AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0836180

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0836180 MtrunA17_Chr6g0456861 78.899 109 20 1 1 109 671 776 1.57e-54 181
Msa0836180 MtrunA17_Chr3g0138411 74.312 109 26 1 1 109 1100 1206 7.19e-52 174
Msa0836180 MtrunA17_Chr3g0133461 75.229 109 25 1 1 109 1237 1343 6.04e-51 172
Msa0836180 MtrunA17_Chr5g0438991 84.946 93 12 1 1 93 868 958 1.78e-49 167
Msa0836180 MtrunA17_Chr4g0000031 47.475 99 47 1 3 101 1602 1695 2.56e-25 99.0
Msa0836180 MtrunA17_Chr5g0401281 37.500 72 44 1 22 92 279 350 1.71e-12 62.0
Msa0836180 MtrunA17_Chr5g0401991 96.429 28 1 0 1 28 194 221 7.81e-12 59.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0836180 AT1G16710.1 47.475 99 47 1 3 101 1599 1692 1.96e-26 102
Msa0836180 AT1G16710.3 47.475 99 47 1 3 101 1573 1666 1.99e-26 102
Msa0836180 AT1G16710.10 47.475 99 47 1 3 101 1573 1666 1.99e-26 102
Msa0836180 AT1G16710.8 47.475 99 47 1 3 101 1573 1666 1.99e-26 102
Msa0836180 AT1G16710.7 47.475 99 47 1 3 101 1573 1666 1.99e-26 102
Msa0836180 AT1G16710.2 47.475 99 47 1 3 101 1570 1663 2.01e-26 102
Msa0836180 AT1G16710.6 47.475 99 47 1 3 101 1534 1627 2.03e-26 102
Msa0836180 AT1G16710.4 47.475 99 47 1 3 101 1534 1627 2.03e-26 102
Msa0836180 AT1G16710.5 47.475 99 47 1 3 101 1534 1627 2.03e-26 102
Msa0836180 AT1G79000.1 47.475 99 47 1 3 101 1590 1683 5.32e-26 101
Msa0836180 AT1G79000.2 47.475 99 47 1 3 101 1590 1683 5.43e-26 101
Msa0836180 AT1G79000.3 47.475 99 47 1 3 101 1566 1659 5.47e-26 101
Msa0836180 AT3G12980.1 42.308 78 42 1 24 101 1581 1655 6.15e-16 72.4
Msa0836180 AT3G12980.2 42.308 78 42 1 24 101 1500 1574 6.64e-16 72.4
Msa0836180 AT5G67480.2 38.667 75 45 1 20 93 282 356 6.59e-12 60.8
Msa0836180 AT5G67480.1 38.667 75 45 1 20 93 271 345 7.04e-12 60.8
Msa0836180 AT5G67480.3 38.667 75 45 1 20 93 271 345 7.04e-12 60.8
Msa0836180 AT1G67220.1 35.366 82 50 2 1 81 1281 1360 1.69e-11 59.7

Find 235 sgRNAs with CRISPR-Local

Find 358 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCACACTTTGTCCTTCTTTC+AGG 0.073241 5_4:-9657702 None:intergenic
TTCTTTCTTCCTACTGAAAA+AGG 0.113508 5_4:+9658171 Msa0836180:five_prime_UTR
TTTCCCTCTTTATTAGTTTA+TGG 0.135527 5_4:+9655277 Msa0836180:five_prime_UTR
CCCTGGTAGGCAATATATTT+TGG 0.147750 5_4:-9658554 None:intergenic
GTCTCCAATTTCAACATATT+TGG 0.169388 5_4:-9653669 None:intergenic
GTCTCCAATTTCAACATATT+TGG 0.169388 5_4:+9655051 Msa0836180:five_prime_UTR
AGAGTAGATTGTTTGGAAAT+AGG 0.201852 5_4:+9658972 Msa0836180:five_prime_UTR
GAAAGTGAATAAGCAGTTTC+TGG 0.202627 5_4:+9657354 Msa0836180:five_prime_UTR
TAATATAAGAATTATAATTT+TGG 0.206931 5_4:-9653963 None:intergenic
GCATTTGAGTCGCTTCTTAC+TGG 0.234178 5_4:-9654838 None:intergenic
GAGTAGATTGTTTGGAAATA+GGG 0.235125 5_4:+9658973 Msa0836180:five_prime_UTR
CTTACTAAGGGTTGTTATAT+TGG 0.244244 5_4:+9655397 Msa0836180:five_prime_UTR
TGCTTCTGTTGATTAGCTTT+TGG 0.246779 5_4:-9655986 None:intergenic
AAGAGAAATCAACTTCAATT+TGG 0.249229 5_4:+9654720 Msa0836180:five_prime_UTR
CACTGAATGCAAGAAATTTC+AGG 0.254650 5_4:+9658656 Msa0836180:five_prime_UTR
GCCACCAAATATGTTGAAAT+TGG 0.255477 5_4:+9653665 Msa0836180:five_prime_UTR
GCCACCAAATATGTTGAAAT+TGG 0.255477 5_4:-9655055 None:intergenic
GGCAGTGAAGAAGCAGTTTC+TGG 0.255829 5_4:+9656612 Msa0836180:five_prime_UTR
TTCCGAGTCTTTGCAATTCC+TGG 0.259668 5_4:-9659464 None:intergenic
TGGTCAAGTGAAATTCAAAT+AGG 0.267208 5_4:+9653476 Msa0836180:five_prime_UTR
AAATTGTGTACAACCGTAAT+TGG 0.278809 5_4:+9655545 Msa0836180:five_prime_UTR
TTACCAAAGGCGGCTAATTC+TGG 0.284652 5_4:+9656953 Msa0836180:five_prime_UTR
TCAAGAATTGAAGACTTTGA+TGG 0.290325 5_4:+9653927 Msa0836180:five_prime_UTR
TCAAGAATTGAAGACTTTGA+TGG 0.290325 5_4:+9654125 Msa0836180:five_prime_UTR
TCAAGAATTGAAGACTTTGA+TGG 0.290325 5_4:-9654785 None:intergenic
GCATTTGAGACGCTTCTTAC+TGG 0.308967 5_4:+9653874 Msa0836180:five_prime_UTR
GCATTTGAGACGCTTCTTAC+TGG 0.308967 5_4:+9654072 Msa0836180:five_prime_UTR
TGGTCACTTAGCACTGTTCT+TGG 0.319724 5_4:-9656989 None:intergenic
CTTCGTTTACCATGAGATAT+TGG 0.325834 5_4:+9657740 Msa0836180:five_prime_UTR
TCCTCTACATCAATAGGAAT+TGG 0.326549 5_4:-9655904 None:intergenic
TTGCATCACCAGAGTCTCTT+TGG 0.327824 5_4:-9658364 None:intergenic
TTGCCGTAGAGCTGAAGTTT+TGG 0.336259 5_4:+9659722 Msa0836180:CDS
TGTTTGTCCTCTACATCAAT+AGG 0.344000 5_4:-9655910 None:intergenic
TAATCATCCCCTTTCTTTGA+AGG 0.345904 5_4:-9657931 None:intergenic
CATTGTTGCGTAGCGGAATT+CGG 0.354248 5_4:+9653345 Msa0836180:five_prime_UTR
TATAGATGATTGTTAAAATT+CGG 0.359350 5_4:+9653370 Msa0836180:five_prime_UTR
GGTCAAGTGAAATTCAAATA+GGG 0.359363 5_4:+9653477 Msa0836180:five_prime_UTR
CTTCTGTTTAAGCTGATTGA+AGG 0.363488 5_4:+9657566 Msa0836180:five_prime_UTR
TTCTTGAAGTAAAGTTCTAA+TGG 0.364202 5_4:-9653911 None:intergenic
TTCTTGAAGTAAAGTTCTAA+TGG 0.364202 5_4:-9654109 None:intergenic
TTCTTGAAGTAAAGTTCTAA+TGG 0.364202 5_4:+9654801 Msa0836180:five_prime_UTR
AAGAGAAATCAACTTCAGTT+TGG 0.364237 5_4:-9654190 None:intergenic
AGTGTCAAATAGAACATTAA+AGG 0.370702 5_4:+9658320 Msa0836180:five_prime_UTR
TTTCAGACTTCAAATATGTT+TGG 0.375360 5_4:-9656077 None:intergenic
GAATTGGAAGCTGGCTTATG+AGG 0.376100 5_4:-9655888 None:intergenic
CTTGAGAATCTGTCCCCTCC+TGG 0.377841 5_4:-9655951 None:intergenic
ACTTTCTGATTGTGCTTCCT+TGG 0.380253 5_4:+9654580 Msa0836180:five_prime_UTR
ATCAAATTAATAAACAATTC+AGG 0.381091 5_4:-9653553 None:intergenic
GTTTCTCAACTTGCTACATA+TGG 0.388170 5_4:+9657899 Msa0836180:five_prime_UTR
GTCCTTGAGAGTAGATTGTT+TGG 0.389989 5_4:+9658965 Msa0836180:five_prime_UTR
GCACCAGAATTAGCCGCCTT+TGG 0.391601 5_4:-9656956 None:intergenic
AAAACTCACCAATAGTTTCC+TGG 0.392558 5_4:-9653694 None:intergenic
CAGCAGTCTCCTTCAAAGTA+TGG 0.394018 5_4:-9658222 None:intergenic
AAGTGTGTTGATCATAACTA+TGG 0.394998 5_4:-9658783 None:intergenic
TCTTCAAAACATCTCTTTCG+TGG 0.398197 5_4:-9655475 None:intergenic
ATATATTCACAAAGATTCAT+TGG 0.399198 5_4:-9659767 None:intergenic
AGTATGTCAATCTGAGAATC+AGG 0.404577 5_4:+9659147 Msa0836180:five_prime_UTR
GTTATATTGGTGCGAATACT+TGG 0.405425 5_4:+9655410 Msa0836180:five_prime_UTR
GAATTGAATAGTTGGACCTT+AGG 0.410293 5_4:-9660019 None:intergenic
ATGCATCTCAATGCCGCCGC+CGG 0.412185 5_4:+9659302 Msa0836180:CDS
TTAATTCAAATAGTGAATCA+TGG 0.417083 5_4:+9655140 Msa0836180:five_prime_UTR
TCGCATTAGGATTGTGTAGA+TGG 0.417229 5_4:-9659081 None:intergenic
ATAACTGATGAAGAATGTTT+TGG 0.417678 5_4:-9655442 None:intergenic
ATGCATACACAAGCGCTGAT+TGG 0.422768 5_4:-9657648 None:intergenic
CAGCATTACTTGCCCGGCGG+CGG 0.424812 5_4:-9659315 None:intergenic
CAGAGTCTCTTTGGAAGGCT+TGG 0.425209 5_4:-9658355 None:intergenic
TTTCGTTTGCCATACTTTGA+AGG 0.426623 5_4:+9658213 Msa0836180:five_prime_UTR
TTTCAGTAGGAAGAAAGAAA+TGG 0.429433 5_4:-9658167 None:intergenic
CCCTTTCTTTGAAGGAGCAC+AGG 0.430843 5_4:-9657923 None:intergenic
TATGTTTGGTTATTTGATCA+TGG 0.433346 5_4:-9656063 None:intergenic
TCAGCAGGGTAATTCTCCTC+TGG 0.435068 5_4:-9657385 None:intergenic
TGCATCTCAATGCCGCCGCC+GGG 0.437980 5_4:+9659303 Msa0836180:CDS
TGAGACTTGAATTGAATAGT+TGG 0.440051 5_4:-9660027 None:intergenic
CAATGACAACATTATCAAAC+AGG 0.440162 5_4:-9654620 None:intergenic
CGGCGTAGCTTATCATTCTT+CGG 0.441625 5_4:-9657988 None:intergenic
TGCATTCAGAGTCAAATTCC+TGG 0.443063 5_4:-9657619 None:intergenic
TCATGCAAGAGAGATAAAAC+TGG 0.443082 5_4:+9657038 Msa0836180:five_prime_UTR
CAATGTCAACATAGTCAAAC+AGG 0.443613 5_4:+9654290 Msa0836180:five_prime_UTR
ATCATTATGTTTAGTGTTGG+AGG 0.449050 5_4:-9658939 None:intergenic
AATCTATAAAAGAATTCAGC+AGG 0.450271 5_4:-9656658 None:intergenic
TGCATACACAAGCGCTGATT+GGG 0.451340 5_4:-9657647 None:intergenic
TAATCTTCTTATTACTCTCA+TGG 0.454962 5_4:+9654930 Msa0836180:five_prime_UTR
TTCTTGATTTGAGAACAGTT+TGG 0.456469 5_4:-9659352 None:intergenic
TTCAGGCCTAAAATACTTGA+CGG 0.457367 5_4:-9657685 None:intergenic
ATCAAATTTACATACACAAA+AGG 0.458620 5_4:-9659897 None:intergenic
AATTTGAATTGCTAGGAAGT+TGG 0.460468 5_4:+9653590 Msa0836180:five_prime_UTR
AGAATTAGCCGCCTTTGGTA+AGG 0.464266 5_4:-9656951 None:intergenic
TCAGCAGGGTAATTCTCATC+TGG 0.465105 5_4:-9656643 None:intergenic
TGCCGTGAAGTGATAGTGTC+TGG 0.465307 5_4:+9658618 Msa0836180:five_prime_UTR
CAAACTGAAACTGAGACTTC+TGG 0.468204 5_4:-9659015 None:intergenic
AATATCATTATGTTTAGTGT+TGG 0.474871 5_4:-9658942 None:intergenic
ATTTCAACATATTTGGTGGC+AGG 0.477391 5_4:-9653662 None:intergenic
ATTTCAACATATTTGGTGGC+AGG 0.477391 5_4:+9655058 Msa0836180:five_prime_UTR
ACCTGTGCTCCTTCAAAGAA+AGG 0.478002 5_4:+9657922 Msa0836180:five_prime_UTR
ATTTGATTATGTATATACAT+AGG 0.478607 5_4:+9659913 Msa0836180:three_prime_UTR
TAAATGATTGTTTGTAGCAA+TGG 0.479509 5_4:+9654011 Msa0836180:five_prime_UTR
TAAATGATTGTTTGTAGCAA+TGG 0.479509 5_4:-9654899 None:intergenic
AGGCAGAGTAGTATTTAGTC+AGG 0.479801 5_4:+9655753 Msa0836180:five_prime_UTR
GATCTATAAGAGAATTCAGC+AGG 0.480043 5_4:-9657400 None:intergenic
TCATCAAAGTTAATAAAACT+TGG 0.482881 5_4:-9659817 None:intergenic
GGAGACTCCCAGGAAACTAT+TGG 0.483016 5_4:+9653686 Msa0836180:five_prime_UTR
AAGCGAGAAGATGCTTACTA+AGG 0.483446 5_4:+9655384 Msa0836180:five_prime_UTR
GCCAAAATATATTGCCTACC+AGG 0.484399 5_4:+9658553 Msa0836180:five_prime_UTR
GATGACAGACAACAATTCAA+TGG 0.488131 5_4:+9655831 Msa0836180:five_prime_UTR
ATGGCTCAGCATTACTTGCC+CGG 0.490163 5_4:-9659321 None:intergenic
TCCAATTTCAACATATTTGG+TGG 0.490994 5_4:-9653666 None:intergenic
TCCAATTTCAACATATTTGG+TGG 0.490994 5_4:+9655054 Msa0836180:five_prime_UTR
GTTAATTAATTTGAATTGCT+AGG 0.492777 5_4:+9653583 Msa0836180:five_prime_UTR
CCTGTGCTCCTTCAAAGAAA+GGG 0.494532 5_4:+9657923 Msa0836180:five_prime_UTR
AAAGAAATGGTCATGTATGT+TGG 0.496652 5_4:-9658154 None:intergenic
GGGAAAGATCTTGAAATACA+TGG 0.496918 5_4:+9655808 Msa0836180:five_prime_UTR
TCCCAGACACTATCACTTCA+CGG 0.498199 5_4:-9658620 None:intergenic
ACCGAAGAAAATATTGTCGT+TGG 0.500600 5_4:+9658126 Msa0836180:five_prime_UTR
AAAATTCGGCCACGATTAAG+TGG 0.502075 5_4:+9653384 Msa0836180:five_prime_UTR
AGTGGGATGAATGCAATAGA+TGG 0.504930 5_4:+9656819 Msa0836180:intron
CATTATGTTTAGTGTTGGAG+GGG 0.505283 5_4:-9658937 None:intergenic
GATCAACACACTTCAAAGAA+TGG 0.512393 5_4:+9658793 Msa0836180:five_prime_UTR
GTGCAAAATTCGATTAAATG+AGG 0.513828 5_4:+9659396 Msa0836180:CDS
CTCCAGGAATTGCAAAGACT+CGG 0.514621 5_4:+9659462 Msa0836180:CDS
TGAGGTGCATACGCTTTGTC+AGG 0.517756 5_4:+9658816 Msa0836180:five_prime_UTR
TCATTATGTTTAGTGTTGGA+GGG 0.517970 5_4:-9658938 None:intergenic
CATCAATAGGAATTGGAAGC+TGG 0.521522 5_4:-9655897 None:intergenic
AATCATCATAGAGGAATACT+TGG 0.522130 5_4:-9659053 None:intergenic
TGTTGTGAATATATATTCAA+TGG 0.522519 5_4:+9659989 Msa0836180:three_prime_UTR
GGCGGCTAATTCTGGTGCTA+AGG 0.522544 5_4:+9656961 Msa0836180:five_prime_UTR
ATCACCAGAGTCTCTTTGGA+AGG 0.522915 5_4:-9658360 None:intergenic
CGAAAAGTCTTATCTCTAAG+TGG 0.523031 5_4:-9657009 None:intergenic
TCCAATTCCTATTGATGTAG+AGG 0.524039 5_4:+9655903 Msa0836180:five_prime_UTR
GAATTAGCCGCCTTTGGTAA+GGG 0.525892 5_4:-9656950 None:intergenic
CAGCAGGGTAATTCTCCTCT+GGG 0.526093 5_4:-9657384 None:intergenic
GCACTGATTTCTGTTCTACA+TGG 0.527594 5_4:-9659689 None:intergenic
CAAGCCTTCCAAAGAGACTC+TGG 0.527624 5_4:+9658356 Msa0836180:five_prime_UTR
AAACTCACCAATAGTTTCCT+GGG 0.528149 5_4:-9653693 None:intergenic
AGAAATTTCAGGAGTGTGAA+AGG 0.528641 5_4:+9658667 Msa0836180:five_prime_UTR
ATGTTTGGTTATTTGATCAT+GGG 0.532573 5_4:-9656062 None:intergenic
TGCAAAATTCGATTAAATGA+GGG 0.532824 5_4:+9659397 Msa0836180:CDS
CTGCTGGTGTGGTAATGCTA+TGG 0.533073 5_4:+9658239 Msa0836180:five_prime_UTR
GAAGAATTAAGCTATCAAGT+AGG 0.533542 5_4:+9655493 Msa0836180:five_prime_UTR
TTTCCAAAACTTCAGCTCTA+CGG 0.533760 5_4:-9659725 None:intergenic
GTTATCTGTTGACAACCAAC+TGG 0.534094 5_4:+9656591 Msa0836180:five_prime_UTR
ATTCAATGGTTGAGAACCTA+AGG 0.534499 5_4:+9660003 Msa0836180:three_prime_UTR
AGACATTAACAAACAAATTG+AGG 0.534571 5_4:+9653837 Msa0836180:five_prime_UTR
TATATTGACATTTGAAGAAG+AGG 0.537375 5_4:-9653633 None:intergenic
AGACATTAACAAACAGATTG+AGG 0.538285 5_4:-9654875 None:intergenic
CATGGACTGAATCAGCATCA+AGG 0.538652 5_4:-9654694 None:intergenic
ACACTTCTCAACAAGTACTT+AGG 0.539088 5_4:+9654313 Msa0836180:five_prime_UTR
TCAACTTCAATTTGGACTCG+TGG 0.539110 5_4:+9654728 Msa0836180:five_prime_UTR
AATGTAGAATACCACGCTGC+AGG 0.540083 5_4:+9659485 Msa0836180:CDS
TTATACTAACTTCTCACTCC+AGG 0.540435 5_4:+9659446 Msa0836180:CDS
TGTTGAAATTGGAGACTCCC+AGG 0.540952 5_4:+9653676 Msa0836180:five_prime_UTR
TCAACTTCAGTTTGGACTCG+TGG 0.541203 5_4:-9654182 None:intergenic
ACAAATTCCTTCACATCAGA+AGG 0.542860 5_4:-9654246 None:intergenic
AGGCATTAACAAACAGATTG+AGG 0.543915 5_4:+9654035 Msa0836180:five_prime_UTR
AATTGGAAGCTGGCTTATGA+GGG 0.545245 5_4:-9655887 None:intergenic
TATTTGTTGATTGTTTCTTG+TGG 0.547979 5_4:+9655335 Msa0836180:five_prime_UTR
AGAGTAGTATTTAGTCAGGA+GGG 0.549852 5_4:+9655757 Msa0836180:five_prime_UTR
ACAAACTCCTTCACATCAGA+AGG 0.559927 5_4:+9654664 Msa0836180:five_prime_UTR
GCGACTCAAATGCAAGAAGC+GGG 0.562949 5_4:+9654848 Msa0836180:five_prime_UTR
GAAAGCGATGGAGCAATCGT+TGG 0.563087 5_4:+9659744 Msa0836180:CDS
ATGGGTGGACAGATCAATCA+AGG 0.563419 5_4:-9656044 None:intergenic
GCGTCTCAAATGCAAGAAGC+GGG 0.563643 5_4:-9653864 None:intergenic
CTTTATATTGACGTTTGAAG+AGG 0.566889 5_4:+9655084 Msa0836180:five_prime_UTR
AGCGAGAAGATGCTTACTAA+GGG 0.568051 5_4:+9655385 Msa0836180:five_prime_UTR
GTGCCATAAACTAATAAAGA+GGG 0.568399 5_4:-9655280 None:intergenic
TTTATATTGACGTTTGAAGA+GGG 0.569764 5_4:+9655085 Msa0836180:five_prime_UTR
ACTCTTACCTTCTGATGTGA+AGG 0.572398 5_4:+9654239 Msa0836180:five_prime_UTR
TTCCAAACAATCTACTCTCA+AGG 0.576903 5_4:-9658967 None:intergenic
CTCAAAAGATATCAGAGGAG+GGG 0.578093 5_4:+9655788 Msa0836180:five_prime_UTR
TTTGGTTATTTGATCATGGG+TGG 0.578504 5_4:-9656059 None:intergenic
AGCGTCTCAAATGCAAGAAG+CGG 0.579572 5_4:-9654063 None:intergenic
CATGCAAGAGAGATAAAACT+GGG 0.581328 5_4:+9657039 Msa0836180:five_prime_UTR
TGATTGTTTGTAGCAATGGA+AGG 0.581352 5_4:+9654015 Msa0836180:five_prime_UTR
AAATAGAACATTAAAGGACA+TGG 0.581441 5_4:+9658326 Msa0836180:five_prime_UTR
CAAACGAAAAGCTGTCACCT+TGG 0.585482 5_4:-9658199 None:intergenic
ACTCATACCTTCTGATGTGA+AGG 0.585878 5_4:-9654671 None:intergenic
ACTGCTTCTTCACTGCCAGT+TGG 0.587332 5_4:-9656606 None:intergenic
GAACAGTTTGGATGAGAGCA+TGG 0.587828 5_4:-9659340 None:intergenic
GAATTTAATTCAACCAGGAG+GGG 0.589658 5_4:+9655938 Msa0836180:five_prime_UTR
TGATAGTGTCTGGGAAGCGA+TGG 0.590031 5_4:+9658628 Msa0836180:five_prime_UTR
AGCGTCTCAAATGCAAGAAG+CGG 0.590962 5_4:-9653865 None:intergenic
AGCGACTCAAATGCAAGAAG+CGG 0.590962 5_4:+9654847 Msa0836180:five_prime_UTR
GTCAAGTGAAATTCAAATAG+GGG 0.592157 5_4:+9653478 Msa0836180:five_prime_UTR
CCAAAATATATTGCCTACCA+GGG 0.595401 5_4:+9658554 Msa0836180:five_prime_UTR
GGAAAGATCTTGAAATACAT+GGG 0.595735 5_4:+9655809 Msa0836180:five_prime_UTR
AGAATGATAAGCTACGCCGC+TGG 0.596059 5_4:+9657992 Msa0836180:five_prime_UTR
CATACTTTGAAGGAGACTGC+TGG 0.599995 5_4:+9658223 Msa0836180:five_prime_UTR
AAGTAGGATTCTCCACAGAC+TGG 0.600517 5_4:+9655509 Msa0836180:five_prime_UTR
CAGAGTAGTATTTAGTCAGG+AGG 0.600694 5_4:+9655756 Msa0836180:five_prime_UTR
TGTGCCATAAACTAATAAAG+AGG 0.602709 5_4:-9655281 None:intergenic
ATATTGACATTTGAAGAAGA+GGG 0.603801 5_4:-9653632 None:intergenic
GATGTTGAACAGGACATACA+AGG 0.607215 5_4:+9655733 Msa0836180:intron
TGCTCAAAAGATATCAGAGG+AGG 0.607660 5_4:+9655786 Msa0836180:five_prime_UTR
GGAATTTAATTCAACCAGGA+GGG 0.607699 5_4:+9655937 Msa0836180:five_prime_UTR
CTGTGCTCCTTCAAAGAAAG+GGG 0.607767 5_4:+9657924 Msa0836180:five_prime_UTR
AGAATGATACCGCCAGTCTG+TGG 0.610785 5_4:-9655521 None:intergenic
AATATTGCAAGTGAGCTATG+AGG 0.614269 5_4:-9658584 None:intergenic
GCTCAAAAGATATCAGAGGA+GGG 0.621747 5_4:+9655787 Msa0836180:five_prime_UTR
CATGGTAAACGAAGGTACGA+AGG 0.628852 5_4:-9657731 None:intergenic
AATAGAACATTAAAGGACAT+GGG 0.630593 5_4:+9658327 Msa0836180:five_prime_UTR
GCATGTTCCCTTACCAAAGG+CGG 0.630753 5_4:+9656943 Msa0836180:five_prime_UTR
ATGGTAAACGAAGGTACGAA+GGG 0.635264 5_4:-9657730 None:intergenic
AATTCAATGGAAATTGACAT+CGG 0.636320 5_4:+9655844 Msa0836180:five_prime_UTR
TTTGAAGGAGACTGCTGGTG+TGG 0.637044 5_4:+9658228 Msa0836180:five_prime_UTR
CCTGAAAGAAGGACAAAGTG+TGG 0.639771 5_4:+9657702 Msa0836180:five_prime_UTR
TTTCTGATTGCTGTTCACAT+TGG 0.640228 5_4:+9655200 Msa0836180:five_prime_UTR
GCCGTGAAGTGATAGTGTCT+GGG 0.641094 5_4:+9658619 Msa0836180:five_prime_UTR
ACTCGTGGTTAGATACAAGA+TGG 0.648760 5_4:-9654167 None:intergenic
ACTCGTGGTTAGATACAAGA+TGG 0.648760 5_4:+9654743 Msa0836180:five_prime_UTR
AGACGGAATTTAATTCAACC+AGG 0.650506 5_4:+9655933 Msa0836180:five_prime_UTR
GAGTAGTATTTAGTCAGGAG+GGG 0.652349 5_4:+9655758 Msa0836180:five_prime_UTR
AATGCATGTTCCCTTACCAA+AGG 0.654704 5_4:+9656940 Msa0836180:five_prime_UTR
ATCTATAAAAGAATTCAGCA+GGG 0.660921 5_4:-9656657 None:intergenic
GATGTAGAGGACAAACAAGA+CGG 0.661675 5_4:+9655916 Msa0836180:five_prime_UTR
CGGAATTTAATTCAACCAGG+AGG 0.663652 5_4:+9655936 Msa0836180:five_prime_UTR
AGGTGGCGTACTAACCTGAA+CGG 0.664832 5_4:-9656107 None:intergenic
CAATATCTCATGGTAAACGA+AGG 0.666016 5_4:-9657739 None:intergenic
AGGGAATGAGAATCTTGATG+AGG 0.666581 5_4:+9657072 Msa0836180:five_prime_UTR
TAGGATTCTCCACAGACTGG+CGG 0.666878 5_4:+9655512 Msa0836180:five_prime_UTR
TAGAGGAATACTTGGCACGA+CGG 0.668087 5_4:-9659045 None:intergenic
GGTTAGATACAAGATGGTCA+AGG 0.669020 5_4:-9654161 None:intergenic
GGTTAGATACAAGATGGTCA+AGG 0.669020 5_4:+9654749 Msa0836180:five_prime_UTR
ATCTATAAGAGAATTCAGCA+GGG 0.680316 5_4:-9657399 None:intergenic
CATTAACAAACAAATTGAGG+AGG 0.682556 5_4:+9653840 Msa0836180:five_prime_UTR
AGTTGCTCAAAAGATATCAG+AGG 0.685664 5_4:+9655783 Msa0836180:five_prime_UTR
GGAGGGGATATCATCAACAA+CGG 0.699125 5_4:-9658921 None:intergenic
CATTAACAAACAGATTGAGG+AGG 0.701927 5_4:-9654872 None:intergenic
ACACACTTCAAAGAATGGTG+AGG 0.703040 5_4:+9658798 Msa0836180:five_prime_UTR
ACACTTCTCAACAAGTACCA+AGG 0.704084 5_4:-9654597 None:intergenic
GCTATAACATTGTTGCGTAG+CGG 0.708661 5_4:+9653338 Msa0836180:five_prime_UTR
GCTCAGCATTACTTGCCCGG+CGG 0.716635 5_4:-9659318 None:intergenic
AGCGCTATACCACTTAATCG+TGG 0.730941 5_4:-9653393 None:intergenic
ATGGTAGAGAATCATCATAG+AGG 0.733865 5_4:-9659062 None:intergenic
ATTGTAACACACCTGCAGCG+TGG 0.738381 5_4:-9659496 None:intergenic
GTTTCTGGACATCATCCCAG+AGG 0.751856 5_4:+9657369 Msa0836180:five_prime_UTR
CATGGACTGAATCAACATCG+AGG 0.754681 5_4:+9654216 Msa0836180:five_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAAAAGATCAATAATTTTAA+GGG - chr5_4:9657206-9657225 None:intergenic 10.0%
!! AAACAAACAATATAAAAATA+AGG - chr5_4:9658075-9658094 None:intergenic 10.0%
!! TATAGATGATTGTTAAAATT+CGG + chr5_4:9653370-9653389 Msa0836180:five_prime_UTR 15.0%
!! ATCAAATTAATAAACAATTC+AGG - chr5_4:9653556-9653575 None:intergenic 15.0%
!!! TTTTTCTTCTCTAAATTTTA+AGG + chr5_4:9653718-9653737 Msa0836180:intron 15.0%
!! GATTATAAATGATTTATTGT+AGG + chr5_4:9653808-9653827 Msa0836180:intron 15.0%
!!! AACATCATTTATTTTATTTG+AGG - chr5_4:9656020-9656039 None:intergenic 15.0%
!!! TTCTTTTTAAATAACATACT+AGG - chr5_4:9656485-9656504 None:intergenic 15.0%
!!! GAAAAAGATCAATAATTTTA+AGG - chr5_4:9657207-9657226 None:intergenic 15.0%
!!! GTTCATTTTATTAGTTTTAT+TGG - chr5_4:9657794-9657813 None:intergenic 15.0%
!! ATTTGATTATGTATATACAT+AGG + chr5_4:9659913-9659932 Msa0836180:three_prime_UTR 15.0%
!!! TTTTAAGAGAATGAATAATA+AGG - chr5_4:9659949-9659968 None:intergenic 15.0%
!!! GTTAATTAATTTGAATTGCT+AGG + chr5_4:9653583-9653602 Msa0836180:five_prime_UTR 20.0%
!! TAAATGATTTATTGTAGGAA+TGG + chr5_4:9653813-9653832 Msa0836180:intron 20.0%
!!! TTTTTCTTCTCTGAATTTTA+AGG - chr5_4:9655005-9655024 None:intergenic 20.0%
!! TTAATTCAAATAGTGAATCA+TGG + chr5_4:9655140-9655159 Msa0836180:five_prime_UTR 20.0%
!!! TTTTTCTTCTTATCCAATTA+CGG - chr5_4:9655561-9655580 None:intergenic 20.0%
!!! ATTTATTTTATTTGAGGATG+TGG - chr5_4:9656014-9656033 None:intergenic 20.0%
!! ATCAATGTATTTAAAAACAC+AGG - chr5_4:9656134-9656153 None:intergenic 20.0%
!! TTAAATACATTGATCTGTTT+AGG + chr5_4:9656140-9656159 Msa0836180:intron 20.0%
!! TTTAAATAACATACTAGGAA+GGG - chr5_4:9656480-9656499 None:intergenic 20.0%
!!! TTTTAAATAACATACTAGGA+AGG - chr5_4:9656481-9656500 None:intergenic 20.0%
!!! TTCCATTTTCAATTTCTTTT+TGG - chr5_4:9656922-9656941 None:intergenic 20.0%
!! TTTATATTGTTTGTTTATGC+AGG + chr5_4:9658079-9658098 Msa0836180:intron 20.0%
!! TTCATTTACTCAAGTATAAA+AGG - chr5_4:9658425-9658444 None:intergenic 20.0%
!!! AACTTAAACTAGTCTATAAT+AGG - chr5_4:9658461-9658480 None:intergenic 20.0%
!!! TAGCATTGAATGAAATAAAA+AGG + chr5_4:9658722-9658741 Msa0836180:intron 20.0%
!!! AGCATTGAATGAAATAAAAA+GGG + chr5_4:9658723-9658742 Msa0836180:intron 20.0%
!! AATATCATTATGTTTAGTGT+TGG - chr5_4:9658945-9658964 None:intergenic 20.0%
!!! AAAACAGAGTCATTTTTTTT+TGG + chr5_4:9659608-9659627 Msa0836180:intron 20.0%
!! ATATATTCACAAAGATTCAT+TGG - chr5_4:9659770-9659789 None:intergenic 20.0%
!! TCATCAAAGTTAATAAAACT+TGG - chr5_4:9659820-9659839 None:intergenic 20.0%
!! ATCAAATTTACATACACAAA+AGG - chr5_4:9659900-9659919 None:intergenic 20.0%
!! TGTTGTGAATATATATTCAA+TGG + chr5_4:9659989-9660008 Msa0836180:three_prime_UTR 20.0%
!!! ATGTTACGATTTAACTTTTC+TGG + chr5_4:9653456-9653475 Msa0836180:five_prime_UTR 25.0%
! ATATTGACATTTGAAGAAGA+GGG - chr5_4:9653635-9653654 None:intergenic 25.0%
! TATATTGACATTTGAAGAAG+AGG - chr5_4:9653636-9653655 None:intergenic 25.0%
! TAATCTTCTTATTACTCTCA+TGG - chr5_4:9654930-9654949 None:intergenic 25.0%
! AGACATTAACAAACAAATTG+AGG + chr5_4:9653837-9653856 Msa0836180:five_prime_UTR 25.0%
!! TTCTTGAAGTAAAGTTCTAA+TGG - chr5_4:9654801-9654820 None:intergenic 25.0%
! TAAATGATTGTTTGTAGCAA+TGG + chr5_4:9654011-9654030 Msa0836180:five_prime_UTR 25.0%
!! TTCTTGAAGTAAAGTTCTAA+TGG - chr5_4:9654801-9654820 None:intergenic 25.0%
!!! AAGTTGATTTCTCTTTTTCA+TGG + chr5_4:9654198-9654217 Msa0836180:five_prime_UTR 25.0%
!!! AAGTTGATTTCTCTTTTTCA+TGG - chr5_4:9654198-9654217 None:intergenic 25.0%
! AAGAGAAATCAACTTCAATT+TGG + chr5_4:9654720-9654739 Msa0836180:five_prime_UTR 25.0%
!! TTCTTGAAGTAAAGTTCTAA+TGG + chr5_4:9654801-9654820 Msa0836180:five_prime_UTR 25.0%
! TAAATGATTGTTTGTAGCAA+TGG - chr5_4:9654011-9654030 None:intergenic 25.0%
! TAATCTTCTTATTACTCTCA+TGG + chr5_4:9654930-9654949 Msa0836180:five_prime_UTR 25.0%
! TTTATATTGACGTTTGAAGA+GGG + chr5_4:9655085-9655104 Msa0836180:five_prime_UTR 25.0%
!! TTTCCCTCTTTATTAGTTTA+TGG + chr5_4:9655277-9655296 Msa0836180:five_prime_UTR 25.0%
!! TATTTGTTGATTGTTTCTTG+TGG + chr5_4:9655335-9655354 Msa0836180:five_prime_UTR 25.0%
!! ATAACTGATGAAGAATGTTT+TGG - chr5_4:9655445-9655464 None:intergenic 25.0%
! AATAGCAATATTTCCACAAT+AGG - chr5_4:9655655-9655674 None:intergenic 25.0%
! AATTCAATGGAAATTGACAT+CGG + chr5_4:9655844-9655863 Msa0836180:five_prime_UTR 25.0%
! ATGTTTGGTTATTTGATCAT+GGG - chr5_4:9656065-9656084 None:intergenic 25.0%
! TATGTTTGGTTATTTGATCA+TGG - chr5_4:9656066-9656085 None:intergenic 25.0%
! TTTCAGACTTCAAATATGTT+TGG - chr5_4:9656080-9656099 None:intergenic 25.0%
! ATGTATTTAAAAACACAGGA+AGG - chr5_4:9656130-9656149 None:intergenic 25.0%
! AATCAAATGCTTAAAAGAAG+AGG - chr5_4:9656176-9656195 None:intergenic 25.0%
! AATTCATGTTTGTAAGCATT+TGG + chr5_4:9656202-9656221 Msa0836180:intron 25.0%
!! AAGCATTTGGTTTATAACAT+AGG + chr5_4:9656248-9656267 Msa0836180:intron 25.0%
!!! AAAAAGTGTCAACTTGTATA+TGG - chr5_4:9656309-9656328 None:intergenic 25.0%
! AATTTCAGACTACTATTGAT+CGG - chr5_4:9656431-9656450 None:intergenic 25.0%
! ATCTATAAAAGAATTCAGCA+GGG - chr5_4:9656660-9656679 None:intergenic 25.0%
! AATCTATAAAAGAATTCAGC+AGG - chr5_4:9656661-9656680 None:intergenic 25.0%
!! CATTTTCAATTTCTTTTTGG+TGG - chr5_4:9656919-9656938 None:intergenic 25.0%
! CACCAAAAAGAAATTGAAAA+TGG + chr5_4:9656917-9656936 Msa0836180:five_prime_UTR 25.0%
! GTGGTTTATCAATGAATAAA+TGG + chr5_4:9657436-9657455 Msa0836180:intron 25.0%
! GAGAACTTCTATTAAATGTT+TGG - chr5_4:9657530-9657549 None:intergenic 25.0%
! AGAAAAATACCAATATCTCA+TGG - chr5_4:9657752-9657771 None:intergenic 25.0%
! TAAAGCATAAAAAGAGAGAA+TGG - chr5_4:9657828-9657847 None:intergenic 25.0%
!! ACCTTGATTTTTGTAACAAA+AGG + chr5_4:9657875-9657894 Msa0836180:five_prime_UTR 25.0%
!! CCTTGATTTTTGTAACAAAA+GGG + chr5_4:9657876-9657895 Msa0836180:five_prime_UTR 25.0%
!! CTTGATTTTTGTAACAAAAG+GGG + chr5_4:9657877-9657896 Msa0836180:five_prime_UTR 25.0%
! AGTGTCAAATAGAACATTAA+AGG + chr5_4:9658320-9658339 Msa0836180:five_prime_UTR 25.0%
! AAATAGAACATTAAAGGACA+TGG + chr5_4:9658326-9658345 Msa0836180:five_prime_UTR 25.0%
! AATAGAACATTAAAGGACAT+GGG + chr5_4:9658327-9658346 Msa0836180:five_prime_UTR 25.0%
! TATAAAAGGATATATCCCAT+TGG - chr5_4:9658411-9658430 None:intergenic 25.0%
!! AAATGAAAAACTTCAGGTTT+AGG - chr5_4:9658848-9658867 None:intergenic 25.0%
! CATATGAAATGAAAAACTTC+AGG - chr5_4:9658854-9658873 None:intergenic 25.0%
!! TATAATTGTGTAACGTTTTC+AGG + chr5_4:9658898-9658917 Msa0836180:intron 25.0%
! TGCAAAATTCGATTAAATGA+GGG + chr5_4:9659397-9659416 Msa0836180:CDS 25.0%
! ATAGAATATCGAAATTCTCT+AGG - chr5_4:9659537-9659556 None:intergenic 25.0%
TGGTCAAGTGAAATTCAAAT+AGG + chr5_4:9653476-9653495 Msa0836180:five_prime_UTR 30.0%
GGTCAAGTGAAATTCAAATA+GGG + chr5_4:9653477-9653496 Msa0836180:five_prime_UTR 30.0%
GTCAAGTGAAATTCAAATAG+GGG + chr5_4:9653478-9653497 Msa0836180:five_prime_UTR 30.0%
AATTTGAATTGCTAGGAAGT+TGG + chr5_4:9653590-9653609 Msa0836180:five_prime_UTR 30.0%
TCCAATTTCAACATATTTGG+TGG - chr5_4:9655054-9655073 None:intergenic 30.0%
GTCTCCAATTTCAACATATT+TGG - chr5_4:9655051-9655070 None:intergenic 30.0%
GAAACTAAATGCAAAGTGAT+AGG - chr5_4:9653749-9653768 None:intergenic 30.0%
CATTAACAAACAAATTGAGG+AGG + chr5_4:9653840-9653859 Msa0836180:five_prime_UTR 30.0%
TCAAGAATTGAAGACTTTGA+TGG + chr5_4:9653927-9653946 Msa0836180:five_prime_UTR 30.0%
TCAAGAATTGAAGACTTTGA+TGG + chr5_4:9653927-9653946 Msa0836180:five_prime_UTR 30.0%
AAGAGAAATCAACTTCAGTT+TGG - chr5_4:9654193-9654212 None:intergenic 30.0%
TGAAGATTCACTGTCAATTT+GGG - chr5_4:9654409-9654428 None:intergenic 30.0%
TTGAAGATTCACTGTCAATT+TGG - chr5_4:9654410-9654429 None:intergenic 30.0%
CAATGACAACATTATCAAAC+AGG - chr5_4:9654623-9654642 None:intergenic 30.0%
TCAAGAATTGAAGACTTTGA+TGG - chr5_4:9653927-9653946 None:intergenic 30.0%
AGACATTAACAAACAGATTG+AGG - chr5_4:9654878-9654897 None:intergenic 30.0%
GTCTCCAATTTCAACATATT+TGG + chr5_4:9655051-9655070 Msa0836180:five_prime_UTR 30.0%
TCCAATTTCAACATATTTGG+TGG + chr5_4:9655054-9655073 Msa0836180:five_prime_UTR 30.0%
CTTTATATTGACGTTTGAAG+AGG + chr5_4:9655084-9655103 Msa0836180:five_prime_UTR 30.0%
GTGCCATAAACTAATAAAGA+GGG - chr5_4:9655283-9655302 None:intergenic 30.0%
TGTGCCATAAACTAATAAAG+AGG - chr5_4:9655284-9655303 None:intergenic 30.0%
CTTACTAAGGGTTGTTATAT+TGG + chr5_4:9655397-9655416 Msa0836180:five_prime_UTR 30.0%
GAAGAATTAAGCTATCAAGT+AGG + chr5_4:9655493-9655512 Msa0836180:five_prime_UTR 30.0%
AAATTGTGTACAACCGTAAT+TGG + chr5_4:9655545-9655564 Msa0836180:five_prime_UTR 30.0%
!! TATTGATGATGATGTTGAAC+AGG + chr5_4:9655723-9655742 Msa0836180:intron 30.0%
GGAAAGATCTTGAAATACAT+GGG + chr5_4:9655809-9655828 Msa0836180:five_prime_UTR 30.0%
TATTTAAAAACACAGGAAGG+TGG - chr5_4:9656127-9656146 None:intergenic 30.0%
ATTCATGTTGTCTAAGCATT+TGG + chr5_4:9656235-9656254 Msa0836180:intron 30.0%
! TTTTTAACAGAGTTCAACTG+CGG + chr5_4:9656328-9656347 Msa0836180:intron 30.0%
CGGACTGATAGTTATATAAA+AGG - chr5_4:9656411-9656430 None:intergenic 30.0%
AATAGAGTAGACATCAAACT+TGG - chr5_4:9656714-9656733 None:intergenic 30.0%
!!! ATGACTGTTTTTTCTTCTAG+TGG + chr5_4:9656801-9656820 Msa0836180:intron 30.0%
!!! TGACTGTTTTTTCTTCTAGT+GGG + chr5_4:9656802-9656821 Msa0836180:intron 30.0%
TAAAACTGGGAAAAAGTTGA+AGG + chr5_4:9657052-9657071 Msa0836180:five_prime_UTR 30.0%
AAAACTGGGAAAAAGTTGAA+GGG + chr5_4:9657053-9657072 Msa0836180:five_prime_UTR 30.0%
!! GATCAATAATTTTAAGGGAG+TGG - chr5_4:9657201-9657220 None:intergenic 30.0%
ATCTATAAGAGAATTCAGCA+GGG - chr5_4:9657402-9657421 None:intergenic 30.0%
ATAGAAGTTCTCTTGATTTC+AGG + chr5_4:9657538-9657557 Msa0836180:intron 30.0%
! TTGATTCCGTCAAGTATTTT+AGG + chr5_4:9657679-9657698 Msa0836180:five_prime_UTR 30.0%
! CCCTTTTGTTACAAAAATCA+AGG - chr5_4:9657879-9657898 None:intergenic 30.0%
! ACCAACGACAATATTTTCTT+CGG - chr5_4:9658130-9658149 None:intergenic 30.0%
AAAGAAATGGTCATGTATGT+TGG - chr5_4:9658157-9658176 None:intergenic 30.0%
TTTCAGTAGGAAGAAAGAAA+TGG - chr5_4:9658170-9658189 None:intergenic 30.0%
TTCTTTCTTCCTACTGAAAA+AGG + chr5_4:9658171-9658190 Msa0836180:five_prime_UTR 30.0%
TCTTTCTTCCTACTGAAAAA+GGG + chr5_4:9658172-9658191 Msa0836180:five_prime_UTR 30.0%
! AAGTGTGTTGATCATAACTA+TGG - chr5_4:9658786-9658805 None:intergenic 30.0%
! TCATTATGTTTAGTGTTGGA+GGG - chr5_4:9658941-9658960 None:intergenic 30.0%
! ATCATTATGTTTAGTGTTGG+AGG - chr5_4:9658942-9658961 None:intergenic 30.0%
AGAGTAGATTGTTTGGAAAT+AGG + chr5_4:9658972-9658991 Msa0836180:five_prime_UTR 30.0%
GAGTAGATTGTTTGGAAATA+GGG + chr5_4:9658973-9658992 Msa0836180:five_prime_UTR 30.0%
AATCATCATAGAGGAATACT+TGG - chr5_4:9659056-9659075 None:intergenic 30.0%
!!! TTGAACAGTTTTGAGTTAAC+TGG - chr5_4:9659123-9659142 None:intergenic 30.0%
! TATGATCAACAATCTAGCTT+AGG - chr5_4:9659235-9659254 None:intergenic 30.0%
! TTCTTGATTTGAGAACAGTT+TGG - chr5_4:9659355-9659374 None:intergenic 30.0%
! TAATCGAATTTTGCACTTAC+TGG - chr5_4:9659392-9659411 None:intergenic 30.0%
GTGCAAAATTCGATTAAATG+AGG + chr5_4:9659396-9659415 Msa0836180:CDS 30.0%
! ACCATATCTTTTTACAATGC+TGG - chr5_4:9659426-9659445 None:intergenic 30.0%
! ATTTCAACATATTTGGTGGC+AGG - chr5_4:9655058-9655077 None:intergenic 35.0%
GCCACCAAATATGTTGAAAT+TGG + chr5_4:9653665-9653684 Msa0836180:five_prime_UTR 35.0%
AAACTCACCAATAGTTTCCT+GGG - chr5_4:9655027-9655046 None:intergenic 35.0%
AAAACTCACCAATAGTTTCC+TGG - chr5_4:9653697-9653716 None:intergenic 35.0%
TGATTGTTTGTAGCAATGGA+AGG + chr5_4:9654015-9654034 Msa0836180:five_prime_UTR 35.0%
AGGCATTAACAAACAGATTG+AGG + chr5_4:9654035-9654054 Msa0836180:five_prime_UTR 35.0%
ACAAATTCCTTCACATCAGA+AGG - chr5_4:9654249-9654268 None:intergenic 35.0%
CAATGTCAACATAGTCAAAC+AGG + chr5_4:9654290-9654309 Msa0836180:five_prime_UTR 35.0%
ACACTTCTCAACAAGTACTT+AGG + chr5_4:9654313-9654332 Msa0836180:five_prime_UTR 35.0%
! CAGTTTTCGAATCAAGAAGT+TGG - chr5_4:9654347-9654366 None:intergenic 35.0%
CTGATCTTATGAACAAGCTT+AGG + chr5_4:9654364-9654383 Msa0836180:intron 35.0%
GAACAAATGTGATGTTCAGA+AGG + chr5_4:9654509-9654528 Msa0836180:intron 35.0%
CATTAACAAACAGATTGAGG+AGG - chr5_4:9654038-9654057 None:intergenic 35.0%
TTAAGAAGCTAAACGCAAAG+TGG + chr5_4:9654970-9654989 Msa0836180:intron 35.0%
TAAGAAGCTAAACGCAAAGT+GGG + chr5_4:9654971-9654990 Msa0836180:intron 35.0%
AAACTCACCAATAGTTTCCT+GGG + chr5_4:9655027-9655046 Msa0836180:intron 35.0%
GCCACCAAATATGTTGAAAT+TGG - chr5_4:9653665-9653684 None:intergenic 35.0%
! ATTTCAACATATTTGGTGGC+AGG + chr5_4:9655058-9655077 Msa0836180:five_prime_UTR 35.0%
! TTTCTGATTGCTGTTCACAT+TGG + chr5_4:9655200-9655219 Msa0836180:five_prime_UTR 35.0%
GTTATATTGGTGCGAATACT+TGG + chr5_4:9655410-9655429 Msa0836180:five_prime_UTR 35.0%
TCTTCAAAACATCTCTTTCG+TGG - chr5_4:9655478-9655497 None:intergenic 35.0%
AGAGTAGTATTTAGTCAGGA+GGG + chr5_4:9655757-9655776 Msa0836180:five_prime_UTR 35.0%
AGTTGCTCAAAAGATATCAG+AGG + chr5_4:9655783-9655802 Msa0836180:five_prime_UTR 35.0%
GGGAAAGATCTTGAAATACA+TGG + chr5_4:9655808-9655827 Msa0836180:five_prime_UTR 35.0%
GATGACAGACAACAATTCAA+TGG + chr5_4:9655831-9655850 Msa0836180:five_prime_UTR 35.0%
TCCAATTCCTATTGATGTAG+AGG + chr5_4:9655903-9655922 Msa0836180:five_prime_UTR 35.0%
TCCTCTACATCAATAGGAAT+TGG - chr5_4:9655907-9655926 None:intergenic 35.0%
TGTTTGTCCTCTACATCAAT+AGG - chr5_4:9655913-9655932 None:intergenic 35.0%
AGACGGAATTTAATTCAACC+AGG + chr5_4:9655933-9655952 Msa0836180:five_prime_UTR 35.0%
GGAATTTAATTCAACCAGGA+GGG + chr5_4:9655937-9655956 Msa0836180:five_prime_UTR 35.0%
GAATTTAATTCAACCAGGAG+GGG + chr5_4:9655938-9655957 Msa0836180:five_prime_UTR 35.0%
!!! TGCTTCTGTTGATTAGCTTT+TGG - chr5_4:9655989-9656008 None:intergenic 35.0%
TTTGGTTATTTGATCATGGG+TGG - chr5_4:9656062-9656081 None:intergenic 35.0%
ACATTGATCTGTTTAGGCAT+TGG + chr5_4:9656146-9656165 Msa0836180:intron 35.0%
! TTTTAACAGAGTTCAACTGC+GGG + chr5_4:9656329-9656348 Msa0836180:intron 35.0%
! CGAAAAGTCTTATCTCTAAG+TGG - chr5_4:9657012-9657031 None:intergenic 35.0%
TCATGCAAGAGAGATAAAAC+TGG + chr5_4:9657038-9657057 Msa0836180:five_prime_UTR 35.0%
CATGCAAGAGAGATAAAACT+GGG + chr5_4:9657039-9657058 Msa0836180:five_prime_UTR 35.0%
!! AATAATTTTAAGGGAGTGGC+AGG - chr5_4:9657197-9657216 None:intergenic 35.0%
TCGAATTACTGCAAAATTGC+AGG + chr5_4:9657276-9657295 Msa0836180:intron 35.0%
GAAAGTGAATAAGCAGTTTC+TGG + chr5_4:9657354-9657373 Msa0836180:five_prime_UTR 35.0%
GATCTATAAGAGAATTCAGC+AGG - chr5_4:9657403-9657422 None:intergenic 35.0%
TAGATCAAGAGTAAGTTCAG+TGG + chr5_4:9657417-9657436 Msa0836180:intron 35.0%
! TTTAGTTCAGAAGAAGCAAC+TGG - chr5_4:9657470-9657489 None:intergenic 35.0%
CTTCTGTTTAAGCTGATTGA+AGG + chr5_4:9657566-9657585 Msa0836180:five_prime_UTR 35.0%
TTCAGGCCTAAAATACTTGA+CGG - chr5_4:9657688-9657707 None:intergenic 35.0%
!! AGTATTTTAGGCCTGAAAGA+AGG + chr5_4:9657691-9657710 Msa0836180:five_prime_UTR 35.0%
CAATATCTCATGGTAAACGA+AGG - chr5_4:9657742-9657761 None:intergenic 35.0%
CTTCGTTTACCATGAGATAT+TGG + chr5_4:9657740-9657759 Msa0836180:five_prime_UTR 35.0%
!! GTTTCTCAACTTGCTACATA+TGG + chr5_4:9657899-9657918 Msa0836180:five_prime_UTR 35.0%
TAATCATCCCCTTTCTTTGA+AGG - chr5_4:9657934-9657953 None:intergenic 35.0%
ACCGAAGAAAATATTGTCGT+TGG + chr5_4:9658126-9658145 Msa0836180:five_prime_UTR 35.0%
TTTCGTTTGCCATACTTTGA+AGG + chr5_4:9658213-9658232 Msa0836180:five_prime_UTR 35.0%
ATGTCTATCTTGTCATCCAA+TGG + chr5_4:9658392-9658411 Msa0836180:intron 35.0%
TGTCTATCTTGTCATCCAAT+GGG + chr5_4:9658393-9658412 Msa0836180:intron 35.0%
AAGTTAGGGGGAAAAAGAAA+AGG - chr5_4:9658522-9658541 None:intergenic 35.0%
! TTTTCCCCCTAACTTCTATT+AGG + chr5_4:9658527-9658546 Msa0836180:intron 35.0%
CCAAAATATATTGCCTACCA+GGG + chr5_4:9658554-9658573 Msa0836180:five_prime_UTR 35.0%
AATATTGCAAGTGAGCTATG+AGG - chr5_4:9658587-9658606 None:intergenic 35.0%
CACTGAATGCAAGAAATTTC+AGG + chr5_4:9658656-9658675 Msa0836180:five_prime_UTR 35.0%
! AGAAATTTCAGGAGTGTGAA+AGG + chr5_4:9658667-9658686 Msa0836180:five_prime_UTR 35.0%
GATCAACACACTTCAAAGAA+TGG + chr5_4:9658793-9658812 Msa0836180:five_prime_UTR 35.0%
! CATTATGTTTAGTGTTGGAG+GGG - chr5_4:9658940-9658959 None:intergenic 35.0%
TTCCAAACAATCTACTCTCA+AGG - chr5_4:9658970-9658989 None:intergenic 35.0%
ATGGTAGAGAATCATCATAG+AGG - chr5_4:9659065-9659084 None:intergenic 35.0%
!! TCATTTTGAGTCATCGCATT+AGG - chr5_4:9659097-9659116 None:intergenic 35.0%
AGTATGTCAATCTGAGAATC+AGG + chr5_4:9659147-9659166 Msa0836180:five_prime_UTR 35.0%
!! CTTATTGACTTACACACAGA+TGG + chr5_4:9659255-9659274 Msa0836180:intron 35.0%
GCCAGCATTGTAAAAAGATA+TGG + chr5_4:9659422-9659441 Msa0836180:CDS 35.0%
TTATACTAACTTCTCACTCC+AGG + chr5_4:9659446-9659465 Msa0836180:CDS 35.0%
TTTCCAAAACTTCAGCTCTA+CGG - chr5_4:9659728-9659747 None:intergenic 35.0%
ATTCAATGGTTGAGAACCTA+AGG + chr5_4:9660003-9660022 Msa0836180:three_prime_UTR 35.0%
GCTATAACATTGTTGCGTAG+CGG + chr5_4:9653338-9653357 Msa0836180:five_prime_UTR 40.0%
AAAATTCGGCCACGATTAAG+TGG + chr5_4:9653384-9653403 Msa0836180:five_prime_UTR 40.0%
GGTTAGATACAAGATGGTCA+AGG - chr5_4:9654749-9654768 None:intergenic 40.0%
ACTCGTGGTTAGATACAAGA+TGG - chr5_4:9654743-9654762 None:intergenic 40.0%
ACTCTTACCTTCTGATGTGA+AGG + chr5_4:9654239-9654258 Msa0836180:five_prime_UTR 40.0%
TGTTCAGAAGGAGAAGTTGA+TGG + chr5_4:9654521-9654540 Msa0836180:intron 40.0%
! TTGATGGCTAATGCACTGAA+TGG + chr5_4:9654537-9654556 Msa0836180:intron 40.0%
TGATGGCTAATGCACTGAAT+GGG + chr5_4:9654538-9654557 Msa0836180:intron 40.0%
ACTTTCTGATTGTGCTTCCT+TGG + chr5_4:9654580-9654599 Msa0836180:five_prime_UTR 40.0%
ACACTTCTCAACAAGTACCA+AGG - chr5_4:9654600-9654619 None:intergenic 40.0%
ACAAACTCCTTCACATCAGA+AGG + chr5_4:9654664-9654683 Msa0836180:five_prime_UTR 40.0%
ACTCATACCTTCTGATGTGA+AGG - chr5_4:9654674-9654693 None:intergenic 40.0%
TCAACTTCAATTTGGACTCG+TGG + chr5_4:9654728-9654747 Msa0836180:five_prime_UTR 40.0%
ACTCGTGGTTAGATACAAGA+TGG + chr5_4:9654743-9654762 Msa0836180:five_prime_UTR 40.0%
GGTTAGATACAAGATGGTCA+AGG + chr5_4:9654749-9654768 Msa0836180:five_prime_UTR 40.0%
GAAACTCACCAATAGTTTCC+TGG + chr5_4:9655026-9655045 Msa0836180:intron 40.0%
AAGCGAGAAGATGCTTACTA+AGG + chr5_4:9655384-9655403 Msa0836180:five_prime_UTR 40.0%
AGCGAGAAGATGCTTACTAA+GGG + chr5_4:9655385-9655404 Msa0836180:five_prime_UTR 40.0%
CGAGAAATTTGCACCTATTG+TGG + chr5_4:9655639-9655658 Msa0836180:intron 40.0%
! ATTTACCGATGCTGCTTCAA+AGG + chr5_4:9655672-9655691 Msa0836180:intron 40.0%
!! ACAAACCTTTGAAGCAGCAT+CGG - chr5_4:9655680-9655699 None:intergenic 40.0%
GATGTTGAACAGGACATACA+AGG + chr5_4:9655733-9655752 Msa0836180:intron 40.0%
AGGCAGAGTAGTATTTAGTC+AGG + chr5_4:9655753-9655772 Msa0836180:five_prime_UTR 40.0%
CAGAGTAGTATTTAGTCAGG+AGG + chr5_4:9655756-9655775 Msa0836180:five_prime_UTR 40.0%
GAGTAGTATTTAGTCAGGAG+GGG + chr5_4:9655758-9655777 Msa0836180:five_prime_UTR 40.0%
TGCTCAAAAGATATCAGAGG+AGG + chr5_4:9655786-9655805 Msa0836180:five_prime_UTR 40.0%
GCTCAAAAGATATCAGAGGA+GGG + chr5_4:9655787-9655806 Msa0836180:five_prime_UTR 40.0%
CTCAAAAGATATCAGAGGAG+GGG + chr5_4:9655788-9655807 Msa0836180:five_prime_UTR 40.0%
! AATTGGAAGCTGGCTTATGA+GGG - chr5_4:9655890-9655909 None:intergenic 40.0%
CATCAATAGGAATTGGAAGC+TGG - chr5_4:9655900-9655919 None:intergenic 40.0%
GATGTAGAGGACAAACAAGA+CGG + chr5_4:9655916-9655935 Msa0836180:five_prime_UTR 40.0%
CGGAATTTAATTCAACCAGG+AGG + chr5_4:9655936-9655955 Msa0836180:five_prime_UTR 40.0%
TCTGAAAAAGCAATCCGTTC+AGG + chr5_4:9656093-9656112 Msa0836180:five_prime_UTR 40.0%
ATGCATGACTCCAAAACTGT+AGG + chr5_4:9656534-9656553 Msa0836180:intron 40.0%
! GCAACTACAACCTACAGTTT+TGG - chr5_4:9656547-9656566 None:intergenic 40.0%
GTTATCTGTTGACAACCAAC+TGG + chr5_4:9656591-9656610 Msa0836180:five_prime_UTR 40.0%
AGTGGGATGAATGCAATAGA+TGG + chr5_4:9656819-9656838 Msa0836180:intron 40.0%
AATGCATGTTCCCTTACCAA+AGG + chr5_4:9656940-9656959 Msa0836180:five_prime_UTR 40.0%
AGGGAATGAGAATCTTGATG+AGG + chr5_4:9657072-9657091 Msa0836180:five_prime_UTR 40.0%
! GGAGCAGATGTATGCATTTT+TGG + chr5_4:9657587-9657606 Msa0836180:five_prime_UTR 40.0%
!!! CATTTTTGGAATGTACGTCC+AGG + chr5_4:9657601-9657620 Msa0836180:five_prime_UTR 40.0%
TGCATTCAGAGTCAAATTCC+TGG - chr5_4:9657622-9657641 None:intergenic 40.0%
! ATGGTAAACGAAGGTACGAA+GGG - chr5_4:9657733-9657752 None:intergenic 40.0%
AGAAACAAAAGACAGACCAG+CGG - chr5_4:9658011-9658030 None:intergenic 40.0%
!!! TTGGAGTTCCCTTTTTCAGT+AGG - chr5_4:9658183-9658202 None:intergenic 40.0%
TACTGAAAAAGGGAACTCCA+AGG + chr5_4:9658182-9658201 Msa0836180:five_prime_UTR 40.0%
!!! ACTCTCTTTTTCGAAGGTCT+TGG - chr5_4:9658271-9658290 None:intergenic 40.0%
! ACCTTCGAAAAAGAGAGTGT+AGG + chr5_4:9658273-9658292 Msa0836180:five_prime_UTR 40.0%
!!! TCCTACACTCTCTTTTTCGA+AGG - chr5_4:9658277-9658296 None:intergenic 40.0%
CCAACCTAATAGAAGTTAGG+GGG - chr5_4:9658534-9658553 None:intergenic 40.0%
GCCAACCTAATAGAAGTTAG+GGG - chr5_4:9658535-9658554 None:intergenic 40.0%
GGCCAACCTAATAGAAGTTA+GGG - chr5_4:9658536-9658555 None:intergenic 40.0%
TGGCCAACCTAATAGAAGTT+AGG - chr5_4:9658537-9658556 None:intergenic 40.0%
GCCAAAATATATTGCCTACC+AGG + chr5_4:9658553-9658572 Msa0836180:five_prime_UTR 40.0%
! CCCTGGTAGGCAATATATTT+TGG - chr5_4:9658557-9658576 None:intergenic 40.0%
ACACACTTCAAAGAATGGTG+AGG + chr5_4:9658798-9658817 Msa0836180:five_prime_UTR 40.0%
GTCCTTGAGAGTAGATTGTT+TGG + chr5_4:9658965-9658984 Msa0836180:five_prime_UTR 40.0%
CAAACTGAAACTGAGACTTC+TGG - chr5_4:9659018-9659037 None:intergenic 40.0%
TCGCATTAGGATTGTGTAGA+TGG - chr5_4:9659084-9659103 None:intergenic 40.0%
!! GCACTGATTTCTGTTCTACA+TGG - chr5_4:9659692-9659711 None:intergenic 40.0%
! CATTGTTGCGTAGCGGAATT+CGG + chr5_4:9653345-9653364 Msa0836180:five_prime_UTR 45.0%
AGCGCTATACCACTTAATCG+TGG - chr5_4:9653396-9653415 None:intergenic 45.0%
TGTTGAAATTGGAGACTCCC+AGG + chr5_4:9653676-9653695 Msa0836180:five_prime_UTR 45.0%
AGCGTCTCAAATGCAAGAAG+CGG - chr5_4:9653868-9653887 None:intergenic 45.0%
! GCATTTGAGACGCTTCTTAC+TGG + chr5_4:9653874-9653893 Msa0836180:five_prime_UTR 45.0%
AGCGTCTCAAATGCAAGAAG+CGG - chr5_4:9653868-9653887 None:intergenic 45.0%
! GCATTTGAGACGCTTCTTAC+TGG + chr5_4:9653874-9653893 Msa0836180:five_prime_UTR 45.0%
TCAACTTCAGTTTGGACTCG+TGG - chr5_4:9654185-9654204 None:intergenic 45.0%
! CATGGACTGAATCAACATCG+AGG + chr5_4:9654216-9654235 Msa0836180:five_prime_UTR 45.0%
! CATGGACTGAATCAGCATCA+AGG - chr5_4:9654697-9654716 None:intergenic 45.0%
GCATTTGAGTCGCTTCTTAC+TGG - chr5_4:9654841-9654860 None:intergenic 45.0%
AGCGACTCAAATGCAAGAAG+CGG + chr5_4:9654847-9654866 Msa0836180:five_prime_UTR 45.0%
TGTTGAAATTGGAGACTCCC+AGG - chr5_4:9653676-9653695 None:intergenic 45.0%
AAGTAGGATTCTCCACAGAC+TGG + chr5_4:9655509-9655528 Msa0836180:five_prime_UTR 45.0%
! GAATTGGAAGCTGGCTTATG+AGG - chr5_4:9655891-9655910 None:intergenic 45.0%
ATGGGTGGACAGATCAATCA+AGG - chr5_4:9656047-9656066 None:intergenic 45.0%
TCAGCAGGGTAATTCTCATC+TGG - chr5_4:9656646-9656665 None:intergenic 45.0%
GAATTAGCCGCCTTTGGTAA+GGG - chr5_4:9656953-9656972 None:intergenic 45.0%
AGAATTAGCCGCCTTTGGTA+AGG - chr5_4:9656954-9656973 None:intergenic 45.0%
TTACCAAAGGCGGCTAATTC+TGG + chr5_4:9656953-9656972 Msa0836180:five_prime_UTR 45.0%
TGGTCACTTAGCACTGTTCT+TGG - chr5_4:9656992-9657011 None:intergenic 45.0%
AGTTCAGAAGAAGCAACTGG+TGG - chr5_4:9657467-9657486 None:intergenic 45.0%
!! TGCATACACAAGCGCTGATT+GGG - chr5_4:9657650-9657669 None:intergenic 45.0%
!! ATGCATACACAAGCGCTGAT+TGG - chr5_4:9657651-9657670 None:intergenic 45.0%
CCACACTTTGTCCTTCTTTC+AGG - chr5_4:9657705-9657724 None:intergenic 45.0%
CCTGAAAGAAGGACAAAGTG+TGG + chr5_4:9657702-9657721 Msa0836180:five_prime_UTR 45.0%
! CATGGTAAACGAAGGTACGA+AGG - chr5_4:9657734-9657753 None:intergenic 45.0%
ACCTGTGCTCCTTCAAAGAA+AGG + chr5_4:9657922-9657941 Msa0836180:five_prime_UTR 45.0%
CCTGTGCTCCTTCAAAGAAA+GGG + chr5_4:9657923-9657942 Msa0836180:five_prime_UTR 45.0%
CTGTGCTCCTTCAAAGAAAG+GGG + chr5_4:9657924-9657943 Msa0836180:five_prime_UTR 45.0%
! TTCGGAGTCTTTTGCTCTTC+GGG - chr5_4:9657973-9657992 None:intergenic 45.0%
! CTTCGGAGTCTTTTGCTCTT+CGG - chr5_4:9657974-9657993 None:intergenic 45.0%
CGGCGTAGCTTATCATTCTT+CGG - chr5_4:9657991-9658010 None:intergenic 45.0%
CAAACGAAAAGCTGTCACCT+TGG - chr5_4:9658202-9658221 None:intergenic 45.0%
CAGCAGTCTCCTTCAAAGTA+TGG - chr5_4:9658225-9658244 None:intergenic 45.0%
! CATACTTTGAAGGAGACTGC+TGG + chr5_4:9658223-9658242 Msa0836180:five_prime_UTR 45.0%
ATCACCAGAGTCTCTTTGGA+AGG - chr5_4:9658363-9658382 None:intergenic 45.0%
TTGCATCACCAGAGTCTCTT+TGG - chr5_4:9658367-9658386 None:intergenic 45.0%
CCCCCTAACTTCTATTAGGT+TGG + chr5_4:9658531-9658550 Msa0836180:intron 45.0%
! ATGAGGAAGTTTTCCCTGGT+AGG - chr5_4:9658570-9658589 None:intergenic 45.0%
! AGCTATGAGGAAGTTTTCCC+TGG - chr5_4:9658574-9658593 None:intergenic 45.0%
TCCCAGACACTATCACTTCA+CGG - chr5_4:9658623-9658642 None:intergenic 45.0%
GGAGGGGATATCATCAACAA+CGG - chr5_4:9658924-9658943 None:intergenic 45.0%
TAGAGGAATACTTGGCACGA+CGG - chr5_4:9659048-9659067 None:intergenic 45.0%
GAACAGTTTGGATGAGAGCA+TGG - chr5_4:9659343-9659362 None:intergenic 45.0%
CTCCAGGAATTGCAAAGACT+CGG + chr5_4:9659462-9659481 Msa0836180:CDS 45.0%
TTCCGAGTCTTTGCAATTCC+TGG - chr5_4:9659467-9659486 None:intergenic 45.0%
AATGTAGAATACCACGCTGC+AGG + chr5_4:9659485-9659504 Msa0836180:CDS 45.0%
! TTGCCGTAGAGCTGAAGTTT+TGG + chr5_4:9659722-9659741 Msa0836180:CDS 45.0%
!!! GCTGAAGTTTTGGAAAGCGA+TGG + chr5_4:9659732-9659751 Msa0836180:CDS 45.0%
!!! TAATATAAGAATTATAATTT+TGG - chr5_4:9653966-9653985 None:intergenic 5.0%
GGAGACTCCCAGGAAACTAT+TGG + chr5_4:9653686-9653705 Msa0836180:five_prime_UTR 50.0%
GCGTCTCAAATGCAAGAAGC+GGG - chr5_4:9653867-9653886 None:intergenic 50.0%
GCGACTCAAATGCAAGAAGC+GGG + chr5_4:9654848-9654867 Msa0836180:five_prime_UTR 50.0%
GAAGCTAAACGCAAAGTGGG+AGG + chr5_4:9654974-9654993 Msa0836180:intron 50.0%
GGAGACTCCCAGGAAACTAT+TGG - chr5_4:9653686-9653705 None:intergenic 50.0%
TAGGATTCTCCACAGACTGG+CGG + chr5_4:9655512-9655531 Msa0836180:five_prime_UTR 50.0%
AGAATGATACCGCCAGTCTG+TGG - chr5_4:9655524-9655543 None:intergenic 50.0%
AGGTGGCGTACTAACCTGAA+CGG - chr5_4:9656110-9656129 None:intergenic 50.0%
ACTGCTTCTTCACTGCCAGT+TGG - chr5_4:9656609-9656628 None:intergenic 50.0%
GGCAGTGAAGAAGCAGTTTC+TGG + chr5_4:9656612-9656631 Msa0836180:five_prime_UTR 50.0%
GCATGTTCCCTTACCAAAGG+CGG + chr5_4:9656943-9656962 Msa0836180:five_prime_UTR 50.0%
! GTTTCTGGACATCATCCCAG+AGG + chr5_4:9657369-9657388 Msa0836180:five_prime_UTR 50.0%
CAGCAGGGTAATTCTCCTCT+GGG - chr5_4:9657387-9657406 None:intergenic 50.0%
TCAGCAGGGTAATTCTCCTC+TGG - chr5_4:9657388-9657407 None:intergenic 50.0%
! CCCTTTCTTTGAAGGAGCAC+AGG - chr5_4:9657926-9657945 None:intergenic 50.0%
! GAGTCTTTTGCTCTTCGGGA+TGG - chr5_4:9657969-9657988 None:intergenic 50.0%
AGAATGATAAGCTACGCCGC+TGG + chr5_4:9657992-9658011 Msa0836180:five_prime_UTR 50.0%
TTTGAAGGAGACTGCTGGTG+TGG + chr5_4:9658228-9658247 Msa0836180:five_prime_UTR 50.0%
! CTGCTGGTGTGGTAATGCTA+TGG + chr5_4:9658239-9658258 Msa0836180:five_prime_UTR 50.0%
! CAGAGTCTCTTTGGAAGGCT+TGG - chr5_4:9658358-9658377 None:intergenic 50.0%
CAAGCCTTCCAAAGAGACTC+TGG + chr5_4:9658356-9658375 Msa0836180:five_prime_UTR 50.0%
! TGCCGTGAAGTGATAGTGTC+TGG + chr5_4:9658618-9658637 Msa0836180:five_prime_UTR 50.0%
! GCCGTGAAGTGATAGTGTCT+GGG + chr5_4:9658619-9658638 Msa0836180:five_prime_UTR 50.0%
! TGATAGTGTCTGGGAAGCGA+TGG + chr5_4:9658628-9658647 Msa0836180:five_prime_UTR 50.0%
TGAGGTGCATACGCTTTGTC+AGG + chr5_4:9658816-9658835 Msa0836180:five_prime_UTR 50.0%
ATGGCTCAGCATTACTTGCC+CGG - chr5_4:9659324-9659343 None:intergenic 50.0%
ATTGTAACACACCTGCAGCG+TGG - chr5_4:9659499-9659518 None:intergenic 50.0%
GAAAGCGATGGAGCAATCGT+TGG + chr5_4:9659744-9659763 Msa0836180:CDS 50.0%
CTTGAGAATCTGTCCCCTCC+TGG - chr5_4:9655954-9655973 None:intergenic 55.0%
GCACCAGAATTAGCCGCCTT+TGG - chr5_4:9656959-9656978 None:intergenic 55.0%
! GGCGGCTAATTCTGGTGCTA+AGG + chr5_4:9656961-9656980 Msa0836180:five_prime_UTR 55.0%
ATGCATCTCAATGCCGCCGC+CGG + chr5_4:9659302-9659321 Msa0836180:CDS 60.0%
GCTCAGCATTACTTGCCCGG+CGG - chr5_4:9659321-9659340 None:intergenic 60.0%
TGCATCTCAATGCCGCCGCC+GGG + chr5_4:9659303-9659322 Msa0836180:CDS 65.0%
CAGCATTACTTGCCCGGCGG+CGG - chr5_4:9659318-9659337 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr5_4 gene 9653325 9660036 9653325 ID=Msa0836180;Name=Msa0836180
chr5_4 mRNA 9653325 9660036 9653325 ID=Msa0836180-mRNA-1;Parent=Msa0836180;Name=Msa0836180-mRNA-1;_AED=0.12;_eAED=0.12;_QI=3854|1|1|1|0.56|0.47|17|242|109
chr5_4 exon 9653325 9653707 9653325 ID=Msa0836180-mRNA-1:exon:4229;Parent=Msa0836180-mRNA-1
chr5_4 exon 9653830 9654337 9653830 ID=Msa0836180-mRNA-1:exon:4230;Parent=Msa0836180-mRNA-1
chr5_4 exon 9654560 9654988 9654560 ID=Msa0836180-mRNA-1:exon:4231;Parent=Msa0836180-mRNA-1
chr5_4 exon 9655050 9655581 9655050 ID=Msa0836180-mRNA-1:exon:4232;Parent=Msa0836180-mRNA-1
chr5_4 exon 9655745 9656114 9655745 ID=Msa0836180-mRNA-1:exon:4233;Parent=Msa0836180-mRNA-1
chr5_4 exon 9656556 9656684 9656556 ID=Msa0836180-mRNA-1:exon:4234;Parent=Msa0836180-mRNA-1
chr5_4 exon 9656821 9657093 9656821 ID=Msa0836180-mRNA-1:exon:4235;Parent=Msa0836180-mRNA-1
chr5_4 exon 9657298 9657426 9657298 ID=Msa0836180-mRNA-1:exon:4236;Parent=Msa0836180-mRNA-1
chr5_4 exon 9657560 9657761 9657560 ID=Msa0836180-mRNA-1:exon:4237;Parent=Msa0836180-mRNA-1
chr5_4 exon 9657868 9658013 9657868 ID=Msa0836180-mRNA-1:exon:4238;Parent=Msa0836180-mRNA-1
chr5_4 exon 9658101 9658389 9658101 ID=Msa0836180-mRNA-1:exon:4239;Parent=Msa0836180-mRNA-1
chr5_4 exon 9658549 9658688 9658549 ID=Msa0836180-mRNA-1:exon:4240;Parent=Msa0836180-mRNA-1
chr5_4 exon 9658780 9658837 9658780 ID=Msa0836180-mRNA-1:exon:4241;Parent=Msa0836180-mRNA-1
chr5_4 exon 9658920 9659185 9658920 ID=Msa0836180-mRNA-1:exon:4242;Parent=Msa0836180-mRNA-1
chr5_4 exon 9659274 9659506 9659274 ID=Msa0836180-mRNA-1:exon:4243;Parent=Msa0836180-mRNA-1
chr5_4 exon 9659677 9659872 9659677 ID=Msa0836180-mRNA-1:exon:4244;Parent=Msa0836180-mRNA-1
chr5_4 exon 9659894 9660036 9659894 ID=Msa0836180-mRNA-1:exon:4245;Parent=Msa0836180-mRNA-1
chr5_4 five_prime_UTR 9653325 9653707 9653325 ID=Msa0836180-mRNA-1:five_prime_utr;Parent=Msa0836180-mRNA-1
chr5_4 five_prime_UTR 9653830 9654337 9653830 ID=Msa0836180-mRNA-1:five_prime_utr;Parent=Msa0836180-mRNA-1
chr5_4 five_prime_UTR 9654560 9654988 9654560 ID=Msa0836180-mRNA-1:five_prime_utr;Parent=Msa0836180-mRNA-1
chr5_4 five_prime_UTR 9655050 9655581 9655050 ID=Msa0836180-mRNA-1:five_prime_utr;Parent=Msa0836180-mRNA-1
chr5_4 five_prime_UTR 9655745 9656114 9655745 ID=Msa0836180-mRNA-1:five_prime_utr;Parent=Msa0836180-mRNA-1
chr5_4 five_prime_UTR 9656556 9656684 9656556 ID=Msa0836180-mRNA-1:five_prime_utr;Parent=Msa0836180-mRNA-1
chr5_4 five_prime_UTR 9656821 9657093 9656821 ID=Msa0836180-mRNA-1:five_prime_utr;Parent=Msa0836180-mRNA-1
chr5_4 five_prime_UTR 9657298 9657426 9657298 ID=Msa0836180-mRNA-1:five_prime_utr;Parent=Msa0836180-mRNA-1
chr5_4 five_prime_UTR 9657560 9657761 9657560 ID=Msa0836180-mRNA-1:five_prime_utr;Parent=Msa0836180-mRNA-1
chr5_4 five_prime_UTR 9657868 9658013 9657868 ID=Msa0836180-mRNA-1:five_prime_utr;Parent=Msa0836180-mRNA-1
chr5_4 five_prime_UTR 9658101 9658389 9658101 ID=Msa0836180-mRNA-1:five_prime_utr;Parent=Msa0836180-mRNA-1
chr5_4 five_prime_UTR 9658549 9658688 9658549 ID=Msa0836180-mRNA-1:five_prime_utr;Parent=Msa0836180-mRNA-1
chr5_4 five_prime_UTR 9658780 9658837 9658780 ID=Msa0836180-mRNA-1:five_prime_utr;Parent=Msa0836180-mRNA-1
chr5_4 five_prime_UTR 9658920 9659185 9658920 ID=Msa0836180-mRNA-1:five_prime_utr;Parent=Msa0836180-mRNA-1
chr5_4 CDS 9659274 9659506 9659274 ID=Msa0836180-mRNA-1:cds;Parent=Msa0836180-mRNA-1
chr5_4 CDS 9659677 9659773 9659677 ID=Msa0836180-mRNA-1:cds;Parent=Msa0836180-mRNA-1
chr5_4 three_prime_UTR 9659774 9659872 9659774 ID=Msa0836180-mRNA-1:three_prime_utr;Parent=Msa0836180-mRNA-1
chr5_4 three_prime_UTR 9659894 9660036 9659894 ID=Msa0836180-mRNA-1:three_prime_utr;Parent=Msa0836180-mRNA-1
Gene Sequence

>Msa0836180

ATGGTGAAACTGCTGAACGTTTTGAAGCATGCATCTCAATGCCGCCGCCGGGCAAGTAATGCTGAGCCATGCTCTCATCCAAACTGTTCTCAAATCAAGAAGTTGTTCTATCATGCCAGTAAGTGCAAAATTCGATTAAATGAGGGCTGCCAGCATTGTAAAAAGATATGGTTTATACTAACTTCTCACTCCAGGAATTGCAAAGACTCGGAATGTAGAATACCACGCTGCAGTGATATGAAGAACCATGTAGAACAGAAATCAGTGCATTCTGAATCTTGCCGTAGAGCTGAAGTTTTGGAAAGCGATGGAGCAATCGTTGGCCAATGA
Protein sequence

>Msa0836180

MVKLLNVLKHASQCRRRASNAEPCSHPNCSQIKKLFYHASKCKIRLNEGCQHCKKIWFILTSHSRNCKDSECRIPRCSDMKNHVEQKSVHSESCRRAEVLESDGAIVGQ*