Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1234470 | XP_003627446.1 | 96.269 | 134 | 4 | 1 | 1 | 134 | 1 | 133 | 6.88e-90 | 266 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0026750 | Msa1234470 | 0.829894 | 3.986978e-55 | -8.615850e-47 |
| Msa0042490 | Msa1234470 | -0.802536 | 5.354354e-49 | -8.615850e-47 |
| Msa0051960 | Msa1234470 | 0.803720 | 3.046861e-49 | -8.615850e-47 |
| Msa0081020 | Msa1234470 | 0.806875 | 6.650093e-50 | -8.615850e-47 |
| Msa0095940 | Msa1234470 | 0.805467 | 1.316493e-49 | -8.615850e-47 |
| Msa0101960 | Msa1234470 | 0.814400 | 1.570631e-51 | -8.615850e-47 |
| Msa0108760 | Msa1234470 | 0.802065 | 6.695002e-49 | -8.615850e-47 |
| Msa0613420 | Msa1234470 | 0.811900 | 5.556205e-51 | -8.615850e-47 |
| Msa0641130 | Msa1234470 | 0.817411 | 3.343862e-52 | -8.615850e-47 |
| Msa0687210 | Msa1234470 | 0.811557 | 6.597651e-51 | -8.615850e-47 |
| Msa0833270 | Msa1234470 | 0.819127 | 1.367274e-52 | -8.615850e-47 |
| Msa0836180 | Msa1234470 | 0.813769 | 2.164391e-51 | -8.615850e-47 |
| Msa0168310 | Msa1234470 | 0.814999 | 1.157231e-51 | -8.615850e-47 |
| Msa0215820 | Msa1234470 | 0.809025 | 2.320345e-50 | -8.615850e-47 |
| Msa1234470 | Msa1238600 | 0.819358 | 1.211034e-52 | -8.615850e-47 |
| Msa1234470 | Msa1256060 | 0.842514 | 2.467931e-58 | -8.615850e-47 |
| Msa1234470 | Msa1257750 | 0.818270 | 2.139657e-52 | -8.615850e-47 |
| Msa1234470 | Msa1289050 | 0.802134 | 6.480387e-49 | -8.615850e-47 |
| Msa1234470 | Msa1289090 | 0.810652 | 1.036193e-50 | -8.615850e-47 |
| Msa1234470 | Msa1306830 | 0.803083 | 4.128245e-49 | -8.615850e-47 |
| Msa1234470 | Msa1306960 | 0.983966 | 3.288022e-159 | -8.615850e-47 |
| Msa1234470 | Msa1315480 | 0.924422 | 7.193014e-90 | -8.615850e-47 |
| Msa1234470 | Msa1362290 | 0.801628 | 8.231088e-49 | -8.615850e-47 |
| Msa1234470 | Msa1419840 | 0.807816 | 4.202591e-50 | -8.615850e-47 |
| Msa1234470 | Msa1436590 | 0.805749 | 1.148792e-49 | -8.615850e-47 |
| Msa1234470 | Msa1450440 | 0.813827 | 2.101307e-51 | -8.615850e-47 |
| Msa1042580 | Msa1234470 | 0.818369 | 2.032019e-52 | -8.615850e-47 |
| Msa1069890 | Msa1234470 | 0.801104 | 1.053753e-48 | -8.615850e-47 |
| Msa0277960 | Msa1234470 | 0.809270 | 2.056002e-50 | -8.615850e-47 |
| Msa0282780 | Msa1234470 | 0.838393 | 2.953167e-57 | -8.615850e-47 |
| Msa0342980 | Msa1234470 | 0.829037 | 6.439939e-55 | -8.615850e-47 |
| Msa0349340 | Msa1234470 | 0.823985 | 1.031089e-53 | -8.615850e-47 |
| Msa0351430 | Msa1234470 | 0.822700 | 2.058263e-53 | -8.615850e-47 |
| Msa0351470 | Msa1234470 | 0.815530 | 8.819512e-52 | -8.615850e-47 |
| Msa1122150 | Msa1234470 | 0.818267 | 2.143102e-52 | -8.615850e-47 |
| Msa1140630 | Msa1234470 | 0.848367 | 6.412916e-60 | -8.615850e-47 |
| Msa1159470 | Msa1234470 | 0.822165 | 2.741118e-53 | -8.615850e-47 |
| Msa1160560 | Msa1234470 | 0.805920 | 1.057366e-49 | -8.615850e-47 |
| Msa1175100 | Msa1234470 | 0.988891 | 7.884699e-176 | -8.615850e-47 |
| Msa1213890 | Msa1234470 | 0.818923 | 1.521230e-52 | -8.615850e-47 |
| Msa1218570 | Msa1234470 | 0.808916 | 2.448354e-50 | -8.615850e-47 |
| Msa0545050 | Msa1234470 | 0.818512 | 1.885609e-52 | -8.615850e-47 |
| Msa0576900 | Msa1234470 | 0.830809 | 2.381895e-55 | -8.615850e-47 |
| Msa0600590 | Msa1234470 | 0.806993 | 6.279325e-50 | -8.615850e-47 |
| Msa0880800 | Msa1234470 | 0.809474 | 1.858756e-50 | -8.615850e-47 |
| Msa0943970 | Msa1234470 | 0.829989 | 3.780593e-55 | -8.615850e-47 |
| Msa0944020 | Msa1234470 | 0.827145 | 1.838496e-54 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1234470 | MtrunA17_Chr8g0345171 | 96.269 | 134 | 4 | 1 | 1 | 134 | 1 | 133 | 6.33e-94 | 266 |
| Msa1234470 | MtrunA17_Chr7g0276621 | 55.469 | 128 | 43 | 6 | 1 | 123 | 23 | 141 | 1.01e-37 | 125 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1234470 | AT3G14280.1 | 39.815 | 108 | 57 | 3 | 21 | 128 | 21 | 120 | 2.84e-15 | 68.2 |
Find 30 sgRNAs with CRISPR-Local
Find 140 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TAATTTGAATTGCAATAAAA+TGG | 0.221285 | 8_2:+11806854 | Msa1234470:exon |
| TTCTTGAAGAATTAGCTTAA+TGG | 0.238281 | 8_2:+11805819 | Msa1234470:exon |
| GAATTATCATATTTCTGAAT+TGG | 0.275390 | 8_2:-11805871 | None:intergenic |
| AATTATCATATTTCTGAATT+GGG | 0.345181 | 8_2:-11805870 | None:intergenic |
| TTGTCTCACTCATAGCTTTG+AGG | 0.351441 | 8_2:+11806907 | Msa1234470:three_prime_UTR |
| GGAAGAAGATGAGATAAATA+AGG | 0.373874 | 8_2:-11805769 | None:intergenic |
| AGTTGGTTTCAAATTGCAAA+AGG | 0.405294 | 8_2:+11806784 | Msa1234470:CDS |
| CTTTGGAGCATAGCATCGTT+TGG | 0.411384 | 8_2:-11805926 | None:intergenic |
| TGAATCTTCTAAAACAAAGT+TGG | 0.441522 | 8_2:+11806767 | Msa1234470:CDS |
| CTTGAAATTTGTCTATAAGA+TGG | 0.456782 | 8_2:-11806446 | None:intergenic |
| TCAAATAGCACATGTGTAGT+AGG | 0.464126 | 8_2:+11806976 | Msa1234470:three_prime_UTR |
| AGAGGTGGAAGAAGAAGATG+TGG | 0.466622 | 8_2:-11805790 | None:intergenic |
| TTATTTCTCCACTCTCATCT+TGG | 0.480024 | 8_2:-11806400 | None:intergenic |
| GTTGGTTTCAAATTGCAAAA+GGG | 0.500062 | 8_2:+11806785 | Msa1234470:CDS |
| ATTTGTGAAGGGTATGATGA+AGG | 0.501766 | 8_2:+11806422 | Msa1234470:CDS |
| GACCAACGGTTCATCACAAA+AGG | 0.504204 | 8_2:+11806468 | Msa1234470:CDS |
| GAAATTGATGATGCAATTGA+AGG | 0.528412 | 8_2:+11806811 | Msa1234470:CDS |
| GTGGAGAAATAATTTGTGAA+GGG | 0.550320 | 8_2:+11806411 | Msa1234470:CDS |
| AGAAGATGAGATAAATAAGG+AGG | 0.555381 | 8_2:-11805766 | None:intergenic |
| AGTGGAGAAATAATTTGTGA+AGG | 0.561503 | 8_2:+11806410 | Msa1234470:CDS |
| TTTGTGAAGGGTATGATGAA+GGG | 0.566441 | 8_2:+11806423 | Msa1234470:CDS |
| CACAGCATCCATCAAGAACA+AGG | 0.570428 | 8_2:+11805984 | Msa1234470:CDS |
| ATTCTTCAAGAACAAGAAAG+AGG | 0.573168 | 8_2:-11805808 | None:intergenic |
| TAGACAAATTTCAAGACCAA+CGG | 0.578411 | 8_2:+11806454 | Msa1234470:CDS |
| TGAAGGTGGTCGTTTGCAAG+AGG | 0.580771 | 8_2:+11806828 | Msa1234470:CDS |
| AAAGTCAACAGTTGGTCCAG+TGG | 0.602548 | 8_2:+11805951 | Msa1234470:CDS |
| CAAAGCTATGAGTGAGACAA+AGG | 0.622287 | 8_2:-11806904 | None:intergenic |
| ATTTGCTACCAAGATGAGAG+TGG | 0.633835 | 8_2:+11806392 | Msa1234470:CDS |
| CTTCAAGAACAAGAAAGAGG+TGG | 0.639571 | 8_2:-11805805 | None:intergenic |
| ATTGATGATGCAATTGAAGG+TGG | 0.706142 | 8_2:+11806814 | Msa1234470:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATTATCATATTTCTGAATT+GGG | - | chr8_2:11805873-11805892 | None:intergenic | 15.0% |
| !! | AAGAATAGATAAAAGATAAT+AGG | - | chr8_2:11806017-11806036 | None:intergenic | 15.0% |
| !! | ATAGATATATGTATATCAAT+TGG | - | chr8_2:11806060-11806079 | None:intergenic | 15.0% |
| !! | AAAAAAGATGAAAAAAACTT+TGG | + | chr8_2:11806106-11806125 | Msa1234470:intron | 15.0% |
| !!! | AGATAAGTTTTTTCTTTTTT+TGG | + | chr8_2:11806226-11806245 | Msa1234470:intron | 15.0% |
| !!! | AGAATAAAAATGTCATTTTA+TGG | - | chr8_2:11806552-11806571 | None:intergenic | 15.0% |
| !!! | AAAATGACATTTTTATTCTT+CGG | + | chr8_2:11806553-11806572 | Msa1234470:intron | 15.0% |
| !! | TAATTTGAATTGCAATAAAA+TGG | + | chr8_2:11806854-11806873 | Msa1234470:exon | 15.0% |
| !!! | AATTATCATATTTCTGAATT+GGG | - | chr8_2:11805873-11805892 | None:intergenic | 15.0% |
| !! | AAGAATAGATAAAAGATAAT+AGG | - | chr8_2:11806017-11806036 | None:intergenic | 15.0% |
| !! | ATAGATATATGTATATCAAT+TGG | - | chr8_2:11806060-11806079 | None:intergenic | 15.0% |
| !! | AAAAAAGATGAAAAAAACTT+TGG | + | chr8_2:11806106-11806125 | Msa1234470:intron | 15.0% |
| !!! | AGATAAGTTTTTTCTTTTTT+TGG | + | chr8_2:11806226-11806245 | Msa1234470:intron | 15.0% |
| !!! | AGAATAAAAATGTCATTTTA+TGG | - | chr8_2:11806552-11806571 | None:intergenic | 15.0% |
| !!! | AAAATGACATTTTTATTCTT+CGG | + | chr8_2:11806553-11806572 | Msa1234470:intron | 15.0% |
| !! | TAATTTGAATTGCAATAAAA+TGG | + | chr8_2:11806854-11806873 | Msa1234470:exon | 15.0% |
| !!! | GAATTATCATATTTCTGAAT+TGG | - | chr8_2:11805874-11805893 | None:intergenic | 20.0% |
| !!! | AAAAAAACTTTGGTTAGTTA+TGG | + | chr8_2:11806116-11806135 | Msa1234470:intron | 20.0% |
| !!! | TACCTTATAGTTTTTTCTAA+GGG | - | chr8_2:11806194-11806213 | None:intergenic | 20.0% |
| !!! | TGGATATATCTACTTTTTAT+TGG | + | chr8_2:11806246-11806265 | Msa1234470:intron | 20.0% |
| !! | AATTGATGTTTATATTCTGA+AGG | + | chr8_2:11806516-11806535 | Msa1234470:intron | 20.0% |
| !! | ATATAAATATGTCTTACCAA+TGG | + | chr8_2:11806711-11806730 | Msa1234470:intron | 20.0% |
| !!! | GAATTATCATATTTCTGAAT+TGG | - | chr8_2:11805874-11805893 | None:intergenic | 20.0% |
| !!! | AAAAAAACTTTGGTTAGTTA+TGG | + | chr8_2:11806116-11806135 | Msa1234470:intron | 20.0% |
| !!! | TACCTTATAGTTTTTTCTAA+GGG | - | chr8_2:11806194-11806213 | None:intergenic | 20.0% |
| !!! | TGGATATATCTACTTTTTAT+TGG | + | chr8_2:11806246-11806265 | Msa1234470:intron | 20.0% |
| !! | AATTGATGTTTATATTCTGA+AGG | + | chr8_2:11806516-11806535 | Msa1234470:intron | 20.0% |
| !! | ATATAAATATGTCTTACCAA+TGG | + | chr8_2:11806711-11806730 | Msa1234470:intron | 20.0% |
| ! | AATAAGGAGGAAAAATGAAA+TGG | - | chr8_2:11805756-11805775 | None:intergenic | 25.0% |
| !! | TTCTTGAAGAATTAGCTTAA+TGG | + | chr8_2:11805819-11805838 | Msa1234470:exon | 25.0% |
| !! | TTTGGTTAGTTATGGAAATT+TGG | + | chr8_2:11806124-11806143 | Msa1234470:intron | 25.0% |
| ! | TTTGTCTCTAGTTATATCTT+TGG | + | chr8_2:11806163-11806182 | Msa1234470:intron | 25.0% |
| !!! | GTACCTTATAGTTTTTTCTA+AGG | - | chr8_2:11806195-11806214 | None:intergenic | 25.0% |
| ! | TTTCTCCTAGTAGTAAAAAT+AGG | + | chr8_2:11806282-11806301 | Msa1234470:intron | 25.0% |
| ! | TGTCTAATTTGATACTAAAC+AGG | + | chr8_2:11806340-11806359 | Msa1234470:intron | 25.0% |
| !!! | TACTAAACAGGTTTTTTATG+AGG | + | chr8_2:11806352-11806371 | Msa1234470:intron | 25.0% |
| ! | CTTGAAATTTGTCTATAAGA+TGG | - | chr8_2:11806449-11806468 | None:intergenic | 25.0% |
| !!! | TGAATCTTCTAAAACAAAGT+TGG | + | chr8_2:11806767-11806786 | Msa1234470:CDS | 25.0% |
| ! | AATAAGGAGGAAAAATGAAA+TGG | - | chr8_2:11805756-11805775 | None:intergenic | 25.0% |
| !! | TTCTTGAAGAATTAGCTTAA+TGG | + | chr8_2:11805819-11805838 | Msa1234470:exon | 25.0% |
| !! | TTTGGTTAGTTATGGAAATT+TGG | + | chr8_2:11806124-11806143 | Msa1234470:intron | 25.0% |
| ! | TTTGTCTCTAGTTATATCTT+TGG | + | chr8_2:11806163-11806182 | Msa1234470:intron | 25.0% |
| !!! | GTACCTTATAGTTTTTTCTA+AGG | - | chr8_2:11806195-11806214 | None:intergenic | 25.0% |
| ! | TTTCTCCTAGTAGTAAAAAT+AGG | + | chr8_2:11806282-11806301 | Msa1234470:intron | 25.0% |
| ! | TGTCTAATTTGATACTAAAC+AGG | + | chr8_2:11806340-11806359 | Msa1234470:intron | 25.0% |
| !!! | TACTAAACAGGTTTTTTATG+AGG | + | chr8_2:11806352-11806371 | Msa1234470:intron | 25.0% |
| ! | CTTGAAATTTGTCTATAAGA+TGG | - | chr8_2:11806449-11806468 | None:intergenic | 25.0% |
| !!! | TGAATCTTCTAAAACAAAGT+TGG | + | chr8_2:11806767-11806786 | Msa1234470:CDS | 25.0% |
| AGAAGATGAGATAAATAAGG+AGG | - | chr8_2:11805769-11805788 | None:intergenic | 30.0% | |
| GGAAGAAGATGAGATAAATA+AGG | - | chr8_2:11805772-11805791 | None:intergenic | 30.0% | |
| ATTCTTCAAGAACAAGAAAG+AGG | - | chr8_2:11805811-11805830 | None:intergenic | 30.0% | |
| !! | GATTTTAACCTTGTTCTTGA+TGG | - | chr8_2:11805995-11806014 | None:intergenic | 30.0% |
| GTCCCTTAGAAAAAACTATA+AGG | + | chr8_2:11806189-11806208 | Msa1234470:intron | 30.0% | |
| ACTATAAGGTACGTCAAAAT+TGG | + | chr8_2:11806203-11806222 | Msa1234470:intron | 30.0% | |
| ! | AGTGGAGAAATAATTTGTGA+AGG | + | chr8_2:11806410-11806429 | Msa1234470:CDS | 30.0% |
| ! | GTGGAGAAATAATTTGTGAA+GGG | + | chr8_2:11806411-11806430 | Msa1234470:CDS | 30.0% |
| TAGACAAATTTCAAGACCAA+CGG | + | chr8_2:11806454-11806473 | Msa1234470:CDS | 30.0% | |
| ! | ATGACATTTTTATTCTTCGG+CGG | + | chr8_2:11806556-11806575 | Msa1234470:intron | 30.0% |
| ! | TGCTACCAGTTAAAATCTTT+TGG | + | chr8_2:11806584-11806603 | Msa1234470:intron | 30.0% |
| ! | TACCAGTTAAAATCTTTTGG+CGG | + | chr8_2:11806587-11806606 | Msa1234470:intron | 30.0% |
| AAATGTCGATGAGGTTAATT+TGG | + | chr8_2:11806612-11806631 | Msa1234470:intron | 30.0% | |
| !! | AGGTTAATTTGGTATTTTCG+TGG | + | chr8_2:11806623-11806642 | Msa1234470:intron | 30.0% |
| ! | TTTCTAGCATTCTTTGATGT+CGG | + | chr8_2:11806649-11806668 | Msa1234470:intron | 30.0% |
| AGCACAACAAAAAATTCCAT+TGG | - | chr8_2:11806730-11806749 | None:intergenic | 30.0% | |
| !!! | TGGAATTTTTTGTTGTGCTT+AGG | + | chr8_2:11806731-11806750 | Msa1234470:intron | 30.0% |
| !!! | GGAATTTTTTGTTGTGCTTA+GGG | + | chr8_2:11806732-11806751 | Msa1234470:intron | 30.0% |
| ! | AGTTGGTTTCAAATTGCAAA+AGG | + | chr8_2:11806784-11806803 | Msa1234470:CDS | 30.0% |
| ! | GTTGGTTTCAAATTGCAAAA+GGG | + | chr8_2:11806785-11806804 | Msa1234470:CDS | 30.0% |
| !! | GAAATTGATGATGCAATTGA+AGG | + | chr8_2:11806811-11806830 | Msa1234470:CDS | 30.0% |
| TAAAATGAAAAATGTGCTGC+AGG | - | chr8_2:11807008-11807027 | None:intergenic | 30.0% | |
| AGAAGATGAGATAAATAAGG+AGG | - | chr8_2:11805769-11805788 | None:intergenic | 30.0% | |
| GGAAGAAGATGAGATAAATA+AGG | - | chr8_2:11805772-11805791 | None:intergenic | 30.0% | |
| ATTCTTCAAGAACAAGAAAG+AGG | - | chr8_2:11805811-11805830 | None:intergenic | 30.0% | |
| !! | GATTTTAACCTTGTTCTTGA+TGG | - | chr8_2:11805995-11806014 | None:intergenic | 30.0% |
| GTCCCTTAGAAAAAACTATA+AGG | + | chr8_2:11806189-11806208 | Msa1234470:intron | 30.0% | |
| ACTATAAGGTACGTCAAAAT+TGG | + | chr8_2:11806203-11806222 | Msa1234470:intron | 30.0% | |
| ! | AGTGGAGAAATAATTTGTGA+AGG | + | chr8_2:11806410-11806429 | Msa1234470:CDS | 30.0% |
| ! | GTGGAGAAATAATTTGTGAA+GGG | + | chr8_2:11806411-11806430 | Msa1234470:CDS | 30.0% |
| TAGACAAATTTCAAGACCAA+CGG | + | chr8_2:11806454-11806473 | Msa1234470:CDS | 30.0% | |
| ! | ATGACATTTTTATTCTTCGG+CGG | + | chr8_2:11806556-11806575 | Msa1234470:intron | 30.0% |
| ! | TGCTACCAGTTAAAATCTTT+TGG | + | chr8_2:11806584-11806603 | Msa1234470:intron | 30.0% |
| ! | TACCAGTTAAAATCTTTTGG+CGG | + | chr8_2:11806587-11806606 | Msa1234470:intron | 30.0% |
| AAATGTCGATGAGGTTAATT+TGG | + | chr8_2:11806612-11806631 | Msa1234470:intron | 30.0% | |
| !! | AGGTTAATTTGGTATTTTCG+TGG | + | chr8_2:11806623-11806642 | Msa1234470:intron | 30.0% |
| ! | TTTCTAGCATTCTTTGATGT+CGG | + | chr8_2:11806649-11806668 | Msa1234470:intron | 30.0% |
| AGCACAACAAAAAATTCCAT+TGG | - | chr8_2:11806730-11806749 | None:intergenic | 30.0% | |
| !!! | TGGAATTTTTTGTTGTGCTT+AGG | + | chr8_2:11806731-11806750 | Msa1234470:intron | 30.0% |
| !!! | GGAATTTTTTGTTGTGCTTA+GGG | + | chr8_2:11806732-11806751 | Msa1234470:intron | 30.0% |
| ! | AGTTGGTTTCAAATTGCAAA+AGG | + | chr8_2:11806784-11806803 | Msa1234470:CDS | 30.0% |
| ! | GTTGGTTTCAAATTGCAAAA+GGG | + | chr8_2:11806785-11806804 | Msa1234470:CDS | 30.0% |
| !! | GAAATTGATGATGCAATTGA+AGG | + | chr8_2:11806811-11806830 | Msa1234470:CDS | 30.0% |
| TAAAATGAAAAATGTGCTGC+AGG | - | chr8_2:11807008-11807027 | None:intergenic | 30.0% | |
| !!! | CCAACTGTTGACTTTTTCTT+TGG | - | chr8_2:11805946-11805965 | None:intergenic | 35.0% |
| CCAAAGAAAAAGTCAACAGT+TGG | + | chr8_2:11805943-11805962 | Msa1234470:CDS | 35.0% | |
| !!! | CCTAGCCTATTTTTACTACT+AGG | - | chr8_2:11806290-11806309 | None:intergenic | 35.0% |
| CCTAGTAGTAAAAATAGGCT+AGG | + | chr8_2:11806287-11806306 | Msa1234470:intron | 35.0% | |
| ! | TTTTATGAGGATGAGTCTCA+AGG | + | chr8_2:11806365-11806384 | Msa1234470:CDS | 35.0% |
| ! | TTATTTCTCCACTCTCATCT+TGG | - | chr8_2:11806403-11806422 | None:intergenic | 35.0% |
| ! | ATTTGTGAAGGGTATGATGA+AGG | + | chr8_2:11806422-11806441 | Msa1234470:CDS | 35.0% |
| ! | TTTGTGAAGGGTATGATGAA+GGG | + | chr8_2:11806423-11806442 | Msa1234470:CDS | 35.0% |
| !! | AACCGCCAAAAGATTTTAAC+TGG | - | chr8_2:11806592-11806611 | None:intergenic | 35.0% |
| !! | ATTGATGATGCAATTGAAGG+TGG | + | chr8_2:11806814-11806833 | Msa1234470:CDS | 35.0% |
| TCAAATAGCACATGTGTAGT+AGG | + | chr8_2:11806976-11806995 | Msa1234470:three_prime_UTR | 35.0% | |
| !!! | CCAACTGTTGACTTTTTCTT+TGG | - | chr8_2:11805946-11805965 | None:intergenic | 35.0% |
| CCAAAGAAAAAGTCAACAGT+TGG | + | chr8_2:11805943-11805962 | Msa1234470:CDS | 35.0% | |
| !!! | CCTAGCCTATTTTTACTACT+AGG | - | chr8_2:11806290-11806309 | None:intergenic | 35.0% |
| CCTAGTAGTAAAAATAGGCT+AGG | + | chr8_2:11806287-11806306 | Msa1234470:intron | 35.0% | |
| ! | TTTTATGAGGATGAGTCTCA+AGG | + | chr8_2:11806365-11806384 | Msa1234470:CDS | 35.0% |
| ! | TTATTTCTCCACTCTCATCT+TGG | - | chr8_2:11806403-11806422 | None:intergenic | 35.0% |
| ! | ATTTGTGAAGGGTATGATGA+AGG | + | chr8_2:11806422-11806441 | Msa1234470:CDS | 35.0% |
| ! | TTTGTGAAGGGTATGATGAA+GGG | + | chr8_2:11806423-11806442 | Msa1234470:CDS | 35.0% |
| !! | AACCGCCAAAAGATTTTAAC+TGG | - | chr8_2:11806592-11806611 | None:intergenic | 35.0% |
| !! | ATTGATGATGCAATTGAAGG+TGG | + | chr8_2:11806814-11806833 | Msa1234470:CDS | 35.0% |
| TCAAATAGCACATGTGTAGT+AGG | + | chr8_2:11806976-11806995 | Msa1234470:three_prime_UTR | 35.0% | |
| CTTCAAGAACAAGAAAGAGG+TGG | - | chr8_2:11805808-11805827 | None:intergenic | 40.0% | |
| ! | GCTGTGATTTTCAATACCAC+TGG | - | chr8_2:11805970-11805989 | None:intergenic | 40.0% |
| ! | ATTTGCTACCAAGATGAGAG+TGG | + | chr8_2:11806392-11806411 | Msa1234470:CDS | 40.0% |
| ! | TACCTTTTGTGATGAACCGT+TGG | - | chr8_2:11806473-11806492 | None:intergenic | 40.0% |
| CAAAGCTATGAGTGAGACAA+AGG | - | chr8_2:11806907-11806926 | None:intergenic | 40.0% | |
| ! | TTGTCTCACTCATAGCTTTG+AGG | + | chr8_2:11806907-11806926 | Msa1234470:three_prime_UTR | 40.0% |
| CTTCAAGAACAAGAAAGAGG+TGG | - | chr8_2:11805808-11805827 | None:intergenic | 40.0% | |
| ! | GCTGTGATTTTCAATACCAC+TGG | - | chr8_2:11805970-11805989 | None:intergenic | 40.0% |
| ! | ATTTGCTACCAAGATGAGAG+TGG | + | chr8_2:11806392-11806411 | Msa1234470:CDS | 40.0% |
| ! | TACCTTTTGTGATGAACCGT+TGG | - | chr8_2:11806473-11806492 | None:intergenic | 40.0% |
| CAAAGCTATGAGTGAGACAA+AGG | - | chr8_2:11806907-11806926 | None:intergenic | 40.0% | |
| ! | TTGTCTCACTCATAGCTTTG+AGG | + | chr8_2:11806907-11806926 | Msa1234470:three_prime_UTR | 40.0% |
| AGAGGTGGAAGAAGAAGATG+TGG | - | chr8_2:11805793-11805812 | None:intergenic | 45.0% | |
| !! | CTTTGGAGCATAGCATCGTT+TGG | - | chr8_2:11805929-11805948 | None:intergenic | 45.0% |
| AAAGTCAACAGTTGGTCCAG+TGG | + | chr8_2:11805951-11805970 | Msa1234470:CDS | 45.0% | |
| CACAGCATCCATCAAGAACA+AGG | + | chr8_2:11805984-11806003 | Msa1234470:CDS | 45.0% | |
| GACCAACGGTTCATCACAAA+AGG | + | chr8_2:11806468-11806487 | Msa1234470:CDS | 45.0% | |
| TTGGCGGTTAAATGTCGATG+AGG | + | chr8_2:11806603-11806622 | Msa1234470:intron | 45.0% | |
| AGAGGTGGAAGAAGAAGATG+TGG | - | chr8_2:11805793-11805812 | None:intergenic | 45.0% | |
| !! | CTTTGGAGCATAGCATCGTT+TGG | - | chr8_2:11805929-11805948 | None:intergenic | 45.0% |
| AAAGTCAACAGTTGGTCCAG+TGG | + | chr8_2:11805951-11805970 | Msa1234470:CDS | 45.0% | |
| CACAGCATCCATCAAGAACA+AGG | + | chr8_2:11805984-11806003 | Msa1234470:CDS | 45.0% | |
| GACCAACGGTTCATCACAAA+AGG | + | chr8_2:11806468-11806487 | Msa1234470:CDS | 45.0% | |
| TTGGCGGTTAAATGTCGATG+AGG | + | chr8_2:11806603-11806622 | Msa1234470:intron | 45.0% | |
| TGAAGGTGGTCGTTTGCAAG+AGG | + | chr8_2:11806828-11806847 | Msa1234470:CDS | 50.0% | |
| TGAAGGTGGTCGTTTGCAAG+AGG | + | chr8_2:11806828-11806847 | Msa1234470:CDS | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_2 | gene | 11805752 | 11807035 | 11805752 | ID=Msa1234470;Name=Msa1234470 |
| chr8_2 | mRNA | 11805752 | 11807035 | 11805752 | ID=Msa1234470-mRNA-1;Parent=Msa1234470;Name=Msa1234470-mRNA-1;_AED=0.06;_eAED=0.06;_QI=86|1|1|1|1|1|3|174|134 |
| chr8_2 | exon | 11805752 | 11806005 | 11805752 | ID=Msa1234470-mRNA-1:exon:4586;Parent=Msa1234470-mRNA-1 |
| chr8_2 | exon | 11806362 | 11806489 | 11806362 | ID=Msa1234470-mRNA-1:exon:4587;Parent=Msa1234470-mRNA-1 |
| chr8_2 | exon | 11806753 | 11807035 | 11806753 | ID=Msa1234470-mRNA-1:exon:4588;Parent=Msa1234470-mRNA-1 |
| chr8_2 | five_prime_UTR | 11805752 | 11805837 | 11805752 | ID=Msa1234470-mRNA-1:five_prime_utr;Parent=Msa1234470-mRNA-1 |
| chr8_2 | CDS | 11805838 | 11806005 | 11805838 | ID=Msa1234470-mRNA-1:cds;Parent=Msa1234470-mRNA-1 |
| chr8_2 | CDS | 11806362 | 11806489 | 11806362 | ID=Msa1234470-mRNA-1:cds;Parent=Msa1234470-mRNA-1 |
| chr8_2 | CDS | 11806753 | 11806861 | 11806753 | ID=Msa1234470-mRNA-1:cds;Parent=Msa1234470-mRNA-1 |
| chr8_2 | three_prime_UTR | 11806862 | 11807035 | 11806862 | ID=Msa1234470-mRNA-1:three_prime_utr;Parent=Msa1234470-mRNA-1 |
| Gene Sequence |
| Protein sequence |
