AlfalfaGEDB | Msa0370920

M. sativa cultivar zhongmu-4 / Msa0370920

KEGG: K08867
GO: GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0035556 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0140096 GO:1901564
PFAM: PF00069.28

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0370920	CAC84087.1	97.293	591	7	1	1	582	1	591	0.0	1184

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0370920	sp\|Q65X23\|WNK2_ORYSJ	54.240	625	223	11	1	576	1	611	0.0	605

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0370920	Q84RS1	97.293	591	7	1	1	582	1	591	0.0	1184

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0017510	Msa0370920	0.813402	2.607061e-51	-8.615850e-47
Msa0157290	Msa0370920	0.814177	1.759799e-51	-8.615850e-47
Msa0200260	Msa0370920	0.806190	9.278802e-50	-8.615850e-47
Msa0222700	Msa0370920	0.805795	1.123283e-49	-8.615850e-47
Msa0264040	Msa0370920	0.806813	6.854588e-50	-8.615850e-47
Msa0339320	Msa0370920	0.800691	1.279860e-48	-8.615850e-47
Msa0370920	Msa0376350	0.806670	7.350420e-50	-8.615850e-47
Msa0370920	Msa0428590	0.817235	3.662618e-52	-8.615850e-47
Msa0370920	Msa0464970	0.986700	1.132210e-167	-8.615850e-47
Msa0370920	Msa0516170	0.802900	4.504455e-49	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0370920	MtrunA17_Chr3g0116811	95.431	591	18	1	1	582	1	591	0.0	1163
Msa0370920	MtrunA17_Chr7g0273851	55.508	472	153	8	13	431	11	478	3.71e-171	503
Msa0370920	MtrunA17_Chr1g0205471	49.301	572	203	15	13	530	11	549	3.82e-167	492
Msa0370920	MtrunA17_Chr1g0190951	58.178	428	132	7	13	394	11	437	3.42e-166	491
Msa0370920	MtrunA17_Chr8g0384001	51.370	438	165	6	12	402	14	450	2.46e-155	459
Msa0370920	MtrunA17_Chr8g0346511	57.143	420	145	4	11	396	23	441	2.57e-153	455
Msa0370920	MtrunA17_Chr3g0119911	55.353	439	144	6	13	408	7	436	1.47e-152	451
Msa0370920	MtrunA17_Chr3g0129771	51.826	438	163	5	12	402	19	455	5.19e-152	451
Msa0370920	MtrunA17_Chr7g0244601	55.013	389	155	4	16	394	18	396	1.08e-144	431
Msa0370920	MtrunA17_Chr5g0432541	53.964	391	163	5	13	393	14	397	6.25e-142	423

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0370920	AT3G48260.1	54.949	586	177	12	7	581	3	512	0.0	584
Msa0370920	AT3G48260.2	54.175	491	147	11	93	581	3	417	6.16e-165	476
Msa0370920	AT3G04910.1	55.292	463	128	8	11	396	8	468	1.52e-164	486
Msa0370920	AT3G04910.2	56.481	432	119	6	32	396	16	445	2.94e-159	471
Msa0370920	AT3G18750.1	52.489	442	166	5	4	402	6	446	7.22e-157	461
Msa0370920	AT3G18750.3	52.489	442	166	5	4	402	6	446	7.22e-157	461
Msa0370920	AT3G18750.5	52.489	442	166	5	4	402	6	446	7.22e-157	461
Msa0370920	AT1G49160.2	55.059	425	148	6	12	394	14	437	9.18e-157	461
Msa0370920	AT5G28080.2	54.186	430	148	5	14	395	13	441	9.66e-157	458
Msa0370920	AT3G22420.1	56.511	407	146	7	16	394	14	417	1.91e-154	455

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Find 160 sgRNAs with CRISPR-Local

Find 280 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGCCCTCAACTCCACCAA+CGG	0.622008	3_1:-68850965	None:intergenic
AAAGTGTACTGCTCATGTAA+CGG	0.602588	3_1:+68849320	Msa0370920:CDS
AAATAATCCGCAAAGAGAAC+CGG	0.410648	3_1:-68851005	None:intergenic
AACAAAGCTGGAAACTTTGT+TGG	0.390427	3_1:+68850303	Msa0370920:CDS
AACGATAATTCTGCTGAGAC+GGG	0.524495	3_1:+68849556	Msa0370920:CDS
AACGGAACGGTTGCCTGCAA+AGG	0.561907	3_1:+68849338	Msa0370920:CDS
AACTTTGATAATCAATCCAT+TGG	0.446683	3_1:+68849523	Msa0370920:CDS
AAGCCTCAGGCATAGTTTCA+AGG	0.490334	3_1:-68849949	None:intergenic
AAGTATATTTACCTGATTGC+TGG	0.370798	3_1:-68849434	None:intergenic
AATAATCCGCAAAGAGAACC+GGG	0.568357	3_1:-68851004	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TTTCTCAATTTCACAGTACA+AGG	+	chr3_1:68847140-68847159	Msa0370920:intron	30.0%
TCCGGTATCTAAATTAAGAA+AGG	-	chr3_1:68847665-68847684	None:intergenic	30.0%
TATGACTATGAAGATACGAA+AGG	-	chr3_1:68847749-68847768	None:intergenic	30.0%
TGTTGAGACAATATTACTTG+TGG	+	chr3_1:68848184-68848203	Msa0370920:intron	30.0%
TGTACTATCCAAATTCCAAA+GGG	-	chr3_1:68848318-68848337	None:intergenic	30.0%
ATGTACTATCCAAATTCCAA+AGG	-	chr3_1:68848319-68848338	None:intergenic	30.0%
GAAAAAATTGGTGAATTTGC+AGG	+	chr3_1:68848624-68848643	Msa0370920:intron	30.0%
CTCAAGCAATTTCATACATA+AGG	-	chr3_1:68848781-68848800	None:intergenic	30.0%
TGACAATGATAGAAGATGAT+AGG	-	chr3_1:68849208-68849227	None:intergenic	30.0%
AGTATATTTACCTGATTGCT+GGG	-	chr3_1:68849436-68849455	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3_1	gene	68846934	68851167	68846934	ID=Msa0370920;Name=Msa0370920
chr3_1	mRNA	68846934	68851167	68846934	ID=Msa0370920-mRNA-1;Parent=Msa0370920;Name=Msa0370920-mRNA-1;_AED=0.10;_eAED=0.10;_QI=0\|0.85\|0.75\|1\|0.85\|0.75\|8\|431\|582
chr3_1	exon	68846934	68847009	68846934	ID=Msa0370920-mRNA-1:exon:14531;Parent=Msa0370920-mRNA-1
chr3_1	exon	68847319	68847562	68847319	ID=Msa0370920-mRNA-1:exon:14532;Parent=Msa0370920-mRNA-1
chr3_1	exon	68847677	68847900	68847677	ID=Msa0370920-mRNA-1:exon:14533;Parent=Msa0370920-mRNA-1
chr3_1	exon	68848005	68848162	68848005	ID=Msa0370920-mRNA-1:exon:14534;Parent=Msa0370920-mRNA-1
chr3_1	exon	68849261	68849444	68849261	ID=Msa0370920-mRNA-1:exon:14535;Parent=Msa0370920-mRNA-1
chr3_1	exon	68849518	68849655	68849518	ID=Msa0370920-mRNA-1:exon:14536;Parent=Msa0370920-mRNA-1
chr3_1	exon	68849741	68850466	68849741	ID=Msa0370920-mRNA-1:exon:14537;Parent=Msa0370920-mRNA-1
chr3_1	exon	68850738	68851167	68850738	ID=Msa0370920-mRNA-1:exon:14538;Parent=Msa0370920-mRNA-1
chr3_1	CDS	68846934	68847009	68846934	ID=Msa0370920-mRNA-1:cds;Parent=Msa0370920-mRNA-1
chr3_1	CDS	68847319	68847562	68847319	ID=Msa0370920-mRNA-1:cds;Parent=Msa0370920-mRNA-1
chr3_1	CDS	68847677	68847900	68847677	ID=Msa0370920-mRNA-1:cds;Parent=Msa0370920-mRNA-1
chr3_1	CDS	68848005	68848162	68848005	ID=Msa0370920-mRNA-1:cds;Parent=Msa0370920-mRNA-1
chr3_1	CDS	68849261	68849444	68849261	ID=Msa0370920-mRNA-1:cds;Parent=Msa0370920-mRNA-1
chr3_1	CDS	68849518	68849655	68849518	ID=Msa0370920-mRNA-1:cds;Parent=Msa0370920-mRNA-1
chr3_1	CDS	68849741	68850465	68849741	ID=Msa0370920-mRNA-1:cds;Parent=Msa0370920-mRNA-1
chr3_1	three_prime_UTR	68850466	68850466	68850466	ID=Msa0370920-mRNA-1:three_prime_utr;Parent=Msa0370920-mRNA-1
chr3_1	three_prime_UTR	68850738	68851167	68850738	ID=Msa0370920-mRNA-1:three_prime_utr;Parent=Msa0370920-mRNA-1

Gene Sequence

>Msa0370920

ATGCCGCCGGATTCCGCCGAACAAGACGATGATCCCGATACCGAGTTCGCCGAAATTGATCCCACCGGTCGTTATGTAATTTGGAAATGTAGATATAGAGCTTTCGATGAGTTGGAGGGAATTGAAGTGGCTTGGAATCAGGTTAAGGTGTCTGATTTATTGCGAAATTCTGAAGATTTGGAGCGTCTTTATTCTGAAGTTCATTTGCTCAAGACTTTGAAGCACAAGAATATTATTAAATTTTATAATTCATGGGTTGATACAAAGAATGAGAATATTAATTTCATTACTGAAATTTTTACATCCGGAACTTTGCGCCAATACCGGAAGAAACATAAGCATGTTGACTTGAGAGCGTTGAAGAAATGGTCTAGGCAGATTTTGGAGGGCCTTTCGTATCTTCATAGTCATAATCCACCGGTTATTCATCGAGACCTTAAGTGTGACAATATTTTTGTCAACGGGAATCAAGGGGAGGTGAAAATTGGTGATTTAGGATTGGCAGCTATTCTTCAACAAGCCACTTCAGCTCACAGTGTTATAGGTACACCGGAGTTTATGGCCCCAGAACTTTATGAAGAGGAGTACAATGAGCTTGTTGACATATATGCTTTTGGCATGTGCTTGCTAGAGTTGGTAACTGTTGAGTACCCGTATGTTGAATGTGCCAATGCTGCTCAAATATACAAGAAAGTGACATCTGGAATAAAGCCAGCATCATTGGCAAAAGTAAATGATCCTGAAGTTAAAGCATTTATAGAAAAGTGTACTGCTCATGTAACGGAACGGTTGCCTGCAAAGGCTCTCTTGATGGATCCCTTCCTTCAGTCAGATTGGGATGGTGACAGCGTCGGTCGATCTTCGAGATCTAGAACCCAGCAATCAGGAAATAACTTTGATAATCAATCCATTGGAAAAAGTGCCAACGATAATTCTGCTGAGACGGGTAGGGAATTCACAGTGGAAGGCCAGAGAAGAGATGTTAATACAATATTTTTAAAACTGAGAATTGCAGATTCCTCAGGCCATATTCGAAATATCCACTTTCCTTTCGATATTGAAGCAGACACTTCAATCTCTGTTGCCAGTGAAATGGTTGAGGAGTTGGAGCTTACTGATCAAGATGTTTCGACTATTGCTATGACGATTGACTCCGAAATTCGATACCACATTCCTAATTGGAATCCCATTGAAACTCTTGACAATAGTTCTTGTCAAGATTCAGGTCATACCCTTGAAACTATGCCTGAGGCTTCTCCTATGGGAAATGAATCTCCTGGCAGTCTTGCTTTGGAAATATTACCTTCAGGTCGCAAGTACTGGTCAGACTCACCTAAGGGGGTTGGTGGAAACTCTCCATGTCTGCACGCTGCTTCAAACTTGTCTTATGAAGGGGATGTGATTGCTGAGGAAGGCAGCCTCTTTGCAAATAGCACGGGGAAGGAATGTGATGGGACTGCTGATTCCCCTTCCAACGAAAAAAGTATTACATCAGACTGTTCTGAAGCAACCGGTGGAATGTCCTCTCAAGAAGAAATATCTGTAAGTTTGAAAGATTCTGAAACAGAAGACATCAATAAAATAGCAACAAAGCTGGAAACTTTGTTGGTTATGCAACAAGATGAGTTAGACGAACTGAAGAGGAAGCACAAATTAGCTGTCTCGGATTTTTTGAATGAATTTTCTCCAGAAATTTCCTTACAGGTTCTAAATATGTGCAACCTGCAGATGCCTGACGGTGAAATGTAG

Protein sequence

>Msa0370920

MPPDSAEQDDDPDTEFAEIDPTGRYVIWKCRYRAFDELEGIEVAWNQVKVSDLLRNSEDLERLYSEVHLLKTLKHKNIIKFYNSWVDTKNENINFITEIFTSGTLRQYRKKHKHVDLRALKKWSRQILEGLSYLHSHNPPVIHRDLKCDNIFVNGNQGEVKIGDLGLAAILQQATSAHSVIGTPEFMAPELYEEEYNELVDIYAFGMCLLELVTVEYPYVECANAAQIYKKVTSGIKPASLAKVNDPEVKAFIEKCTAHVTERLPAKALLMDPFLQSDWDGDSVGRSSRSRTQQSGNNFDNQSIGKSANDNSAETGREFTVEGQRRDVNTIFLKLRIADSSGHIRNIHFPFDIEADTSISVASEMVEELELTDQDVSTIAMTIDSEIRYHIPNWNPIETLDNSSCQDSGHTLETMPEASPMGNESPGSLALEILPSGRKYWSDSPKGVGGNSPCLHAASNLSYEGDVIAEEGSLFANSTGKECDGTADSPSNEKSITSDCSEATGGMSSQEEISVSLKDSETEDINKIATKLETLLVMQQDELDELKRKHKLAVSDFLNEFSPEISLQVLNMCNLQMPDGEM*