Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0373370 | XP_003601802.1 | 96.767 | 464 | 12 | 1 | 1 | 464 | 1 | 461 | 0.0 | 922 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0373370 | sp|Q4V399|RSGA1_ARATH | 69.606 | 431 | 120 | 5 | 47 | 470 | 1 | 427 | 0.0 | 600 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0373370 | G7JC10 | 96.767 | 464 | 12 | 1 | 1 | 464 | 1 | 461 | 0.0 | 922 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0000610 | Msa0373370 | 0.802972 | 4.353190e-49 | -8.615850e-47 |
| Msa0011920 | Msa0373370 | 0.837099 | 6.345955e-57 | -8.615850e-47 |
| Msa0373370 | Msa0421930 | 0.954302 | 4.016897e-112 | -8.615850e-47 |
| Msa0373370 | Msa0514340 | 0.956225 | 4.866609e-114 | -8.615850e-47 |
| Msa0373370 | Msa0617470 | 0.813899 | 2.026400e-51 | -8.615850e-47 |
| Msa0373370 | Msa0621670 | 0.805557 | 1.260040e-49 | -8.615850e-47 |
| Msa0373370 | Msa0700250 | 0.812200 | 4.778717e-51 | -8.615850e-47 |
| Msa0373370 | Msa1215490 | 0.800501 | 1.399391e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0373370 | MtrunA17_Chr3g0122661 | 96.767 | 464 | 12 | 1 | 1 | 464 | 1 | 461 | 0.0 | 922 |
| Msa0373370 | MtrunA17_Chr3g0122691 | 90.909 | 66 | 6 | 0 | 286 | 351 | 32 | 97 | 5.35e-35 | 126 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0373370 | AT1G67440.2 | 65.164 | 488 | 148 | 9 | 1 | 470 | 1 | 484 | 0.0 | 612 |
| Msa0373370 | AT1G67440.1 | 69.606 | 431 | 120 | 5 | 47 | 470 | 1 | 427 | 0.0 | 600 |
| Msa0373370 | AT1G67460.2 | 58.943 | 246 | 89 | 3 | 28 | 270 | 35 | 271 | 2.07e-91 | 280 |
| Msa0373370 | AT1G67460.1 | 58.943 | 246 | 89 | 3 | 28 | 270 | 35 | 271 | 2.07e-91 | 280 |
Find 163 sgRNAs with CRISPR-Local
Find 259 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCCTTTCGGCTTGTATCTC+TGG | 0.155494 | 3_1:-72376384 | Msa0373370:three_prime_UTR |
| CATTCCTCAAAGCATTTAAA+AGG | 0.170873 | 3_1:+72376455 | None:intergenic |
| GTCTCTCTGCTTCCATTATC+TGG | 0.207671 | 3_1:-72377376 | Msa0373370:CDS |
| TTGCTTGGAGCTTCGTGTTT+AGG | 0.223906 | 3_1:+72379325 | None:intergenic |
| AAGTACGAGGATTGCTTCTA+AGG | 0.236404 | 3_1:+72377607 | None:intergenic |
| GACGATTACGCGCATGAAAT+TGG | 0.238913 | 3_1:+72379180 | None:intergenic |
| TGCTTGGAGCTTCGTGTTTA+GGG | 0.240644 | 3_1:+72379326 | None:intergenic |
| GAGCTTCGTGTTTAGGGTTT+TGG | 0.260240 | 3_1:+72379332 | None:intergenic |
| TCAAATAATATAGTTGGATT+TGG | 0.270741 | 3_1:+72376154 | None:intergenic |
| AATATTTACAATCAGTATAA+TGG | 0.281341 | 3_1:+72376406 | None:intergenic |
| TTCTAGTAGGTTCTGTTGAT+TGG | 0.284638 | 3_1:-72379039 | Msa0373370:CDS |
| GAAGGCTAGGTTTCGTGGTT+GGG | 0.290326 | 3_1:-72377757 | Msa0373370:CDS |
| TTGCCAAGTTAAACGACATT+TGG | 0.294470 | 3_1:+72379615 | None:intergenic |
| GAAGATTCGGATTGAACTAA+TGG | 0.321003 | 3_1:+72376327 | None:intergenic |
| ACCACGAAACCTAGCCTTCC+AGG | 0.329881 | 3_1:+72377761 | None:intergenic |
| GGGAACTCACTTGACCCTAA+TGG | 0.330772 | 3_1:+72376348 | None:intergenic |
| ATATTTACAATCAGTATAAT+GGG | 0.337996 | 3_1:+72376407 | None:intergenic |
| CTGTTGTTTGATCTCTCAAT+TGG | 0.349084 | 3_1:+72377676 | None:intergenic |
| TTGGTTGAAGCTGAGTCAAC+TGG | 0.350029 | 3_1:-72378875 | Msa0373370:CDS |
| CAGGTTAAAGACAGGAGATA+TGG | 0.352026 | 3_1:-72376606 | Msa0373370:CDS |
| GGGTCAAGTGAGTTCCCATT+AGG | 0.352346 | 3_1:-72376363 | Msa0373370:three_prime_UTR |
| GAAGATAAAGCGTAGGGTTA+TGG | 0.354514 | 3_1:-72379074 | Msa0373370:CDS |
| CATTAACAAACACACCGTTC+TGG | 0.354718 | 3_1:-72376263 | Msa0373370:three_prime_UTR |
| CGGTGGCCACCGTGCGGTGG+TGG | 0.354820 | 3_1:+72379407 | None:intergenic |
| GAGTTCCAATTGAGGACATT+TGG | 0.366085 | 3_1:-72377027 | Msa0373370:CDS |
| GGAACTCACTTGACCCTAAT+GGG | 0.366995 | 3_1:+72376349 | None:intergenic |
| TTGTATAGACCATGGATTCC+TGG | 0.371995 | 3_1:-72377779 | Msa0373370:intron |
| CGGCGGTGGCCACCGTGCGG+TGG | 0.373264 | 3_1:+72379404 | None:intergenic |
| TCTAGTAGGTTCTGTTGATT+GGG | 0.376109 | 3_1:-72379038 | Msa0373370:CDS |
| ATCGTCCAACCACAACCTTC+CGG | 0.379236 | 3_1:-72379163 | Msa0373370:CDS |
| TTTGGTTTCTGGCGGAGATT+TGG | 0.382003 | 3_1:+72379350 | None:intergenic |
| ATTTCTTCGCGGGAGAGAAT+TGG | 0.383994 | 3_1:+72379253 | None:intergenic |
| TGCTTGCATCTTGGTGAACC+TGG | 0.385315 | 3_1:-72377123 | Msa0373370:CDS |
| TGCCAAGTTAAACGACATTT+GGG | 0.388462 | 3_1:+72379616 | None:intergenic |
| GGAAGGCTAGGTTTCGTGGT+TGG | 0.394699 | 3_1:-72377758 | Msa0373370:CDS |
| TCCTTTCGGCTTGTATCTCT+GGG | 0.396799 | 3_1:-72376383 | Msa0373370:three_prime_UTR |
| GACGCCGACGGCTTGGGATT+CGG | 0.396813 | 3_1:+72379219 | None:intergenic |
| CAAGATCATCTAAAATTGAT+TGG | 0.398920 | 3_1:+72376516 | None:intergenic |
| GAGAAGTCGAGGGGCGGCGG+TGG | 0.404217 | 3_1:+72379390 | None:intergenic |
| CTGTTGATTGGGTTGATCGT+AGG | 0.406397 | 3_1:-72379027 | Msa0373370:CDS |
| TACCCAAATGTCGTTTAACT+TGG | 0.408337 | 3_1:-72379618 | Msa0373370:five_prime_UTR |
| AACCTTGAGTTCAATCTACT+TGG | 0.408943 | 3_1:+72379643 | None:intergenic |
| AGAAGCGTCGTGGAAGGTTC+CGG | 0.409571 | 3_1:+72379144 | None:intergenic |
| AAGCGACGACGCCGACGGCT+TGG | 0.411672 | 3_1:+72379212 | None:intergenic |
| TAGTTCCAAATGTCCTCAAT+TGG | 0.413031 | 3_1:+72377022 | None:intergenic |
| TTTAACAATTGCTTGCATCT+TGG | 0.420825 | 3_1:-72377132 | Msa0373370:CDS |
| TGATTGTAAATATTTCCTTT+CGG | 0.421482 | 3_1:-72376397 | Msa0373370:three_prime_UTR |
| ATTCCTCAAAGCATTTAAAA+GGG | 0.424975 | 3_1:+72376456 | None:intergenic |
| GGCTTGGGATTCGGAGAGAG+GGG | 0.435674 | 3_1:+72379228 | None:intergenic |
| TAGGGTTATGGTTGGAGATA+AGG | 0.435965 | 3_1:-72379062 | Msa0373370:CDS |
| GGTTATCTTGCTGATACTCC+TGG | 0.436211 | 3_1:-72377349 | Msa0373370:CDS |
| TTCCACGACGCTTCTTCCTC+CGG | 0.440838 | 3_1:-72379136 | Msa0373370:CDS |
| GCTTGGGATTCGGAGAGAGG+GGG | 0.444173 | 3_1:+72379229 | None:intergenic |
| AGCGACGACGCCGACGGCTT+GGG | 0.447495 | 3_1:+72379213 | None:intergenic |
| GGTCAAGTGAGTTCCCATTA+GGG | 0.448628 | 3_1:-72376362 | Msa0373370:three_prime_UTR |
| AACCAAAGTGACAGAAGATT+CGG | 0.452756 | 3_1:+72376314 | None:intergenic |
| TCCTGGAAGGCTAGGTTTCG+TGG | 0.453297 | 3_1:-72377762 | Msa0373370:CDS |
| GTGGAGAAGTCGAGGGGCGG+CGG | 0.454962 | 3_1:+72379387 | None:intergenic |
| CTTGGGATTCGGAGAGAGGG+GGG | 0.455183 | 3_1:+72379230 | None:intergenic |
| TGTTGATTGGGTTGATCGTA+GGG | 0.457021 | 3_1:-72379026 | Msa0373370:CDS |
| CTCTGCTTCCATTATCTGGA+GGG | 0.457833 | 3_1:-72377372 | Msa0373370:CDS |
| GTTGGAGATAAGGTTCTAGT+AGG | 0.459409 | 3_1:-72379052 | Msa0373370:CDS |
| CGGCTTGGGATTCGGAGAGA+GGG | 0.460587 | 3_1:+72379227 | None:intergenic |
| CTCACGTCAAATAATATAGT+TGG | 0.462045 | 3_1:+72376148 | None:intergenic |
| TACGCGCATGAAATTGGCTT+GGG | 0.466467 | 3_1:+72379186 | None:intergenic |
| AAGGCTAGGTTTCGTGGTTG+GGG | 0.469259 | 3_1:-72377756 | Msa0373370:CDS |
| TGGCCACCGTGCGGTGGTGG+CGG | 0.469834 | 3_1:+72379410 | None:intergenic |
| AGGTTAAAGACAGGAGATAT+GGG | 0.470165 | 3_1:-72376605 | Msa0373370:CDS |
| CGTGCGGTGGTGGCGGATGA+TGG | 0.471121 | 3_1:+72379417 | None:intergenic |
| GCATAGCAGTTCAGCTCCTC+CGG | 0.471803 | 3_1:+72379117 | None:intergenic |
| GTTTCAACAAGAAGCGGCAG+AGG | 0.472643 | 3_1:-72377418 | Msa0373370:CDS |
| ATCCGAATCTTCTGTCACTT+TGG | 0.472909 | 3_1:-72376316 | Msa0373370:three_prime_UTR |
| TGAACCTGGTTGCATTGTGA+AGG | 0.479235 | 3_1:-72377109 | Msa0373370:CDS |
| TGGAAGGTTCCGGAAGGTTG+TGG | 0.482234 | 3_1:+72379154 | None:intergenic |
| AGATTTGGAAGTGGCGGAAG+TGG | 0.482820 | 3_1:+72379365 | None:intergenic |
| TCACTTTCAATAAACTAGGC+TGG | 0.486647 | 3_1:+72377320 | None:intergenic |
| GCTTTGAGGAGATTCTTGCT+TGG | 0.489229 | 3_1:+72379310 | None:intergenic |
| GACCGAGCTTGTCGATAAAG+AGG | 0.489417 | 3_1:-72378825 | Msa0373370:intron |
| GTTGTTGGTCCTAGTGGAGT+TGG | 0.490221 | 3_1:-72377651 | Msa0373370:CDS |
| AAGATTCGGATTGAACTAAT+GGG | 0.491015 | 3_1:+72376328 | None:intergenic |
| ATACTGCAGATGGGGAGAAT+TGG | 0.493768 | 3_1:-72377581 | Msa0373370:CDS |
| TTGTTGGTCCTAGTGGAGTT+GGG | 0.495356 | 3_1:-72377650 | Msa0373370:CDS |
| CTGCTTCCATTATCTGGAGG+GGG | 0.497196 | 3_1:-72377370 | Msa0373370:CDS |
| TTTGGAAGTGGCGGAAGTGG+TGG | 0.503442 | 3_1:+72379368 | None:intergenic |
| ACGGCTTGGGATTCGGAGAG+AGG | 0.506518 | 3_1:+72379226 | None:intergenic |
| CTCCAAGTAGATTGAACTCA+AGG | 0.506849 | 3_1:-72379645 | Msa0373370:five_prime_UTR |
| CCATGGATTCCTGGAAGGCT+AGG | 0.511868 | 3_1:-72377770 | Msa0373370:CDS |
| CGTACTTGTGATACTGCAGA+TGG | 0.516591 | 3_1:-72377591 | Msa0373370:CDS |
| CGGAAGTGGTGGAGAAGTCG+AGG | 0.517919 | 3_1:+72379379 | None:intergenic |
| CTAAAAGAGAAAGTGATGTA+AGG | 0.519678 | 3_1:-72377002 | Msa0373370:intron |
| CTAGACTTCCCAACTCCACT+AGG | 0.522416 | 3_1:+72377642 | None:intergenic |
| AACTATATTATTTGACGTGA+GGG | 0.525483 | 3_1:-72376146 | None:intergenic |
| TTTGTCACTTTCAATAAACT+AGG | 0.528240 | 3_1:+72377316 | None:intergenic |
| GATCAAACAACAGTGGTTGT+TGG | 0.530900 | 3_1:-72377666 | Msa0373370:CDS |
| AGAGGAATGTGATTCGTGAC+TGG | 0.531609 | 3_1:+72379575 | None:intergenic |
| TCTGCTTCCATTATCTGGAG+GGG | 0.535703 | 3_1:-72377371 | Msa0373370:CDS |
| AAACTAGGCTGGTTAAATCC+AGG | 0.536343 | 3_1:+72377331 | None:intergenic |
| CCTAGCCTTCCAGGAATCCA+TGG | 0.539729 | 3_1:+72377770 | None:intergenic |
| ATAAAGCGTAGGGTTATGGT+TGG | 0.540235 | 3_1:-72379070 | Msa0373370:CDS |
| TCTCTGCTTCCATTATCTGG+AGG | 0.540330 | 3_1:-72377373 | Msa0373370:CDS |
| GAGAAGATCAATGTTATGTC+CGG | 0.541511 | 3_1:+72377704 | None:intergenic |
| GGAGAGAATTGGAGCGAGAG+AGG | 0.542168 | 3_1:+72379264 | None:intergenic |
| AGCGTAAAAGGCTCAAGCTT+AGG | 0.542808 | 3_1:+72378908 | None:intergenic |
| TTGAAACCTCTGCAACTCGC+TGG | 0.543440 | 3_1:+72377434 | None:intergenic |
| GCTGATTGCATATAAATGAA+TGG | 0.545289 | 3_1:-72376225 | Msa0373370:three_prime_UTR |
| GAGGACTGAGCGAGCGAGAG+AGG | 0.546169 | 3_1:+72379557 | None:intergenic |
| AGAAGCATAGAAGACAGTCT+AGG | 0.546591 | 3_1:-72376550 | Msa0373370:CDS |
| TTACGCGCATGAAATTGGCT+TGG | 0.548758 | 3_1:+72379185 | None:intergenic |
| TTCTGGCGGAGATTTGGAAG+TGG | 0.551031 | 3_1:+72379356 | None:intergenic |
| ACAGTGGTTGTTGGTCCTAG+TGG | 0.554024 | 3_1:-72377657 | Msa0373370:CDS |
| GAGTTCAATCTACTTGGAGA+GGG | 0.563368 | 3_1:+72379649 | None:intergenic |
| GAACCTGGTTGCATTGTGAA+GGG | 0.563500 | 3_1:-72377108 | Msa0373370:CDS |
| TGCGAGCGACATCTTGAAGA+AGG | 0.563718 | 3_1:+72379447 | None:intergenic |
| GCAGAGGTTTCAACAAGAAG+CGG | 0.565810 | 3_1:-72377424 | Msa0373370:CDS |
| GGAAGTGGTGGAGAAGTCGA+GGG | 0.572092 | 3_1:+72379380 | None:intergenic |
| TTGTTGAGAGCAAGAGTGAG+AGG | 0.573575 | 3_1:+72378848 | None:intergenic |
| AGGTTCCGGAAGGTTGTGGT+TGG | 0.578813 | 3_1:+72379158 | None:intergenic |
| TCCTCAAAGCATTTAAAAGG+GGG | 0.580228 | 3_1:+72376458 | None:intergenic |
| GGAAGAAGCGACGACGCCGA+CGG | 0.580853 | 3_1:+72379207 | None:intergenic |
| GAGTTCATTTCTCAAGTGTG+AGG | 0.583223 | 3_1:+72379538 | None:intergenic |
| CAGATCAGGAAAATGCTTGG+TGG | 0.584183 | 3_1:-72377177 | Msa0373370:CDS |
| TCAGAGAGGAGTTCCAATTG+AGG | 0.586932 | 3_1:-72377035 | Msa0373370:CDS |
| ATTCAGATCAGGAAAATGCT+TGG | 0.587023 | 3_1:-72377180 | Msa0373370:intron |
| AACCTCTTTATCGACAAGCT+CGG | 0.587353 | 3_1:+72378823 | None:intergenic |
| ACCTGGTTGCATTGTGAAGG+GGG | 0.590236 | 3_1:-72377106 | Msa0373370:CDS |
| TGGTTGAAGCTGAGTCAACT+GGG | 0.590249 | 3_1:-72378874 | Msa0373370:CDS |
| CAACTATATTATTTGACGTG+AGG | 0.590322 | 3_1:-72376147 | None:intergenic |
| GGGCGGCGGTGGCCACCGTG+CGG | 0.598094 | 3_1:+72379401 | None:intergenic |
| TGAGTTCAATCTACTTGGAG+AGG | 0.598163 | 3_1:+72379648 | None:intergenic |
| TTCCTCAAAGCATTTAAAAG+GGG | 0.598316 | 3_1:+72376457 | None:intergenic |
| AACCTGGTTGCATTGTGAAG+GGG | 0.599384 | 3_1:-72377107 | Msa0373370:CDS |
| GGAGGAAGAAGCGTCGTGGA+AGG | 0.600717 | 3_1:+72379138 | None:intergenic |
| AGTACGAGGATTGCTTCTAA+GGG | 0.603135 | 3_1:+72377608 | None:intergenic |
| AAGTGATCTACATTAGCCAC+AGG | 0.604808 | 3_1:+72378956 | None:intergenic |
| GTACTTGTGATACTGCAGAT+GGG | 0.607653 | 3_1:-72377590 | Msa0373370:CDS |
| TGACGACCAGCGAGTTGCAG+AGG | 0.611255 | 3_1:-72377440 | Msa0373370:CDS |
| CACGACGCTTCTTCCTCCGG+AGG | 0.615950 | 3_1:-72379133 | Msa0373370:CDS |
| GTGGTGGAGAAGTCGAGGGG+CGG | 0.619313 | 3_1:+72379384 | None:intergenic |
| TACTTGTGATACTGCAGATG+GGG | 0.623537 | 3_1:-72377589 | Msa0373370:CDS |
| CTCCGGAGGAAGAAGCGTCG+TGG | 0.623732 | 3_1:+72379134 | None:intergenic |
| GCTGAAGAAGATAAAGCGTA+GGG | 0.624542 | 3_1:-72379080 | Msa0373370:CDS |
| TGACGACAATTTGCTTGATG+AGG | 0.624956 | 3_1:-72376489 | Msa0373370:CDS |
| TTTCAACAAGAAGCGGCAGA+GGG | 0.628194 | 3_1:-72377417 | Msa0373370:CDS |
| TGCTGAAGAAGATAAAGCGT+AGG | 0.630697 | 3_1:-72379081 | Msa0373370:CDS |
| GTTGATTGGGTTGATCGTAG+GGG | 0.630927 | 3_1:-72379025 | Msa0373370:CDS |
| ACCCAGAGATACAAGCCGAA+AGG | 0.636929 | 3_1:+72376382 | None:intergenic |
| CTCTCCGAATCCCAAGCCGT+CGG | 0.641704 | 3_1:-72379223 | Msa0373370:CDS |
| ATAGACCATGGATTCCTGGA+AGG | 0.644099 | 3_1:-72377775 | Msa0373370:intron |
| TATTTACAATCAGTATAATG+GGG | 0.644674 | 3_1:+72376408 | None:intergenic |
| GAAGTGGTGGAGAAGTCGAG+GGG | 0.645864 | 3_1:+72379381 | None:intergenic |
| TGGCGGAGATTTGGAAGTGG+CGG | 0.647171 | 3_1:+72379359 | None:intergenic |
| TGAAATGCTTGATCCTCCTG+TGG | 0.652697 | 3_1:-72378972 | Msa0373370:CDS |
| TCATTTATATGCAATCAGCA+AGG | 0.659438 | 3_1:+72376229 | None:intergenic |
| TAGCAGTTCAGCTCCTCCGG+AGG | 0.661076 | 3_1:+72379120 | None:intergenic |
| TGATCTACATTAGCCACAGG+AGG | 0.662023 | 3_1:+72378959 | None:intergenic |
| CATCATCCGCCACCACCGCA+CGG | 0.664641 | 3_1:-72379416 | Msa0373370:CDS |
| TGATGAGATTAGAATCAGAG+AGG | 0.672359 | 3_1:-72377049 | Msa0373370:CDS |
| GCGTCGTGGAAGGTTCCGGA+AGG | 0.677099 | 3_1:+72379148 | None:intergenic |
| AGGAACATCATAATCCAGAA+CGG | 0.692664 | 3_1:+72376249 | None:intergenic |
| ATTGAGAGATCAAACAACAG+TGG | 0.706257 | 3_1:-72377673 | Msa0373370:CDS |
| TGCTTCTTAAGCATCAAACG+TGG | 0.724089 | 3_1:+72376566 | None:intergenic |
| CATCCGCCACCACCGCACGG+TGG | 0.767577 | 3_1:-72379413 | Msa0373370:CDS |
| TCTGCAGTATCACAAGTACG+AGG | 0.774848 | 3_1:+72377594 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTATTATTTTAAATATTTGG+AGG | - | chr3_1:72377826-72377845 | Msa0373370:intron | 10.0% |
| !!! | TATGACAATATTTTTTATGT+TGG | - | chr3_1:72377263-72377282 | Msa0373370:intron | 15.0% |
| !!! | ATTTACTTACAAAACTATTT+TGG | + | chr3_1:72377632-72377651 | None:intergenic | 15.0% |
| !! | CAACAAATTCATAAATTTAA+AGG | + | chr3_1:72377880-72377899 | None:intergenic | 15.0% |
| !! | AATTAAACAATTATTCAAAC+CGG | + | chr3_1:72378598-72378617 | None:intergenic | 15.0% |
| !! | ATATTTACAATCAGTATAAT+GGG | + | chr3_1:72379405-72379424 | None:intergenic | 15.0% |
| !! | AATATTTACAATCAGTATAA+TGG | + | chr3_1:72379406-72379425 | None:intergenic | 15.0% |
| !!! | TTTCAAAGCTTTTTTTGAAA+CGG | + | chr3_1:72376330-72376349 | None:intergenic | 20.0% |
| !!! | TGGAATATAAAAGAGTATTT+TGG | - | chr3_1:72377283-72377302 | Msa0373370:intron | 20.0% |
| !! | AGTAATAACATAAACAATTG+CGG | + | chr3_1:72377487-72377506 | None:intergenic | 20.0% |
| !!! | ATAAGCTATTTTTATACCAA+AGG | - | chr3_1:72377515-72377534 | Msa0373370:intron | 20.0% |
| !! | TTTCTTTATATAAGCTATCT+TGG | - | chr3_1:72377556-72377575 | Msa0373370:intron | 20.0% |
| !!! | TATTTGTTATGTTTCTAACT+TGG | - | chr3_1:72377961-72377980 | Msa0373370:intron | 20.0% |
| !! | TAACTTAAACATACTAACTT+CGG | + | chr3_1:72378542-72378561 | None:intergenic | 20.0% |
| !! | TATTTACAATCAGTATAATG+GGG | + | chr3_1:72379404-72379423 | None:intergenic | 20.0% |
| !! | TGATTGTAAATATTTCCTTT+CGG | - | chr3_1:72379412-72379431 | Msa0373370:CDS | 20.0% |
| !! | TCAAATAATATAGTTGGATT+TGG | + | chr3_1:72379658-72379677 | None:intergenic | 20.0% |
| ! | AAAAAAATCACATCCAACAT+TGG | + | chr3_1:72377123-72377142 | None:intergenic | 25.0% |
| ! | AATTAAGCACATGTAACATA+AGG | - | chr3_1:72377182-72377201 | Msa0373370:intron | 25.0% |
| ! | ATTAAGCACATGTAACATAA+GGG | - | chr3_1:72377183-72377202 | Msa0373370:intron | 25.0% |
| !!! | AGTTTTGTAAGTAAATATGC+TGG | - | chr3_1:72377636-72377655 | Msa0373370:CDS | 25.0% |
| ! | GTACTTATCTCAATTGAAAA+AGG | + | chr3_1:72377695-72377714 | None:intergenic | 25.0% |
| ! | TTTCAATTGAGATAAGTACT+TGG | - | chr3_1:72377696-72377715 | Msa0373370:CDS | 25.0% |
| ! | GAGCTTCTTAAATAATTTGA+CGG | - | chr3_1:72377776-72377795 | Msa0373370:intron | 25.0% |
| ! | AGCTTCTTAAATAATTTGAC+GGG | - | chr3_1:72377777-72377796 | Msa0373370:intron | 25.0% |
| !!! | TAAATATTTGGAGGTATCAT+TGG | - | chr3_1:72377835-72377854 | Msa0373370:intron | 25.0% |
| !!! | AAATATTTGGAGGTATCATT+GGG | - | chr3_1:72377836-72377855 | Msa0373370:intron | 25.0% |
| !! | TTGAAAAGTTTGTTCAAGTT+CGG | - | chr3_1:72377897-72377916 | Msa0373370:intron | 25.0% |
| !! | TTTTACTATGTGTATGACTT+TGG | - | chr3_1:72378290-72378309 | Msa0373370:intron | 25.0% |
| !!! | TTTGTCACTTTCAATAAACT+AGG | + | chr3_1:72378496-72378515 | None:intergenic | 25.0% |
| ! | AACTTAAACATACTAACTTC+GGG | + | chr3_1:72378541-72378560 | None:intergenic | 25.0% |
| ! | GTGAATATACTAGATATAGT+TGG | + | chr3_1:72378568-72378587 | None:intergenic | 25.0% |
| !! | TAGTATATTCACAGTTTTTC+CGG | - | chr3_1:72378576-72378595 | Msa0373370:intron | 25.0% |
| ! | AATGCAAAAGATTTCTAACT+TGG | - | chr3_1:72379076-72379095 | Msa0373370:CDS | 25.0% |
| ! | CAAAAGTTGTAACAAGTATT+TGG | - | chr3_1:72379159-72379178 | Msa0373370:CDS | 25.0% |
| !! | CAAGATCATCTAAAATTGAT+TGG | + | chr3_1:72379296-72379315 | None:intergenic | 25.0% |
| !! | ATTCCTCAAAGCATTTAAAA+GGG | + | chr3_1:72379356-72379375 | None:intergenic | 25.0% |
| TCATAATCAGAATGTCGTTA+TGG | + | chr3_1:72377022-72377041 | None:intergenic | 30.0% | |
| ! | CACAATTTTCATCTAACACA+AGG | + | chr3_1:72377085-72377104 | None:intergenic | 30.0% |
| CTTGTGTTAGATGAAAATTG+TGG | - | chr3_1:72377083-72377102 | Msa0373370:CDS | 30.0% | |
| ! | TTTTCAGCCAATAAGAGTTA+AGG | - | chr3_1:72377139-72377158 | Msa0373370:CDS | 30.0% |
| AAATCAGCCTTAACTCTTAT+TGG | + | chr3_1:72377149-72377168 | None:intergenic | 30.0% | |
| AATAAGAGTTAAGGCTGATT+TGG | - | chr3_1:72377148-72377167 | Msa0373370:CDS | 30.0% | |
| ! | ACCAGTTTCTAGATCAAAAA+GGG | - | chr3_1:72377414-72377433 | Msa0373370:CDS | 30.0% |
| TCAAATAAGTGAATCCAAAG+AGG | - | chr3_1:72377668-72377687 | Msa0373370:CDS | 30.0% | |
| GATTCAACACTGCAAAAAAT+TGG | + | chr3_1:72378086-72378105 | None:intergenic | 30.0% | |
| !!! | ATTTTTTGCAGTGTTGAATC+CGG | - | chr3_1:72378086-72378105 | Msa0373370:intron | 30.0% |
| TAAAATCTGAGAAACAATGC+AGG | + | chr3_1:72378335-72378354 | None:intergenic | 30.0% | |
| !! | TGCATTGTTTCTCAGATTTT+AGG | - | chr3_1:72378334-72378353 | Msa0373370:intron | 30.0% |
| TTTAACAATTGCTTGCATCT+TGG | - | chr3_1:72378677-72378696 | Msa0373370:intron | 30.0% | |
| CTAAAAGAGAAAGTGATGTA+AGG | - | chr3_1:72378807-72378826 | Msa0373370:intron | 30.0% | |
| TGTATGATACTTGATCGAAT+AGG | - | chr3_1:72378882-72378901 | Msa0373370:CDS | 30.0% | |
| TTTGACAAGCAATATACAGT+AGG | + | chr3_1:72379134-72379153 | None:intergenic | 30.0% | |
| ! | ACTAATACGCTATTCTTTTC+AGG | - | chr3_1:72379184-72379203 | Msa0373370:CDS | 30.0% |
| !!! | ATTCTTTTCAGGTTAAAGAC+AGG | - | chr3_1:72379195-72379214 | Msa0373370:CDS | 30.0% |
| ! | TTCCTCAAAGCATTTAAAAG+GGG | + | chr3_1:72379355-72379374 | None:intergenic | 30.0% |
| ! | CATTCCTCAAAGCATTTAAA+AGG | + | chr3_1:72379357-72379376 | None:intergenic | 30.0% |
| GGGGATTAACGAAAAATTTA+AGG | + | chr3_1:72379385-72379404 | None:intergenic | 30.0% | |
| AAGATTCGGATTGAACTAAT+GGG | + | chr3_1:72379484-72379503 | None:intergenic | 30.0% | |
| TCATTTATATGCAATCAGCA+AGG | + | chr3_1:72379583-72379602 | None:intergenic | 30.0% | |
| GCTGATTGCATATAAATGAA+TGG | - | chr3_1:72379584-72379603 | Msa0373370:five_prime_UTR | 30.0% | |
| CTCACGTCAAATAATATAGT+TGG | + | chr3_1:72379664-72379683 | None:intergenic | 30.0% | |
| AACCTTGAGTTCAATCTACT+TGG | + | chr3_1:72376169-72376188 | None:intergenic | 35.0% | |
| ! | TACCCAAATGTCGTTTAACT+TGG | - | chr3_1:72376191-72376210 | Msa0373370:three_prime_UTR | 35.0% |
| TGCCAAGTTAAACGACATTT+GGG | + | chr3_1:72376196-72376215 | None:intergenic | 35.0% | |
| TTGCCAAGTTAAACGACATT+TGG | + | chr3_1:72376197-72376216 | None:intergenic | 35.0% | |
| TTCTAGTAGGTTCTGTTGAT+TGG | - | chr3_1:72376770-72376789 | Msa0373370:intron | 35.0% | |
| ! | TCTAGTAGGTTCTGTTGATT+GGG | - | chr3_1:72376771-72376790 | Msa0373370:intron | 35.0% |
| AGCTTAGATTAGACCAATGT+TGG | - | chr3_1:72377107-72377126 | Msa0373370:CDS | 35.0% | |
| CAAAACAGGTAACAAATGAC+TGG | + | chr3_1:72377382-72377401 | None:intergenic | 35.0% | |
| ! | GACCAGTTTCTAGATCAAAA+AGG | - | chr3_1:72377413-72377432 | Msa0373370:CDS | 35.0% |
| ! | CCAGTTTCTAGATCAAAAAG+GGG | - | chr3_1:72377415-72377434 | Msa0373370:CDS | 35.0% |
| TTTGATCTGCTAGAAAACAG+GGG | + | chr3_1:72377460-72377479 | None:intergenic | 35.0% | |
| GTTTGATCTGCTAGAAAACA+GGG | + | chr3_1:72377461-72377480 | None:intergenic | 35.0% | |
| !!! | GTCTGACTTGTTTTATCCTT+TGG | + | chr3_1:72377534-72377553 | None:intergenic | 35.0% |
| CAATTGAAAAAGGACCTCTT+TGG | + | chr3_1:72377685-72377704 | None:intergenic | 35.0% | |
| ! | ACTTGGCTCTTAATACAAAC+AGG | - | chr3_1:72377713-72377732 | Msa0373370:CDS | 35.0% |
| !! | GGCAGAAACTGATTCATTTT+AGG | - | chr3_1:72377798-72377817 | Msa0373370:intron | 35.0% |
| CATCAGAAAATAATCACAGC+TGG | + | chr3_1:72377990-72378009 | None:intergenic | 35.0% | |
| TTTCACTCTTGTATAGACCA+TGG | - | chr3_1:72378022-72378041 | Msa0373370:intron | 35.0% | |
| GAGAAGATCAATGTTATGTC+CGG | + | chr3_1:72378108-72378127 | None:intergenic | 35.0% | |
| ! | CTGTTGTTTGATCTCTCAAT+TGG | + | chr3_1:72378136-72378155 | None:intergenic | 35.0% |
| ATTGAGAGATCAAACAACAG+TGG | - | chr3_1:72378136-72378155 | Msa0373370:intron | 35.0% | |
| TCACTTTCAATAAACTAGGC+TGG | + | chr3_1:72378492-72378511 | None:intergenic | 35.0% | |
| ! | CATTTTCCTGATCTGAATAG+GGG | + | chr3_1:72378627-72378646 | None:intergenic | 35.0% |
| ! | GCATTTTCCTGATCTGAATA+GGG | + | chr3_1:72378628-72378647 | None:intergenic | 35.0% |
| ! | AGCATTTTCCTGATCTGAAT+AGG | + | chr3_1:72378629-72378648 | None:intergenic | 35.0% |
| ATTCAGATCAGGAAAATGCT+TGG | - | chr3_1:72378629-72378648 | Msa0373370:intron | 35.0% | |
| TGATGAGATTAGAATCAGAG+AGG | - | chr3_1:72378760-72378779 | Msa0373370:intron | 35.0% | |
| TAGTTCCAAATGTCCTCAAT+TGG | + | chr3_1:72378790-72378809 | None:intergenic | 35.0% | |
| !!! | TGATTTTTTGACCATGTACG+AGG | - | chr3_1:72378924-72378943 | Msa0373370:CDS | 35.0% |
| ACACTAACATGAAAGAGAGT+GGG | - | chr3_1:72378988-72379007 | Msa0373370:CDS | 35.0% | |
| !!! | AAAGAGAGTGGGCTATTTTT+AGG | - | chr3_1:72378999-72379018 | Msa0373370:CDS | 35.0% |
| !!! | AAGAGAGTGGGCTATTTTTA+GGG | - | chr3_1:72379000-72379019 | Msa0373370:CDS | 35.0% |
| AGGTTAAAGACAGGAGATAT+GGG | - | chr3_1:72379204-72379223 | Msa0373370:CDS | 35.0% | |
| ! | TCCTCAAAGCATTTAAAAGG+GGG | + | chr3_1:72379354-72379373 | None:intergenic | 35.0% |
| GAAGATTCGGATTGAACTAA+TGG | + | chr3_1:72379485-72379504 | None:intergenic | 35.0% | |
| AACCAAAGTGACAGAAGATT+CGG | + | chr3_1:72379498-72379517 | None:intergenic | 35.0% | |
| AGGAACATCATAATCCAGAA+CGG | + | chr3_1:72379563-72379582 | None:intergenic | 35.0% | |
| GAGTTCAATCTACTTGGAGA+GGG | + | chr3_1:72376163-72376182 | None:intergenic | 40.0% | |
| TGAGTTCAATCTACTTGGAG+AGG | + | chr3_1:72376164-72376183 | None:intergenic | 40.0% | |
| CTCCAAGTAGATTGAACTCA+AGG | - | chr3_1:72376164-72376183 | Msa0373370:three_prime_UTR | 40.0% | |
| GAGTTCATTTCTCAAGTGTG+AGG | + | chr3_1:72376274-72376293 | None:intergenic | 40.0% | |
| !!! | TTTAGGGTTTTGGTTTCTGG+CGG | + | chr3_1:72376470-72376489 | None:intergenic | 40.0% |
| !!! | GTGTTTAGGGTTTTGGTTTC+TGG | + | chr3_1:72376473-72376492 | None:intergenic | 40.0% |
| TGCTGAAGAAGATAAAGCGT+AGG | - | chr3_1:72376728-72376747 | Msa0373370:intron | 40.0% | |
| GCTGAAGAAGATAAAGCGTA+GGG | - | chr3_1:72376729-72376748 | Msa0373370:intron | 40.0% | |
| GAAGATAAAGCGTAGGGTTA+TGG | - | chr3_1:72376735-72376754 | Msa0373370:intron | 40.0% | |
| ATAAAGCGTAGGGTTATGGT+TGG | - | chr3_1:72376739-72376758 | Msa0373370:intron | 40.0% | |
| TAGGGTTATGGTTGGAGATA+AGG | - | chr3_1:72376747-72376766 | Msa0373370:intron | 40.0% | |
| ! | GTTGGAGATAAGGTTCTAGT+AGG | - | chr3_1:72376757-72376776 | Msa0373370:intron | 40.0% |
| !! | TGTTGATTGGGTTGATCGTA+GGG | - | chr3_1:72376783-72376802 | Msa0373370:intron | 40.0% |
| AAGTGATCTACATTAGCCAC+AGG | + | chr3_1:72376856-72376875 | None:intergenic | 40.0% | |
| AAAAACCGCGTTAGCGTAAA+AGG | + | chr3_1:72376916-72376935 | None:intergenic | 40.0% | |
| ! | TTTTACGCTAACGCGGTTTT+TGG | - | chr3_1:72376915-72376934 | Msa0373370:intron | 40.0% |
| AACCTCTTTATCGACAAGCT+CGG | + | chr3_1:72376989-72377008 | None:intergenic | 40.0% | |
| CTAGACAAAAAGTTGTCCCA+TGG | - | chr3_1:72377326-72377345 | Msa0373370:CDS | 40.0% | |
| TTGATCTAGAAACTGGTCGT+AGG | + | chr3_1:72377411-72377430 | None:intergenic | 40.0% | |
| ! | CCCCTTTTTGATCTAGAAAC+TGG | + | chr3_1:72377418-72377437 | None:intergenic | 40.0% |
| CGTTTGATCTGCTAGAAAAC+AGG | + | chr3_1:72377462-72377481 | None:intergenic | 40.0% | |
| ! | AACAGGCTTTTATGCGTTGA+AGG | - | chr3_1:72377730-72377749 | Msa0373370:CDS | 40.0% |
| TTGTATAGACCATGGATTCC+TGG | - | chr3_1:72378030-72378049 | Msa0373370:intron | 40.0% | |
| CAACACTGCAAAAAATTGGC+TGG | + | chr3_1:72378082-72378101 | None:intergenic | 40.0% | |
| GATCAAACAACAGTGGTTGT+TGG | - | chr3_1:72378143-72378162 | Msa0373370:intron | 40.0% | |
| AGTACGAGGATTGCTTCTAA+GGG | + | chr3_1:72378204-72378223 | None:intergenic | 40.0% | |
| AAGTACGAGGATTGCTTCTA+AGG | + | chr3_1:72378205-72378224 | None:intergenic | 40.0% | |
| GTACTTGTGATACTGCAGAT+GGG | - | chr3_1:72378219-72378238 | Msa0373370:intron | 40.0% | |
| TACTTGTGATACTGCAGATG+GGG | - | chr3_1:72378220-72378239 | Msa0373370:intron | 40.0% | |
| GTCGAGAAAAAGAAACACAC+AGG | + | chr3_1:72378260-72378279 | None:intergenic | 40.0% | |
| !! | CTCAGATTTTAGGTAGCAAG+TGG | - | chr3_1:72378344-72378363 | Msa0373370:intron | 40.0% |
| ! | AAACTAGGCTGGTTAAATCC+AGG | + | chr3_1:72378481-72378500 | None:intergenic | 40.0% |
| GAGTTCCAATTGAGGACATT+TGG | - | chr3_1:72378782-72378801 | Msa0373370:intron | 40.0% | |
| ATGTATAGCATCCTCGTACA+TGG | + | chr3_1:72378938-72378957 | None:intergenic | 40.0% | |
| GACACTAACATGAAAGAGAG+TGG | - | chr3_1:72378987-72379006 | Msa0373370:CDS | 40.0% | |
| CAGGTTAAAGACAGGAGATA+TGG | - | chr3_1:72379203-72379222 | Msa0373370:CDS | 40.0% | |
| TGCTTCTTAAGCATCAAACG+TGG | + | chr3_1:72379246-72379265 | None:intergenic | 40.0% | |
| ! | AGAAGCATAGAAGACAGTCT+AGG | - | chr3_1:72379259-72379278 | Msa0373370:CDS | 40.0% |
| ! | TGACGACAATTTGCTTGATG+AGG | - | chr3_1:72379320-72379339 | Msa0373370:CDS | 40.0% |
| ! | TCCCCCTTTTAAATGCTTTG+AGG | - | chr3_1:72379350-72379369 | Msa0373370:CDS | 40.0% |
| ! | ATCCGAATCTTCTGTCACTT+TGG | - | chr3_1:72379493-72379512 | Msa0373370:five_prime_UTR | 40.0% |
| CATTAACAAACACACCGTTC+TGG | - | chr3_1:72379546-72379565 | Msa0373370:five_prime_UTR | 40.0% | |
| AGAGGAATGTGATTCGTGAC+TGG | + | chr3_1:72376237-72376256 | None:intergenic | 45.0% | |
| !! | TTTGGTTTCTGGCGGAGATT+TGG | + | chr3_1:72376462-72376481 | None:intergenic | 45.0% |
| !! | GAGCTTCGTGTTTAGGGTTT+TGG | + | chr3_1:72376480-72376499 | None:intergenic | 45.0% |
| TGCTTGGAGCTTCGTGTTTA+GGG | + | chr3_1:72376486-72376505 | None:intergenic | 45.0% | |
| TTGCTTGGAGCTTCGTGTTT+AGG | + | chr3_1:72376487-72376506 | None:intergenic | 45.0% | |
| !! | GCTTTGAGGAGATTCTTGCT+TGG | + | chr3_1:72376502-72376521 | None:intergenic | 45.0% |
| ! | TGAGTGTGCGTTTTGCTTTG+AGG | + | chr3_1:72376516-72376535 | None:intergenic | 45.0% |
| ATTTCTTCGCGGGAGAGAAT+TGG | + | chr3_1:72376559-72376578 | None:intergenic | 45.0% | |
| ! | TACGCGCATGAAATTGGCTT+GGG | + | chr3_1:72376626-72376645 | None:intergenic | 45.0% |
| TTACGCGCATGAAATTGGCT+TGG | + | chr3_1:72376627-72376646 | None:intergenic | 45.0% | |
| GACGATTACGCGCATGAAAT+TGG | + | chr3_1:72376632-72376651 | None:intergenic | 45.0% | |
| !! | CTGTTGATTGGGTTGATCGT+AGG | - | chr3_1:72376782-72376801 | Msa0373370:intron | 45.0% |
| !! | GTTGATTGGGTTGATCGTAG+GGG | - | chr3_1:72376784-72376803 | Msa0373370:intron | 45.0% |
| TGAAATGCTTGATCCTCCTG+TGG | - | chr3_1:72376837-72376856 | Msa0373370:intron | 45.0% | |
| TGATCTACATTAGCCACAGG+AGG | + | chr3_1:72376853-72376872 | None:intergenic | 45.0% | |
| AGCGTAAAAGGCTCAAGCTT+AGG | + | chr3_1:72376904-72376923 | None:intergenic | 45.0% | |
| ! | TTGAGCCTTTTACGCTAACG+CGG | - | chr3_1:72376908-72376927 | Msa0373370:intron | 45.0% |
| TTGGTTGAAGCTGAGTCAAC+TGG | - | chr3_1:72376934-72376953 | Msa0373370:intron | 45.0% | |
| TGGTTGAAGCTGAGTCAACT+GGG | - | chr3_1:72376935-72376954 | Msa0373370:intron | 45.0% | |
| TTGTTGAGAGCAAGAGTGAG+AGG | + | chr3_1:72376964-72376983 | None:intergenic | 45.0% | |
| AAGTTGTCCCATGGTTAGTG+AGG | - | chr3_1:72377335-72377354 | Msa0373370:CDS | 45.0% | |
| AGTTGTCCCATGGTTAGTGA+GGG | - | chr3_1:72377336-72377355 | Msa0373370:CDS | 45.0% | |
| TCTTGTCCCTCACTAACCAT+GGG | + | chr3_1:72377345-72377364 | None:intergenic | 45.0% | |
| TTCTTGTCCCTCACTAACCA+TGG | + | chr3_1:72377346-72377365 | None:intergenic | 45.0% | |
| TCTGCTAGAAAACAGGGGAT+TGG | + | chr3_1:72377455-72377474 | None:intergenic | 45.0% | |
| ATAGACCATGGATTCCTGGA+AGG | - | chr3_1:72378034-72378053 | Msa0373370:intron | 45.0% | |
| TTGTTGGTCCTAGTGGAGTT+GGG | - | chr3_1:72378159-72378178 | Msa0373370:intron | 45.0% | |
| TCTGCAGTATCACAAGTACG+AGG | + | chr3_1:72378218-72378237 | None:intergenic | 45.0% | |
| CGTACTTGTGATACTGCAGA+TGG | - | chr3_1:72378218-72378237 | Msa0373370:intron | 45.0% | |
| ATACTGCAGATGGGGAGAAT+TGG | - | chr3_1:72378228-72378247 | Msa0373370:intron | 45.0% | |
| GAGAAACAATGCAGGTACAC+AGG | + | chr3_1:72378327-72378346 | None:intergenic | 45.0% | |
| GCAGAGGTTTCAACAAGAAG+CGG | - | chr3_1:72378385-72378404 | Msa0373370:intron | 45.0% | |
| TTTCAACAAGAAGCGGCAGA+GGG | - | chr3_1:72378392-72378411 | Msa0373370:intron | 45.0% | |
| GTCTCTCTGCTTCCATTATC+TGG | - | chr3_1:72378433-72378452 | Msa0373370:intron | 45.0% | |
| TCTCTGCTTCCATTATCTGG+AGG | - | chr3_1:72378436-72378455 | Msa0373370:intron | 45.0% | |
| CTCTGCTTCCATTATCTGGA+GGG | - | chr3_1:72378437-72378456 | Msa0373370:intron | 45.0% | |
| TCTGCTTCCATTATCTGGAG+GGG | - | chr3_1:72378438-72378457 | Msa0373370:intron | 45.0% | |
| AGATAACCCCCTCCAGATAA+TGG | + | chr3_1:72378448-72378467 | None:intergenic | 45.0% | |
| GGTTATCTTGCTGATACTCC+TGG | - | chr3_1:72378460-72378479 | Msa0373370:intron | 45.0% | |
| CTGTTTCCCCTATTCAGATC+AGG | - | chr3_1:72378618-72378637 | Msa0373370:intron | 45.0% | |
| CAGATCAGGAAAATGCTTGG+TGG | - | chr3_1:72378632-72378651 | Msa0373370:intron | 45.0% | |
| TGAACCTGGTTGCATTGTGA+AGG | - | chr3_1:72378700-72378719 | Msa0373370:intron | 45.0% | |
| GAACCTGGTTGCATTGTGAA+GGG | - | chr3_1:72378701-72378720 | Msa0373370:intron | 45.0% | |
| AACCTGGTTGCATTGTGAAG+GGG | - | chr3_1:72378702-72378721 | Msa0373370:intron | 45.0% | |
| TTGCATTGTGAAGGGGGATT+GGG | - | chr3_1:72378709-72378728 | Msa0373370:intron | 45.0% | |
| TCAGAGAGGAGTTCCAATTG+AGG | - | chr3_1:72378774-72378793 | Msa0373370:intron | 45.0% | |
| ! | TTCCTTTCGGCTTGTATCTC+TGG | - | chr3_1:72379425-72379444 | Msa0373370:CDS | 45.0% |
| ! | TCCTTTCGGCTTGTATCTCT+GGG | - | chr3_1:72379426-72379445 | Msa0373370:CDS | 45.0% |
| GGTCAAGTGAGTTCCCATTA+GGG | - | chr3_1:72379447-72379466 | Msa0373370:exon | 45.0% | |
| GGAACTCACTTGACCCTAAT+GGG | + | chr3_1:72379463-72379482 | None:intergenic | 45.0% | |
| !!! | CAATTATTATTTTAAATATT+TGG | - | chr3_1:72377823-72377842 | Msa0373370:intron | 5.0% |
| TGCGAGCGACATCTTGAAGA+AGG | + | chr3_1:72376365-72376384 | None:intergenic | 50.0% | |
| ! | AGATTTGGAAGTGGCGGAAG+TGG | + | chr3_1:72376447-72376466 | None:intergenic | 50.0% |
| TTCTGGCGGAGATTTGGAAG+TGG | + | chr3_1:72376456-72376475 | None:intergenic | 50.0% | |
| ATCGTCCAACCACAACCTTC+CGG | - | chr3_1:72376646-72376665 | Msa0373370:intron | 50.0% | |
| GACCGAGCTTGTCGATAAAG+AGG | - | chr3_1:72376984-72377003 | Msa0373370:intron | 50.0% | |
| GTCGTAGGCTTGGACAAAAC+AGG | + | chr3_1:72377396-72377415 | None:intergenic | 50.0% | |
| CTAGAAACTGGTCGTAGGCT+TGG | + | chr3_1:72377406-72377425 | None:intergenic | 50.0% | |
| GAAGGCTAGGTTTCGTGGTT+GGG | - | chr3_1:72378052-72378071 | Msa0373370:intron | 50.0% | |
| AAGGCTAGGTTTCGTGGTTG+GGG | - | chr3_1:72378053-72378072 | Msa0373370:intron | 50.0% | |
| ACAGTGGTTGTTGGTCCTAG+TGG | - | chr3_1:72378152-72378171 | Msa0373370:intron | 50.0% | |
| GTTGTTGGTCCTAGTGGAGT+TGG | - | chr3_1:72378158-72378177 | Msa0373370:intron | 50.0% | |
| CTAGACTTCCCAACTCCACT+AGG | + | chr3_1:72378170-72378189 | None:intergenic | 50.0% | |
| TTGAAACCTCTGCAACTCGC+TGG | + | chr3_1:72378378-72378397 | None:intergenic | 50.0% | |
| GTTTCAACAAGAAGCGGCAG+AGG | - | chr3_1:72378391-72378410 | Msa0373370:intron | 50.0% | |
| CTGCTTCCATTATCTGGAGG+GGG | - | chr3_1:72378439-72378458 | Msa0373370:intron | 50.0% | |
| TGCTTGCATCTTGGTGAACC+TGG | - | chr3_1:72378686-72378705 | Msa0373370:intron | 50.0% | |
| ACCTGGTTGCATTGTGAAGG+GGG | - | chr3_1:72378703-72378722 | Msa0373370:intron | 50.0% | |
| GTTGCATTGTGAAGGGGGAT+TGG | - | chr3_1:72378708-72378727 | Msa0373370:intron | 50.0% | |
| ACCCAGAGATACAAGCCGAA+AGG | + | chr3_1:72379430-72379449 | None:intergenic | 50.0% | |
| GGGTCAAGTGAGTTCCCATT+AGG | - | chr3_1:72379446-72379465 | Msa0373370:exon | 50.0% | |
| GGGAACTCACTTGACCCTAA+TGG | + | chr3_1:72379464-72379483 | None:intergenic | 50.0% | |
| ! | GAAGTGGTGGAGAAGTCGAG+GGG | + | chr3_1:72376431-72376450 | None:intergenic | 55.0% |
| ! | GGAAGTGGTGGAGAAGTCGA+GGG | + | chr3_1:72376432-72376451 | None:intergenic | 55.0% |
| ! | TTTGGAAGTGGCGGAAGTGG+TGG | + | chr3_1:72376444-72376463 | None:intergenic | 55.0% |
| TGGCGGAGATTTGGAAGTGG+CGG | + | chr3_1:72376453-72376472 | None:intergenic | 55.0% | |
| GGAGAGAATTGGAGCGAGAG+AGG | + | chr3_1:72376548-72376567 | None:intergenic | 55.0% | |
| AGAGAGGGGGGATTTCTTCG+CGG | + | chr3_1:72376570-72376589 | None:intergenic | 55.0% | |
| AGGTTCCGGAAGGTTGTGGT+TGG | + | chr3_1:72376654-72376673 | None:intergenic | 55.0% | |
| TGGAAGGTTCCGGAAGGTTG+TGG | + | chr3_1:72376658-72376677 | None:intergenic | 55.0% | |
| !! | AGAAGCGTCGTGGAAGGTTC+CGG | + | chr3_1:72376668-72376687 | None:intergenic | 55.0% |
| TTCCACGACGCTTCTTCCTC+CGG | - | chr3_1:72376673-72376692 | Msa0373370:intron | 55.0% | |
| GCATAGCAGTTCAGCTCCTC+CGG | + | chr3_1:72376695-72376714 | None:intergenic | 55.0% | |
| ! | CCTAGCCTTCCAGGAATCCA+TGG | + | chr3_1:72378042-72378061 | None:intergenic | 55.0% |
| CCATGGATTCCTGGAAGGCT+AGG | - | chr3_1:72378039-72378058 | Msa0373370:intron | 55.0% | |
| TCCTGGAAGGCTAGGTTTCG+TGG | - | chr3_1:72378047-72378066 | Msa0373370:intron | 55.0% | |
| ! | ACCACGAAACCTAGCCTTCC+AGG | + | chr3_1:72378051-72378070 | None:intergenic | 55.0% |
| GGAAGGCTAGGTTTCGTGGT+TGG | - | chr3_1:72378051-72378070 | Msa0373370:intron | 55.0% | |
| TCCCCCTTCACAATGCAACC+AGG | + | chr3_1:72378707-72378726 | None:intergenic | 55.0% | |
| ! | CGGAAGTGGTGGAGAAGTCG+AGG | + | chr3_1:72376433-72376452 | None:intergenic | 60.0% |
| GAGAGGGGGGATTTCTTCGC+GGG | + | chr3_1:72376569-72376588 | None:intergenic | 60.0% | |
| CTTGGGATTCGGAGAGAGGG+GGG | + | chr3_1:72376582-72376601 | None:intergenic | 60.0% | |
| GCTTGGGATTCGGAGAGAGG+GGG | + | chr3_1:72376583-72376602 | None:intergenic | 60.0% | |
| GGCTTGGGATTCGGAGAGAG+GGG | + | chr3_1:72376584-72376603 | None:intergenic | 60.0% | |
| ! | CGGCTTGGGATTCGGAGAGA+GGG | + | chr3_1:72376585-72376604 | None:intergenic | 60.0% |
| ! | ACGGCTTGGGATTCGGAGAG+AGG | + | chr3_1:72376586-72376605 | None:intergenic | 60.0% |
| CTCTCCGAATCCCAAGCCGT+CGG | - | chr3_1:72376586-72376605 | Msa0373370:CDS | 60.0% | |
| !! | GGAGGAAGAAGCGTCGTGGA+AGG | + | chr3_1:72376674-72376693 | None:intergenic | 60.0% |
| TAGCAGTTCAGCTCCTCCGG+AGG | + | chr3_1:72376692-72376711 | None:intergenic | 60.0% | |
| TGACGACCAGCGAGTTGCAG+AGG | - | chr3_1:72378369-72378388 | Msa0373370:intron | 60.0% | |
| GAGGACTGAGCGAGCGAGAG+AGG | + | chr3_1:72376255-72376274 | None:intergenic | 65.0% | |
| CATCATCCGCCACCACCGCA+CGG | - | chr3_1:72376393-72376412 | Msa0373370:three_prime_UTR | 65.0% | |
| ! | GTGGTGGAGAAGTCGAGGGG+CGG | + | chr3_1:72376428-72376447 | None:intergenic | 65.0% |
| ! | GACGCCGACGGCTTGGGATT+CGG | + | chr3_1:72376593-72376612 | None:intergenic | 65.0% |
| GGAAGAAGCGACGACGCCGA+CGG | + | chr3_1:72376605-72376624 | None:intergenic | 65.0% | |
| GCGTCGTGGAAGGTTCCGGA+AGG | + | chr3_1:72376664-72376683 | None:intergenic | 65.0% | |
| !! | CTCCGGAGGAAGAAGCGTCG+TGG | + | chr3_1:72376678-72376697 | None:intergenic | 65.0% |
| CACGACGCTTCTTCCTCCGG+AGG | - | chr3_1:72376676-72376695 | Msa0373370:intron | 65.0% | |
| !! | CGTGCGGTGGTGGCGGATGA+TGG | + | chr3_1:72376395-72376414 | None:intergenic | 70.0% |
| GTGGAGAAGTCGAGGGGCGG+CGG | + | chr3_1:72376425-72376444 | None:intergenic | 70.0% | |
| AGCGACGACGCCGACGGCTT+GGG | + | chr3_1:72376599-72376618 | None:intergenic | 70.0% | |
| AAGCGACGACGCCGACGGCT+TGG | + | chr3_1:72376600-72376619 | None:intergenic | 70.0% | |
| CATCCGCCACCACCGCACGG+TGG | - | chr3_1:72376396-72376415 | Msa0373370:three_prime_UTR | 75.0% | |
| ! | TGGCCACCGTGCGGTGGTGG+CGG | + | chr3_1:72376402-72376421 | None:intergenic | 75.0% |
| GAGAAGTCGAGGGGCGGCGG+TGG | + | chr3_1:72376422-72376441 | None:intergenic | 75.0% | |
| ! | CGGTGGCCACCGTGCGGTGG+TGG | + | chr3_1:72376405-72376424 | None:intergenic | 80.0% |
| ! | CGGCGGTGGCCACCGTGCGG+TGG | + | chr3_1:72376408-72376427 | None:intergenic | 85.0% |
| ! | GGGCGGCGGTGGCCACCGTG+CGG | + | chr3_1:72376411-72376430 | None:intergenic | 85.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_1 | gene | 72376148 | 72379683 | 72376148 | ID=Msa0373370;Name=Msa0373370 |
| chr3_1 | mRNA | 72376148 | 72379683 | 72376148 | ID=Msa0373370-mRNA-1;Parent=Msa0373370;Name=Msa0373370-mRNA-1;_AED=0.09;_eAED=0.09;_QI=225|1|1|1|1|1|5|306|471 |
| chr3_1 | exon | 72376148 | 72376625 | 72376148 | ID=Msa0373370-mRNA-1:exon:16086;Parent=Msa0373370-mRNA-1 |
| chr3_1 | exon | 72377003 | 72377196 | 72377003 | ID=Msa0373370-mRNA-1:exon:16085;Parent=Msa0373370-mRNA-1 |
| chr3_1 | exon | 72377288 | 72377482 | 72377288 | ID=Msa0373370-mRNA-1:exon:16084;Parent=Msa0373370-mRNA-1 |
| chr3_1 | exon | 72377572 | 72377793 | 72377572 | ID=Msa0373370-mRNA-1:exon:16083;Parent=Msa0373370-mRNA-1 |
| chr3_1 | exon | 72378826 | 72379683 | 72378826 | ID=Msa0373370-mRNA-1:exon:16082;Parent=Msa0373370-mRNA-1 |
| chr3_1 | five_prime_UTR | 72379459 | 72379683 | 72379459 | ID=Msa0373370-mRNA-1:five_prime_utr;Parent=Msa0373370-mRNA-1 |
| chr3_1 | CDS | 72378826 | 72379458 | 72378826 | ID=Msa0373370-mRNA-1:cds;Parent=Msa0373370-mRNA-1 |
| chr3_1 | CDS | 72377572 | 72377793 | 72377572 | ID=Msa0373370-mRNA-1:cds;Parent=Msa0373370-mRNA-1 |
| chr3_1 | CDS | 72377288 | 72377482 | 72377288 | ID=Msa0373370-mRNA-1:cds;Parent=Msa0373370-mRNA-1 |
| chr3_1 | CDS | 72377003 | 72377196 | 72377003 | ID=Msa0373370-mRNA-1:cds;Parent=Msa0373370-mRNA-1 |
| chr3_1 | CDS | 72376454 | 72376625 | 72376454 | ID=Msa0373370-mRNA-1:cds;Parent=Msa0373370-mRNA-1 |
| chr3_1 | three_prime_UTR | 72376148 | 72376453 | 72376148 | ID=Msa0373370-mRNA-1:three_prime_utr;Parent=Msa0373370-mRNA-1 |
| Gene Sequence |
| Protein sequence |
