AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1213830

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1213830 MtrunA17_Chr4g0062781 94.619 669 30 3 1 666 1 666 0.0 1211
Msa1213830 MtrunA17_Chr6g0475401 58.824 119 49 0 1 119 1 119 8.65e-42 159
Msa1213830 MtrunA17_Chr6g0475401 28.772 285 138 9 409 661 282 533 1.48e-22 102
Msa1213830 MtrunA17_Chr4g0033751 55.000 120 54 0 1 120 1 120 1.54e-39 155
Msa1213830 MtrunA17_Chr4g0033751 26.141 482 221 18 290 655 245 707 4.05e-20 95.1
Msa1213830 MtrunA17_Chr2g0329581 56.198 121 52 1 1 120 1 121 8.87e-39 153
Msa1213830 MtrunA17_Chr5g0413621 48.760 121 61 1 1 120 1 121 5.04e-33 134
Msa1213830 MtrunA17_Chr2g0309091 45.082 122 61 2 1 120 1 118 2.04e-21 99.0
Msa1213830 MtrunA17_Chr6g0475421 32.787 122 66 5 553 661 8 126 2.01e-13 67.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1213830 AT4G13370.1 52.564 702 263 19 1 662 1 672 0.0 625
Msa1213830 AT3G14170.2 53.600 125 58 0 1 125 1 125 2.99e-39 152
Msa1213830 AT3G14170.2 33.058 242 145 8 419 655 270 499 6.68e-21 97.1
Msa1213830 AT3G14170.1 53.600 125 58 0 1 125 1 125 3.30e-39 152
Msa1213830 AT3G14170.1 33.058 242 145 8 419 655 269 498 7.01e-21 97.1
Msa1213830 AT1G08760.1 54.167 120 55 0 1 120 1 120 8.98e-38 150
Msa1213830 AT1G08760.1 26.816 358 177 13 372 653 372 720 3.73e-21 99.0
Msa1213830 AT1G23790.1 48.760 121 61 1 1 120 1 121 2.87e-31 129
Msa1213830 AT1G23790.1 25.758 198 128 3 414 603 290 476 9.69e-12 68.6
Msa1213830 AT1G70340.1 46.667 120 63 1 1 119 1 120 9.59e-29 121
Msa1213830 AT1G70340.1 27.320 194 115 5 415 589 266 452 5.03e-11 66.2
Msa1213830 AT3G19610.1 40.833 120 70 1 1 119 29 148 3.81e-23 104
Msa1213830 AT3G19610.1 26.389 288 170 8 402 656 331 609 6.87e-16 82.0
Msa1213830 AT2G31920.1 39.583 144 68 6 1 126 1 143 3.48e-18 89.0

Find 189 sgRNAs with CRISPR-Local

Find 244 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCATTGCTTGTAGGAGTTTA+AGG 0.150497 8_1:+74044666 None:intergenic
TTTCTGATTTACTTTGACTA+TGG 0.254593 8_1:-74042012 Msa1213830:three_prime_UTR
GCTAGCTTATGAAGTTGATT+AGG 0.264854 8_1:-74041938 Msa1213830:three_prime_UTR
AATCAAAGTCCATCTCTCTT+TGG 0.278109 8_1:-74042511 Msa1213830:CDS
CTCAATAATCGTCTTCAATT+AGG 0.282819 8_1:-74044470 Msa1213830:CDS
CAAATGTGTGGTTCCGAGTT+TGG 0.301462 8_1:-74044024 Msa1213830:CDS
CTTGTAGGAGTTTAAGGATT+AGG 0.303053 8_1:+74044672 None:intergenic
CAGCCAGTGCGATTGATCTT+AGG 0.304082 8_1:+74042576 None:intergenic
CTAGCTTATGAAGTTGATTA+GGG 0.311335 8_1:-74041937 Msa1213830:three_prime_UTR
TCTTTGGGTTGAAGCTGCTT+TGG 0.323248 8_1:-74042495 Msa1213830:CDS
CGAAGACCGCGAGGAAGAAT+TGG 0.326678 8_1:-74043755 Msa1213830:CDS
TTTCACCATCCAACCGTTAT+CGG 0.326796 8_1:-74044309 Msa1213830:CDS
GGAGAAATGGAAGCTCTTCT+AGG 0.336586 8_1:+74043891 None:intergenic
ATCAAAGTCCATCTCTCTTT+GGG 0.337514 8_1:-74042510 Msa1213830:CDS
GAAGCAGGATTTAAAGTGTT+TGG 0.350982 8_1:-74042272 Msa1213830:CDS
AATGTATAATAAGAAATTTA+AGG 0.353960 8_1:-74042894 Msa1213830:intron
CAAACTCGGAACCACACATT+TGG 0.375036 8_1:+74044025 None:intergenic
AAATCCAAGTTTGCAGGTCT+TGG 0.376268 8_1:-74043348 Msa1213830:CDS
CTGTGTCTGGCAAACTTTCA+AGG 0.377282 8_1:-74043272 Msa1213830:CDS
CAATCTTCTCCCCGGAGAAA+TGG 0.380821 8_1:+74043878 None:intergenic
TCACAATCTGCAGGGAAGTT+TGG 0.388321 8_1:-74044116 Msa1213830:CDS
GCCACCAAGACCTGCAAACT+TGG 0.401930 8_1:+74043344 None:intergenic
ATACGAGCTACGAGTGGTTC+CGG 0.406699 8_1:+74044350 None:intergenic
TTCATCTTCCCCGCCGGAGA+TGG 0.407138 8_1:+74044071 None:intergenic
TTACAATTCATGAAAAGAAA+TGG 0.412348 8_1:-74043320 Msa1213830:CDS
TTCTGATATGTTGGCTGGAT+CGG 0.412742 8_1:-74043778 Msa1213830:CDS
GTTCCTCTTGATGCTGTGTC+TGG 0.415818 8_1:-74043285 Msa1213830:CDS
TCTGGCAAACTTTCAAGGCT+TGG 0.416539 8_1:-74043267 Msa1213830:CDS
CTCTTCTCCTCAAAGTTGTT+CGG 0.417974 8_1:-74043379 Msa1213830:CDS
ACACTTTAAATCCTGCTTCA+AGG 0.421734 8_1:+74042276 None:intergenic
AAGATTTCTGATATGTTGGC+TGG 0.422950 8_1:-74043783 Msa1213830:CDS
TTCTAAGATTTCTGATATGT+TGG 0.426049 8_1:-74043787 Msa1213830:CDS
GTGGAGAGGTAGAGTGAAAG+AGG 0.431952 8_1:+74044275 None:intergenic
TAGAAGAGCTTCCATTTCTC+CGG 0.433087 8_1:-74043889 Msa1213830:CDS
TCTACCTCCGAACAACTTTG+AGG 0.436646 8_1:+74043372 None:intergenic
AAGGGGTGGCGCGTGGGGAG+AGG 0.444224 8_1:+74044383 None:intergenic
AGCGATCAACGTAGAGGAAC+TGG 0.452421 8_1:+74044447 None:intergenic
CACTTTAAATCCTGCTTCAA+GGG 0.454714 8_1:+74042277 None:intergenic
TTGAGAATGAGATCGGTGTC+AGG 0.455000 8_1:+74044488 None:intergenic
GAGTGTTGGTTCTAAAACTA+GGG 0.457173 8_1:-74043697 Msa1213830:CDS
CGACGAAGGGGTGGCGCGTG+GGG 0.457884 8_1:+74044378 None:intergenic
AGAGTGTTGGTTCTAAAACT+AGG 0.458292 8_1:-74043698 Msa1213830:CDS
ATGGAAGCTCTTCTAGGATT+CGG 0.459733 8_1:+74043897 None:intergenic
GCGAAGAAGAAGATGGTAGC+TGG 0.461789 8_1:-74043813 Msa1213830:CDS
TCTTAGGACATCATCATAGA+TGG 0.462692 8_1:+74042592 None:intergenic
TGTCGGTGTTCATTGCTTGT+AGG 0.464305 8_1:+74044657 None:intergenic
TTGGACCGCGTGGTTTCTAA+AGG 0.464455 8_1:-74042158 Msa1213830:CDS
ATTTAACCATTGAGTCATCA+TGG 0.467127 8_1:+74041866 None:intergenic
GTAGAGAAATCCAAGTTTGC+AGG 0.469399 8_1:-74043354 Msa1213830:CDS
AAAATAATTCAGGATGAAGC+AGG 0.470051 8_1:+74042038 None:intergenic
TCCGACGAAGGGGTGGCGCG+TGG 0.470364 8_1:+74044376 None:intergenic
CGGGTACAATTCCGATGAGT+TGG 0.471036 8_1:+74044600 None:intergenic
GTTGAAGAATCCCTTGAAGC+AGG 0.472477 8_1:-74042287 Msa1213830:CDS
AGGACAATCGGAAGGTTTCA+CGG 0.472653 8_1:-74043989 Msa1213830:CDS
TATTATACATTCAGTAGCAT+TGG 0.478800 8_1:+74042906 None:intergenic
GGCTGCTTCCTTGCCGTCGT+CGG 0.478828 8_1:+74043924 None:intergenic
ACATCTAAGAGTCAAGGAAA+TGG 0.484092 8_1:-74042377 Msa1213830:CDS
AGAAGAGCTTCCATTTCTCC+GGG 0.485310 8_1:-74043888 Msa1213830:CDS
GAAGACCGCGAGGAAGAATT+GGG 0.485667 8_1:-74043754 Msa1213830:CDS
TCCAAGTTTGCAGGTCTTGG+TGG 0.486001 8_1:-74043345 Msa1213830:CDS
CTCCATCAGAACTTCAGAAA+AGG 0.488000 8_1:-74042424 Msa1213830:CDS
CCGACGAAGGGGTGGCGCGT+GGG 0.494772 8_1:+74044377 None:intergenic
ACCACACATTTGGACGGTAC+TGG 0.494996 8_1:+74044035 None:intergenic
TTGTGCGGTGGTCGTGTTGG+TGG 0.495177 8_1:+74044256 None:intergenic
TGGACCGCGTGGTTTCTAAA+GGG 0.500717 8_1:-74042157 Msa1213830:CDS
TTAAATCAAACTCGAAGTTA+CGG 0.502752 8_1:+74041909 None:intergenic
TGCTGCTGCAGCATTAGAAG+AGG 0.503717 8_1:-74042929 Msa1213830:CDS
ATGGACTTTGATTGACATGT+TGG 0.503918 8_1:+74042521 None:intergenic
TAGACAGCCGTCTCCGACGA+CGG 0.506706 8_1:-74043937 Msa1213830:CDS
TGACAGAAGGAAGAGGGGTG+TGG 0.507074 8_1:+74044417 None:intergenic
TGGTTCCGGCGTTCCGACGA+AGG 0.509243 8_1:+74044364 None:intergenic
AACAAACCATGATGACTCAA+TGG 0.509923 8_1:-74041872 Msa1213830:three_prime_UTR
ATGAAAGAAACACTGGAGCT+TGG 0.510836 8_1:-74042353 Msa1213830:CDS
TTCCTTGCCGTCGTCGGAGA+CGG 0.511810 8_1:+74043930 None:intergenic
AACACCGACACACGTGTCAC+CGG 0.513735 8_1:-74044644 Msa1213830:CDS
AGATGAGCAATGTTCATTCA+CGG 0.514388 8_1:-74044208 Msa1213830:CDS
GGTTCCGGCGTTCCGACGAA+GGG 0.515235 8_1:+74044365 None:intergenic
GCTAAACGATCACAATCTGC+AGG 0.518004 8_1:-74044125 Msa1213830:CDS
TTTCTGCTCGAGAGGACAAT+CGG 0.518876 8_1:-74044001 Msa1213830:CDS
GTTGAGAAAGAAGCCTTCGT+TGG 0.523258 8_1:+74044553 None:intergenic
AAGAGGAGAACGGTGGTCGC+CGG 0.524267 8_1:+74044625 None:intergenic
CCCACGCGCCACCCCTTCGT+CGG 0.526098 8_1:-74044377 Msa1213830:CDS
TGGGATGAACAAAATGTTGA+AGG 0.528068 8_1:-74043735 Msa1213830:CDS
GTGAATTGAGTGTGTGTGTG+TGG 0.528700 8_1:+74044729 None:intergenic
AGATTGTGCGGTGGTCGTGT+TGG 0.530919 8_1:+74044253 None:intergenic
GTAGAGTGAAAGAGGGTCAT+CGG 0.531370 8_1:+74044283 None:intergenic
CATGAAAAGAAATGGACTGA+TGG 0.533330 8_1:-74043312 Msa1213830:CDS
TCCGATCTCTTCTCCAACGA+AGG 0.541927 8_1:-74044566 Msa1213830:CDS
GGGTCATCGGAATCCGATAA+CGG 0.544450 8_1:+74044296 None:intergenic
GGACAATCGGAAGGTTTCAC+GGG 0.547990 8_1:-74043988 Msa1213830:CDS
GTTGGAGAAGAGATCGGAGC+TGG 0.548071 8_1:+74044571 None:intergenic
GATGAAAATCTCTTCGGCGT+TGG 0.550115 8_1:+74044158 None:intergenic
GAAGCGAGTAAATGCATGGT+TGG 0.550345 8_1:-74042177 Msa1213830:CDS
CATCGGAATCCGATAACGGT+TGG 0.551577 8_1:+74044300 None:intergenic
AACTTGTCTATGGTTGGCAA+AGG 0.553870 8_1:+74042620 None:intergenic
GCCGGAGATGAAAATCTCTT+CGG 0.553949 8_1:+74044152 None:intergenic
CAAAAGTTGATCCTACATGC+TGG 0.555614 8_1:+74042075 None:intergenic
TGGGAAGAAAGCATTGCCTC+TGG 0.557044 8_1:-74042234 Msa1213830:CDS
TGGAGAGGTAGAGTGAAAGA+GGG 0.559288 8_1:+74044276 None:intergenic
GGACGAATGTTGGTGACAGA+AGG 0.561250 8_1:+74044404 None:intergenic
TCTCCGGGGAGAAGATTGTC+CGG 0.562207 8_1:-74043873 Msa1213830:CDS
GAGTTTGGTTTCTGCTCGAG+AGG 0.563793 8_1:-74044009 Msa1213830:CDS
CAAACTTTCAAGGCTTGGAA+AGG 0.566906 8_1:-74043262 Msa1213830:intron
GAGATCGGAGCTGGATAAAG+CGG 0.567835 8_1:+74044580 None:intergenic
TGCTCGAGAGGACAATCGGA+AGG 0.568084 8_1:-74043997 Msa1213830:CDS
CCGGCGTTCCGACGAAGGGG+TGG 0.569095 8_1:+74044369 None:intergenic
TACTGTCAGAAATGCAAATG+TGG 0.570442 8_1:-74042322 Msa1213830:CDS
GAGAGAGATCCATCTCCGGC+GGG 0.572867 8_1:-74044080 Msa1213830:CDS
ACGATTATTGAGAATGAGAT+CGG 0.574044 8_1:+74044481 None:intergenic
CGAAGAAGAAGATGGTAGCT+GGG 0.578184 8_1:-74043812 Msa1213830:CDS
TCTCCTCTTCTCCAACTCAT+CGG 0.580371 8_1:-74044611 Msa1213830:CDS
AAATAATTCAGGATGAAGCA+GGG 0.580487 8_1:+74042039 None:intergenic
AAATGGAATGAAAGAAACAC+TGG 0.581658 8_1:-74042360 Msa1213830:CDS
TTCTACTGCGAAGAAGAAGA+TGG 0.582612 8_1:-74043820 Msa1213830:CDS
AGCCGTCTCCGACGACGGCA+AGG 0.583416 8_1:-74043932 Msa1213830:CDS
CTTAGCACATCTAAGAGTCA+AGG 0.583945 8_1:-74042383 Msa1213830:CDS
GCAGTAGAATCTCCAACAGC+CGG 0.584352 8_1:+74043834 None:intergenic
ATGTGACAAAACAATAGCAA+TGG 0.584972 8_1:+74042202 None:intergenic
GGCGTTGGTAAATTATCTCG+TGG 0.585036 8_1:+74044173 None:intergenic
GAACCTAAAGAAAAGAGTGT+TGG 0.585985 8_1:-74043711 Msa1213830:CDS
GTGAGAGAGAAGAACGTAGG+TGG 0.587901 8_1:+74044511 None:intergenic
CGTGGGGAGAGGACGAATGT+TGG 0.589608 8_1:+74044394 None:intergenic
TGCTGAGAGAGATCCATCTC+CGG 0.591594 8_1:-74044084 Msa1213830:CDS
CCACCCCTTCGTCGGAACGC+CGG 0.591684 8_1:-74044369 Msa1213830:CDS
CTCGGAACCACACATTTGGA+CGG 0.593446 8_1:+74044029 None:intergenic
TTAGAGCTTGTTTGTCAATG+TGG 0.593742 8_1:-74041843 Msa1213830:three_prime_UTR
TGTTGGTGACAGAAGGAAGA+GGG 0.595214 8_1:+74044411 None:intergenic
AGGAGTTTAAGGATTAGGCC+TGG 0.595603 8_1:+74044677 None:intergenic
AGATCGGAGCTGGATAAAGC+GGG 0.597846 8_1:+74044581 None:intergenic
CGGTGGTCGTGTTGGTGGAG+AGG 0.598089 8_1:+74044261 None:intergenic
TGGCTTTACACACAGAGCAA+AGG 0.599456 8_1:+74042648 None:intergenic
AAAGCATTGCCTCTGGATGG+TGG 0.600362 8_1:-74042227 Msa1213830:CDS
CCACCGGACAATCTTCTCCC+CGG 0.602241 8_1:+74043870 None:intergenic
GCCTTCGTTGGAGAAGAGAT+CGG 0.602669 8_1:+74044565 None:intergenic
TTTGGCAGGTTTCAATGACA+AGG 0.605429 8_1:-74043473 Msa1213830:intron
CGGCGAAAACTTGATTCCAC+CGG 0.606042 8_1:+74043854 None:intergenic
GGAATCCGATAACGGTTGGA+TGG 0.609247 8_1:+74044304 None:intergenic
AGCTTCAACCCAAAGAGAGA+TGG 0.609494 8_1:+74042502 None:intergenic
ATTCCGATGAGTTGGAGAAG+AGG 0.613210 8_1:+74044608 None:intergenic
TTGCCAGACACAGCATCAAG+AGG 0.613318 8_1:+74043282 None:intergenic
TGAGAATGAGATCGGTGTCA+GGG 0.613668 8_1:+74044489 None:intergenic
GATCTCTTCATCTTCCCCGC+CGG 0.614124 8_1:+74044065 None:intergenic
AAATTATCTCGTGGAGCAAG+TGG 0.614804 8_1:+74044182 None:intergenic
TTCTCCTCAAAGTTGTTCGG+AGG 0.614917 8_1:-74043376 Msa1213830:CDS
ACCAGTACCGTCCAAATGTG+TGG 0.616450 8_1:-74044036 Msa1213830:CDS
GAATCCAGGATGCAATGGAA+AGG 0.616518 8_1:-74042972 Msa1213830:intron
TTGGAGAGAGTGCTAGTGGT+GGG 0.617153 8_1:-74042253 Msa1213830:CDS
GAACTGAATCCAGGATGCAA+TGG 0.617581 8_1:-74042977 Msa1213830:intron
TGAGAGAGATCCATCTCCGG+CGG 0.617931 8_1:-74044081 Msa1213830:CDS
TTAGATGTGCTAAGAGAGTG+TGG 0.620341 8_1:+74042392 None:intergenic
TGGAGTTGAGAGAATCAGAG+AGG 0.621797 8_1:+74044531 None:intergenic
ATTTGAAGCGAGTAAATGCA+TGG 0.624105 8_1:-74042181 Msa1213830:CDS
TTCATCCCAATTCTTCCTCG+CGG 0.625235 8_1:+74043749 None:intergenic
GTGTTTGGAGAGAGTGCTAG+TGG 0.625689 8_1:-74042257 Msa1213830:CDS
GTTGGTGACAGAAGGAAGAG+GGG 0.626731 8_1:+74044412 None:intergenic
AATAATTCAGGATGAAGCAG+GGG 0.629849 8_1:+74042040 None:intergenic
GATGTTGATATTCTGATGAA+AGG 0.630397 8_1:-74041990 Msa1213830:three_prime_UTR
TGTCCTAAGATCAATCGCAC+TGG 0.634675 8_1:-74042579 Msa1213830:CDS
GCTCTTCTAGGATTCGGCGA+AGG 0.635698 8_1:+74043903 None:intergenic
AAGAAAGCATTGCCTCTGGA+TGG 0.635733 8_1:-74042230 Msa1213830:CDS
AAATGCATGGTTGGACCGCG+TGG 0.636414 8_1:-74042168 Msa1213830:CDS
ATGTTGGTGACAGAAGGAAG+AGG 0.638385 8_1:+74044410 None:intergenic
ATGGTGAAATGACGAGTGGT+AGG 0.640964 8_1:+74044323 None:intergenic
AGAGATGTTGTTATACAGAG+CGG 0.642445 8_1:+74044757 None:intergenic
ACAATGGCTTCACTAACACC+AGG 0.650124 8_1:-74044695 Msa1213830:CDS
TTCACAACACAACACAACAA+TGG 0.651685 8_1:-74044711 Msa1213830:exon
GACGGCTGTCTATACCTCGA+CGG 0.652957 8_1:+74043948 None:intergenic
TGAGTTGGAGAAGAGGAGAA+CGG 0.654800 8_1:+74044615 None:intergenic
GGATACTATCTGAAGATCAG+TGG 0.655304 8_1:+74042472 None:intergenic
TCTCGAGCAGAAACCAAACT+CGG 0.655575 8_1:+74044011 None:intergenic
GTCGCCGGTGACACGTGTGT+CGG 0.656725 8_1:+74044640 None:intergenic
TTTGGAGAGAGTGCTAGTGG+TGG 0.657547 8_1:-74042254 Msa1213830:CDS
GTTCCGGCGTTCCGACGAAG+GGG 0.658890 8_1:+74044366 None:intergenic
AGAGAGATCCATCTCCGGCG+GGG 0.662479 8_1:-74044079 Msa1213830:CDS
AGGGTGAGAGAGAAGAACGT+AGG 0.672472 8_1:+74044508 None:intergenic
AATGAAAGCGATCAACGTAG+AGG 0.674194 8_1:+74044441 None:intergenic
CCGCAATTATTGTTCCGTCG+AGG 0.674338 8_1:-74043962 Msa1213830:CDS
CTAAACGATCACAATCTGCA+GGG 0.675497 8_1:-74044124 Msa1213830:CDS
GCAATGGAGCCACCATCCAG+AGG 0.690113 8_1:+74042218 None:intergenic
CCGGGGAGAAGATTGTCCGG+TGG 0.691617 8_1:-74043870 Msa1213830:CDS
CTGGATCGGCGAAGACCGCG+AGG 0.692993 8_1:-74043764 Msa1213830:CDS
CCTCGACGGAACAATAATTG+CGG 0.694736 8_1:+74043962 None:intergenic
AATCAAACTCGAAGTTACGG+CGG 0.702084 8_1:+74041912 None:intergenic
GGTGAAATACGAGCTACGAG+TGG 0.708456 8_1:+74044344 None:intergenic
GAAGAGCTTCCATTTCTCCG+GGG 0.716426 8_1:-74043887 Msa1213830:CDS
TTGAATGGGAGATTGTGCGG+TGG 0.718527 8_1:+74044244 None:intergenic
GTTGGAGAAGAGGAGAACGG+TGG 0.749997 8_1:+74044618 None:intergenic
TTGGATGGTGAAATGACGAG+TGG 0.760115 8_1:+74044319 None:intergenic
GATTCCCTTTAGAAACCACG+CGG 0.796785 8_1:+74042153 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATTTTTTTTTTTTTTATAT+AGG - chr8_1:74042978-74042997 Msa1213830:intron 0.0%
!!! ATTTTTTTTTTTTTTATATA+GGG - chr8_1:74042979-74042998 Msa1213830:intron 0.0%
!! AATGTATAATAAGAAATTTA+AGG - chr8_1:74043703-74043722 Msa1213830:CDS 10.0%
!! TTAATTAATGAATGCTTAAT+TGG - chr8_1:74043008-74043027 Msa1213830:intron 15.0%
!! AAATTAAAGAGAAAAATCTA+TGG - chr8_1:74044490-74044509 Msa1213830:CDS 15.0%
!! TTACAATTCATGAAAAGAAA+TGG - chr8_1:74043277-74043296 Msa1213830:CDS 20.0%
!!! AATTTAACATTCATTTCTAG+TGG - chr8_1:74043371-74043390 Msa1213830:CDS 20.0%
!! TCAGAAAACAAAAATAATTC+AGG + chr8_1:74044572-74044591 None:intergenic 20.0%
!!! TTCTGTTGATTGTTTTGAAT+GGG + chr8_1:74042370-74042389 None:intergenic 25.0%
!!! TTCTAAGATTTCTGATATGT+TGG - chr8_1:74042810-74042829 Msa1213830:intron 25.0%
! AATTTAGATTGAGCTAAGAA+TGG - chr8_1:74043052-74043071 Msa1213830:intron 25.0%
!!! TGAAATGATGCTGATTTTTT+TGG - chr8_1:74043106-74043125 Msa1213830:intron 25.0%
!! AATCATTGTCATCTGATTTT+CGG + chr8_1:74043170-74043189 None:intergenic 25.0%
!!! TTTCTAGTGGTCTTATAATA+TGG - chr8_1:74043384-74043403 Msa1213830:CDS 25.0%
! GTTTATGCATTAGAAATGAT+AGG - chr8_1:74043487-74043506 Msa1213830:intron 25.0%
! GAAGGCAAATTTGATTAAAT+TGG - chr8_1:74043587-74043606 Msa1213830:intron 25.0%
! TATTATACATTCAGTAGCAT+TGG + chr8_1:74043694-74043713 None:intergenic 25.0%
! TAAAATGAAAACAATGCCAA+TGG + chr8_1:74043793-74043812 None:intergenic 25.0%
! AATGATCCATTTACTATTCA+AGG - chr8_1:74043828-74043847 Msa1213830:CDS 25.0%
! ATGATCCATTTACTATTCAA+GGG - chr8_1:74043829-74043848 Msa1213830:CDS 25.0%
! TTAAACCCTTGAATAGTAAA+TGG + chr8_1:74043837-74043856 None:intergenic 25.0%
!!! TATGTCATTTTCAGTAAGAA+GGG + chr8_1:74044149-74044168 None:intergenic 25.0%
! TTTCTGATTTACTTTGACTA+TGG - chr8_1:74044585-74044604 Msa1213830:CDS 25.0%
! TTAAATCAAACTCGAAGTTA+CGG + chr8_1:74044691-74044710 None:intergenic 25.0%
ACGATTATTGAGAATGAGAT+CGG + chr8_1:74042119-74042138 None:intergenic 30.0%
CTCAATAATCGTCTTCAATT+AGG - chr8_1:74042127-74042146 Msa1213830:CDS 30.0%
!!! CTTCTGTTGATTGTTTTGAA+TGG + chr8_1:74042371-74042390 None:intergenic 30.0%
!! TCAATCAATTTTGAGAACTC+AGG - chr8_1:74042930-74042949 Msa1213830:CDS 30.0%
!!! GCTTGGAAAGGTATTAATTT+TGG - chr8_1:74043347-74043366 Msa1213830:CDS 30.0%
!!! ATTCACACTGCATTTTTTAG+TGG + chr8_1:74043444-74043463 None:intergenic 30.0%
ATGATAGGTTTGTAGATGAT+AGG - chr8_1:74043502-74043521 Msa1213830:intron 30.0%
CCAAAATAATGGTCAATTCA+AGG + chr8_1:74043546-74043565 None:intergenic 30.0%
! CCTTGAATTGACCATTATTT+TGG - chr8_1:74043543-74043562 Msa1213830:intron 30.0%
!!! TGACCATTATTTTGGTGATT+TGG - chr8_1:74043551-74043570 Msa1213830:intron 30.0%
!! TTTGGCTCTATTTGATTAGA+AGG - chr8_1:74043569-74043588 Msa1213830:intron 30.0%
! TTTTATTGTGAACTGAATCC+AGG - chr8_1:74043611-74043630 Msa1213830:intron 30.0%
!! TTTGACCTGGTTTTTAACAT+TGG - chr8_1:74043737-74043756 Msa1213830:CDS 30.0%
TATACCAAAGTTAAGTCCAT+TGG - chr8_1:74043774-74043793 Msa1213830:CDS 30.0%
CTTGTTTACTTCCTCTTTAA+TGG - chr8_1:74043866-74043885 Msa1213830:CDS 30.0%
GTAAAAAACTTGTCTATGGT+TGG + chr8_1:74043986-74044005 None:intergenic 30.0%
GATGGTAAAAAACTTGTCTA+TGG + chr8_1:74043990-74044009 None:intergenic 30.0%
!!! CTATGTCATTTTCAGTAAGA+AGG + chr8_1:74044150-74044169 None:intergenic 30.0%
AAATGGAATGAAAGAAACAC+TGG - chr8_1:74044237-74044256 Msa1213830:CDS 30.0%
ATGTGACAAAACAATAGCAA+TGG + chr8_1:74044398-74044417 None:intergenic 30.0%
AAATAATTCAGGATGAAGCA+GGG + chr8_1:74044561-74044580 None:intergenic 30.0%
AAAATAATTCAGGATGAAGC+AGG + chr8_1:74044562-74044581 None:intergenic 30.0%
GATGTTGATATTCTGATGAA+AGG - chr8_1:74044607-74044626 Msa1213830:CDS 30.0%
! CTAGCTTATGAAGTTGATTA+GGG - chr8_1:74044660-74044679 Msa1213830:CDS 30.0%
ATTTAACCATTGAGTCATCA+TGG + chr8_1:74044734-74044753 None:intergenic 30.0%
AGAGATGTTGTTATACAGAG+CGG + chr8_1:74041843-74041862 None:intergenic 35.0%
TTCACAACACAACACAACAA+TGG - chr8_1:74041886-74041905 Msa1213830:three_prime_UTR 35.0%
CTTGTAGGAGTTTAAGGATT+AGG + chr8_1:74041928-74041947 None:intergenic 35.0%
TCATTGCTTGTAGGAGTTTA+AGG + chr8_1:74041934-74041953 None:intergenic 35.0%
AGATGAGCAATGTTCATTCA+CGG - chr8_1:74042389-74042408 Msa1213830:CDS 35.0%
AAGATTTCTGATATGTTGGC+TGG - chr8_1:74042814-74042833 Msa1213830:intron 35.0%
TGGGATGAACAAAATGTTGA+AGG - chr8_1:74042862-74042881 Msa1213830:intron 35.0%
! GAACCTAAAGAAAAGAGTGT+TGG - chr8_1:74042886-74042905 Msa1213830:intron 35.0%
! GAACCAACACTCTTTTCTTT+AGG + chr8_1:74042892-74042911 None:intergenic 35.0%
!! AGAGTGTTGGTTCTAAAACT+AGG - chr8_1:74042899-74042918 Msa1213830:CDS 35.0%
!! GAGTGTTGGTTCTAAAACTA+GGG - chr8_1:74042900-74042919 Msa1213830:CDS 35.0%
!!! ATGATGCTGATTTTTTTGGC+AGG - chr8_1:74043110-74043129 Msa1213830:intron 35.0%
!! CATGAAAAGAAATGGACTGA+TGG - chr8_1:74043285-74043304 Msa1213830:CDS 35.0%
GAGCCAAATCACCAAAATAA+TGG + chr8_1:74043557-74043576 None:intergenic 35.0%
CAGTTCCAATGTTAAAAACC+AGG + chr8_1:74043745-74043764 None:intergenic 35.0%
! AATGCCAATGGACTTAACTT+TGG + chr8_1:74043781-74043800 None:intergenic 35.0%
ATACATGTCAGCCATTAAAG+AGG + chr8_1:74043880-74043899 None:intergenic 35.0%
! TATGGTTGGCAAAGGATTTT+TGG + chr8_1:74043972-74043991 None:intergenic 35.0%
TCTTAGGACATCATCATAGA+TGG + chr8_1:74044008-74044027 None:intergenic 35.0%
ATGGACTTTGATTGACATGT+TGG + chr8_1:74044079-74044098 None:intergenic 35.0%
AATCAAAGTCCATCTCTCTT+TGG - chr8_1:74044086-74044105 Msa1213830:CDS 35.0%
ATCAAAGTCCATCTCTCTTT+GGG - chr8_1:74044087-74044106 Msa1213830:CDS 35.0%
ACATCTAAGAGTCAAGGAAA+TGG - chr8_1:74044220-74044239 Msa1213830:CDS 35.0%
TACTGTCAGAAATGCAAATG+TGG - chr8_1:74044275-74044294 Msa1213830:CDS 35.0%
CACTTTAAATCCTGCTTCAA+GGG + chr8_1:74044323-74044342 None:intergenic 35.0%
ACACTTTAAATCCTGCTTCA+AGG + chr8_1:74044324-74044343 None:intergenic 35.0%
! GAAGCAGGATTTAAAGTGTT+TGG - chr8_1:74044325-74044344 Msa1213830:CDS 35.0%
! ATTTGAAGCGAGTAAATGCA+TGG - chr8_1:74044416-74044435 Msa1213830:CDS 35.0%
AATAATTCAGGATGAAGCAG+GGG + chr8_1:74044560-74044579 None:intergenic 35.0%
! GCTAGCTTATGAAGTTGATT+AGG - chr8_1:74044659-74044678 Msa1213830:CDS 35.0%
AACAAACCATGATGACTCAA+TGG - chr8_1:74044725-74044744 Msa1213830:five_prime_UTR 35.0%
! TTAGAGCTTGTTTGTCAATG+TGG - chr8_1:74044754-74044773 Msa1213830:five_prime_UTR 35.0%
TGAATTGAGTGTGTGTGTGT+GGG + chr8_1:74041870-74041889 None:intergenic 40.0%
AATGAAAGCGATCAACGTAG+AGG + chr8_1:74042159-74042178 None:intergenic 40.0%
TTTCACCATCCAACCGTTAT+CGG - chr8_1:74042288-74042307 Msa1213830:CDS 40.0%
!! GTTTTGAATGGGAGATTGTG+CGG + chr8_1:74042359-74042378 None:intergenic 40.0%
AAATTATCTCGTGGAGCAAG+TGG + chr8_1:74042418-74042437 None:intergenic 40.0%
CTAAACGATCACAATCTGCA+GGG - chr8_1:74042473-74042492 Msa1213830:CDS 40.0%
!! ATGGAAGCTCTTCTAGGATT+CGG + chr8_1:74042703-74042722 None:intergenic 40.0%
TAGAAGAGCTTCCATTTCTC+CGG - chr8_1:74042708-74042727 Msa1213830:intron 40.0%
TTCTACTGCGAAGAAGAAGA+TGG - chr8_1:74042777-74042796 Msa1213830:intron 40.0%
! TTCTGATATGTTGGCTGGAT+CGG - chr8_1:74042819-74042838 Msa1213830:intron 40.0%
TTTGGCAGGTTTCAATGACA+AGG - chr8_1:74043124-74043143 Msa1213830:intron 40.0%
CTCTTCTCCTCAAAGTTGTT+CGG - chr8_1:74043218-74043237 Msa1213830:intron 40.0%
GTAGAGAAATCCAAGTTTGC+AGG - chr8_1:74043243-74043262 Msa1213830:intron 40.0%
AAATCCAAGTTTGCAGGTCT+TGG - chr8_1:74043249-74043268 Msa1213830:intron 40.0%
CAAACTTTCAAGGCTTGGAA+AGG - chr8_1:74043335-74043354 Msa1213830:CDS 40.0%
!!! CACACTGCATTTTTTAGTGG+TGG + chr8_1:74043441-74043460 None:intergenic 40.0%
TAGGTTTGTAGATGATAGGC+TGG - chr8_1:74043506-74043525 Msa1213830:intron 40.0%
GGTAACGATTTCATTTGACC+TGG - chr8_1:74043724-74043743 Msa1213830:CDS 40.0%
AACTTGTCTATGGTTGGCAA+AGG + chr8_1:74043980-74043999 None:intergenic 40.0%
GGATACTATCTGAAGATCAG+TGG + chr8_1:74044128-74044147 None:intergenic 40.0%
CTCCATCAGAACTTCAGAAA+AGG - chr8_1:74044173-74044192 Msa1213830:CDS 40.0%
!!! AGCCTTTTCTGAAGTTCTGA+TGG + chr8_1:74044178-74044197 None:intergenic 40.0%
TTAGATGTGCTAAGAGAGTG+TGG + chr8_1:74044208-74044227 None:intergenic 40.0%
CTTAGCACATCTAAGAGTCA+AGG - chr8_1:74044214-74044233 Msa1213830:CDS 40.0%
ATGAAAGAAACACTGGAGCT+TGG - chr8_1:74044244-74044263 Msa1213830:CDS 40.0%
!!! GGTTTTGTTATCCAGCATGT+AGG - chr8_1:74044511-74044530 Msa1213830:CDS 40.0%
! CAAAAGTTGATCCTACATGC+TGG + chr8_1:74044525-74044544 None:intergenic 40.0%
AATCAAACTCGAAGTTACGG+CGG + chr8_1:74044688-74044707 None:intergenic 40.0%
GTGAATTGAGTGTGTGTGTG+TGG + chr8_1:74041871-74041890 None:intergenic 45.0%
ACAATGGCTTCACTAACACC+AGG - chr8_1:74041902-74041921 Msa1213830:three_prime_UTR 45.0%
AGGAGTTTAAGGATTAGGCC+TGG + chr8_1:74041923-74041942 None:intergenic 45.0%
! TGTCGGTGTTCATTGCTTGT+AGG + chr8_1:74041943-74041962 None:intergenic 45.0%
! TGAGTTGGAGAAGAGGAGAA+CGG + chr8_1:74041985-74042004 None:intergenic 45.0%
TCTCCTCTTCTCCAACTCAT+CGG - chr8_1:74041986-74042005 Msa1213830:three_prime_UTR 45.0%
! ATTCCGATGAGTTGGAGAAG+AGG + chr8_1:74041992-74042011 None:intergenic 45.0%
GTTGAGAAAGAAGCCTTCGT+TGG + chr8_1:74042047-74042066 None:intergenic 45.0%
TGGAGTTGAGAGAATCAGAG+AGG + chr8_1:74042069-74042088 None:intergenic 45.0%
!! TGAGAATGAGATCGGTGTCA+GGG + chr8_1:74042111-74042130 None:intergenic 45.0%
! TTGAGAATGAGATCGGTGTC+AGG + chr8_1:74042112-74042131 None:intergenic 45.0%
!! TGTTGGTGACAGAAGGAAGA+GGG + chr8_1:74042189-74042208 None:intergenic 45.0%
!! ATGTTGGTGACAGAAGGAAG+AGG + chr8_1:74042190-74042209 None:intergenic 45.0%
ATGGTGAAATGACGAGTGGT+AGG + chr8_1:74042277-74042296 None:intergenic 45.0%
TTGGATGGTGAAATGACGAG+TGG + chr8_1:74042281-74042300 None:intergenic 45.0%
GTAGAGTGAAAGAGGGTCAT+CGG + chr8_1:74042317-74042336 None:intergenic 45.0%
TGGAGAGGTAGAGTGAAAGA+GGG + chr8_1:74042324-74042343 None:intergenic 45.0%
!! GGCGTTGGTAAATTATCTCG+TGG + chr8_1:74042427-74042446 None:intergenic 45.0%
GATGAAAATCTCTTCGGCGT+TGG + chr8_1:74042442-74042461 None:intergenic 45.0%
! GCCGAAGAGATTTTCATCTC+CGG - chr8_1:74042444-74042463 Msa1213830:CDS 45.0%
GCCGGAGATGAAAATCTCTT+CGG + chr8_1:74042448-74042467 None:intergenic 45.0%
GCTAAACGATCACAATCTGC+AGG - chr8_1:74042472-74042491 Msa1213830:CDS 45.0%
TCACAATCTGCAGGGAAGTT+TGG - chr8_1:74042481-74042500 Msa1213830:CDS 45.0%
CAAACTCGGAACCACACATT+TGG + chr8_1:74042575-74042594 None:intergenic 45.0%
CAAATGTGTGGTTCCGAGTT+TGG - chr8_1:74042573-74042592 Msa1213830:CDS 45.0%
TCTCGAGCAGAAACCAAACT+CGG + chr8_1:74042589-74042608 None:intergenic 45.0%
TTTCTGCTCGAGAGGACAAT+CGG - chr8_1:74042596-74042615 Msa1213830:CDS 45.0%
AGGACAATCGGAAGGTTTCA+CGG - chr8_1:74042608-74042627 Msa1213830:CDS 45.0%
CCTCGACGGAACAATAATTG+CGG + chr8_1:74042638-74042657 None:intergenic 45.0%
GGAGAAATGGAAGCTCTTCT+AGG + chr8_1:74042709-74042728 None:intergenic 45.0%
AGAAGAGCTTCCATTTCTCC+GGG - chr8_1:74042709-74042728 Msa1213830:intron 45.0%
CGAAGAAGAAGATGGTAGCT+GGG - chr8_1:74042785-74042804 Msa1213830:intron 45.0%
TTCATCCCAATTCTTCCTCG+CGG + chr8_1:74042851-74042870 None:intergenic 45.0%
TTCTCCTCAAAGTTGTTCGG+AGG - chr8_1:74043221-74043240 Msa1213830:intron 45.0%
TCTACCTCCGAACAACTTTG+AGG + chr8_1:74043228-74043247 None:intergenic 45.0%
CTGTGTCTGGCAAACTTTCA+AGG - chr8_1:74043325-74043344 Msa1213830:CDS 45.0%
TCTGGCAAACTTTCAAGGCT+TGG - chr8_1:74043330-74043349 Msa1213830:CDS 45.0%
TTTGTAGATGATAGGCTGGC+TGG - chr8_1:74043510-74043529 Msa1213830:intron 45.0%
GAACTGAATCCAGGATGCAA+TGG - chr8_1:74043620-74043639 Msa1213830:intron 45.0%
GAATCCAGGATGCAATGGAA+AGG - chr8_1:74043625-74043644 Msa1213830:intron 45.0%
CTTTCCTTTCCATTGCATCC+TGG + chr8_1:74043632-74043651 None:intergenic 45.0%
GTCTGAAAACATGCTGAAGC+AGG + chr8_1:74043930-74043949 None:intergenic 45.0%
! TGGCTTTACACACAGAGCAA+AGG + chr8_1:74043952-74043971 None:intergenic 45.0%
TGTCCTAAGATCAATCGCAC+TGG - chr8_1:74044018-74044037 Msa1213830:CDS 45.0%
AGCTTCAACCCAAAGAGAGA+TGG + chr8_1:74044098-74044117 None:intergenic 45.0%
!! TCTTTGGGTTGAAGCTGCTT+TGG - chr8_1:74044102-74044121 Msa1213830:CDS 45.0%
GTTGAAGAATCCCTTGAAGC+AGG - chr8_1:74044310-74044329 Msa1213830:CDS 45.0%
!! AAGAAAGCATTGCCTCTGGA+TGG - chr8_1:74044367-74044386 Msa1213830:CDS 45.0%
GAAGCGAGTAAATGCATGGT+TGG - chr8_1:74044420-74044439 Msa1213830:CDS 45.0%
! GATTCCCTTTAGAAACCACG+CGG + chr8_1:74044447-74044466 None:intergenic 45.0%
CGGGTACAATTCCGATGAGT+TGG + chr8_1:74042000-74042019 None:intergenic 50.0%
AGATCGGAGCTGGATAAAGC+GGG + chr8_1:74042019-74042038 None:intergenic 50.0%
GAGATCGGAGCTGGATAAAG+CGG + chr8_1:74042020-74042039 None:intergenic 50.0%
TCCGATCTCTTCTCCAACGA+AGG - chr8_1:74042031-74042050 Msa1213830:exon 50.0%
GCCTTCGTTGGAGAAGAGAT+CGG + chr8_1:74042035-74042054 None:intergenic 50.0%
GTGAGAGAGAAGAACGTAGG+TGG + chr8_1:74042089-74042108 None:intergenic 50.0%
AGGGTGAGAGAGAAGAACGT+AGG + chr8_1:74042092-74042111 None:intergenic 50.0%
AGCGATCAACGTAGAGGAAC+TGG + chr8_1:74042153-74042172 None:intergenic 50.0%
!! GTTGGTGACAGAAGGAAGAG+GGG + chr8_1:74042188-74042207 None:intergenic 50.0%
!! GGACGAATGTTGGTGACAGA+AGG + chr8_1:74042196-74042215 None:intergenic 50.0%
ATACGAGCTACGAGTGGTTC+CGG + chr8_1:74042250-74042269 None:intergenic 50.0%
GGTGAAATACGAGCTACGAG+TGG + chr8_1:74042256-74042275 None:intergenic 50.0%
! GGAATCCGATAACGGTTGGA+TGG + chr8_1:74042296-74042315 None:intergenic 50.0%
! CATCGGAATCCGATAACGGT+TGG + chr8_1:74042300-74042319 None:intergenic 50.0%
GGGTCATCGGAATCCGATAA+CGG + chr8_1:74042304-74042323 None:intergenic 50.0%
GTGGAGAGGTAGAGTGAAAG+AGG + chr8_1:74042325-74042344 None:intergenic 50.0%
TTGAATGGGAGATTGTGCGG+TGG + chr8_1:74042356-74042375 None:intergenic 50.0%
TGTGATCGTTTAGCAGTCGC+CGG + chr8_1:74042466-74042485 None:intergenic 50.0%
TGCTGAGAGAGATCCATCTC+CGG - chr8_1:74042513-74042532 Msa1213830:CDS 50.0%
ACCAGTACCGTCCAAATGTG+TGG - chr8_1:74042561-74042580 Msa1213830:CDS 50.0%
ACCACACATTTGGACGGTAC+TGG + chr8_1:74042565-74042584 None:intergenic 50.0%
CTCGGAACCACACATTTGGA+CGG + chr8_1:74042571-74042590 None:intergenic 50.0%
! GAGTTTGGTTTCTGCTCGAG+AGG - chr8_1:74042588-74042607 Msa1213830:CDS 50.0%
GGACAATCGGAAGGTTTCAC+GGG - chr8_1:74042609-74042628 Msa1213830:CDS 50.0%
CCGCAATTATTGTTCCGTCG+AGG - chr8_1:74042635-74042654 Msa1213830:CDS 50.0%
GAAGAGCTTCCATTTCTCCG+GGG - chr8_1:74042710-74042729 Msa1213830:intron 50.0%
CAATCTTCTCCCCGGAGAAA+TGG + chr8_1:74042722-74042741 None:intergenic 50.0%
CGGCGAAAACTTGATTCCAC+CGG + chr8_1:74042746-74042765 None:intergenic 50.0%
! CGGTGGAATCAAGTTTTCGC+CGG - chr8_1:74042744-74042763 Msa1213830:intron 50.0%
!! ATCAAGTTTTCGCCGGCTGT+TGG - chr8_1:74042751-74042770 Msa1213830:intron 50.0%
GCAGTAGAATCTCCAACAGC+CGG + chr8_1:74042766-74042785 None:intergenic 50.0%
GCGAAGAAGAAGATGGTAGC+TGG - chr8_1:74042784-74042803 Msa1213830:intron 50.0%
GAAGACCGCGAGGAAGAATT+GGG - chr8_1:74042843-74042862 Msa1213830:intron 50.0%
TCCAAGTTTGCAGGTCTTGG+TGG - chr8_1:74043252-74043271 Msa1213830:intron 50.0%
GTTCCTCTTGATGCTGTGTC+TGG - chr8_1:74043312-74043331 Msa1213830:CDS 50.0%
TTGCCAGACACAGCATCAAG+AGG + chr8_1:74043318-74043337 None:intergenic 50.0%
TGCTGCTGCAGCATTAGAAG+AGG - chr8_1:74043668-74043687 Msa1213830:CDS 50.0%
CAGCCAGTGCGATTGATCTT+AGG + chr8_1:74044024-74044043 None:intergenic 50.0%
!! GTGTTTGGAGAGAGTGCTAG+TGG - chr8_1:74044340-74044359 Msa1213830:CDS 50.0%
!! TTTGGAGAGAGTGCTAGTGG+TGG - chr8_1:74044343-74044362 Msa1213830:CDS 50.0%
!! TTGGAGAGAGTGCTAGTGGT+GGG - chr8_1:74044344-74044363 Msa1213830:CDS 50.0%
!! TGGGAAGAAAGCATTGCCTC+TGG - chr8_1:74044363-74044382 Msa1213830:CDS 50.0%
!! AAAGCATTGCCTCTGGATGG+TGG - chr8_1:74044370-74044389 Msa1213830:CDS 50.0%
TTGGACCGCGTGGTTTCTAA+AGG - chr8_1:74044439-74044458 Msa1213830:CDS 50.0%
TGGACCGCGTGGTTTCTAAA+GGG - chr8_1:74044440-74044459 Msa1213830:CDS 50.0%
AACACCGACACACGTGTCAC+CGG - chr8_1:74041953-74041972 Msa1213830:three_prime_UTR 55.0%
GTTGGAGAAGAGGAGAACGG+TGG + chr8_1:74041982-74042001 None:intergenic 55.0%
GTTGGAGAAGAGATCGGAGC+TGG + chr8_1:74042029-74042048 None:intergenic 55.0%
TGACAGAAGGAAGAGGGGTG+TGG + chr8_1:74042183-74042202 None:intergenic 55.0%
AGATTGTGCGGTGGTCGTGT+TGG + chr8_1:74042347-74042366 None:intergenic 55.0%
TGAGAGAGATCCATCTCCGG+CGG - chr8_1:74042516-74042535 Msa1213830:CDS 55.0%
GATCTCTTCATCTTCCCCGC+CGG + chr8_1:74042535-74042554 None:intergenic 55.0%
TGCTCGAGAGGACAATCGGA+AGG - chr8_1:74042600-74042619 Msa1213830:CDS 55.0%
GACGGCTGTCTATACCTCGA+CGG + chr8_1:74042652-74042671 None:intergenic 55.0%
!! GCTCTTCTAGGATTCGGCGA+AGG + chr8_1:74042697-74042716 None:intergenic 55.0%
TCTCCGGGGAGAAGATTGTC+CGG - chr8_1:74042724-74042743 Msa1213830:intron 55.0%
CGAAGACCGCGAGGAAGAAT+TGG - chr8_1:74042842-74042861 Msa1213830:intron 55.0%
GCCACCAAGACCTGCAAACT+TGG + chr8_1:74043256-74043275 None:intergenic 55.0%
AAATGCATGGTTGGACCGCG+TGG - chr8_1:74044429-74044448 Msa1213830:CDS 55.0%
AAGAGGAGAACGGTGGTCGC+CGG + chr8_1:74041975-74041994 None:intergenic 60.0%
CGTGGGGAGAGGACGAATGT+TGG + chr8_1:74042206-74042225 None:intergenic 60.0%
TTGTGCGGTGGTCGTGTTGG+TGG + chr8_1:74042344-74042363 None:intergenic 60.0%
GAGAGAGATCCATCTCCGGC+GGG - chr8_1:74042517-74042536 Msa1213830:CDS 60.0%
AGAGAGATCCATCTCCGGCG+GGG - chr8_1:74042518-74042537 Msa1213830:CDS 60.0%
TTCATCTTCCCCGCCGGAGA+TGG + chr8_1:74042529-74042548 None:intergenic 60.0%
TAGACAGCCGTCTCCGACGA+CGG - chr8_1:74042660-74042679 Msa1213830:CDS 60.0%
TTCCTTGCCGTCGTCGGAGA+CGG + chr8_1:74042670-74042689 None:intergenic 60.0%
CCACCGGACAATCTTCTCCC+CGG + chr8_1:74042730-74042749 None:intergenic 60.0%
GCAATGGAGCCACCATCCAG+AGG + chr8_1:74044382-74044401 None:intergenic 60.0%
GTCGCCGGTGACACGTGTGT+CGG + chr8_1:74041960-74041979 None:intergenic 65.0%
GTTCCGGCGTTCCGACGAAG+GGG + chr8_1:74042234-74042253 None:intergenic 65.0%
GGTTCCGGCGTTCCGACGAA+GGG + chr8_1:74042235-74042254 None:intergenic 65.0%
TGGTTCCGGCGTTCCGACGA+AGG + chr8_1:74042236-74042255 None:intergenic 65.0%
! CGGTGGTCGTGTTGGTGGAG+AGG + chr8_1:74042339-74042358 None:intergenic 65.0%
GGCTGCTTCCTTGCCGTCGT+CGG + chr8_1:74042676-74042695 None:intergenic 65.0%
CCGGGGAGAAGATTGTCCGG+TGG - chr8_1:74042727-74042746 Msa1213830:intron 65.0%
CCACCCCTTCGTCGGAACGC+CGG - chr8_1:74042228-74042247 Msa1213830:CDS 70.0%
AGCCGTCTCCGACGACGGCA+AGG - chr8_1:74042665-74042684 Msa1213830:intron 70.0%
CTGGATCGGCGAAGACCGCG+AGG - chr8_1:74042833-74042852 Msa1213830:intron 70.0%
AAGGGGTGGCGCGTGGGGAG+AGG + chr8_1:74042217-74042236 None:intergenic 75.0%
CGACGAAGGGGTGGCGCGTG+GGG + chr8_1:74042222-74042241 None:intergenic 75.0%
CCGACGAAGGGGTGGCGCGT+GGG + chr8_1:74042223-74042242 None:intergenic 75.0%
CCCACGCGCCACCCCTTCGT+CGG - chr8_1:74042220-74042239 Msa1213830:CDS 75.0%
TCCGACGAAGGGGTGGCGCG+TGG + chr8_1:74042224-74042243 None:intergenic 75.0%
CCGGCGTTCCGACGAAGGGG+TGG + chr8_1:74042231-74042250 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr8_1 gene 74041823 74044796 74041823 ID=Msa1213830;Name=Msa1213830
chr8_1 mRNA 74041823 74044796 74041823 ID=Msa1213830-mRNA-1;Parent=Msa1213830;Name=Msa1213830-mRNA-1;_AED=0.00;_eAED=0.00;_QI=82|1|1|1|1|1|4|223|666
chr8_1 exon 74041823 74042682 74041823 ID=Msa1213830-mRNA-1:exon:25317;Parent=Msa1213830-mRNA-1
chr8_1 exon 74042895 74042986 74042895 ID=Msa1213830-mRNA-1:exon:25316;Parent=Msa1213830-mRNA-1
chr8_1 exon 74043263 74043487 74043263 ID=Msa1213830-mRNA-1:exon:25315;Parent=Msa1213830-mRNA-1
chr8_1 exon 74043668 74044796 74043668 ID=Msa1213830-mRNA-1:exon:25314;Parent=Msa1213830-mRNA-1
chr8_1 five_prime_UTR 74044715 74044796 74044715 ID=Msa1213830-mRNA-1:five_prime_utr;Parent=Msa1213830-mRNA-1
chr8_1 CDS 74043668 74044714 74043668 ID=Msa1213830-mRNA-1:cds;Parent=Msa1213830-mRNA-1
chr8_1 CDS 74043263 74043487 74043263 ID=Msa1213830-mRNA-1:cds;Parent=Msa1213830-mRNA-1
chr8_1 CDS 74042895 74042986 74042895 ID=Msa1213830-mRNA-1:cds;Parent=Msa1213830-mRNA-1
chr8_1 CDS 74042046 74042682 74042046 ID=Msa1213830-mRNA-1:cds;Parent=Msa1213830-mRNA-1
chr8_1 three_prime_UTR 74041823 74042045 74041823 ID=Msa1213830-mRNA-1:three_prime_utr;Parent=Msa1213830-mRNA-1
Gene Sequence

>Msa1213830

ATGGCTTCACTAACACCAGGCCTAATCCTTAAACTCCTACAAGCAATGAACACCGACACACGTGTCACCGGCGACCACCGTTCTCCTCTTCTCCAACTCATCGGAATTGTACCCGCTTTATCCAGCTCCGATCTCTTCTCCAACGAAGGCTTCTTTCTCAACCTCTCTGATTCTCTCAACTCCACCTACGTTCTTCTCTCTCACCCTGACACCGATCTCATTCTCAATAATCGTCTTCAATTAGGCCAGTTCCTCTACGTTGATCGCTTTCATTTCCACACCCCTCTTCCTTCTGTCACCAACATTCGTCCTCTCCCCACGCGCCACCCCTTCGTCGGAACGCCGGAACCACTCGTAGCTCGTATTTCACCTACCACTCGTCATTTCACCATCCAACCGTTATCGGATTCCGATGACCCTCTTTCACTCTACCTCTCCACCAACACGACCACCGCACAATCTCCCATTCAAAACAATCAACAGAAGATGAGCAATGTTCATTCACGGCAACCACTTGCTCCACGAGATAATTTACCAACGCCGAAGAGATTTTCATCTCCGGCGACTGCTAAACGATCACAATCTGCAGGGAAGTTTGGTAAAGTTTCTGCTGAGAGAGATCCATCTCCGGCGGGGAAGATGAAGAGATCTTCTTCACCAGTACCGTCCAAATGTGTGGTTCCGAGTTTGGTTTCTGCTCGAGAGGACAATCGGAAGGTTTCACGGGAAGCCGCAATTATTGTTCCGTCGAGGTATAGACAGCCGTCTCCGACGACGGCAAGGAAGCAGCCTTCGCCGAATCCTAGAAGAGCTTCCATTTCTCCGGGGAGAAGATTGTCCGGTGGAATCAAGTTTTCGCCGGCTGTTGGAGATTCTACTGCGAAGAAGAAGATGGTAGCTGGGATTTCTAAGATTTCTGATATGTTGGCTGGATCGGCGAAGACCGCGAGGAAGAATTGGGATGAACAAAATGTTGAAGGTGAACCTAAAGAAAAGAGTGTTGGTTCTAAAACTAGGGTTGATTCTCAATCAATTTTGAGAACTCAGGTTTCAATGACAAGGAGATTGAGTGATGTGAAAAGCCGAAAATCAGATGACAATGATTCTTCTTCTATAGATGAGAATACTATAGACTCTTCTCCTCAAAGTTGTTCGGAGGTAGAGAAATCCAAGTTTGCAGGTCTTGGTGGCATTACAATTCATGAAAAGAAATGGACTGATGGAAGTGTTCCTCTTGATGCTGTGTCTGGCAAACTTTCAAGGCTTGGAAAGGATGCAATGGAAAGGAAAGCTCTTGCTTCTGCAGCTGCTGCTGCAGCATTAGAAGAGGCCAATGCTACTGAATGTATAATAAGAAATTTAAGCATGTTTTCAGACCTTTGCTCTGTGTGTAAAGCCAAAAATCCTTTGCCAACCATAGACAAGTTTTTTACCATCTATGATGATGTCCTAAGATCAATCGCACTGGCTGAATCTGTTGCTAATAGTCACGATAACAGTATTCCAACATGTCAATCAAAGTCCATCTCTCTTTGGGTTGAAGCTGCTTTGGCCACTGATCTTCAGATAGTATCCCTTCTTACTGAAAATGACATAGATACTCCATCAGAACTTCAGAAAAGGCTGTCAAGACCACACTCTCTTAGCACATCTAAGAGTCAAGGAAATGGAATGAAAGAAACACTGGAGCTTGGAACAAGTTTACTGTCAGAAATGCAAATGTGGTTTCTACGCTTTGTTGAAGAATCCCTTGAAGCAGGATTTAAAGTGTTTGGAGAGAGTGCTAGTGGTGGGAAGAAAGCATTGCCTCTGGATGGTGGCTCCATTGCTATTGTTTTGTCACATTTGAAGCGAGTAAATGCATGGTTGGACCGCGTGGTTTCTAAAGGGAATCACTCATTGACAGATAAGATTGAGAAATTAAAGAGAAAAATCTATGGTTTTGTTATCCAGCATGTAGGATCAACTTTTGATAACAAAGCTTCCCCTGCTTCATCCTGA
Protein sequence

>Msa1213830

MASLTPGLILKLLQAMNTDTRVTGDHRSPLLQLIGIVPALSSSDLFSNEGFFLNLSDSLNSTYVLLSHPDTDLILNNRLQLGQFLYVDRFHFHTPLPSVTNIRPLPTRHPFVGTPEPLVARISPTTRHFTIQPLSDSDDPLSLYLSTNTTTAQSPIQNNQQKMSNVHSRQPLAPRDNLPTPKRFSSPATAKRSQSAGKFGKVSAERDPSPAGKMKRSSSPVPSKCVVPSLVSAREDNRKVSREAAIIVPSRYRQPSPTTARKQPSPNPRRASISPGRRLSGGIKFSPAVGDSTAKKKMVAGISKISDMLAGSAKTARKNWDEQNVEGEPKEKSVGSKTRVDSQSILRTQVSMTRRLSDVKSRKSDDNDSSSIDENTIDSSPQSCSEVEKSKFAGLGGITIHEKKWTDGSVPLDAVSGKLSRLGKDAMERKALASAAAAAALEEANATECIIRNLSMFSDLCSVCKAKNPLPTIDKFFTIYDDVLRSIALAESVANSHDNSIPTCQSKSISLWVEAALATDLQIVSLLTENDIDTPSELQKRLSRPHSLSTSKSQGNGMKETLELGTSLLSEMQMWFLRFVEESLEAGFKVFGESASGGKKALPLDGGSIAIVLSHLKRVNAWLDRVVSKGNHSLTDKIEKLKRKIYGFVIQHVGSTFDNKASPASS*