AlfalfaGEDB | Msa0716480

M. sativa cultivar zhongmu-4 / Msa0716480

KEGG: K19001
GO: GO:0000785 GO:0000786 GO:0003674 GO:0003678 GO:0003824 GO:0004003 GO:0004386 GO:0005575 GO:0005622 GO:0005623 GO:0005694 GO:0006139 GO:0006259 GO:0006325 GO:0006342 GO:0006344 GO:0006346 GO:0006349 GO:0006355 GO:0006725 GO:0006807 GO:0006996 GO:0008026 GO:0008094 GO:0008150 GO:0008152 GO:0009292 GO:0009294 GO:0009889 GO:0009890 GO:0009892 GO:0009893 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010604 GO:0010605 GO:0010629 GO:0010638 GO:0010639 GO:0016043 GO:0016458 GO:0016462 GO:0016569 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019219 GO:0019222 GO:0031056 GO:0031057 GO:0031058 GO:0031060 GO:0031062 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031399 GO:0031400 GO:0031401 GO:0032196 GO:0032197 GO:0032268 GO:0032269 GO:0032270 GO:0032392 GO:0032508 GO:0032991 GO:0032993 GO:0033043 GO:0033044 GO:0034641 GO:0035065 GO:0035067 GO:0040029 GO:0042623 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043412 GO:0044030 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044446 GO:0044464 GO:0044764 GO:0044815 GO:0045814 GO:0045892 GO:0045934 GO:0046483 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050789 GO:0050794 GO:0051052 GO:0051128 GO:0051129 GO:0051130 GO:0051171 GO:0051172 GO:0051173 GO:0051246 GO:0051247 GO:0051248 GO:0051252 GO:0051253 GO:0051276 GO:0051570 GO:0051574 GO:0051704 GO:0060255 GO:0065007 GO:0070035 GO:0071103 GO:0071514 GO:0071704 GO:0071840 GO:0080090 GO:0090239 GO:0090241 GO:0090304 GO:0140097 GO:1901360 GO:1901983 GO:1901984 GO:1902275 GO:1902679 GO:1903506 GO:1903507 GO:1905268 GO:1905269 GO:2000112 GO:2000113 GO:2000756 GO:2000757 GO:2001141 GO:2001251 GO:2001252
PFAM: PF00176.26

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0716480	XP_003611980.1	98.133	750	14	0	1	750	1	750	0.0	1520

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0716480	sp\|Q9XFH4\|DDM1_ARATH	71.182	753	192	10	11	750	24	764	0.0	1058

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0716480	G7KDI7	98.133	750	14	0	1	750	1	750	0.0	1520

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TFs/TRs:

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Gene ID	Type	Classification
Msa0716480	TR	SNF2

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0005020	Msa0716480	0.836706	7.995815e-57	-8.615850e-47
Msa0014770	Msa0716480	0.851128	1.085859e-60	-8.615850e-47
Msa0015570	Msa0716480	0.818883	1.553115e-52	-8.615850e-47
Msa0016040	Msa0716480	0.842786	2.090461e-58	-8.615850e-47
Msa0016530	Msa0716480	0.809607	1.740161e-50	-8.615850e-47
Msa0018920	Msa0716480	0.802353	5.840467e-49	-8.615850e-47
Msa0019930	Msa0716480	0.853040	3.106736e-61	-8.615850e-47
Msa0020540	Msa0716480	0.813829	2.099112e-51	-8.615850e-47
Msa0025160	Msa0716480	0.866988	1.904941e-65	-8.615850e-47
Msa0027280	Msa0716480	0.814454	1.528494e-51	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0716480	MtrunA17_Chr5g0403921	98.133	750	14	0	1	750	1	750	0.0	1520
Msa0716480	MtrunA17_Chr4g0066741	45.556	540	254	10	177	710	181	686	9.25e-153	472
Msa0716480	MtrunA17_Chr2g0286291	40.658	669	318	14	50	710	92	689	1.88e-150	466
Msa0716480	MtrunA17_Chr5g0394201	44.094	508	251	8	178	675	357	841	1.23e-136	430
Msa0716480	MtrunA17_Chr1g0205891	43.574	498	249	8	178	665	370	845	1.22e-131	417
Msa0716480	MtrunA17_Chr4g0066651	40.801	549	291	10	178	708	983	1515	2.19e-125	413
Msa0716480	MtrunA17_Chr3g0095091	40.360	555	292	12	179	712	566	1102	1.00e-116	386
Msa0716480	MtrunA17_Chr5g0442141	39.823	565	301	11	179	722	612	1158	2.43e-115	382
Msa0716480	MtrunA17_Chr3g0137091	37.521	589	325	9	152	719	256	822	3.89e-109	362
Msa0716480	MtrunA17_Chr7g0232121	37.333	525	294	12	184	683	39	553	1.54e-99	327

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0716480	AT5G66750.1	71.182	753	192	10	11	750	24	764	0.0	1058
Msa0716480	AT3G06400.3	40.208	674	328	13	45	710	81	687	1.63e-150	466
Msa0716480	AT3G06400.1	40.208	674	328	13	45	710	81	687	1.67e-150	466
Msa0716480	AT3G06400.2	40.208	674	328	13	45	710	81	687	2.07e-150	466
Msa0716480	AT5G18620.2	45.556	540	254	10	177	710	187	692	9.00e-150	465
Msa0716480	AT5G18620.1	45.556	540	254	10	177	710	187	692	9.13e-150	464
Msa0716480	AT5G19310.2	45.079	508	246	8	178	675	116	600	1.41e-140	433
Msa0716480	AT5G19310.1	45.079	508	246	8	178	675	380	864	1.31e-137	432
Msa0716480	AT3G06010.1	43.701	508	254	8	178	675	397	882	4.16e-133	422
Msa0716480	AT2G28290.5	41.959	541	281	11	179	708	750	1268	5.18e-125	413

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Find 183 sgRNAs with CRISPR-Local

Find 439 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGGGTTTCGAAGTTTGC+AGG	0.409783	5_1:+9907198	Msa0716480:CDS
AAACATATGCCTAGAACAGT+TGG	0.561393	5_1:+9905043	Msa0716480:CDS
AAACCTCCATTTCATCCATA+AGG	0.417476	5_1:-9908437	None:intergenic
AAAGAACTGAGAAAGAGCAG+AGG	0.631747	5_1:+9904613	Msa0716480:CDS
AAATGTGAAGACTGAGGATG+TGG	0.530087	5_1:+9904575	Msa0716480:CDS
AACCTCCATTTCATCCATAA+GGG	0.465902	5_1:-9908436	None:intergenic
AACTGTGAATCATTCAGATT+CGG	0.441376	5_1:-9903736	None:intergenic
AACTTCAGTCCTAGAAGAAG+AGG	0.548276	5_1:+9903444	Msa0716480:CDS
AAGAAAGATTCTGCAGTTGC+TGG	0.373653	5_1:-9907963	None:intergenic
AAGAACTGAGAAAGAGCAGA+GGG	0.591530	5_1:+9904614	Msa0716480:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAGAAGAGAAAATGAGATTC+TGG	-	chr5_1:9903260-9903279	None:intergenic	30.0%
AACTGTGAATCATTCAGATT+CGG	-	chr5_1:9903739-9903758	None:intergenic	30.0%
CCGGAATATTAGAAACTATT+AGG	+	chr5_1:9903889-9903908	Msa0716480:intron	30.0%
TGATTTCGAAATTCATGAGT+TGG	+	chr5_1:9903914-9903933	Msa0716480:intron	30.0%
TAATTTGATCCATGTGTTTC+TGG	+	chr5_1:9903971-9903990	Msa0716480:intron	30.0%
ATAACAAAACCAACAACCTA+AGG	-	chr5_1:9904115-9904134	None:intergenic	30.0%
TAAACTGGTTGCAAAAAAGA+AGG	+	chr5_1:9904199-9904218	Msa0716480:CDS	30.0%
AAACTGGTTGCAAAAAAGAA+GGG	+	chr5_1:9904200-9904219	Msa0716480:CDS	30.0%
TAGTGAAAGATGTAAGTTTG+AGG	+	chr5_1:9904354-9904373	Msa0716480:intron	30.0%
ATAACAAATTCACAGGAGTT+AGG	-	chr5_1:9904446-9904465	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr5_1	gene	9903186	9909525	9903186	ID=Msa0716480;Name=Msa0716480
chr5_1	mRNA	9903186	9909525	9903186	ID=Msa0716480-mRNA-1;Parent=Msa0716480;Name=Msa0716480-mRNA-1;_AED=0.10;_eAED=0.10;_QI=105\|1\|1\|1\|0.93\|0.87\|16\|361\|750
chr5_1	exon	9903186	9903280	9903186	ID=Msa0716480-mRNA-1:exon:3982;Parent=Msa0716480-mRNA-1
chr5_1	exon	9903384	9903465	9903384	ID=Msa0716480-mRNA-1:exon:3983;Parent=Msa0716480-mRNA-1
chr5_1	exon	9903601	9903837	9903601	ID=Msa0716480-mRNA-1:exon:3984;Parent=Msa0716480-mRNA-1
chr5_1	exon	9904161	9904262	9904161	ID=Msa0716480-mRNA-1:exon:3985;Parent=Msa0716480-mRNA-1
chr5_1	exon	9904528	9904874	9904528	ID=Msa0716480-mRNA-1:exon:3986;Parent=Msa0716480-mRNA-1
chr5_1	exon	9904976	9905165	9904976	ID=Msa0716480-mRNA-1:exon:3987;Parent=Msa0716480-mRNA-1
chr5_1	exon	9905281	9905456	9905281	ID=Msa0716480-mRNA-1:exon:3988;Parent=Msa0716480-mRNA-1
chr5_1	exon	9906196	9906265	9906196	ID=Msa0716480-mRNA-1:exon:3989;Parent=Msa0716480-mRNA-1
chr5_1	exon	9906352	9906541	9906352	ID=Msa0716480-mRNA-1:exon:3990;Parent=Msa0716480-mRNA-1
chr5_1	exon	9906666	9906758	9906666	ID=Msa0716480-mRNA-1:exon:3991;Parent=Msa0716480-mRNA-1
chr5_1	exon	9906951	9907045	9906951	ID=Msa0716480-mRNA-1:exon:3992;Parent=Msa0716480-mRNA-1
chr5_1	exon	9907140	9907259	9907140	ID=Msa0716480-mRNA-1:exon:3993;Parent=Msa0716480-mRNA-1
chr5_1	exon	9907941	9908060	9907941	ID=Msa0716480-mRNA-1:exon:3994;Parent=Msa0716480-mRNA-1
chr5_1	exon	9908149	9908247	9908149	ID=Msa0716480-mRNA-1:exon:3995;Parent=Msa0716480-mRNA-1
chr5_1	exon	9908345	9908455	9908345	ID=Msa0716480-mRNA-1:exon:3996;Parent=Msa0716480-mRNA-1
chr5_1	exon	9908934	9909525	9908934	ID=Msa0716480-mRNA-1:exon:3997;Parent=Msa0716480-mRNA-1
chr5_1	five_prime_UTR	9903186	9903280	9903186	ID=Msa0716480-mRNA-1:five_prime_utr;Parent=Msa0716480-mRNA-1
chr5_1	five_prime_UTR	9903384	9903393	9903384	ID=Msa0716480-mRNA-1:five_prime_utr;Parent=Msa0716480-mRNA-1
chr5_1	CDS	9903394	9903465	9903394	ID=Msa0716480-mRNA-1:cds;Parent=Msa0716480-mRNA-1
chr5_1	CDS	9903601	9903837	9903601	ID=Msa0716480-mRNA-1:cds;Parent=Msa0716480-mRNA-1
chr5_1	CDS	9904161	9904262	9904161	ID=Msa0716480-mRNA-1:cds;Parent=Msa0716480-mRNA-1
chr5_1	CDS	9904528	9904874	9904528	ID=Msa0716480-mRNA-1:cds;Parent=Msa0716480-mRNA-1
chr5_1	CDS	9904976	9905165	9904976	ID=Msa0716480-mRNA-1:cds;Parent=Msa0716480-mRNA-1
chr5_1	CDS	9905281	9905456	9905281	ID=Msa0716480-mRNA-1:cds;Parent=Msa0716480-mRNA-1
chr5_1	CDS	9906196	9906265	9906196	ID=Msa0716480-mRNA-1:cds;Parent=Msa0716480-mRNA-1
chr5_1	CDS	9906352	9906541	9906352	ID=Msa0716480-mRNA-1:cds;Parent=Msa0716480-mRNA-1
chr5_1	CDS	9906666	9906758	9906666	ID=Msa0716480-mRNA-1:cds;Parent=Msa0716480-mRNA-1
chr5_1	CDS	9906951	9907045	9906951	ID=Msa0716480-mRNA-1:cds;Parent=Msa0716480-mRNA-1
chr5_1	CDS	9907140	9907259	9907140	ID=Msa0716480-mRNA-1:cds;Parent=Msa0716480-mRNA-1
chr5_1	CDS	9907941	9908060	9907941	ID=Msa0716480-mRNA-1:cds;Parent=Msa0716480-mRNA-1
chr5_1	CDS	9908149	9908247	9908149	ID=Msa0716480-mRNA-1:cds;Parent=Msa0716480-mRNA-1
chr5_1	CDS	9908345	9908455	9908345	ID=Msa0716480-mRNA-1:cds;Parent=Msa0716480-mRNA-1
chr5_1	CDS	9908934	9909164	9908934	ID=Msa0716480-mRNA-1:cds;Parent=Msa0716480-mRNA-1
chr5_1	three_prime_UTR	9909165	9909525	9909165	ID=Msa0716480-mRNA-1:three_prime_utr;Parent=Msa0716480-mRNA-1

Gene Sequence

>Msa0716480

ATGGATTCCAAGAACAATGTGAAGAACGACGATCCTGCAGTGGAATCACCAACTTCAGTCCTAGAAGAAGAGGAAGTGGAGGTGAAATCGGAGGAAGAGGTGATTGCAGATGATGTGTCATCGCTTGTACCGAAAACAATGGCTGAGGAAGAAGAGAAGTTGCTGAAAGCTCGTGCAAAGGAAGAAGAGGAAAAGATTGAAGTTGCGCCGAATCTGAATGATTCACAGTTTAATAAGTTGGATGAGCTTTTGACACAGACTAAACTCTACTCAGAGTTTCTTTTGGAGAAAATGGATGATATTACAATGGCTGCGGGTGAACAAGAGAAACCGGATGAAGAAGAGAGTAAACTGGTTGCAAAAAAGAAGGGCCGTGGATCAAAAAGAAAGGCAGCCTCACAATGCAATACTGGAAAAGCCAAAAAGGCAGTTGAAGCCATGATTACAAGATCTAAAGAAAATGTGAAGACTGAGGATGTGGATTTGACCGAGGAAGAAAGAACTGAGAAAGAGCAGAGGGAGCTGATGCCTTTACTAACTGGTGGAAAATTGAAATCTTATCAACTGAAGGGTGTTAAGTGGTTGATTTCCTTGTGGCAAAATGGATTGAATGGGATTCTTGCTGATCAAATGGGTCTTGGGAAGACAATCCAAACAATTGGGTTTCTTTCTCATCTAAAATCGAAAGGATTGGATGGGCCATATATGATAATTGCTCCTCTATCAACCCTCTCCAATTGGATGAATGAGATTAATAGGTTTACACCAACGCTCCCTGCTGTTATCTACCATGGTAACAAATATCAGAGAGATGAAATCAGAAGGAAACATATGCCTAGAACAGTTGGCCCAAAATTCCCTCTAGTAATAACTTCTTATGAGATTGCTATGAATGATGCTAAGAAGTGTTTAAGGTCATACAGTTGGAAGTATCTTGTTGTTGATGAGGGACACAGGCTGAAAAATGCCAACTGCAAATTAGTGAGGATGTTGAAATACATCAGTGTTGAAAATAAGCTTCTTTTGACTGGTACACCGCTCCAGAATAACTTGGCTGAGCTATGGTCACTGCTGCACTTCATCTTACCTGATATATTCTCATCTCTTGAAGAATTTGAGTCATGGTTTAACCTGTCGGGAAAGAGCACTACTGGAGCAACAATGGAAGAGTTGGAAGAGAAAAGAAGAACCCAAGTTGTGGCCAAGCTTCATTCAATTCTTAGGCCATTTCTGTTGCGTAGGATGAAGTCTGATGTTGAGCTAATGTTGCCACGGAAAAAAGAGATCATTGTTTATGCCAACATGACTGAGCATCAGAAGAACTTGCAGGATCATTTAATTAATGAGACACTGGAGAAATATTTGGACAAGAAACGATCAGTTGGACGTGCTCCAACAAGTCTTAATAATTTGGTTATTCAGCTAAGAAAAGTCTGTAACCATCCTGACCTCTTAGAATCAGTCTTTGATGGTTCATATTTTTATCCTCCTGTGAATGAGATAATTGAAAAATGTGGAAAATTTCAATTGCTCGACCGATTGCTGGAGCGGCTATTTGCACGGAATCACAAGGTTCTGATCTTCAGTCAGTGGACCAAAGTGCTAGATATAATGGATTATTATTTTAGTGAAAAGGGTTTCGAAGTTTGCAGGATTGATGGTTCGGTGAAGCTGGATGATAGGAAACGGCAGATCCAGGACTTCAATGATACAACCAGCAACTGCAGAATCTTTCTTCTTTCCACCAGGGCTGGTGGGTTGGGAATAAACCTCACTGCAGCTGACACTTGTATTCTTTATGACAGTGACTGGAATCCTCAAATGGATTTACAGGCCATGGATAGATGTCACAGAATCGGTCAAACAAAGCCTGTTCATGTTTACAGGCTCGCTACTGCACAATCAGTAGAGGGTCGGATGTTGAAAAGAGCTTTCAGCAAGTTGAAGCTTGAGCATGTGGTGATAGAGAAAGGACAATTTCATCAGGAGCGCACAAAGCCTTCCCTTATGGATGAAATGGAGGAAGAGGATGTTTTGGCATTGCTTCGAGATGAAGAAACCGCTGAGGACAAAATGATACAGAAAGATATTAGTGATGAAGACCTGGAGAAGCTCTTGGATCGCAGCGATCTTGTTATCAATAGCTCAACTGATGATAAAGCTGCAGTTAGTACCTTTTCTCTTAAAGGGCCTGGATGGGAAGTGGTGATGCCAACTGCGGCAGGGGGCATGCTTTCCACTCTCAACAGCTAA

Protein sequence

>Msa0716480

MDSKNNVKNDDPAVESPTSVLEEEEVEVKSEEEVIADDVSSLVPKTMAEEEEKLLKARAKEEEEKIEVAPNLNDSQFNKLDELLTQTKLYSEFLLEKMDDITMAAGEQEKPDEEESKLVAKKKGRGSKRKAASQCNTGKAKKAVEAMITRSKENVKTEDVDLTEEERTEKEQRELMPLLTGGKLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIGFLSHLKSKGLDGPYMIIAPLSTLSNWMNEINRFTPTLPAVIYHGNKYQRDEIRRKHMPRTVGPKFPLVITSYEIAMNDAKKCLRSYSWKYLVVDEGHRLKNANCKLVRMLKYISVENKLLLTGTPLQNNLAELWSLLHFILPDIFSSLEEFESWFNLSGKSTTGATMEELEEKRRTQVVAKLHSILRPFLLRRMKSDVELMLPRKKEIIVYANMTEHQKNLQDHLINETLEKYLDKKRSVGRAPTSLNNLVIQLRKVCNHPDLLESVFDGSYFYPPVNEIIEKCGKFQLLDRLLERLFARNHKVLIFSQWTKVLDIMDYYFSEKGFEVCRIDGSVKLDDRKRQIQDFNDTTSNCRIFLLSTRAGGLGINLTAADTCILYDSDWNPQMDLQAMDRCHRIGQTKPVHVYRLATAQSVEGRMLKRAFSKLKLEHVVIEKGQFHQERTKPSLMDEMEEEDVLALLRDEETAEDKMIQKDISDEDLEKLLDRSDLVINSSTDDKAAVSTFSLKGPGWEVVMPTAAGGMLSTLNS*