Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1315480 | B7FMF3 | 95.522 | 134 | 5 | 1 | 1 | 134 | 1 | 133 | 7.41e-90 | 266 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0042490 | Msa1315480 | -0.851163 | 1.061354e-60 | -8.615850e-47 |
| Msa0051960 | Msa1315480 | 0.826685 | 2.369153e-54 | -8.615850e-47 |
| Msa0078700 | Msa1315480 | 0.802412 | 5.679701e-49 | -8.615850e-47 |
| Msa0079580 | Msa1315480 | -0.830340 | 3.102712e-55 | -8.615850e-47 |
| Msa0090870 | Msa1315480 | 0.829918 | 3.934342e-55 | -8.615850e-47 |
| Msa0093950 | Msa1315480 | -0.803428 | 3.502361e-49 | -8.615850e-47 |
| Msa0095940 | Msa1315480 | 0.834660 | 2.636224e-56 | -8.615850e-47 |
| Msa0101960 | Msa1315480 | 0.835949 | 1.245417e-56 | -8.615850e-47 |
| Msa0613420 | Msa1315480 | 0.818252 | 2.160294e-52 | -8.615850e-47 |
| Msa0637590 | Msa1315480 | 0.800546 | 1.369766e-48 | -8.615850e-47 |
| Msa0641130 | Msa1315480 | 0.817328 | 3.490227e-52 | -8.615850e-47 |
| Msa0677010 | Msa1315480 | 0.806031 | 1.002020e-49 | -8.615850e-47 |
| Msa0744640 | Msa1315480 | 0.824708 | 6.972987e-54 | -8.615850e-47 |
| Msa0800180 | Msa1315480 | 0.801656 | 8.124032e-49 | -8.615850e-47 |
| Msa0833270 | Msa1315480 | 0.842476 | 2.526505e-58 | -8.615850e-47 |
| Msa0841730 | Msa1315480 | 0.824754 | 6.801837e-54 | -8.615850e-47 |
| Msa0135030 | Msa1315480 | 0.803766 | 2.980267e-49 | -8.615850e-47 |
| Msa0168310 | Msa1315480 | 0.814291 | 1.660418e-51 | -8.615850e-47 |
| Msa0171330 | Msa1315480 | 0.802034 | 6.794424e-49 | -8.615850e-47 |
| Msa0183390 | Msa1315480 | 0.851715 | 7.410141e-61 | -8.615850e-47 |
| Msa0216060 | Msa1315480 | 0.801699 | 7.960801e-49 | -8.615850e-47 |
| Msa1234470 | Msa1315480 | 0.924422 | 7.193014e-90 | -8.615850e-47 |
| Msa1238600 | Msa1315480 | 0.840976 | 6.284934e-58 | -8.615850e-47 |
| Msa1255210 | Msa1315480 | 0.824983 | 6.003465e-54 | -8.615850e-47 |
| Msa1256060 | Msa1315480 | 0.848187 | 7.191889e-60 | -8.615850e-47 |
| Msa1268420 | Msa1315480 | 0.804288 | 2.321089e-49 | -8.615850e-47 |
| Msa1289050 | Msa1315480 | 0.848322 | 6.600438e-60 | -8.615850e-47 |
| Msa1289090 | Msa1315480 | 0.858596 | 7.389687e-63 | -8.615850e-47 |
| Msa1295650 | Msa1315480 | 0.813132 | 2.987452e-51 | -8.615850e-47 |
| Msa1306830 | Msa1315480 | 0.854499 | 1.181897e-61 | -8.615850e-47 |
| Msa1306960 | Msa1315480 | 0.941959 | 1.671706e-101 | -8.615850e-47 |
| Msa1315480 | Msa1319560 | 0.804620 | 1.979585e-49 | -8.615850e-47 |
| Msa1315480 | Msa1362290 | 0.821945 | 3.082845e-53 | -8.615850e-47 |
| Msa1315480 | Msa1367790 | 0.811801 | 5.837921e-51 | -8.615850e-47 |
| Msa1315480 | Msa1389170 | 0.817437 | 3.299444e-52 | -8.615850e-47 |
| Msa1315480 | Msa1404050 | 0.810979 | 8.803036e-51 | -8.615850e-47 |
| Msa1315480 | Msa1415410 | 0.805878 | 1.079229e-49 | -8.615850e-47 |
| Msa0388010 | Msa1315480 | 0.818168 | 2.256770e-52 | -8.615850e-47 |
| Msa0984730 | Msa1315480 | 0.801910 | 7.204842e-49 | -8.615850e-47 |
| Msa1019420 | Msa1315480 | 0.804357 | 2.245334e-49 | -8.615850e-47 |
| Msa1069890 | Msa1315480 | 0.806390 | 8.419284e-50 | -8.615850e-47 |
| Msa1092310 | Msa1315480 | 0.812891 | 3.373738e-51 | -8.615850e-47 |
| Msa0282780 | Msa1315480 | 0.806615 | 7.546698e-50 | -8.615850e-47 |
| Msa0283620 | Msa1315480 | 0.805598 | 1.235648e-49 | -8.615850e-47 |
| Msa0295420 | Msa1315480 | 0.822733 | 2.022419e-53 | -8.615850e-47 |
| Msa0342980 | Msa1315480 | 0.844154 | 9.009463e-59 | -8.615850e-47 |
| Msa0355550 | Msa1315480 | 0.844539 | 7.101926e-59 | -8.615850e-47 |
| Msa1126320 | Msa1315480 | -0.800552 | 1.365893e-48 | -8.615850e-47 |
| Msa1140630 | Msa1315480 | 0.847506 | 1.108031e-59 | -8.615850e-47 |
| Msa1157670 | Msa1315480 | 0.811075 | 8.392867e-51 | -8.615850e-47 |
| Msa1167150 | Msa1315480 | -0.801696 | 7.971825e-49 | -8.615850e-47 |
| Msa1175100 | Msa1315480 | 0.940225 | 3.357260e-100 | -8.615850e-47 |
| Msa1202800 | Msa1315480 | 0.812158 | 4.879984e-51 | -8.615850e-47 |
| Msa0497120 | Msa1315480 | 0.809223 | 2.103750e-50 | -8.615850e-47 |
| Msa0517270 | Msa1315480 | 0.804178 | 2.447346e-49 | -8.615850e-47 |
| Msa0527950 | Msa1315480 | 0.818261 | 2.149686e-52 | -8.615850e-47 |
| Msa0545050 | Msa1315480 | 0.815703 | 8.068519e-52 | -8.615850e-47 |
| Msa0548650 | Msa1315480 | -0.836141 | 1.113408e-56 | -8.615850e-47 |
| Msa0558650 | Msa1315480 | 0.806195 | 9.254952e-50 | -8.615850e-47 |
| Msa0563860 | Msa1315480 | 0.835977 | 1.225490e-56 | -8.615850e-47 |
| Msa0576900 | Msa1315480 | 0.810430 | 1.157436e-50 | -8.615850e-47 |
| Msa0577490 | Msa1315480 | 0.828890 | 6.988644e-55 | -8.615850e-47 |
| Msa0600590 | Msa1315480 | 0.811012 | 8.659394e-51 | -8.615850e-47 |
| Msa0870510 | Msa1315480 | 0.818548 | 1.850773e-52 | -8.615850e-47 |
| Msa0930270 | Msa1315480 | 0.814618 | 1.405414e-51 | -8.615850e-47 |
| Msa0944020 | Msa1315480 | 0.812753 | 3.618115e-51 | -8.615850e-47 |
| Msa0966580 | Msa1315480 | 0.816530 | 5.274002e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1315480 | MtrunA17_Chr8g0345171 | 95.522 | 134 | 5 | 1 | 1 | 134 | 1 | 133 | 1.43e-93 | 266 |
| Msa1315480 | MtrunA17_Chr7g0276621 | 55.469 | 128 | 43 | 6 | 1 | 123 | 23 | 141 | 2.06e-37 | 124 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1315480 | AT3G14280.1 | 38.889 | 108 | 58 | 3 | 21 | 128 | 21 | 120 | 6.14e-15 | 67.4 |
Find 29 sgRNAs with CRISPR-Local
Find 138 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TAATTTGAATTGCAATAAAA+TGG | 0.221285 | 8_4:-14956047 | Msa1315480:exon |
| TTCTTGAAGAATTAGCTTAA+TGG | 0.238281 | 8_4:-14957082 | Msa1315480:exon |
| GAATTATCATATTTCTGAAT+TGG | 0.275390 | 8_4:+14957030 | None:intergenic |
| AAGAAGAAGATGAGATAATA+AGG | 0.331139 | 8_4:+14957119 | None:intergenic |
| AATTATCATATTTCTGAATT+GGG | 0.345181 | 8_4:+14957031 | None:intergenic |
| TTGTCTCACTCATAGCTTTG+AGG | 0.351441 | 8_4:-14955994 | Msa1315480:three_prime_UTR |
| AGTTGGTTTCAAATTGCAAA+AGG | 0.405294 | 8_4:-14956117 | Msa1315480:CDS |
| CTTTGGAGCATAGCATCGTT+TGG | 0.411384 | 8_4:+14956975 | None:intergenic |
| TGAATCTTCTAAAACAAAGT+TGG | 0.441522 | 8_4:-14956134 | Msa1315480:CDS |
| CTTGAAATTTGTCTATAAGA+TGG | 0.456782 | 8_4:+14956455 | None:intergenic |
| TCAAATAGCACATGTGTAGT+AGG | 0.464126 | 8_4:-14955925 | Msa1315480:three_prime_UTR |
| TTATTTCTCCACTCTCATCT+TGG | 0.480024 | 8_4:+14956501 | None:intergenic |
| GTTGGTTTCAAATTGCAAAA+GGG | 0.500062 | 8_4:-14956116 | Msa1315480:CDS |
| ATTTGTGAAGGGTATGATGA+AGG | 0.501766 | 8_4:-14956479 | Msa1315480:CDS |
| GACCAACGGTTCATCACAAA+AGG | 0.504204 | 8_4:-14956433 | Msa1315480:intron |
| GAAATTGATGATGCAATTGA+AGG | 0.528412 | 8_4:-14956090 | Msa1315480:CDS |
| GTGGAGAAATAATTTGTGAA+GGG | 0.550320 | 8_4:-14956490 | Msa1315480:CDS |
| AGTGGAGAAATAATTTGTGA+AGG | 0.561503 | 8_4:-14956491 | Msa1315480:CDS |
| TTTGTGAAGGGTATGATGAA+GGG | 0.566441 | 8_4:-14956478 | Msa1315480:CDS |
| CACAGCATCCATCAAGAACA+AGG | 0.570428 | 8_4:-14956917 | Msa1315480:intron |
| ATTCTTCAAGAACAAGAAAG+AGG | 0.573168 | 8_4:+14957093 | None:intergenic |
| AAGAAGATGAGATAATAAGG+AGG | 0.575986 | 8_4:+14957122 | None:intergenic |
| TAGACAAATTTCAAGACCAA+CGG | 0.578411 | 8_4:-14956447 | Msa1315480:CDS |
| TGAAGGTGGTCGTTTGCAAG+AGG | 0.580771 | 8_4:-14956073 | Msa1315480:CDS |
| AAAGTCAACAGTTGGTCCAG+TGG | 0.602548 | 8_4:-14956950 | Msa1315480:CDS |
| CTTTGCTACCAAGATGAGAG+TGG | 0.619052 | 8_4:-14956509 | Msa1315480:CDS |
| CAAAGCTATGAGTGAGACAA+AGG | 0.622287 | 8_4:+14955997 | None:intergenic |
| CTTCAAGAACAAGAAAGAGG+TGG | 0.639571 | 8_4:+14957096 | None:intergenic |
| ATTGATGATGCAATTGAAGG+TGG | 0.706142 | 8_4:-14956087 | Msa1315480:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATTATCATATTTCTGAATT+GGG | + | chr8_4:14955996-14956015 | None:intergenic | 15.0% |
| !! | AAGAATAGATAAAAGATAAT+AGG | + | chr8_4:14956140-14956159 | None:intergenic | 15.0% |
| !! | ATAGATATATGTATATCAAT+TGG | + | chr8_4:14956183-14956202 | None:intergenic | 15.0% |
| !! | AAAAAAGATGAAAAAAACTT+TGG | - | chr8_4:14956229-14956248 | Msa1315480:intron | 15.0% |
| !!! | AGATAAGTTTTTTCTTTTTT+TGG | - | chr8_4:14956349-14956368 | Msa1315480:intron | 15.0% |
| !!! | AGAATAAAATTGTCATTTTA+TGG | + | chr8_4:14956675-14956694 | None:intergenic | 15.0% |
| !!! | AAAATGACAATTTTATTCTT+CGG | - | chr8_4:14956676-14956695 | Msa1315480:intron | 15.0% |
| !! | TAATTTGAATTGCAATAAAA+TGG | - | chr8_4:14956977-14956996 | Msa1315480:CDS | 15.0% |
| !!! | AATTATCATATTTCTGAATT+GGG | + | chr8_4:14955996-14956015 | None:intergenic | 15.0% |
| !! | AAGAATAGATAAAAGATAAT+AGG | + | chr8_4:14956140-14956159 | None:intergenic | 15.0% |
| !! | ATAGATATATGTATATCAAT+TGG | + | chr8_4:14956183-14956202 | None:intergenic | 15.0% |
| !! | AAAAAAGATGAAAAAAACTT+TGG | - | chr8_4:14956229-14956248 | Msa1315480:intron | 15.0% |
| !!! | AGATAAGTTTTTTCTTTTTT+TGG | - | chr8_4:14956349-14956368 | Msa1315480:intron | 15.0% |
| !!! | AGAATAAAATTGTCATTTTA+TGG | + | chr8_4:14956675-14956694 | None:intergenic | 15.0% |
| !!! | AAAATGACAATTTTATTCTT+CGG | - | chr8_4:14956676-14956695 | Msa1315480:intron | 15.0% |
| !! | TAATTTGAATTGCAATAAAA+TGG | - | chr8_4:14956977-14956996 | Msa1315480:CDS | 15.0% |
| !!! | GAATTATCATATTTCTGAAT+TGG | + | chr8_4:14955997-14956016 | None:intergenic | 20.0% |
| !!! | AAAAAAACTTTGGTTAGTTA+TGG | - | chr8_4:14956239-14956258 | Msa1315480:intron | 20.0% |
| !!! | TACCTTATAGTTTTTTCTAA+GGG | + | chr8_4:14956317-14956336 | None:intergenic | 20.0% |
| !!! | TGGATATATCTACTTTTTAT+TGG | - | chr8_4:14956369-14956388 | Msa1315480:intron | 20.0% |
| !! | AATTGATGTTTATATTCTGA+AGG | - | chr8_4:14956639-14956658 | Msa1315480:intron | 20.0% |
| !! | ATATAAATATGTCTTACCAA+TGG | - | chr8_4:14956834-14956853 | Msa1315480:intron | 20.0% |
| !!! | GAATTATCATATTTCTGAAT+TGG | + | chr8_4:14955997-14956016 | None:intergenic | 20.0% |
| !!! | AAAAAAACTTTGGTTAGTTA+TGG | - | chr8_4:14956239-14956258 | Msa1315480:intron | 20.0% |
| !!! | TACCTTATAGTTTTTTCTAA+GGG | + | chr8_4:14956317-14956336 | None:intergenic | 20.0% |
| !!! | TGGATATATCTACTTTTTAT+TGG | - | chr8_4:14956369-14956388 | Msa1315480:intron | 20.0% |
| !! | AATTGATGTTTATATTCTGA+AGG | - | chr8_4:14956639-14956658 | Msa1315480:intron | 20.0% |
| !! | ATATAAATATGTCTTACCAA+TGG | - | chr8_4:14956834-14956853 | Msa1315480:intron | 20.0% |
| ! | AATAAGGAGGAAAAATGAAA+TGG | + | chr8_4:14955892-14955911 | None:intergenic | 25.0% |
| ! | AAGAAGAAGATGAGATAATA+AGG | + | chr8_4:14955908-14955927 | None:intergenic | 25.0% |
| !! | TTCTTGAAGAATTAGCTTAA+TGG | - | chr8_4:14955942-14955961 | Msa1315480:three_prime_UTR | 25.0% |
| !! | TTTGGTTAGTTATGGAAATT+TGG | - | chr8_4:14956247-14956266 | Msa1315480:intron | 25.0% |
| ! | TTTGTCTCTAGTTATATCTT+TGG | - | chr8_4:14956286-14956305 | Msa1315480:intron | 25.0% |
| !!! | GTACCTTATAGTTTTTTCTA+AGG | + | chr8_4:14956318-14956337 | None:intergenic | 25.0% |
| ! | TTTCTCCTAGTAGTAAAAAT+AGG | - | chr8_4:14956405-14956424 | Msa1315480:intron | 25.0% |
| ! | TGTCTAATTTGATACTAAAC+AGG | - | chr8_4:14956463-14956482 | Msa1315480:CDS | 25.0% |
| !!! | TACTAAACAGGTTTTTTATG+AGG | - | chr8_4:14956475-14956494 | Msa1315480:CDS | 25.0% |
| ! | CTTGAAATTTGTCTATAAGA+TGG | + | chr8_4:14956572-14956591 | None:intergenic | 25.0% |
| !!! | TGAATCTTCTAAAACAAAGT+TGG | - | chr8_4:14956890-14956909 | Msa1315480:intron | 25.0% |
| ! | AATAAGGAGGAAAAATGAAA+TGG | + | chr8_4:14955892-14955911 | None:intergenic | 25.0% |
| ! | AAGAAGAAGATGAGATAATA+AGG | + | chr8_4:14955908-14955927 | None:intergenic | 25.0% |
| !! | TTCTTGAAGAATTAGCTTAA+TGG | - | chr8_4:14955942-14955961 | Msa1315480:three_prime_UTR | 25.0% |
| !! | TTTGGTTAGTTATGGAAATT+TGG | - | chr8_4:14956247-14956266 | Msa1315480:intron | 25.0% |
| ! | TTTGTCTCTAGTTATATCTT+TGG | - | chr8_4:14956286-14956305 | Msa1315480:intron | 25.0% |
| !!! | GTACCTTATAGTTTTTTCTA+AGG | + | chr8_4:14956318-14956337 | None:intergenic | 25.0% |
| ! | TTTCTCCTAGTAGTAAAAAT+AGG | - | chr8_4:14956405-14956424 | Msa1315480:intron | 25.0% |
| ! | TGTCTAATTTGATACTAAAC+AGG | - | chr8_4:14956463-14956482 | Msa1315480:CDS | 25.0% |
| !!! | TACTAAACAGGTTTTTTATG+AGG | - | chr8_4:14956475-14956494 | Msa1315480:CDS | 25.0% |
| ! | CTTGAAATTTGTCTATAAGA+TGG | + | chr8_4:14956572-14956591 | None:intergenic | 25.0% |
| !!! | TGAATCTTCTAAAACAAAGT+TGG | - | chr8_4:14956890-14956909 | Msa1315480:intron | 25.0% |
| AAGAAGATGAGATAATAAGG+AGG | + | chr8_4:14955905-14955924 | None:intergenic | 30.0% | |
| ATTCTTCAAGAACAAGAAAG+AGG | + | chr8_4:14955934-14955953 | None:intergenic | 30.0% | |
| !! | GATTTTAACCTTGTTCTTGA+TGG | + | chr8_4:14956118-14956137 | None:intergenic | 30.0% |
| GTCCCTTAGAAAAAACTATA+AGG | - | chr8_4:14956312-14956331 | Msa1315480:intron | 30.0% | |
| ACTATAAGGTACGTCAAAAT+TGG | - | chr8_4:14956326-14956345 | Msa1315480:intron | 30.0% | |
| ! | AGTGGAGAAATAATTTGTGA+AGG | - | chr8_4:14956533-14956552 | Msa1315480:CDS | 30.0% |
| ! | GTGGAGAAATAATTTGTGAA+GGG | - | chr8_4:14956534-14956553 | Msa1315480:CDS | 30.0% |
| TAGACAAATTTCAAGACCAA+CGG | - | chr8_4:14956577-14956596 | Msa1315480:intron | 30.0% | |
| ! | ATGACAATTTTATTCTTCGG+CGG | - | chr8_4:14956679-14956698 | Msa1315480:intron | 30.0% |
| TGCTACCAGTTAAAATCTTT+CGG | - | chr8_4:14956707-14956726 | Msa1315480:intron | 30.0% | |
| AAATGTCGATGAGGTTAATT+TGG | - | chr8_4:14956735-14956754 | Msa1315480:intron | 30.0% | |
| !! | AGGTTAATTTGGTATTTTCG+TGG | - | chr8_4:14956746-14956765 | Msa1315480:intron | 30.0% |
| ! | TTTCTAGCATTCTTTGATGT+CGG | - | chr8_4:14956772-14956791 | Msa1315480:intron | 30.0% |
| AGCACAACAAAAAATTCCAT+TGG | + | chr8_4:14956853-14956872 | None:intergenic | 30.0% | |
| !!! | TGGAATTTTTTGTTGTGCTT+AGG | - | chr8_4:14956854-14956873 | Msa1315480:intron | 30.0% |
| !!! | GGAATTTTTTGTTGTGCTTA+GGG | - | chr8_4:14956855-14956874 | Msa1315480:intron | 30.0% |
| ! | AGTTGGTTTCAAATTGCAAA+AGG | - | chr8_4:14956907-14956926 | Msa1315480:intron | 30.0% |
| ! | GTTGGTTTCAAATTGCAAAA+GGG | - | chr8_4:14956908-14956927 | Msa1315480:intron | 30.0% |
| !! | GAAATTGATGATGCAATTGA+AGG | - | chr8_4:14956934-14956953 | Msa1315480:CDS | 30.0% |
| TAAAATGAAAAATGTGCTGC+AGG | + | chr8_4:14957131-14957150 | None:intergenic | 30.0% | |
| AAGAAGATGAGATAATAAGG+AGG | + | chr8_4:14955905-14955924 | None:intergenic | 30.0% | |
| ATTCTTCAAGAACAAGAAAG+AGG | + | chr8_4:14955934-14955953 | None:intergenic | 30.0% | |
| !! | GATTTTAACCTTGTTCTTGA+TGG | + | chr8_4:14956118-14956137 | None:intergenic | 30.0% |
| GTCCCTTAGAAAAAACTATA+AGG | - | chr8_4:14956312-14956331 | Msa1315480:intron | 30.0% | |
| ACTATAAGGTACGTCAAAAT+TGG | - | chr8_4:14956326-14956345 | Msa1315480:intron | 30.0% | |
| ! | AGTGGAGAAATAATTTGTGA+AGG | - | chr8_4:14956533-14956552 | Msa1315480:CDS | 30.0% |
| ! | GTGGAGAAATAATTTGTGAA+GGG | - | chr8_4:14956534-14956553 | Msa1315480:CDS | 30.0% |
| TAGACAAATTTCAAGACCAA+CGG | - | chr8_4:14956577-14956596 | Msa1315480:intron | 30.0% | |
| ! | ATGACAATTTTATTCTTCGG+CGG | - | chr8_4:14956679-14956698 | Msa1315480:intron | 30.0% |
| TGCTACCAGTTAAAATCTTT+CGG | - | chr8_4:14956707-14956726 | Msa1315480:intron | 30.0% | |
| AAATGTCGATGAGGTTAATT+TGG | - | chr8_4:14956735-14956754 | Msa1315480:intron | 30.0% | |
| !! | AGGTTAATTTGGTATTTTCG+TGG | - | chr8_4:14956746-14956765 | Msa1315480:intron | 30.0% |
| ! | TTTCTAGCATTCTTTGATGT+CGG | - | chr8_4:14956772-14956791 | Msa1315480:intron | 30.0% |
| AGCACAACAAAAAATTCCAT+TGG | + | chr8_4:14956853-14956872 | None:intergenic | 30.0% | |
| !!! | TGGAATTTTTTGTTGTGCTT+AGG | - | chr8_4:14956854-14956873 | Msa1315480:intron | 30.0% |
| !!! | GGAATTTTTTGTTGTGCTTA+GGG | - | chr8_4:14956855-14956874 | Msa1315480:intron | 30.0% |
| ! | AGTTGGTTTCAAATTGCAAA+AGG | - | chr8_4:14956907-14956926 | Msa1315480:intron | 30.0% |
| ! | GTTGGTTTCAAATTGCAAAA+GGG | - | chr8_4:14956908-14956927 | Msa1315480:intron | 30.0% |
| !! | GAAATTGATGATGCAATTGA+AGG | - | chr8_4:14956934-14956953 | Msa1315480:CDS | 30.0% |
| TAAAATGAAAAATGTGCTGC+AGG | + | chr8_4:14957131-14957150 | None:intergenic | 30.0% | |
| !!! | CCAACTGTTGACTTTTTCTT+TGG | + | chr8_4:14956069-14956088 | None:intergenic | 35.0% |
| CCAAAGAAAAAGTCAACAGT+TGG | - | chr8_4:14956066-14956085 | Msa1315480:CDS | 35.0% | |
| !!! | CCTAGCCTATTTTTACTACT+AGG | + | chr8_4:14956413-14956432 | None:intergenic | 35.0% |
| CCTAGTAGTAAAAATAGGCT+AGG | - | chr8_4:14956410-14956429 | Msa1315480:intron | 35.0% | |
| ! | TTTTATGAGGATGAGTCTCA+AGG | - | chr8_4:14956488-14956507 | Msa1315480:CDS | 35.0% |
| ! | TTATTTCTCCACTCTCATCT+TGG | + | chr8_4:14956526-14956545 | None:intergenic | 35.0% |
| ! | ATTTGTGAAGGGTATGATGA+AGG | - | chr8_4:14956545-14956564 | Msa1315480:intron | 35.0% |
| ! | TTTGTGAAGGGTATGATGAA+GGG | - | chr8_4:14956546-14956565 | Msa1315480:intron | 35.0% |
| TACCAGTTAAAATCTTTCGG+CGG | - | chr8_4:14956710-14956729 | Msa1315480:intron | 35.0% | |
| !! | ATTGATGATGCAATTGAAGG+TGG | - | chr8_4:14956937-14956956 | Msa1315480:CDS | 35.0% |
| TCAAATAGCACATGTGTAGT+AGG | - | chr8_4:14957099-14957118 | Msa1315480:five_prime_UTR | 35.0% | |
| !!! | CCAACTGTTGACTTTTTCTT+TGG | + | chr8_4:14956069-14956088 | None:intergenic | 35.0% |
| CCAAAGAAAAAGTCAACAGT+TGG | - | chr8_4:14956066-14956085 | Msa1315480:CDS | 35.0% | |
| !!! | CCTAGCCTATTTTTACTACT+AGG | + | chr8_4:14956413-14956432 | None:intergenic | 35.0% |
| CCTAGTAGTAAAAATAGGCT+AGG | - | chr8_4:14956410-14956429 | Msa1315480:intron | 35.0% | |
| ! | TTTTATGAGGATGAGTCTCA+AGG | - | chr8_4:14956488-14956507 | Msa1315480:CDS | 35.0% |
| ! | TTATTTCTCCACTCTCATCT+TGG | + | chr8_4:14956526-14956545 | None:intergenic | 35.0% |
| ! | ATTTGTGAAGGGTATGATGA+AGG | - | chr8_4:14956545-14956564 | Msa1315480:intron | 35.0% |
| ! | TTTGTGAAGGGTATGATGAA+GGG | - | chr8_4:14956546-14956565 | Msa1315480:intron | 35.0% |
| TACCAGTTAAAATCTTTCGG+CGG | - | chr8_4:14956710-14956729 | Msa1315480:intron | 35.0% | |
| !! | ATTGATGATGCAATTGAAGG+TGG | - | chr8_4:14956937-14956956 | Msa1315480:CDS | 35.0% |
| TCAAATAGCACATGTGTAGT+AGG | - | chr8_4:14957099-14957118 | Msa1315480:five_prime_UTR | 35.0% | |
| CTTCAAGAACAAGAAAGAGG+TGG | + | chr8_4:14955931-14955950 | None:intergenic | 40.0% | |
| ! | GCTGTGATTTTCAATACCAC+TGG | + | chr8_4:14956093-14956112 | None:intergenic | 40.0% |
| ! | TACCTTTTGTGATGAACCGT+TGG | + | chr8_4:14956596-14956615 | None:intergenic | 40.0% |
| !! | AACCGCCGAAAGATTTTAAC+TGG | + | chr8_4:14956715-14956734 | None:intergenic | 40.0% |
| CAAAGCTATGAGTGAGACAA+AGG | + | chr8_4:14957030-14957049 | None:intergenic | 40.0% | |
| ! | TTGTCTCACTCATAGCTTTG+AGG | - | chr8_4:14957030-14957049 | Msa1315480:CDS | 40.0% |
| CTTCAAGAACAAGAAAGAGG+TGG | + | chr8_4:14955931-14955950 | None:intergenic | 40.0% | |
| ! | GCTGTGATTTTCAATACCAC+TGG | + | chr8_4:14956093-14956112 | None:intergenic | 40.0% |
| ! | TACCTTTTGTGATGAACCGT+TGG | + | chr8_4:14956596-14956615 | None:intergenic | 40.0% |
| !! | AACCGCCGAAAGATTTTAAC+TGG | + | chr8_4:14956715-14956734 | None:intergenic | 40.0% |
| CAAAGCTATGAGTGAGACAA+AGG | + | chr8_4:14957030-14957049 | None:intergenic | 40.0% | |
| ! | TTGTCTCACTCATAGCTTTG+AGG | - | chr8_4:14957030-14957049 | Msa1315480:CDS | 40.0% |
| !! | CTTTGGAGCATAGCATCGTT+TGG | + | chr8_4:14956052-14956071 | None:intergenic | 45.0% |
| AAAGTCAACAGTTGGTCCAG+TGG | - | chr8_4:14956074-14956093 | Msa1315480:CDS | 45.0% | |
| CACAGCATCCATCAAGAACA+AGG | - | chr8_4:14956107-14956126 | Msa1315480:CDS | 45.0% | |
| CTTTGCTACCAAGATGAGAG+TGG | - | chr8_4:14956515-14956534 | Msa1315480:CDS | 45.0% | |
| GACCAACGGTTCATCACAAA+AGG | - | chr8_4:14956591-14956610 | Msa1315480:intron | 45.0% | |
| !! | CTTTGGAGCATAGCATCGTT+TGG | + | chr8_4:14956052-14956071 | None:intergenic | 45.0% |
| AAAGTCAACAGTTGGTCCAG+TGG | - | chr8_4:14956074-14956093 | Msa1315480:CDS | 45.0% | |
| CACAGCATCCATCAAGAACA+AGG | - | chr8_4:14956107-14956126 | Msa1315480:CDS | 45.0% | |
| CTTTGCTACCAAGATGAGAG+TGG | - | chr8_4:14956515-14956534 | Msa1315480:CDS | 45.0% | |
| GACCAACGGTTCATCACAAA+AGG | - | chr8_4:14956591-14956610 | Msa1315480:intron | 45.0% | |
| TCGGCGGTTAAATGTCGATG+AGG | - | chr8_4:14956726-14956745 | Msa1315480:intron | 50.0% | |
| TGAAGGTGGTCGTTTGCAAG+AGG | - | chr8_4:14956951-14956970 | Msa1315480:CDS | 50.0% | |
| TCGGCGGTTAAATGTCGATG+AGG | - | chr8_4:14956726-14956745 | Msa1315480:intron | 50.0% | |
| TGAAGGTGGTCGTTTGCAAG+AGG | - | chr8_4:14956951-14956970 | Msa1315480:CDS | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_4 | gene | 14955888 | 14957158 | 14955888 | ID=Msa1315480;Name=Msa1315480 |
| chr8_4 | mRNA | 14955888 | 14957158 | 14955888 | ID=Msa1315480-mRNA-1;Parent=Msa1315480;Name=Msa1315480-mRNA-1;_AED=0.06;_eAED=0.06;_QI=73|1|1|1|1|1|3|174|134 |
| chr8_4 | exon | 14955888 | 14956170 | 14955888 | ID=Msa1315480-mRNA-1:exon:5684;Parent=Msa1315480-mRNA-1 |
| chr8_4 | exon | 14956434 | 14956561 | 14956434 | ID=Msa1315480-mRNA-1:exon:5683;Parent=Msa1315480-mRNA-1 |
| chr8_4 | exon | 14956918 | 14957158 | 14956918 | ID=Msa1315480-mRNA-1:exon:5682;Parent=Msa1315480-mRNA-1 |
| chr8_4 | five_prime_UTR | 14957086 | 14957158 | 14957086 | ID=Msa1315480-mRNA-1:five_prime_utr;Parent=Msa1315480-mRNA-1 |
| chr8_4 | CDS | 14956918 | 14957085 | 14956918 | ID=Msa1315480-mRNA-1:cds;Parent=Msa1315480-mRNA-1 |
| chr8_4 | CDS | 14956434 | 14956561 | 14956434 | ID=Msa1315480-mRNA-1:cds;Parent=Msa1315480-mRNA-1 |
| chr8_4 | CDS | 14956062 | 14956170 | 14956062 | ID=Msa1315480-mRNA-1:cds;Parent=Msa1315480-mRNA-1 |
| chr8_4 | three_prime_UTR | 14955888 | 14956061 | 14955888 | ID=Msa1315480-mRNA-1:three_prime_utr;Parent=Msa1315480-mRNA-1 |
| Gene Sequence |
| Protein sequence |
