAATTGCAAAA+GGG | - | chr8_1:6377326-6377345 | Msa1175100:intron | 30.0% |
| !! | GAAATTGATGATGCAATTGA+AGG | - | chr8_1:6377352-6377371 | Msa1175100:CDS | 30.0% |
| TAAAATGAAAAATGTGCTGC+AGG | + | chr8_1:6377549-6377568 | None:intergenic | 30.0% | |
| !!! | CCAACTGTTGACTTTTTCTT+TGG | + | chr8_1:6376487-6376506 | None:intergenic | 35.0% |
| CCAAAGAAAAAGTCAACAGT+TGG | - | chr8_1:6376484-6376503 | Msa1175100:CDS | 35.0% | |
| !!! | CCTAGCCTATTTTTACTACT+AGG | + | chr8_1:6376831-6376850 | None:intergenic | 35.0% |
| CCTAGTAGTAAAAATAGGCT+AGG | - | chr8_1:6376828-6376847 | Msa1175100:intron | 35.0% | |
| ! | TTTTATGAGGATGAGTCTCA+AGG | - | chr8_1:6376906-6376925 | Msa1175100:CDS | 35.0% |
| ! | TTATTTCTCCACTCTCATCT+TGG | + | chr8_1:6376944-6376963 | None:intergenic | 35.0% |
| ! | ATTTGTGAAGGGTATGATGA+AGG | - | chr8_1:6376963-6376982 | Msa1175100:intron | 35.0% |
| ! | TTTGTGAAGGGTATGATGAA+GGG | - | chr8_1:6376964-6376983 | Msa1175100:intron | 35.0% |
| TACCAGTTAAAATCTTTCGG+CGG | - | chr8_1:6377128-6377147 | Msa1175100:intron | 35.0% | |
| !! | ATTGATGATGCAATTGAAGG+TGG | - | chr8_1:6377355-6377374 | Msa1175100:CDS | 35.0% |
| TCAAATAGCACATGTGTAGT+AGG | - | chr8_1:6377517-6377536 | Msa1175100:five_prime_UTR | 35.0% | |
| !!! | CCAACTGTTGACTTTTTCTT+TGG | + | chr8_1:6376487-6376506 | None:intergenic | 35.0% |
| CCAAAGAAAAAGTCAACAGT+TGG | - | chr8_1:6376484-6376503 | Msa1175100:CDS | 35.0% | |
| !!! | CCTAGCCTATTTTTACTACT+AGG | + | chr8_1:6376831-6376850 | None:intergenic | 35.0% |
| CCTAGTAGTAAAAATAGGCT+AGG | - | chr8_1:6376828-6376847 | Msa1175100:intron | 35.0% | |
| ! | TTTTATGAGGATGAGTCTCA+AGG | - | chr8_1:6376906-6376925 | Msa1175100:CDS | 35.0% |
| ! | TTATTTCTCCACTCTCATCT+TGG | + | chr8_1:6376944-6376963 | None:intergenic | 35.0% |
| ! | ATTTGTGAAGGGTATGATGA+AGG | - | chr8_1:6376963-6376982 | Msa1175100:intron | 35.0% |
| ! | TTTGTGAAGGGTATGATGAA+GGG | - | chr8_1:6376964-6376983 | Msa1175100:intron | 35.0% |
| TACCAGTTAAAATCTTTCGG+CGG | - | chr8_1:6377128-6377147 | Msa1175100:intron | 35.0% | |
| !! | ATTGATGATGCAATTGAAGG+TGG | - | chr8_1:6377355-6377374 | Msa1175100:CDS | 35.0% |
| TCAAATAGCACATGTGTAGT+AGG | - | chr8_1:6377517-6377536 | Msa1175100:five_prime_UTR | 35.0% | |
| CTTCAAGAACAAGAAAGAGG+TGG | + | chr8_1:6376349-6376368 | None:intergenic | 40.0% | |
| ! | GCTGTGATTTTCAATACCAC+TGG | + | chr8_1:6376511-6376530 | None:intergenic | 40.0% |
| ! | ATTTGCTACCAAGATGAGAG+TGG | - | chr8_1:6376933-6376952 | Msa1175100:CDS | 40.0% |
| ! | TACCTTTTGTGATGAACCGT+TGG | + | chr8_1:6377014-6377033 | None:intergenic | 40.0% |
| !! | AACCGCCGAAAGATTTTAAC+TGG | + | chr8_1:6377133-6377152 | None:intergenic | 40.0% |
| CAAAGCTATGAGTGAGACAA+AGG | + | chr8_1:6377448-6377467 | None:intergenic | 40.0% | |
| ! | TTGTCTCACTCATAGCTTTG+AGG | - | chr8_1:6377448-6377467 | Msa1175100:CDS | 40.0% |
| CTTCAAGAACAAGAAAGAGG+TGG | + | chr8_1:6376349-6376368 | None:intergenic | 40.0% | |
| ! | GCTGTGATTTTCAATACCAC+TGG | + | chr8_1:6376511-6376530 | None:intergenic | 40.0% |
| ! | ATTTGCTACCAAGATGAGAG+TGG | - | chr8_1:6376933-6376952 | Msa1175100:CDS | 40.0% |
| ! | TACCTTTTGTGATGAACCGT+TGG | + | chr8_1:6377014-6377033 | None:intergenic | 40.0% |
| !! | AACCGCCGAAAGATTTTAAC+TGG | + | chr8_1:6377133-6377152 | None:intergenic | 40.0% |
| CAAAGCTATGAGTGAGACAA+AGG | + | chr8_1:6377448-6377467 | None:intergenic | 40.0% | |
| ! | TTGTCTCACTCATAGCTTTG+AGG | - | chr8_1:6377448-6377467 | Msa1175100:CDS | 40.0% |
| !! | CTTTGGAGCATAGCATCGTT+TGG | + | chr8_1:6376470-6376489 | None:intergenic | 45.0% |
| AAAGTCAACAGTTGGTCCAG+TGG | - | chr8_1:6376492-6376511 | Msa1175100:CDS | 45.0% | |
| CACAGCATCCATCAAGAACA+AGG | - | chr8_1:6376525-6376544 | Msa1175100:CDS | 45.0% | |
| GACCAACGGTTCATCACAAA+AGG | - | chr8_1:6377009-6377028 | Msa1175100:intron | 45.0% | |
| !! | CTTTGGAGCATAGCATCGTT+TGG | + | chr8_1:6376470-6376489 | None:intergenic | 45.0% |
| AAAGTCAACAGTTGGTCCAG+TGG | - | chr8_1:6376492-6376511 | Msa1175100:CDS | 45.0% | |
| CACAGCATCCATCAAGAACA+AGG | - | chr8_1:6376525-6376544 | Msa1175100:CDS | 45.0% | |
| GACCAACGGTTCATCACAAA+AGG | - | chr8_1:6377009-6377028 | Msa1175100:intron | 45.0% | |
| TCGGCGGTTAAATGTCGATG+AGG | - | chr8_1:6377144-6377163 | Msa1175100:intron | 50.0% | |
| TGAAGGTGGTCGTTTGCAAG+AGG | - | chr8_1:6377369-6377388 | Msa1175100:CDS | 50.0% | |
| TCGGCGGTTAAATGTCGATG+AGG | - | chr8_1:6377144-6377163 | Msa1175100:intron | 50.0% | |
| TGAAGGTGGTCGTTTGCAAG+AGG | - | chr8_1:6377369-6377388 | Msa1175100:CDS | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_1 | gene | 6376306 | 6377576 | 6376306 | ID=Msa1175100;Name=Msa1175100 |
| chr8_1 | mRNA | 6376306 | 6377576 | 6376306 | ID=Msa1175100-mRNA-1;Parent=Msa1175100;Name=Msa1175100-mRNA-1;_AED=0.06;_eAED=0.06;_QI=73|1|1|1|1|1|3|174|134 |
| chr8_1 | exon | 6376306 | 6376588 | 6376306 | ID=Msa1175100-mRNA-1:exon:2207;Parent=Msa1175100-mRNA-1 |
| chr8_1 | exon | 6376852 | 6376979 | 6376852 | ID=Msa1175100-mRNA-1:exon:2206;Parent=Msa1175100-mRNA-1 |
| chr8_1 | exon | 6377336 | 6377576 | 6377336 | ID=Msa1175100-mRNA-1:exon:2205;Parent=Msa1175100-mRNA-1 |
| chr8_1 | five_prime_UTR | 6377504 | 6377576 | 6377504 | ID=Msa1175100-mRNA-1:five_prime_utr;Parent=Msa1175100-mRNA-1 |
| chr8_1 | CDS | 6377336 | 6377503 | 6377336 | ID=Msa1175100-mRNA-1:cds;Parent=Msa1175100-mRNA-1 |
| chr8_1 | CDS | 6376852 | 6376979 | 6376852 | ID=Msa1175100-mRNA-1:cds;Parent=Msa1175100-mRNA-1 |
| chr8_1 | CDS | 6376480 | 6376588 | 6376480 | ID=Msa1175100-mRNA-1:cds;Parent=Msa1175100-mRNA-1 |
| chr8_1 | three_prime_UTR | 6376306 | 6376479 | 6376306 | ID=Msa1175100-mRNA-1:three_prime_utr;Parent=Msa1175100-mRNA-1 |
| Gene Sequence |
| Protein sequence |
