Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0353100 | XP_013459167.1 | 96.712 | 365 | 12 | 0 | 1 | 365 | 1 | 365 | 0.0 | 720 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0353100 | A0A072V4V0 | 96.712 | 365 | 12 | 0 | 1 | 365 | 1 | 365 | 0.0 | 720 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0353100 | Msa0714520 | 0.807089 | 5.994228e-50 | -8.615850e-47 |
| Msa0353100 | Msa0716480 | 0.819302 | 1.247543e-52 | -8.615850e-47 |
| Msa0353100 | Msa0780910 | 0.818562 | 1.837619e-52 | -8.615850e-47 |
| Msa0353100 | Msa0821160 | 0.815868 | 7.414631e-52 | -8.615850e-47 |
| Msa0353100 | Msa0837460 | 0.817032 | 4.069555e-52 | -8.615850e-47 |
| Msa0353100 | Msa1002640 | 0.800845 | 1.190306e-48 | -8.615850e-47 |
| Msa0353100 | Msa1078970 | 0.800335 | 1.512480e-48 | -8.615850e-47 |
| Msa0353100 | Msa1213830 | 0.808346 | 3.240061e-50 | -8.615850e-47 |
| Msa0353100 | Msa1214350 | 0.804881 | 1.746042e-49 | -8.615850e-47 |
| Msa0353100 | Msa1254540 | 0.801120 | 1.045838e-48 | -8.615850e-47 |
| Msa0353100 | Msa1263780 | 0.824228 | 9.045181e-54 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0353100 | MtrunA17_Chr3g0088311 | 96.438 | 365 | 12 | 1 | 1 | 365 | 1 | 364 | 0.0 | 714 |
| Msa0353100 | MtrunA17_Chr7g0257991 | 34.559 | 272 | 134 | 8 | 1 | 246 | 1 | 254 | 3.52e-28 | 110 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0353100 | AT3G52110.2 | 43.700 | 373 | 156 | 14 | 1 | 361 | 1 | 331 | 2.99e-71 | 226 |
| Msa0353100 | AT3G52110.1 | 40.648 | 401 | 156 | 14 | 1 | 361 | 1 | 359 | 1.63e-67 | 217 |
| Msa0353100 | AT3G52110.3 | 42.560 | 336 | 124 | 10 | 1 | 297 | 1 | 306 | 1.54e-61 | 201 |
| Msa0353100 | AT3G52110.4 | 44.828 | 290 | 120 | 9 | 1 | 280 | 1 | 260 | 1.21e-57 | 188 |
Find 85 sgRNAs with CRISPR-Local
Find 214 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAGAAAATCCTCTGCTGTTT+TGG | 0.155399 | 3_1:+22900313 | None:intergenic |
| TGAAAACCAAAATCCGAATT+TGG | 0.214237 | 3_1:-22899666 | Msa0353100:CDS |
| TTGGAGGGGATGTGTGTTAA+AGG | 0.219732 | 3_1:-22899281 | Msa0353100:CDS |
| GAGTAACCAAATTCGGATTT+TGG | 0.233277 | 3_1:+22899660 | None:intergenic |
| GATACAAGTACCTTCTAATT+TGG | 0.250372 | 3_1:+22899870 | None:intergenic |
| TGACTTGATCAAAGCCTTCT+TGG | 0.260330 | 3_1:+22899625 | None:intergenic |
| GATTCTCATTGAAATTAAAC+TGG | 0.271733 | 3_1:-22897858 | Msa0353100:three_prime_UTR |
| TGAATCTGAATTTATCATCT+TGG | 0.294904 | 3_1:+22899699 | None:intergenic |
| CAAAAGCCTTGGACATGTTC+TGG | 0.319084 | 3_1:-22897912 | Msa0353100:CDS |
| CAGATCACCAAGTCCTTTCA+AGG | 0.337664 | 3_1:-22900291 | Msa0353100:intron |
| AATTGAGGAGTAACCAAATT+CGG | 0.341390 | 3_1:+22899653 | None:intergenic |
| GAATCTGAATTTATCATCTT+GGG | 0.347711 | 3_1:+22899700 | None:intergenic |
| TCTTCTTCTTTACCCTCTAC+AGG | 0.352895 | 3_1:+22899410 | None:intergenic |
| TTCTCCAAGTCAAGAGTTAT+AGG | 0.377448 | 3_1:+22898608 | None:intergenic |
| GTTTCAGATTCTTATATCAT+TGG | 0.380433 | 3_1:+22897710 | None:intergenic |
| AAGGAAACCACTGCTTGAAA+TGG | 0.384635 | 3_1:-22899318 | Msa0353100:CDS |
| AGCTTCATCATCATTGTTGT+TGG | 0.398451 | 3_1:+22900734 | None:intergenic |
| CTTCTCTCCGGTGTGATCAA+TGG | 0.429430 | 3_1:-22900868 | Msa0353100:exon |
| AGGTTCCAGATCCCGGCTAA+TGG | 0.435543 | 3_1:-22898486 | Msa0353100:intron |
| TCTGTGATTTGATTCAGAAT+AGG | 0.438456 | 3_1:+22899500 | None:intergenic |
| ACATACCATTAGCCGGGATC+TGG | 0.445431 | 3_1:+22898481 | None:intergenic |
| TGGATAGAAGAGAGAAAGAA+AGG | 0.449130 | 3_1:-22899337 | Msa0353100:CDS |
| GAAAGAGTTGATTTCAATGA+AGG | 0.452159 | 3_1:+22899548 | None:intergenic |
| TTGAAAACCTTGAAAGGACT+TGG | 0.458556 | 3_1:+22900284 | None:intergenic |
| CTATTTATATATTGTACTCA+TGG | 0.462884 | 3_1:-22897785 | Msa0353100:three_prime_UTR |
| TGGAGGGGATGTGTGTTAAA+GGG | 0.467012 | 3_1:-22899280 | Msa0353100:CDS |
| CATGCCTATAACTCTTGACT+TGG | 0.473248 | 3_1:-22898612 | Msa0353100:CDS |
| AACTCTGCCAAAGCGTTCAC+TGG | 0.473825 | 3_1:+22899359 | None:intergenic |
| GCCTTCTTGGACTTAAATTG+AGG | 0.474331 | 3_1:+22899638 | None:intergenic |
| AATGGGTAAGGCTGAAAGGT+TGG | 0.476335 | 3_1:-22899300 | Msa0353100:CDS |
| AGACAAGAAGTCAACAAACT+TGG | 0.476808 | 3_1:+22900770 | None:intergenic |
| CTCCCTCTCTCTCTTCTCTC+CGG | 0.482043 | 3_1:-22900880 | Msa0353100:five_prime_UTR |
| CCTCAAAAGGTTCCAGATCC+CGG | 0.489613 | 3_1:-22898493 | Msa0353100:CDS |
| AGGAAACCACTGCTTGAAAT+GGG | 0.490444 | 3_1:-22899317 | Msa0353100:CDS |
| TCCTCAATTTAAGTCCAAGA+AGG | 0.490589 | 3_1:-22899639 | Msa0353100:CDS |
| GAGATGGGAAAATCAAAAGA+AGG | 0.491493 | 3_1:-22899748 | Msa0353100:CDS |
| AGAAAATTTGAACCCTGTAG+AGG | 0.494530 | 3_1:-22899423 | Msa0353100:CDS |
| CAAGTGGTGACCAAATTAGA+AGG | 0.496358 | 3_1:-22899880 | Msa0353100:intron |
| CTGCAATGAATTAAAGAGAC+TGG | 0.497634 | 3_1:-22899474 | Msa0353100:CDS |
| AGTGAACGCTTTGGCAGAGT+TGG | 0.497821 | 3_1:-22899357 | Msa0353100:CDS |
| CTTCTAATTTGGTCACCACT+TGG | 0.502583 | 3_1:+22899881 | None:intergenic |
| GCCTTACCCATTTCAAGCAG+TGG | 0.503957 | 3_1:+22899311 | None:intergenic |
| CTTCTTCTTTACCCTCTACA+GGG | 0.509031 | 3_1:+22899411 | None:intergenic |
| CGGAGAGAAGAGAGAGAGGG+AGG | 0.517744 | 3_1:+22900881 | None:intergenic |
| TGGAACCCGCGAAAATCGAT+TGG | 0.518768 | 3_1:-22900848 | Msa0353100:CDS |
| CAAGAATTGAAAACCTTGAA+AGG | 0.521962 | 3_1:+22900278 | None:intergenic |
| TTGGGGAGAAGATGATGAAA+GGG | 0.527318 | 3_1:+22899718 | None:intergenic |
| TGGAAGAGAAACAAAAGCCT+TGG | 0.531913 | 3_1:-22897923 | Msa0353100:CDS |
| ACCACTGCTTGAAATGGGTA+AGG | 0.533049 | 3_1:-22899312 | Msa0353100:CDS |
| GGGTAAGGCTGAAAGGTTGG+AGG | 0.534211 | 3_1:-22899297 | Msa0353100:CDS |
| TGCCAAAGCGTTCACTGGCG+TGG | 0.534995 | 3_1:+22899364 | None:intergenic |
| GACCACGCCAGTGAACGCTT+TGG | 0.541950 | 3_1:-22899366 | Msa0353100:CDS |
| AATAACCCTAACCCCTCAAA+AGG | 0.543271 | 3_1:-22898506 | Msa0353100:CDS |
| ACAACAATGATGATGAAGCT+TGG | 0.550311 | 3_1:-22900731 | Msa0353100:CDS |
| GGTTAGGACATACCATTAGC+CGG | 0.552393 | 3_1:+22898474 | None:intergenic |
| CTTGGGGAGAAGATGATGAA+AGG | 0.552832 | 3_1:+22899717 | None:intergenic |
| AATCTGAATTTATCATCTTG+GGG | 0.559370 | 3_1:+22899701 | None:intergenic |
| GGAGAATGTAAGACAAAAGA+GGG | 0.568087 | 3_1:-22898591 | Msa0353100:CDS |
| GAAAATTTGAACCCTGTAGA+GGG | 0.569739 | 3_1:-22899422 | Msa0353100:CDS |
| TGGAGAATGTAAGACAAAAG+AGG | 0.571613 | 3_1:-22898592 | Msa0353100:CDS |
| CAGCTTGATAATGTTGTGCA+AGG | 0.574727 | 3_1:+22897880 | None:intergenic |
| GTTAGGACATACCATTAGCC+GGG | 0.576783 | 3_1:+22898475 | None:intergenic |
| GACAAGAAGTCAACAAACTT+GGG | 0.580519 | 3_1:+22900771 | None:intergenic |
| ACACCGGAGAGAAGAGAGAG+AGG | 0.584521 | 3_1:+22900877 | None:intergenic |
| TGTAGAGGGTAAAGAAGAAG+AGG | 0.585762 | 3_1:-22899408 | Msa0353100:CDS |
| TTATCTGAAAATCTTCCAAG+TGG | 0.591277 | 3_1:-22899896 | Msa0353100:CDS |
| TTGAAATGGGTAAGGCTGAA+AGG | 0.599337 | 3_1:-22899304 | Msa0353100:CDS |
| AGATGGGAAAATCAAAAGAA+GGG | 0.599458 | 3_1:-22899747 | Msa0353100:CDS |
| GGAGAGAAGAGAGAGAGGGA+GGG | 0.601465 | 3_1:+22900882 | None:intergenic |
| TGACACATTGCAAGACAGTA+CGG | 0.601863 | 3_1:-22899576 | Msa0353100:CDS |
| CAACAAACTTGGGTGCGTTG+AGG | 0.603580 | 3_1:+22900781 | None:intergenic |
| GGTAAGGCTGAAAGGTTGGA+GGG | 0.606044 | 3_1:-22899296 | Msa0353100:CDS |
| ATTCTCATTGAAATTAAACT+GGG | 0.610494 | 3_1:-22897857 | Msa0353100:three_prime_UTR |
| GCAAAACAAGGAAGTTGCAA+AGG | 0.614584 | 3_1:-22897986 | Msa0353100:CDS |
| CACCGGAGAGAAGAGAGAGA+GGG | 0.617834 | 3_1:+22900878 | None:intergenic |
| AGGGTTATCATGCAGGAGAG+AGG | 0.624181 | 3_1:-22898027 | Msa0353100:intron |
| GTAAGGCTGAAAGGTTGGAG+GGG | 0.641584 | 3_1:-22899295 | Msa0353100:CDS |
| TGGGGAGAAGATGATGAAAG+GGG | 0.644916 | 3_1:+22899719 | None:intergenic |
| TAAAGAAGTTGAGCAAAACA+AGG | 0.647922 | 3_1:-22897998 | Msa0353100:CDS |
| GAAGAACCAGAACATGTCCA+AGG | 0.652026 | 3_1:+22897906 | None:intergenic |
| CAATCACCCCAAAACAGCAG+AGG | 0.670196 | 3_1:-22900321 | Msa0353100:CDS |
| GCGGGTTCCATTGATCACAC+CGG | 0.670203 | 3_1:+22900861 | None:intergenic |
| TTGTGTAGTGAAGACTGTGA+AGG | 0.670213 | 3_1:+22900971 | None:intergenic |
| GGAGAAGATGATGAAAGGGG+TGG | 0.706516 | 3_1:+22899722 | None:intergenic |
| CACATTGCAAGACAGTACGG+AGG | 0.751329 | 3_1:-22899573 | Msa0353100:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATATTTATAAAATTTTAGCT+AGG | - | chr3_1:22900383-22900402 | Msa0353100:intron | 10.0% |
| !!! | AAGTTTTGATTTTTCTTAAT+TGG | - | chr3_1:22898210-22898229 | Msa0353100:intron | 15.0% |
| !!! | AGTTTTGATTTTTCTTAATT+GGG | - | chr3_1:22898211-22898230 | Msa0353100:intron | 15.0% |
| !!! | ATAGTTTGGATTTTAATTAA+TGG | - | chr3_1:22898240-22898259 | Msa0353100:intron | 15.0% |
| !!! | TAGTTTGGATTTTAATTAAT+GGG | - | chr3_1:22898241-22898260 | Msa0353100:intron | 15.0% |
| !! | ATGATTAACAAAATTAGAAA+TGG | + | chr3_1:22898379-22898398 | None:intergenic | 15.0% |
| !!! | CTTTCTATTAATTTTTGTTT+TGG | - | chr3_1:22898675-22898694 | Msa0353100:intron | 15.0% |
| !!! | AGATTTTCAGATAAATAAAA+TGG | + | chr3_1:22898728-22898747 | None:intergenic | 15.0% |
| !! | GATTAAACTATTCATATTTA+TGG | - | chr3_1:22900190-22900209 | Msa0353100:intron | 15.0% |
| !!! | ACAATTTATTGACAAATTTT+AGG | + | chr3_1:22900970-22900989 | None:intergenic | 15.0% |
| !!! | AATTTTGCATTTTTCTCAAT+TGG | - | chr3_1:22897961-22897980 | Msa0353100:CDS | 20.0% |
| !!! | ATTTTGCATTTTTCTCAATT+GGG | - | chr3_1:22897962-22897981 | Msa0353100:CDS | 20.0% |
| !!! | AAAGTTTGGATTTTTAGTAA+TGG | - | chr3_1:22898043-22898062 | Msa0353100:intron | 20.0% |
| !!! | AAGTTTGGATTTTTAGTAAT+GGG | - | chr3_1:22898044-22898063 | Msa0353100:intron | 20.0% |
| !!! | AAAGTTTGGATTTTTATTAG+TGG | - | chr3_1:22898126-22898145 | Msa0353100:intron | 20.0% |
| !!! | AAGTTTGGATTTTTATTAGT+GGG | - | chr3_1:22898127-22898146 | Msa0353100:intron | 20.0% |
| !!! | CTTAGTTATTTTATAGCTTA+TGG | - | chr3_1:22898507-22898526 | Msa0353100:CDS | 20.0% |
| !! | TTTAATATTGCTATAGAGAT+GGG | - | chr3_1:22898867-22898886 | Msa0353100:intron | 20.0% |
| !!! | GAATAACTTGTACAAATTAT+TGG | - | chr3_1:22899791-22899810 | Msa0353100:intron | 20.0% |
| !!! | TTATCTTTTTATAACTTCAG+TGG | - | chr3_1:22899819-22899838 | Msa0353100:intron | 20.0% |
| !! | TATACAAAAATGATTAACCA+AGG | + | chr3_1:22899960-22899979 | None:intergenic | 20.0% |
| !! | AAACTATTTAATGTGTCAAT+TGG | - | chr3_1:22900414-22900433 | Msa0353100:intron | 20.0% |
| !!! | GCATTTTAGAAGATTATAAA+GGG | + | chr3_1:22900536-22900555 | None:intergenic | 20.0% |
| !!! | TGCATTTTAGAAGATTATAA+AGG | + | chr3_1:22900537-22900556 | None:intergenic | 20.0% |
| !! | AAAAATATTACAATCTCTGA+TGG | - | chr3_1:22900687-22900706 | Msa0353100:intron | 20.0% |
| !! | ATTCTCATTGAAATTAAACT+GGG | - | chr3_1:22900773-22900792 | Msa0353100:CDS | 20.0% |
| !! | CTATTTATATATTGTACTCA+TGG | - | chr3_1:22900845-22900864 | Msa0353100:CDS | 20.0% |
| !! | AGACTGTATTTTTCTCAATT+TGG | - | chr3_1:22898014-22898033 | Msa0353100:CDS | 25.0% |
| !!! | CAATTTGGTTTGTTAAAGTT+TGG | - | chr3_1:22898029-22898048 | Msa0353100:intron | 25.0% |
| !! | TTGATTGCATTTTTCACAAT+TGG | - | chr3_1:22898096-22898115 | Msa0353100:intron | 25.0% |
| !! | TGATTGCATTTTTCACAATT+GGG | - | chr3_1:22898097-22898116 | Msa0353100:intron | 25.0% |
| !! | TTGATTGCATTTTTCACAAT+TGG | - | chr3_1:22898096-22898115 | Msa0353100:intron | 25.0% |
| !! | TGATTGCATTTTTCACAATT+GGG | - | chr3_1:22898097-22898116 | Msa0353100:intron | 25.0% |
| !!! | TAATTGGGTTTGTTATAGTT+TGG | - | chr3_1:22898226-22898245 | Msa0353100:intron | 25.0% |
| ! | ATAGTTTGAGCTTCTAATTA+TGG | - | chr3_1:22898397-22898416 | Msa0353100:intron | 25.0% |
| !! | AATTATGGTGTTAATTTAGC+TGG | - | chr3_1:22898412-22898431 | Msa0353100:intron | 25.0% |
| !!! | ATAGTTCTGAGCTTTATTTA+TGG | - | chr3_1:22898478-22898497 | Msa0353100:intron | 25.0% |
| !!! | TTGGTTTTTTCCTTTTTTGA+AGG | - | chr3_1:22898694-22898713 | Msa0353100:intron | 25.0% |
| ! | GTTTAATATTGCTATAGAGA+TGG | - | chr3_1:22898866-22898885 | Msa0353100:intron | 25.0% |
| ! | AATCTGAATTTATCATCTTG+GGG | + | chr3_1:22898932-22898951 | None:intergenic | 25.0% |
| ! | GAATCTGAATTTATCATCTT+GGG | + | chr3_1:22898933-22898952 | None:intergenic | 25.0% |
| ! | TGAATCTGAATTTATCATCT+TGG | + | chr3_1:22898934-22898953 | None:intergenic | 25.0% |
| ! | AGGGAAACATTACATATATT+CGG | - | chr3_1:22899763-22899782 | Msa0353100:intron | 25.0% |
| ! | TAGTTTAATCTTATAGCCAT+AGG | + | chr3_1:22900180-22900199 | None:intergenic | 25.0% |
| !! | ATGGATTATTTACAAGACAA+TGG | - | chr3_1:22900209-22900228 | Msa0353100:intron | 25.0% |
| !!! | ATATTTTTGTTGTTTTGTGC+TGG | + | chr3_1:22900675-22900694 | None:intergenic | 25.0% |
| ! | GATTCTCATTGAAATTAAAC+TGG | - | chr3_1:22900772-22900791 | Msa0353100:CDS | 25.0% |
| ! | GTTTCAGATTCTTATATCAT+TGG | + | chr3_1:22900923-22900942 | None:intergenic | 25.0% |
| !! | ATTTTTCCAATCGATTTTCG+CGG | + | chr3_1:22897791-22897810 | None:intergenic | 30.0% |
| TCGATTGGAAAAATCTAGAA+TGG | - | chr3_1:22897797-22897816 | Msa0353100:three_prime_UTR | 30.0% | |
| !! | CAATTGGGTTTGTTAAAGTT+TGG | - | chr3_1:22898112-22898131 | Msa0353100:intron | 30.0% |
| CAAGAATTGAAAACCTTGAA+AGG | + | chr3_1:22898355-22898374 | None:intergenic | 30.0% | |
| TTATCTGAAAATCTTCCAAG+TGG | - | chr3_1:22898734-22898753 | Msa0353100:intron | 30.0% | |
| GATACAAGTACCTTCTAATT+TGG | + | chr3_1:22898763-22898782 | None:intergenic | 30.0% | |
| TCTCAAATTCCTATGGAAAA+AGG | + | chr3_1:22898808-22898827 | None:intergenic | 30.0% | |
| AGCAAAATCTCAAATTCCTA+TGG | + | chr3_1:22898815-22898834 | None:intergenic | 30.0% | |
| AGATGGGAAAATCAAAAGAA+GGG | - | chr3_1:22898883-22898902 | Msa0353100:intron | 30.0% | |
| TGAAAACCAAAATCCGAATT+TGG | - | chr3_1:22898964-22898983 | Msa0353100:intron | 30.0% | |
| AATTGAGGAGTAACCAAATT+CGG | + | chr3_1:22898980-22898999 | None:intergenic | 30.0% | |
| ! | GAAAGAGTTGATTTCAATGA+AGG | + | chr3_1:22899085-22899104 | None:intergenic | 30.0% |
| !! | CAAAGAATTTGTTTTCGAGA+CGG | - | chr3_1:22899107-22899126 | Msa0353100:intron | 30.0% |
| TCTGTGATTTGATTCAGAAT+AGG | + | chr3_1:22899133-22899152 | None:intergenic | 30.0% | |
| CAAGGAAATAGTACAAGAAT+TGG | + | chr3_1:22899942-22899961 | None:intergenic | 30.0% | |
| CAATTCTTGTACTATTTCCT+TGG | - | chr3_1:22899940-22899959 | Msa0353100:intron | 30.0% | |
| TAATCTTATAGCCATAGGTT+AGG | + | chr3_1:22900175-22900194 | None:intergenic | 30.0% | |
| ATCCATCAATGAATCTCTTT+AGG | + | chr3_1:22900288-22900307 | None:intergenic | 30.0% | |
| GATTTCATGAACTGACATTA+AGG | - | chr3_1:22900305-22900324 | Msa0353100:CDS | 30.0% | |
| TTTAATGTGTCAATTGGAAG+AGG | - | chr3_1:22900420-22900439 | Msa0353100:intron | 30.0% | |
| TTTAATGTGTCAATTGGAAG+AGG | - | chr3_1:22900420-22900439 | Msa0353100:intron | 30.0% | |
| ! | CATTACTACTTCTCTAAAGA+GGG | + | chr3_1:22900560-22900579 | None:intergenic | 30.0% |
| TAAAGAAGTTGAGCAAAACA+AGG | - | chr3_1:22900632-22900651 | Msa0353100:intron | 30.0% | |
| !!! | GGAGCAAAACTGTTTTATTT+AGG | - | chr3_1:22900866-22900885 | Msa0353100:exon | 30.0% |
| !!! | ACAAATTTTAGGTTCAGTAC+AGG | + | chr3_1:22900959-22900978 | None:intergenic | 30.0% |
| !! | TTTTTCCAATCGATTTTCGC+GGG | + | chr3_1:22897790-22897809 | None:intergenic | 35.0% |
| GACAAGAAGTCAACAAACTT+GGG | + | chr3_1:22897862-22897881 | None:intergenic | 35.0% | |
| AGACAAGAAGTCAACAAACT+TGG | + | chr3_1:22897863-22897882 | None:intergenic | 35.0% | |
| AGCTTCATCATCATTGTTGT+TGG | + | chr3_1:22897899-22897918 | None:intergenic | 35.0% | |
| ! | ACAACAATGATGATGAAGCT+TGG | - | chr3_1:22897899-22897918 | Msa0353100:CDS | 35.0% |
| !!! | AGAAAATCCTCTGCTGTTTT+GGG | + | chr3_1:22898319-22898338 | None:intergenic | 35.0% |
| TTGAAAACCTTGAAAGGACT+TGG | + | chr3_1:22898349-22898368 | None:intergenic | 35.0% | |
| ! | CTTTATTTCCCCAATTTAGC+TGG | - | chr3_1:22898450-22898469 | Msa0353100:intron | 35.0% |
| TATGAACACCAGCTAAATTG+GGG | + | chr3_1:22898461-22898480 | None:intergenic | 35.0% | |
| CTATGAACACCAGCTAAATT+GGG | + | chr3_1:22898462-22898481 | None:intergenic | 35.0% | |
| ACTATGAACACCAGCTAAAT+TGG | + | chr3_1:22898463-22898482 | None:intergenic | 35.0% | |
| GAGAAAGCAACATAGAGAAA+GGG | + | chr3_1:22898600-22898619 | None:intergenic | 35.0% | |
| AGAGAAAGCAACATAGAGAA+AGG | + | chr3_1:22898601-22898620 | None:intergenic | 35.0% | |
| ! | ACACACTTTCCTTTTTCCAT+AGG | - | chr3_1:22898796-22898815 | Msa0353100:intron | 35.0% |
| GAGATGGGAAAATCAAAAGA+AGG | - | chr3_1:22898882-22898901 | Msa0353100:intron | 35.0% | |
| ! | GAGTAACCAAATTCGGATTT+TGG | + | chr3_1:22898973-22898992 | None:intergenic | 35.0% |
| TCCTCAATTTAAGTCCAAGA+AGG | - | chr3_1:22898991-22899010 | Msa0353100:intron | 35.0% | |
| CTGCAATGAATTAAAGAGAC+TGG | - | chr3_1:22899156-22899175 | Msa0353100:intron | 35.0% | |
| AGAAAATTTGAACCCTGTAG+AGG | - | chr3_1:22899207-22899226 | Msa0353100:intron | 35.0% | |
| GAAAATTTGAACCCTGTAGA+GGG | - | chr3_1:22899208-22899227 | Msa0353100:intron | 35.0% | |
| TGGATAGAAGAGAGAAAGAA+AGG | - | chr3_1:22899293-22899312 | Msa0353100:CDS | 35.0% | |
| TTTACGATCCAAATCGATGT+AGG | - | chr3_1:22899508-22899527 | Msa0353100:CDS | 35.0% | |
| ACATTGTCAAACCAAAGTGT+CGG | + | chr3_1:22899579-22899598 | None:intergenic | 35.0% | |
| TTGGAAACGACACTTAAACT+GGG | + | chr3_1:22899668-22899687 | None:intergenic | 35.0% | |
| ATTGGAAACGACACTTAAAC+TGG | + | chr3_1:22899669-22899688 | None:intergenic | 35.0% | |
| ATAAAACACTGACACTGGTA+TGG | + | chr3_1:22899694-22899713 | None:intergenic | 35.0% | |
| ! | TACCAGTGTCAGTGTTTTAT+AGG | - | chr3_1:22899694-22899713 | Msa0353100:CDS | 35.0% |
| AACCTATAAAACACTGACAC+TGG | + | chr3_1:22899699-22899718 | None:intergenic | 35.0% | |
| ! | CAGTGTTTTATAGGTTGCTA+AGG | - | chr3_1:22899703-22899722 | Msa0353100:CDS | 35.0% |
| ! | GTTTTATAGGTTGCTAAGGT+AGG | - | chr3_1:22899707-22899726 | Msa0353100:CDS | 35.0% |
| AGTTGGATGGGAAATTTGAA+AGG | - | chr3_1:22899743-22899762 | Msa0353100:CDS | 35.0% | |
| GTTGGATGGGAAATTTGAAA+GGG | - | chr3_1:22899744-22899763 | Msa0353100:CDS | 35.0% | |
| ! | AGTACAAGAATTGGAGTACT+GGG | + | chr3_1:22899933-22899952 | None:intergenic | 35.0% |
| TAGTACAAGAATTGGAGTAC+TGG | + | chr3_1:22899934-22899953 | None:intergenic | 35.0% | |
| TTCTCCAAGTCAAGAGTTAT+AGG | + | chr3_1:22900025-22900044 | None:intergenic | 35.0% | |
| TGGAGAATGTAAGACAAAAG+AGG | - | chr3_1:22900038-22900057 | Msa0353100:intron | 35.0% | |
| GGAGAATGTAAGACAAAAGA+GGG | - | chr3_1:22900039-22900058 | Msa0353100:intron | 35.0% | |
| TAATGGTATGTCCTAACCTA+TGG | - | chr3_1:22900161-22900180 | Msa0353100:intron | 35.0% | |
| AGCCTAAAGAGATTCATTGA+TGG | - | chr3_1:22900283-22900302 | Msa0353100:intron | 35.0% | |
| TCTGATAGACCCCTTAATAT+GGG | + | chr3_1:22900338-22900357 | None:intergenic | 35.0% | |
| TTCTGATAGACCCCTTAATA+TGG | + | chr3_1:22900339-22900358 | None:intergenic | 35.0% | |
| ACCACGTTTAATGTGTCAAT+TGG | - | chr3_1:22900455-22900474 | Msa0353100:intron | 35.0% | |
| TCCAATTGACACATTAAACG+TGG | + | chr3_1:22900459-22900478 | None:intergenic | 35.0% | |
| ! | CCATTACTACTTCTCTAAAG+AGG | + | chr3_1:22900561-22900580 | None:intergenic | 35.0% |
| ! | CCTCTTTAGAGAAGTAGTAA+TGG | - | chr3_1:22900558-22900577 | Msa0353100:intron | 35.0% |
| ! | TGAAAAGAGATCTGATGATG+AGG | - | chr3_1:22900583-22900602 | Msa0353100:intron | 35.0% |
| ! | GAAAAGAGATCTGATGATGA+GGG | - | chr3_1:22900584-22900603 | Msa0353100:intron | 35.0% |
| TTGTGTAGTGAAGACTGTGA+AGG | + | chr3_1:22897662-22897681 | None:intergenic | 40.0% | |
| ! | ACCTGGTCAGTTTTCTCAAT+TGG | - | chr3_1:22897930-22897949 | Msa0353100:CDS | 40.0% |
| ! | CCTGGTCAGTTTTCTCAATT+GGG | - | chr3_1:22897931-22897950 | Msa0353100:CDS | 40.0% |
| !!! | GAAAATCCTCTGCTGTTTTG+GGG | + | chr3_1:22898318-22898337 | None:intergenic | 40.0% |
| !! | GAGAAAATCCTCTGCTGTTT+TGG | + | chr3_1:22898320-22898339 | None:intergenic | 40.0% |
| CTGTTCTCAGCTTCTAACTT+TGG | - | chr3_1:22898619-22898638 | Msa0353100:CDS | 40.0% | |
| GGACTTCTTGCCTTCAAAAA+AGG | + | chr3_1:22898707-22898726 | None:intergenic | 40.0% | |
| CTTCTAATTTGGTCACCACT+TGG | + | chr3_1:22898752-22898771 | None:intergenic | 40.0% | |
| CAAGTGGTGACCAAATTAGA+AGG | - | chr3_1:22898750-22898769 | Msa0353100:intron | 40.0% | |
| TTGGGGAGAAGATGATGAAA+GGG | + | chr3_1:22898915-22898934 | None:intergenic | 40.0% | |
| GCCTTCTTGGACTTAAATTG+AGG | + | chr3_1:22898995-22899014 | None:intergenic | 40.0% | |
| TGACTTGATCAAAGCCTTCT+TGG | + | chr3_1:22899008-22899027 | None:intergenic | 40.0% | |
| TGACACATTGCAAGACAGTA+CGG | - | chr3_1:22899054-22899073 | Msa0353100:intron | 40.0% | |
| CTTCTTCTTTACCCTCTACA+GGG | + | chr3_1:22899222-22899241 | None:intergenic | 40.0% | |
| TCTTCTTCTTTACCCTCTAC+AGG | + | chr3_1:22899223-22899242 | None:intergenic | 40.0% | |
| TGTAGAGGGTAAAGAAGAAG+AGG | - | chr3_1:22899222-22899241 | Msa0353100:intron | 40.0% | |
| AAGGAAACCACTGCTTGAAA+TGG | - | chr3_1:22899312-22899331 | Msa0353100:CDS | 40.0% | |
| AGGAAACCACTGCTTGAAAT+GGG | - | chr3_1:22899313-22899332 | Msa0353100:CDS | 40.0% | |
| TTGAAATGGGTAAGGCTGAA+AGG | - | chr3_1:22899326-22899345 | Msa0353100:CDS | 40.0% | |
| TGGAAACGACACTTAAACTG+GGG | + | chr3_1:22899667-22899686 | None:intergenic | 40.0% | |
| TTGCTAAGGTAGGCAATCTA+GGG | - | chr3_1:22899717-22899736 | Msa0353100:CDS | 40.0% | |
| !! | AATCTAGGGTCAAGTTGGAT+GGG | - | chr3_1:22899731-22899750 | Msa0353100:CDS | 40.0% |
| CATGCCTATAACTCTTGACT+TGG | - | chr3_1:22900018-22900037 | Msa0353100:intron | 40.0% | |
| AATAACCCTAACCCCTCAAA+AGG | - | chr3_1:22900124-22900143 | Msa0353100:intron | 40.0% | |
| AAGGTAGTTGCCCCATATTA+AGG | - | chr3_1:22900324-22900343 | Msa0353100:CDS | 40.0% | |
| AGGTAGTTGCCCCATATTAA+GGG | - | chr3_1:22900325-22900344 | Msa0353100:CDS | 40.0% | |
| CTGATAGACCCCTTAATATG+GGG | + | chr3_1:22900337-22900356 | None:intergenic | 40.0% | |
| GCAAAACAAGGAAGTTGCAA+AGG | - | chr3_1:22900644-22900663 | Msa0353100:intron | 40.0% | |
| TGGAAGAGAAACAAAAGCCT+TGG | - | chr3_1:22900707-22900726 | Msa0353100:intron | 40.0% | |
| !! | CAGCTTGATAATGTTGTGCA+AGG | + | chr3_1:22900753-22900772 | None:intergenic | 40.0% |
| !!! | GAAGCTTGGTTTTGCAAACC+TGG | - | chr3_1:22897913-22897932 | Msa0353100:CDS | 45.0% |
| CCCAATTGAGAAAACTGACC+AGG | + | chr3_1:22897934-22897953 | None:intergenic | 45.0% | |
| CAGATCACCAAGTCCTTTCA+AGG | - | chr3_1:22898339-22898358 | Msa0353100:intron | 45.0% | |
| TGGGGAGAAGATGATGAAAG+GGG | + | chr3_1:22898914-22898933 | None:intergenic | 45.0% | |
| CTTGGGGAGAAGATGATGAA+AGG | + | chr3_1:22898916-22898935 | None:intergenic | 45.0% | |
| ACCACTGCTTGAAATGGGTA+AGG | - | chr3_1:22899318-22899337 | Msa0353100:CDS | 45.0% | |
| AATGGGTAAGGCTGAAAGGT+TGG | - | chr3_1:22899330-22899349 | Msa0353100:CDS | 45.0% | |
| TTGGAGGGGATGTGTGTTAA+AGG | - | chr3_1:22899349-22899368 | Msa0353100:CDS | 45.0% | |
| TGGAGGGGATGTGTGTTAAA+GGG | - | chr3_1:22899350-22899369 | Msa0353100:CDS | 45.0% | |
| ! | CCATACGTCCTACATCGATT+TGG | + | chr3_1:22899519-22899538 | None:intergenic | 45.0% |
| CCAAATCGATGTAGGACGTA+TGG | - | chr3_1:22899516-22899535 | Msa0353100:CDS | 45.0% | |
| GCTATGTAACACCGACACTT+TGG | - | chr3_1:22899565-22899584 | Msa0353100:CDS | 45.0% | |
| ATGTCTAACACCGACACATG+CGG | - | chr3_1:22899595-22899614 | Msa0353100:CDS | 45.0% | |
| CGACACTTAAACTGGGGTAA+CGG | + | chr3_1:22899661-22899680 | None:intergenic | 45.0% | |
| ACTGACACTGGTATGGACAT+TGG | + | chr3_1:22899687-22899706 | None:intergenic | 45.0% | |
| GTTGCTAAGGTAGGCAATCT+AGG | - | chr3_1:22899716-22899735 | Msa0353100:CDS | 45.0% | |
| ! | TAGGCAATCTAGGGTCAAGT+TGG | - | chr3_1:22899726-22899745 | Msa0353100:CDS | 45.0% |
| !! | CAATCTAGGGTCAAGTTGGA+TGG | - | chr3_1:22899730-22899749 | Msa0353100:CDS | 45.0% |
| ! | GGCATGTTTTCTGCTTCATC+AGG | + | chr3_1:22900004-22900023 | None:intergenic | 45.0% |
| GAAAAACACTGAGGAGAAGG+AGG | + | chr3_1:22900094-22900113 | None:intergenic | 45.0% | |
| GCAGAAAAACACTGAGGAGA+AGG | + | chr3_1:22900097-22900116 | None:intergenic | 45.0% | |
| ! | TCTCCTCAGTGTTTTTCTGC+TGG | - | chr3_1:22900097-22900116 | Msa0353100:intron | 45.0% |
| ! | CTCCTCAGTGTTTTTCTGCT+GGG | - | chr3_1:22900098-22900117 | Msa0353100:intron | 45.0% |
| !! | TGGAACCTTTTGAGGGGTTA+GGG | + | chr3_1:22900132-22900151 | None:intergenic | 45.0% |
| GTTAGGACATACCATTAGCC+GGG | + | chr3_1:22900158-22900177 | None:intergenic | 45.0% | |
| GGTTAGGACATACCATTAGC+CGG | + | chr3_1:22900159-22900178 | None:intergenic | 45.0% | |
| GGTAGTTGCCCCATATTAAG+GGG | - | chr3_1:22900326-22900345 | Msa0353100:CDS | 45.0% | |
| GATGATGAGGGTTATCATGC+AGG | - | chr3_1:22900596-22900615 | Msa0353100:intron | 45.0% | |
| CAAAAGCCTTGGACATGTTC+TGG | - | chr3_1:22900718-22900737 | Msa0353100:CDS | 45.0% | |
| GAAGAACCAGAACATGTCCA+AGG | + | chr3_1:22900727-22900746 | None:intergenic | 45.0% | |
| AGAGAGAGAGAGAGAGAGAG+AGG | + | chr3_1:22897687-22897706 | None:intergenic | 50.0% | |
| CTTCTCTCCGGTGTGATCAA+TGG | - | chr3_1:22897762-22897781 | Msa0353100:three_prime_UTR | 50.0% | |
| TGGAACCCGCGAAAATCGAT+TGG | - | chr3_1:22897782-22897801 | Msa0353100:three_prime_UTR | 50.0% | |
| CAACAAACTTGGGTGCGTTG+AGG | + | chr3_1:22897852-22897871 | None:intergenic | 50.0% | |
| CAATCACCCCAAAACAGCAG+AGG | - | chr3_1:22898309-22898328 | Msa0353100:intron | 50.0% | |
| GGAGAAGATGATGAAAGGGG+TGG | + | chr3_1:22898911-22898930 | None:intergenic | 50.0% | |
| CACATTGCAAGACAGTACGG+AGG | - | chr3_1:22899057-22899076 | Msa0353100:intron | 50.0% | |
| ! | AACTCTGCCAAAGCGTTCAC+TGG | + | chr3_1:22899274-22899293 | None:intergenic | 50.0% |
| AGTGAACGCTTTGGCAGAGT+TGG | - | chr3_1:22899273-22899292 | Msa0353100:CDS | 50.0% | |
| GCCTTACCCATTTCAAGCAG+TGG | + | chr3_1:22899322-22899341 | None:intergenic | 50.0% | |
| GGTAAGGCTGAAAGGTTGGA+GGG | - | chr3_1:22899334-22899353 | Msa0353100:CDS | 50.0% | |
| GTAAGGCTGAAAGGTTGGAG+GGG | - | chr3_1:22899335-22899354 | Msa0353100:CDS | 50.0% | |
| TGTCTAACACCGACACATGC+GGG | - | chr3_1:22899596-22899615 | Msa0353100:CDS | 50.0% | |
| ATGTAACCACCCGCATGTGT+CGG | + | chr3_1:22899608-22899627 | None:intergenic | 50.0% | |
| AGCCCAGCAGAAAAACACTG+AGG | + | chr3_1:22900103-22900122 | None:intergenic | 50.0% | |
| !! | CTGGAACCTTTTGAGGGGTT+AGG | + | chr3_1:22900133-22900152 | None:intergenic | 50.0% |
| !! | GGGATCTGGAACCTTTTGAG+GGG | + | chr3_1:22900138-22900157 | None:intergenic | 50.0% |
| !! | CGGGATCTGGAACCTTTTGA+GGG | + | chr3_1:22900139-22900158 | None:intergenic | 50.0% |
| CCTCAAAAGGTTCCAGATCC+CGG | - | chr3_1:22900137-22900156 | Msa0353100:intron | 50.0% | |
| ACATACCATTAGCCGGGATC+TGG | + | chr3_1:22900152-22900171 | None:intergenic | 50.0% | |
| AGGGTTATCATGCAGGAGAG+AGG | - | chr3_1:22900603-22900622 | Msa0353100:intron | 50.0% | |
| GAGAGAGAGAGAGAGAGAGG+TGG | + | chr3_1:22897686-22897705 | None:intergenic | 55.0% | |
| GGAGAGAAGAGAGAGAGGGA+GGG | + | chr3_1:22897751-22897770 | None:intergenic | 55.0% | |
| CTCCCTCTCTCTCTTCTCTC+CGG | - | chr3_1:22897750-22897769 | Msa0353100:three_prime_UTR | 55.0% | |
| CACCGGAGAGAAGAGAGAGA+GGG | + | chr3_1:22897755-22897774 | None:intergenic | 55.0% | |
| ACACCGGAGAGAAGAGAGAG+AGG | + | chr3_1:22897756-22897775 | None:intergenic | 55.0% | |
| GCGGGTTCCATTGATCACAC+CGG | + | chr3_1:22897772-22897791 | None:intergenic | 55.0% | |
| GGGTAAGGCTGAAAGGTTGG+AGG | - | chr3_1:22899333-22899352 | Msa0353100:CDS | 55.0% | |
| !! | CCGGGATCTGGAACCTTTTG+AGG | + | chr3_1:22900140-22900159 | None:intergenic | 55.0% |
| AGGTTCCAGATCCCGGCTAA+TGG | - | chr3_1:22900144-22900163 | Msa0353100:intron | 55.0% | |
| CGGAGAGAAGAGAGAGAGGG+AGG | + | chr3_1:22897752-22897771 | None:intergenic | 60.0% | |
| GACCACGCCAGTGAACGCTT+TGG | - | chr3_1:22899264-22899283 | Msa0353100:CDS | 60.0% | |
| ! | TGCCAAAGCGTTCACTGGCG+TGG | + | chr3_1:22899269-22899288 | None:intergenic | 60.0% |
| CTAACACCGACACATGCGGG+TGG | - | chr3_1:22899599-22899618 | Msa0353100:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_1 | gene | 22897647 | 22901005 | 22897647 | ID=Msa0353100;Name=Msa0353100 |
| chr3_1 | mRNA | 22897647 | 22901005 | 22897647 | ID=Msa0353100-mRNA-1;Parent=Msa0353100;Name=Msa0353100-mRNA-1;_AED=0.06;_eAED=0.06;_QI=114|1|1|1|0.83|0.71|7|232|365 |
| chr3_1 | exon | 22897647 | 22898034 | 22897647 | ID=Msa0353100-mRNA-1:exon:5172;Parent=Msa0353100-mRNA-1 |
| chr3_1 | exon | 22898487 | 22898655 | 22898487 | ID=Msa0353100-mRNA-1:exon:5171;Parent=Msa0353100-mRNA-1 |
| chr3_1 | exon | 22899263 | 22899769 | 22899263 | ID=Msa0353100-mRNA-1:exon:5170;Parent=Msa0353100-mRNA-1 |
| chr3_1 | exon | 22899881 | 22899936 | 22899881 | ID=Msa0353100-mRNA-1:exon:5169;Parent=Msa0353100-mRNA-1 |
| chr3_1 | exon | 22900292 | 22900347 | 22900292 | ID=Msa0353100-mRNA-1:exon:5168;Parent=Msa0353100-mRNA-1 |
| chr3_1 | exon | 22900718 | 22900945 | 22900718 | ID=Msa0353100-mRNA-1:exon:5167;Parent=Msa0353100-mRNA-1 |
| chr3_1 | exon | 22900966 | 22901005 | 22900966 | ID=Msa0353100-mRNA-1:exon:5166;Parent=Msa0353100-mRNA-1 |
| chr3_1 | five_prime_UTR | 22900966 | 22901005 | 22900966 | ID=Msa0353100-mRNA-1:five_prime_utr;Parent=Msa0353100-mRNA-1 |
| chr3_1 | five_prime_UTR | 22900872 | 22900945 | 22900872 | ID=Msa0353100-mRNA-1:five_prime_utr;Parent=Msa0353100-mRNA-1 |
| chr3_1 | CDS | 22900718 | 22900871 | 22900718 | ID=Msa0353100-mRNA-1:cds;Parent=Msa0353100-mRNA-1 |
| chr3_1 | CDS | 22900292 | 22900347 | 22900292 | ID=Msa0353100-mRNA-1:cds;Parent=Msa0353100-mRNA-1 |
| chr3_1 | CDS | 22899881 | 22899936 | 22899881 | ID=Msa0353100-mRNA-1:cds;Parent=Msa0353100-mRNA-1 |
| chr3_1 | CDS | 22899263 | 22899769 | 22899263 | ID=Msa0353100-mRNA-1:cds;Parent=Msa0353100-mRNA-1 |
| chr3_1 | CDS | 22898487 | 22898655 | 22898487 | ID=Msa0353100-mRNA-1:cds;Parent=Msa0353100-mRNA-1 |
| chr3_1 | CDS | 22897879 | 22898034 | 22897879 | ID=Msa0353100-mRNA-1:cds;Parent=Msa0353100-mRNA-1 |
| chr3_1 | three_prime_UTR | 22897647 | 22897878 | 22897647 | ID=Msa0353100-mRNA-1:three_prime_utr;Parent=Msa0353100-mRNA-1 |
| Gene Sequence |
| Protein sequence |
