AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0000610

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0000610 MtrunA17_Chr8g0377101 96.725 916 30 0 1 916 1 916 0.0 1834
Msa0000610 MtrunA17_Chr8g0344201 53.436 844 381 8 78 915 89 926 0.0 939
Msa0000610 MtrunA17_Chr3g0118651 47.960 809 402 10 115 916 107 903 0.0 799
Msa0000610 MtrunA17_Chr3g0118641 47.431 837 419 12 89 916 78 902 0.0 790
Msa0000610 MtrunA17_Chr4g0047281 47.275 844 407 13 79 915 82 894 0.0 772
Msa0000610 MtrunA17_Chr3g0118621 46.065 864 450 9 59 916 12 865 0.0 759
Msa0000610 MtrunA17_Chr4g0033171 50.922 705 332 8 217 916 30 725 0.0 747
Msa0000610 MtrunA17_Chr1g0191921 43.793 870 446 17 69 916 10 858 0.0 706
Msa0000610 MtrunA17_Chr7g0272791 43.560 854 448 15 83 916 28 867 0.0 700
Msa0000610 MtrunA17_Chr2g0329911 44.203 828 434 15 100 916 51 861 0.0 687
Msa0000610 MtrunA17_Chr8g0343021 44.322 819 429 14 109 916 62 864 0.0 687
Msa0000610 MtrunA17_Chr2g0329901 45.177 819 421 16 109 916 62 863 0.0 684
Msa0000610 MtrunA17_Chr1g0205611 42.276 861 460 17 80 916 9 856 0.0 682
Msa0000610 MtrunA17_Chr8g0343031 44.336 821 426 15 109 916 63 865 0.0 681
Msa0000610 MtrunA17_Chr8g0342881 42.485 845 449 16 89 916 32 856 0.0 671
Msa0000610 MtrunA17_Chr3g0120071 44.135 827 419 16 109 916 56 858 0.0 667
Msa0000610 MtrunA17_Chr5g0406871 44.987 778 396 15 152 916 109 867 0.0 657
Msa0000610 MtrunA17_Chr8g0342891 44.114 773 411 12 152 916 102 861 0.0 644
Msa0000610 MtrunA17_Chr8g0342921 42.753 821 441 15 109 916 65 869 0.0 642
Msa0000610 MtrunA17_Chr8g0344211 41.697 825 444 16 109 916 64 868 0.0 640
Msa0000610 MtrunA17_Chr8g0342971 43.959 778 406 14 152 916 110 870 0.0 638
Msa0000610 MtrunA17_Chr8g0343011 42.002 819 445 15 109 916 66 865 0.0 630
Msa0000610 MtrunA17_Chr8g0342931 43.864 766 403 12 162 916 1 750 0.0 625
Msa0000610 MtrunA17_Chr8g0342951 42.788 825 435 16 109 916 64 868 0.0 622
Msa0000610 MtrunA17_Chr8g0342901 41.432 782 407 13 145 916 88 828 0.0 602
Msa0000610 MtrunA17_Chr8g0342981 40.580 828 432 18 110 916 35 823 0.0 581
Msa0000610 MtrunA17_Chr8g0338451 40.420 762 428 13 149 899 104 850 0.0 556
Msa0000610 MtrunA17_Chr8g0343001 38.923 817 428 18 113 916 49 807 0.0 543
Msa0000610 MtrunA17_Chr8g0342991 37.990 816 437 17 113 916 49 807 0.0 543
Msa0000610 MtrunA17_Chr6g0471951 39.286 504 263 7 380 879 18 482 1.81e-118 370
Msa0000610 MtrunA17_Chr8g0344241 44.140 401 212 4 522 916 67 461 2.85e-113 355
Msa0000610 MtrunA17_Chr7g0218231 61.345 119 46 0 566 684 14 132 3.82e-48 167
Msa0000610 MtrunA17_Chr6g0468081 60.674 89 35 0 596 684 1 89 8.06e-33 122
Msa0000610 MtrunA17_Chr4g0047271 50.000 92 45 1 824 915 1 91 5.48e-23 94.0
Msa0000610 MtrunA17_Chr4g0033181 31.646 158 98 4 73 223 63 217 8.78e-17 80.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0000610 AT1G67560.1 64.004 914 310 9 10 916 16 917 0.0 1179
Msa0000610 AT1G72520.1 54.804 843 371 7 78 916 90 926 0.0 954
Msa0000610 AT1G17420.1 51.978 910 415 10 23 916 16 919 0.0 941
Msa0000610 AT3G45140.1 46.778 838 425 11 86 916 73 896 0.0 785
Msa0000610 AT3G45140.2 49.148 763 375 8 158 916 1 754 0.0 772
Msa0000610 AT1G55020.1 43.950 876 451 17 62 916 3 859 0.0 722
Msa0000610 AT3G22400.1 41.618 865 467 16 75 916 37 886 0.0 667

Find 254 sgRNAs with CRISPR-Local

Find 488 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCCTTTGTTATTGCTGATTC+TGG 0.123296 1_1:+1760977 None:intergenic
TTCCCCTGACGAAGAGTATT+TGG 0.159442 1_1:-1759167 Msa0000610:CDS
CTAACAAGTTCCTCTTTATC+AGG 0.169266 1_1:+1762161 None:intergenic
AGAATTTACTAAACAATTTC+AGG 0.178920 1_1:+1759098 None:intergenic
TTATATTGATGGTGTTAATT+TGG 0.191367 1_1:-1761754 Msa0000610:CDS
CGCCATAGTGGCTGCAAGTT+TGG 0.215210 1_1:+1761821 None:intergenic
TTCAATAGCTCAATATTTAC+TGG 0.223964 1_1:+1761124 None:intergenic
CAACATGCTGCTATAAATTT+CGG 0.244386 1_1:-1759373 Msa0000610:CDS
AGATTCTACCCATTCTTTAA+TGG 0.248411 1_1:+1759579 None:intergenic
AGAATAAAATATTTAAGTTT+TGG 0.254298 1_1:+1758558 None:intergenic
GCTAGACAAAGTTTAATAAA+TGG 0.267126 1_1:-1760258 Msa0000610:CDS
GGAGGATGATTTCCGATAAA+TGG 0.273826 1_1:+1762638 None:intergenic
TATATTGATGGTGTTAATTT+GGG 0.275468 1_1:-1761753 Msa0000610:CDS
TCATCTCGCGGCACATAAAC+AGG 0.295508 1_1:+1761915 None:intergenic
TTCAAAGGAGTTCCATTTAT+CGG 0.310252 1_1:-1762650 Msa0000610:CDS
CTCTTCCGGCAGATCTTATT+CGG 0.323141 1_1:-1760140 Msa0000610:CDS
CATTCCTTTCAAGTGTTTCT+CGG 0.335053 1_1:-1761790 Msa0000610:CDS
ATTGACAAGCTTTATATTGA+TGG 0.336229 1_1:-1761765 Msa0000610:CDS
GCCATAGTGGCTGCAAGTTT+GGG 0.336382 1_1:+1761822 None:intergenic
TCATACTTACGACAATCATA+TGG 0.339367 1_1:-1759408 Msa0000610:CDS
TGTGTTAGCTGGAAAGAAAA+TGG 0.341273 1_1:+1762597 None:intergenic
AATTTCGGGCAATACCCTTT+TGG 0.341455 1_1:-1759358 Msa0000610:CDS
TAGTGTGGTTGAGGAGTTTG+AGG 0.343973 1_1:-1765842 Msa0000610:CDS
TTGGGAGATGAAGAGAATAA+AGG 0.344498 1_1:-1761735 Msa0000610:CDS
TCCTCTTTGGTATCTAGTTT+AGG 0.345137 1_1:+1759439 None:intergenic
AATTATAAATGCAAGAAATA+AGG 0.345568 1_1:-1759050 Msa0000610:CDS
ATGAAACAGGTCTTCAGTTC+TGG 0.346773 1_1:-1761681 Msa0000610:CDS
ATGCCACAGCACACTGGATT+TGG 0.347347 1_1:-1760598 Msa0000610:CDS
GACATCCCAGCTATTGTAAA+AGG 0.352857 1_1:-1761639 Msa0000610:intron
ACAACATATGGAATGTTTGA+TGG 0.357193 1_1:+1762745 None:intergenic
TACCAAAGTAATGGCTGTTC+AGG 0.357660 1_1:-1759206 Msa0000610:CDS
AGATAGATTTGCTTGGTTGC+GGG 0.363128 1_1:-1761185 Msa0000610:CDS
AAACTAGATCCAACTATCTA+TGG 0.366904 1_1:-1761004 Msa0000610:CDS
AACATGCTGCTATAAATTTC+GGG 0.376754 1_1:-1759372 Msa0000610:CDS
TGACTCATTTGCATAATCAT+TGG 0.376857 1_1:-1759138 Msa0000610:CDS
CGATGCAATTGAATTTGATT+CGG 0.377861 1_1:+1759537 None:intergenic
ATCATCCTCCACGGCTTCAC+TGG 0.380490 1_1:-1762625 Msa0000610:CDS
TCTCCTCCGGTGCCTCTTAT+CGG 0.380723 1_1:+1766065 None:intergenic
GACTCCACGACCAGTTGCTC+CGG 0.383763 1_1:+1758958 None:intergenic
GAGCATGTGGAGATTTGATA+TGG 0.388119 1_1:-1760166 Msa0000610:CDS
ACAATCATATGGGTTGCTTC+AGG 0.388863 1_1:-1759397 Msa0000610:CDS
TTCACAGTGCCAAGAGACTT+TGG 0.393066 1_1:-1762706 Msa0000610:CDS
GGATGTAGCAACTTGTAAAT+AGG 0.393191 1_1:+1760315 None:intergenic
CTATGAGTAGCAATTATATA+TGG 0.396742 1_1:+1760357 None:intergenic
TGATTTCACTCCACCACTCT+TGG 0.397874 1_1:+1759503 None:intergenic
GAACTCCTTTGAACGAAGAT+TGG 0.398217 1_1:+1762660 None:intergenic
TATCCTCGTCGCTGTAGAAC+CGG 0.398710 1_1:-1762110 Msa0000610:CDS
ATTTGATATGGAGTCTCTTC+CGG 0.403194 1_1:-1760154 Msa0000610:CDS
GTTCTACAGCGACGAGGATA+AGG 0.403861 1_1:+1762113 None:intergenic
TGGGAGATGAAGAGAATAAA+GGG 0.405860 1_1:-1761734 Msa0000610:CDS
CTGCAGATGGACTTCTAATC+TGG 0.406327 1_1:-1759606 Msa0000610:CDS
TATGAAAGATAGGTCCTCTT+TGG 0.407757 1_1:+1759426 None:intergenic
TTGAATATGATTCTACTTTG+AGG 0.408949 1_1:+1762550 None:intergenic
GCAGAGTATTCCACAACATA+TGG 0.411374 1_1:+1762733 None:intergenic
TCCCCTGACGAAGAGTATTT+GGG 0.416587 1_1:-1759166 Msa0000610:CDS
ACCCAAACTTGCAGCCACTA+TGG 0.417576 1_1:-1761823 Msa0000610:CDS
TGAATATGATTCTACTTTGA+GGG 0.420439 1_1:+1762551 None:intergenic
TTGTCAGGACCCGGAGCAAC+TGG 0.420733 1_1:-1758968 Msa0000610:CDS
TGAGGAGTTTGAGGATCAGT+TGG 0.424110 1_1:-1765833 Msa0000610:CDS
AGCAATAACAAAGGAACTAC+TGG 0.430247 1_1:-1760969 Msa0000610:CDS
GTTGAGTAGGCAATGATGAT+AGG 0.431532 1_1:+1759236 None:intergenic
GAGATAGATTTGCTTGGTTG+CGG 0.431829 1_1:-1761186 Msa0000610:CDS
TATGGAATGTTTGATGGCTT+CGG 0.432986 1_1:+1762751 None:intergenic
TTTGCAAGGCAAGCCTTAGC+TGG 0.434446 1_1:-1761154 Msa0000610:CDS
GATCATATAGATATACTGTT+GGG 0.436421 1_1:+1758935 None:intergenic
TGGTGGAATAAGCTTGGAAA+AGG 0.441048 1_1:-1760936 Msa0000610:intron
AAGCGGTGCTGCCCAAGAAC+AGG 0.441538 1_1:-1762240 Msa0000610:CDS
AGGGTTGCCTAACTCATTGT+AGG 0.442421 1_1:+1762181 None:intergenic
TCTGGTCTGCCATTAAAGAA+TGG 0.443639 1_1:-1759588 Msa0000610:CDS
CCAAGTTTGAAAAGTAGAAC+TGG 0.445657 1_1:-1759025 Msa0000610:CDS
TTCATCAACTAGTAAATCAT+TGG 0.446490 1_1:-1760535 Msa0000610:intron
GGACCCGGAGCAACTGGTCG+TGG 0.447142 1_1:-1758962 Msa0000610:CDS
AGAAGTCCATCTGCAGCATA+AGG 0.447808 1_1:+1759613 None:intergenic
GTGGAGTGAAATCAAGTGTA+AGG 0.450222 1_1:-1759494 Msa0000610:CDS
ATTGATCAATTCGTTTATGC+TGG 0.453876 1_1:-1758765 Msa0000610:three_prime_UTR
AAAGGAAGCAAAAGTTCATA+AGG 0.455254 1_1:+1758989 None:intergenic
CATACTTACGACAATCATAT+GGG 0.460891 1_1:-1759407 Msa0000610:CDS
TGACCCAAATACTCTTCGTC+AGG 0.461331 1_1:+1759163 None:intergenic
GAGTTCATCTTCTTGATGAA+TGG 0.462879 1_1:+1760764 None:intergenic
TTCATCAATGGTGTTGGTCA+AGG 0.463683 1_1:-1765805 Msa0000610:CDS
TTTACACCACAGGGCATTGA+AGG 0.466878 1_1:+1759655 None:intergenic
TCCATTGTATAGCGCGTATG+AGG 0.467969 1_1:+1760294 None:intergenic
CATTACCAATCTTCGTTCAA+AGG 0.468216 1_1:-1762665 Msa0000610:CDS
CTCATGAGGGTAGGACGGTT+AGG 0.468763 1_1:+1759325 None:intergenic
AGAGAAAGCTCGATAGCTAT+AGG 0.468931 1_1:+1760674 None:intergenic
GAACTTGTTAGACCAGTCAT+TGG 0.470623 1_1:-1762149 Msa0000610:CDS
CTGGTCTGCCATTAAAGAAT+GGG 0.472539 1_1:-1759587 Msa0000610:CDS
GGATCTAGTTTGCTGCGGAT+TGG 0.473071 1_1:+1761016 None:intergenic
AATGAAAGTTAGTGTGGTTG+AGG 0.473822 1_1:-1765851 Msa0000610:CDS
AGTAAATATTGAGCTATTGA+AGG 0.476774 1_1:-1761122 Msa0000610:intron
TAATCATTGGATCAATGATC+AGG 0.480482 1_1:-1759125 Msa0000610:CDS
TTGGTAGCTTGAAGTTGAGT+AGG 0.480940 1_1:+1759223 None:intergenic
TACTAGACTTGAGGAGATAG+AGG 0.484216 1_1:-1759074 Msa0000610:CDS
TTAGGCACATATCCTCCAAA+AGG 0.484226 1_1:+1759343 None:intergenic
TCGATCAATTTCGATTGCCT+TGG 0.485249 1_1:-1758914 Msa0000610:three_prime_UTR
ACAAAGTTTAATAAATGGAG+GGG 0.485869 1_1:-1760253 Msa0000610:CDS
AAACAAGATGCATTTGCTGC+TGG 0.486321 1_1:-1761876 Msa0000610:CDS
TTGCTCACTTTGCTGTCCAC+CGG 0.486780 1_1:+1765958 None:intergenic
CAGTTGGAGTATTTCATCAA+TGG 0.487178 1_1:-1765817 Msa0000610:CDS
GGTGGGAAAAGTGATGAAAC+AGG 0.490922 1_1:-1761694 Msa0000610:CDS
GAACTACTGGAGCAAGAACT+TGG 0.493456 1_1:-1760956 Msa0000610:CDS
ATAAACGAATTGATCAATAT+CGG 0.493904 1_1:+1758770 None:intergenic
GGAGCGAGTAGGAGGTCTTC+CGG 0.493994 1_1:+1762091 None:intergenic
TTGCTTCCTTTGTCAGGACC+CGG 0.497544 1_1:-1758977 Msa0000610:CDS
CGAATCAAATTCAATTGCAT+CGG 0.498807 1_1:-1759536 Msa0000610:CDS
GAGGCATAAGCTTTCCTCTC+GGG 0.499830 1_1:+1760737 None:intergenic
TTGTAATGAAGAGAATCGTC+CGG 0.500870 1_1:+1760714 None:intergenic
GTGTTAGCTGGAAAGAAAAT+GGG 0.502615 1_1:+1762598 None:intergenic
CTCTCATGATCTCCAATGAC+TGG 0.509818 1_1:+1762137 None:intergenic
CAAGACTACAACGTCGTCTC+CGG 0.510717 1_1:-1765977 Msa0000610:CDS
CACTTCAAATCATAAGTTTG+AGG 0.511119 1_1:+1758394 None:intergenic
TACTGGATTGACTCCAGCTA+AGG 0.511465 1_1:+1761141 None:intergenic
GAGTATTTCATCAATGGTGT+TGG 0.511662 1_1:-1765811 Msa0000610:CDS
ATAATAGAAAATCTCTTGGT+GGG 0.512813 1_1:-1761711 Msa0000610:CDS
TTGTTATTGCTGATTCTGGA+GGG 0.513518 1_1:+1760981 None:intergenic
TATGCTCCCTACAATGAGTT+AGG 0.514068 1_1:-1762188 Msa0000610:CDS
GAATGAATCCATGTGTTAGC+TGG 0.514422 1_1:+1762586 None:intergenic
GCCAAGAGACTTTGGATCCC+CGG 0.515086 1_1:-1762698 Msa0000610:CDS
AGAACTTGGTGGAATAAGCT+TGG 0.516371 1_1:-1760942 Msa0000610:CDS
CAAGATCTATGGTCAAGGTA+GGG 0.517590 1_1:-1758718 Msa0000610:three_prime_UTR
TTGTCGTAAGTATGAAAGAT+AGG 0.519427 1_1:+1759416 None:intergenic
TAGTCCTGGAAAATATGCCT+TGG 0.520574 1_1:-1760211 Msa0000610:CDS
CGCGGCACATAAACAGGGTG+TGG 0.521515 1_1:+1761921 None:intergenic
GCCGGGGATCCAAAGTCTCT+TGG 0.522118 1_1:+1762697 None:intergenic
CGTCGGTGTTCTCCGATAAG+AGG 0.523684 1_1:-1766077 Msa0000610:CDS
TGGTAATGAGAATAGCAGCC+GGG 0.523897 1_1:+1762680 None:intergenic
ATTCTCTTCATTACAAAGGC+CGG 0.525411 1_1:-1760707 Msa0000610:CDS
TCATCAATGGTGTTGGTCAA+GGG 0.527017 1_1:-1765804 Msa0000610:CDS
TAAAAGGAATTGTATCTCCA+AGG 0.530844 1_1:+1758585 None:intergenic
AGGGATAATAGAAAATCTCT+TGG 0.530957 1_1:-1761715 Msa0000610:CDS
TACCTCCGAATAAGATCTGC+CGG 0.531248 1_1:+1760135 None:intergenic
GAAGTCCATCTGCAGCATAA+GGG 0.532536 1_1:+1759614 None:intergenic
ACTCCACGACCAGTTGCTCC+GGG 0.533633 1_1:+1758959 None:intergenic
GTCCTGAACAGCCATTACTT+TGG 0.533810 1_1:+1759204 None:intergenic
ATCAAACATTCCATATGTTG+TGG 0.534612 1_1:-1762743 Msa0000610:CDS
CGATCATATAGATATACTGT+TGG 0.534665 1_1:+1758934 None:intergenic
CATGTTAGCTCAAATGATGC+TGG 0.535268 1_1:-1760560 Msa0000610:CDS
GTTAGGCAACCCTGATAAAG+AGG 0.537690 1_1:-1762171 Msa0000610:CDS
GACGGCGATCGGAGGAGTAA+AGG 0.538502 1_1:+1766096 None:intergenic
TCTGGAGGGCCATAGATAGT+TGG 0.541049 1_1:+1760995 None:intergenic
TAACAAGTTCCTCTTTATCA+GGG 0.541380 1_1:+1762162 None:intergenic
CGGAGAACACCGACGGCGAT+CGG 0.542880 1_1:+1766085 None:intergenic
GAATTGTATCTCCAAGGGGT+TGG 0.543585 1_1:+1758591 None:intergenic
AAAAGGAATTGTATCTCCAA+GGG 0.545169 1_1:+1758586 None:intergenic
TTGAAAAGTAGAACTGGTGC+AGG 0.545990 1_1:-1759019 Msa0000610:CDS
ACAAGATCTATGGTCAAGGT+AGG 0.546021 1_1:-1758719 Msa0000610:three_prime_UTR
CATGACTTATATGCGACATA+TGG 0.549105 1_1:+1758629 None:intergenic
ACCGGAGGAGAATTATTTCA+CGG 0.549851 1_1:-1766053 Msa0000610:CDS
GATAATAGAAAATCTCTTGG+TGG 0.550624 1_1:-1761712 Msa0000610:CDS
ACAAAAGAAATGAACCTTGG+TGG 0.550976 1_1:-1759462 Msa0000610:CDS
GACAAAGTTTAATAAATGGA+GGG 0.552909 1_1:-1760254 Msa0000610:CDS
AAGATCTATGGTCAAGGTAG+GGG 0.553229 1_1:-1758717 Msa0000610:three_prime_UTR
AAGCAACGGTGAAATGATAG+AGG 0.555163 1_1:-1765902 Msa0000610:CDS
ACCGTGAAATAATTCTCCTC+CGG 0.556961 1_1:+1766052 None:intergenic
AGACAAAGTTTAATAAATGG+AGG 0.557264 1_1:-1760255 Msa0000610:CDS
TAAATTCTCTACTAGACTTG+AGG 0.557721 1_1:-1759083 Msa0000610:CDS
TTGAGAATAATAGCCTTACA+AGG 0.559596 1_1:-1758690 Msa0000610:three_prime_UTR
TTACAGGAGATAGATTTGCT+TGG 0.559693 1_1:-1761192 Msa0000610:intron
TCCTCATACGCGCTATACAA+TGG 0.560220 1_1:-1760295 Msa0000610:CDS
TTGCTAAGCACAAGGGGAAG+CGG 0.561266 1_1:-1762257 Msa0000610:CDS
TTTGTTATTGCTGATTCTGG+AGG 0.561343 1_1:+1760980 None:intergenic
AGAGGAAAGCTTATGCCTCC+CGG 0.561811 1_1:-1760733 Msa0000610:CDS
AAAGAAAATGAAAGTTAGTG+TGG 0.562354 1_1:-1765857 Msa0000610:CDS
GGAGGCATAAGCTTTCCTCT+CGG 0.565442 1_1:+1760736 None:intergenic
GACTACCCTTATGCTGCAGA+TGG 0.565485 1_1:-1759619 Msa0000610:CDS
TGTAATGAAGAGAATCGTCC+GGG 0.566537 1_1:+1760715 None:intergenic
TCCAGTGTGCTGTGGCATCA+TGG 0.566754 1_1:+1760603 None:intergenic
GTTAAGGACTCATGCATGCA+TGG 0.567574 1_1:-1760382 Msa0000610:CDS
ACTTCAAGCTACCAAAGTAA+TGG 0.567833 1_1:-1759215 Msa0000610:CDS
TTATTTCACGGTCATCTGAA+CGG 0.569067 1_1:-1766041 Msa0000610:CDS
GCTTCACTAAGCCAACCCCT+TGG 0.569548 1_1:-1758602 Msa0000610:three_prime_UTR
TGCGGGACAACGAATTTGCA+AGG 0.570627 1_1:-1761168 Msa0000610:CDS
TGGGTCCTCCAGTGAAGCCG+TGG 0.572006 1_1:+1762617 None:intergenic
ATACCAGGTGGTGTTTGTGA+TGG 0.574236 1_1:+1762302 None:intergenic
GGAAGACCTCCTACTCGCTC+CGG 0.576419 1_1:-1762089 Msa0000610:intron
GAATGTGCTTTCCAGGGGCA+TGG 0.578236 1_1:-1759689 Msa0000610:intron
TGGAATCTTACGTAGGAGGT+TGG 0.578287 1_1:-1762777 Msa0000610:CDS
GGGTTGCCTAACTCATTGTA+GGG 0.579957 1_1:+1762182 None:intergenic
ATCCTCCACGGCTTCACTGG+AGG 0.580284 1_1:-1762622 Msa0000610:CDS
GACTACAACGTCGTCTCCGG+TGG 0.584840 1_1:-1765974 Msa0000610:CDS
TATCTAACAAACGAGATATG+TGG 0.586072 1_1:+1758439 None:intergenic
TTGGTAATGAGAATAGCAGC+CGG 0.587861 1_1:+1762679 None:intergenic
CAAGTTTGGGTATAAGATTG+TGG 0.588199 1_1:+1761835 None:intergenic
TAGGCACATATCCTCCAAAA+GGG 0.592242 1_1:+1759344 None:intergenic
TTTACTCCTCCGATCGCCGT+CGG 0.595168 1_1:-1766094 Msa0000610:CDS
GTTAGTGAACTCATAGACCC+TGG 0.596456 1_1:-1765766 Msa0000610:intron
ACTCTACCGGAGCGAGTAGG+AGG 0.596562 1_1:+1762083 None:intergenic
TACAAAGTAGCTCGAGTGGT+GGG 0.598092 1_1:-1765927 Msa0000610:CDS
CTTGTGCAAAATATACATGA+AGG 0.598263 1_1:+1758737 None:intergenic
CAAGTTATATTATAATGCCA+AGG 0.600956 1_1:+1758897 None:intergenic
TTTACACTGACAGGCTATGG+AGG 0.600987 1_1:-1760828 Msa0000610:intron
CAAAGTTTAATAAATGGAGG+GGG 0.601423 1_1:-1760252 Msa0000610:CDS
GACGATTCTCTTCATTACAA+AGG 0.603810 1_1:-1760711 Msa0000610:CDS
CTGACAAAAGAAATGAACCT+TGG 0.604053 1_1:-1759465 Msa0000610:CDS
CAGCAGCTTACAAGAGCATG+TGG 0.604299 1_1:-1760179 Msa0000610:CDS
GCCATGATGCCACAGCACAC+TGG 0.604888 1_1:-1760604 Msa0000610:CDS
AGCTGCTGAACTAAGCTCCA+AGG 0.606766 1_1:+1760194 None:intergenic
TCGAGTGGTGGGAGAAGCAA+CGG 0.607804 1_1:-1765916 Msa0000610:CDS
TGCGGCGAAGTAAGTGTCTG+AGG 0.607972 1_1:+1760650 None:intergenic
TTGCACAAGATCTATGGTCA+AGG 0.609401 1_1:-1758723 Msa0000610:three_prime_UTR
AGCTATAGGACGCAGAACAC+CGG 0.609809 1_1:+1760688 None:intergenic
TTACCATCACAAACACCACC+TGG 0.612280 1_1:-1762305 Msa0000610:CDS
AGCGTGGAATCTTACGTAGG+AGG 0.612694 1_1:-1762781 Msa0000610:CDS
TGTTCTCCGATAAGAGGCAC+CGG 0.614102 1_1:-1766071 Msa0000610:CDS
TTACAAAGTAGCTCGAGTGG+TGG 0.614453 1_1:-1765928 Msa0000610:CDS
GGGGTTGGCTTAGTGAAGCA+TGG 0.616417 1_1:+1758606 None:intergenic
GACCCAAATACTCTTCGTCA+GGG 0.617656 1_1:+1759164 None:intergenic
TCTTCAAAAGTTTCATCTCG+CGG 0.618364 1_1:+1761903 None:intergenic
AGAACACCGACGGCGATCGG+AGG 0.619515 1_1:+1766088 None:intergenic
ATGTTGAGCTCCAAGAGTGG+TGG 0.620332 1_1:-1759513 Msa0000610:CDS
GTTGCTCCGGGTCCTGACAA+AGG 0.621179 1_1:+1758971 None:intergenic
CTTCCAAATCCAGTGTGCTG+TGG 0.622388 1_1:+1760595 None:intergenic
GTGAGGATTTGCTAAGCACA+AGG 0.622715 1_1:-1762265 Msa0000610:CDS
ACTAAAATAGTGTATCAGAT+CGG 0.623685 1_1:+1758855 None:intergenic
TTATCGGAAATCATCCTCCA+CGG 0.626060 1_1:-1762634 Msa0000610:CDS
CTACTGGAGCAAGAACTTGG+TGG 0.628297 1_1:-1760953 Msa0000610:CDS
ATCATATAGATATACTGTTG+GGG 0.629144 1_1:+1758936 None:intergenic
TTACACCACAGGGCATTGAA+GGG 0.629797 1_1:+1759656 None:intergenic
GTGGACAGCAAAGTGAGCAA+TGG 0.630531 1_1:-1765955 Msa0000610:CDS
TTCCGGCAGATCTTATTCGG+AGG 0.631003 1_1:-1760137 Msa0000610:intron
ATCTCCGAGAAACACTTGAA+AGG 0.632975 1_1:+1761786 None:intergenic
GAGGATTTGCTAAGCACAAG+GGG 0.635557 1_1:-1762263 Msa0000610:CDS
TCGTTACAAAGTAGCTCGAG+TGG 0.638320 1_1:-1765931 Msa0000610:CDS
TCAATTCTAGTCTCACATCG+TGG 0.638934 1_1:+1761948 None:intergenic
GGAAGCAAAAGTTCATAAGG+AGG 0.642933 1_1:+1758992 None:intergenic
GTCCTCCAGTGAAGCCGTGG+AGG 0.643200 1_1:+1762620 None:intergenic
AGGTCTTCAGTTCTGGAGAG+CGG 0.643829 1_1:-1761674 Msa0000610:CDS
CATCTCGCGGCACATAAACA+GGG 0.644374 1_1:+1761916 None:intergenic
CGGATGTTGAGCTCCAAGAG+TGG 0.647233 1_1:-1759516 Msa0000610:CDS
AATGTCTGAATTCGCCATAG+TGG 0.648310 1_1:+1761809 None:intergenic
CTCTTATCGGAGAACACCGA+CGG 0.651240 1_1:+1766078 None:intergenic
TGGAGTGAAATCAAGTGTAA+GGG 0.653346 1_1:-1759493 Msa0000610:CDS
ACCCAAATACTCTTCGTCAG+GGG 0.656711 1_1:+1759165 None:intergenic
GTATCTAGTTTAGGCCACCA+AGG 0.657149 1_1:+1759448 None:intergenic
TCCAGAATCAGCAATAACAA+AGG 0.658477 1_1:-1760978 Msa0000610:CDS
AGATGAACTCTTTGCCCGAG+AGG 0.664250 1_1:-1760751 Msa0000610:CDS
CAAGTTCAAGCAGTGATCAG+CGG 0.664377 1_1:-1766009 Msa0000610:CDS
GTTCAAGCAGTGATCAGCGG+CGG 0.669499 1_1:-1766006 Msa0000610:CDS
TGAACTCTACCGGAGCGAGT+AGG 0.669590 1_1:+1762080 None:intergenic
TGAGGATTTGCTAAGCACAA+GGG 0.669756 1_1:-1762264 Msa0000610:CDS
GGTAATGAGAATAGCAGCCG+GGG 0.674924 1_1:+1762681 None:intergenic
AATAGAAAAGTTTACACACA+AGG 0.676340 1_1:-1760626 Msa0000610:CDS
TAGTTGGATCTAGTTTGCTG+CGG 0.682588 1_1:+1761011 None:intergenic
TGAATGGCAAAAGCATGTCA+TGG 0.684212 1_1:+1760780 None:intergenic
TGAGAATAATAGCCTTACAA+GGG 0.685149 1_1:-1758689 Msa0000610:three_prime_UTR
AAAGGAATTGTATCTCCAAG+GGG 0.689244 1_1:+1758587 None:intergenic
TCTCCGATAAGAGGCACCGG+AGG 0.691008 1_1:-1766068 Msa0000610:CDS
GCCTAAACTAGATACCAAAG+AGG 0.696249 1_1:-1759440 Msa0000610:CDS
AATGAAGAGAATCGTCCGGG+AGG 0.719002 1_1:+1760718 None:intergenic
AAAAGCGTGGAATCTTACGT+AGG 0.726945 1_1:-1762784 Msa0000610:CDS
TTTCACGGTCATCTGAACGG+CGG 0.730792 1_1:-1766038 Msa0000610:CDS
CTTCCGGTTCTACAGCGACG+AGG 0.730830 1_1:+1762107 None:intergenic
AATGATAGAGGTGAAAGCAG+TGG 0.733351 1_1:-1765890 Msa0000610:CDS
GAAGACCCTTCAATGCCCTG+TGG 0.756949 1_1:-1759661 Msa0000610:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTCAAAACAATAAAATAA+TGG + chr1_1:1759219-1759238 None:intergenic 10.0%
!!! TTACATAGAATTATTTTAAA+AGG - chr1_1:1759267-1759286 Msa0000610:CDS 10.0%
!!! TACATAGAATTATTTTAAAA+GGG - chr1_1:1759268-1759287 Msa0000610:CDS 10.0%
!! TAGAATAAAAAATAAAAGAA+GGG + chr1_1:1760455-1760474 None:intergenic 10.0%
!! TTAGAATAAAAAATAAAAGA+AGG + chr1_1:1760456-1760475 None:intergenic 10.0%
!! ATATATTAATAGTTTGAATT+TGG + chr1_1:1761185-1761204 None:intergenic 10.0%
!! CAATAATAAATAATATATGA+TGG + chr1_1:1764708-1764727 None:intergenic 10.0%
!!! AGAATAAAATATTTAAGTTT+TGG + chr1_1:1766058-1766077 None:intergenic 10.0%
!!! TTCATTTATACAATTTTTTA+TGG - chr1_1:1766136-1766155 Msa0000610:exon 10.0%
!!! AAATAATGGATTTTAAAAAG+AGG + chr1_1:1759001-1759020 None:intergenic 15.0%
!!! CACAAATTAATTTTTTTCTT+TGG + chr1_1:1759962-1759981 None:intergenic 15.0%
!!! CAAGTTTAAAGTTTAAATTT+AGG + chr1_1:1760031-1760050 None:intergenic 15.0%
!!! ACTGTATTTATCTTTATTTT+AGG + chr1_1:1760647-1760666 None:intergenic 15.0%
!!! TAATTTCACACATTTTTATA+TGG - chr1_1:1760669-1760688 Msa0000610:CDS 15.0%
!!! GAAATTGAAAAGATTTTAAA+TGG + chr1_1:1760968-1760987 None:intergenic 15.0%
!!! ATCAAATTGTTTTTTATTAG+AGG + chr1_1:1761112-1761131 None:intergenic 15.0%
!!! ATTGTGGATAATTTTTTTTA+GGG + chr1_1:1761387-1761406 None:intergenic 15.0%
!!! AATTGTGGATAATTTTTTTT+AGG + chr1_1:1761388-1761407 None:intergenic 15.0%
!! TATTATTATCATCATGTTAT+AGG + chr1_1:1761708-1761727 None:intergenic 15.0%
!! CAAAATCTAAAAATTCAAAA+TGG + chr1_1:1762585-1762604 None:intergenic 15.0%
!!! CATTTTGAATTTTTAGATTT+TGG - chr1_1:1762583-1762602 Msa0000610:CDS 15.0%
!! ATAAAAAATGTAACACAATT+AGG - chr1_1:1764735-1764754 Msa0000610:intron 15.0%
!! TAAAAAATGTAACACAATTA+GGG - chr1_1:1764736-1764755 Msa0000610:intron 15.0%
!! AATTATAAATGCAAGAAATA+AGG - chr1_1:1765563-1765582 Msa0000610:intron 15.0%
!!! TTTAAGTTTTGGTAAATAAA+AGG + chr1_1:1766047-1766066 None:intergenic 15.0%
!! AGATGTGAAAAATAAAAAAT+GGG + chr1_1:1766116-1766135 None:intergenic 15.0%
!! AAGATGTGAAAAATAAAAAA+TGG + chr1_1:1766117-1766136 None:intergenic 15.0%
!! TGATGAATTAAAAGAAGAAA+AGG + chr1_1:1758939-1758958 None:intergenic 20.0%
!!! CTTCTTTTAATTCATCAAAA+AGG - chr1_1:1758942-1758961 Msa0000610:CDS 20.0%
!! AATGTTAATCATTTCTTTAG+AGG - chr1_1:1759552-1759571 Msa0000610:CDS 20.0%
!! ATGTTAATCATTTCTTTAGA+GGG - chr1_1:1759553-1759572 Msa0000610:CDS 20.0%
!! TGAAATGGTATAATGTTAAT+TGG + chr1_1:1759741-1759760 None:intergenic 20.0%
!! ATATTCTAACTAAATCAATC+TGG - chr1_1:1759932-1759951 Msa0000610:intron 20.0%
!! CTTTAGATAGTAAGTTATTA+TGG + chr1_1:1760310-1760329 None:intergenic 20.0%
!! GTAACTTATCGTTTAAATTA+GGG + chr1_1:1761448-1761467 None:intergenic 20.0%
!! TGTAACTTATCGTTTAAATT+AGG + chr1_1:1761449-1761468 None:intergenic 20.0%
!! TACTTATATTCGAGAATAAA+AGG + chr1_1:1761478-1761497 None:intergenic 20.0%
!! AAAAATGTATCAATGTATAG+TGG - chr1_1:1761501-1761520 Msa0000610:intron 20.0%
!!! GTTTTTTCTTACTTTTTTTG+TGG - chr1_1:1762557-1762576 Msa0000610:CDS 20.0%
!!! TTATATTGATGGTGTTAATT+TGG - chr1_1:1762859-1762878 Msa0000610:intron 20.0%
!!! TATATTGATGGTGTTAATTT+GGG - chr1_1:1762860-1762879 Msa0000610:intron 20.0%
!! TCAACTTGAAACTAAAATTT+GGG + chr1_1:1763151-1763170 None:intergenic 20.0%
!! TTCAACTTGAAACTAAAATT+TGG + chr1_1:1763152-1763171 None:intergenic 20.0%
!!! ACATTTTTTTTTACTGTACT+AGG - chr1_1:1763321-1763340 Msa0000610:intron 20.0%
!! ACAAAGTTATATTGTATTCA+AGG + chr1_1:1763355-1763374 None:intergenic 20.0%
!!! CTTTTTTATTCATACCAATT+AGG - chr1_1:1763521-1763540 Msa0000610:intron 20.0%
!! AAAAAATGTAACACAATTAG+GGG - chr1_1:1764737-1764756 Msa0000610:intron 20.0%
!! ATGCAATTGAAAATTTGAAA+CGG - chr1_1:1764782-1764801 Msa0000610:intron 20.0%
!!! TATTAACAGATTGCTATTAA+AGG + chr1_1:1764897-1764916 None:intergenic 20.0%
!! AGAATTTACTAAACAATTTC+AGG + chr1_1:1765518-1765537 None:intergenic 20.0%
!! ATAAACGAATTGATCAATAT+CGG + chr1_1:1765846-1765865 None:intergenic 20.0%
! AAAGAAAATGAAAGTTAGTG+TGG - chr1_1:1758756-1758775 Msa0000610:three_prime_UTR 25.0%
! TATTAAGAAGAAACAAACCA+GGG + chr1_1:1758867-1758886 None:intergenic 25.0%
! ATATTAAGAAGAAACAAACC+AGG + chr1_1:1758868-1758887 None:intergenic 25.0%
! TCGATATGTCATGAAAATAA+TGG + chr1_1:1759015-1759034 None:intergenic 25.0%
! TACATTGACAAAGAAAATTG+AGG - chr1_1:1759144-1759163 Msa0000610:CDS 25.0%
! TAACATTATACCATTTCACT+TGG - chr1_1:1759743-1759762 Msa0000610:intron 25.0%
!!! TTGATGATTAGTTTCATAAC+AGG - chr1_1:1759850-1759869 Msa0000610:intron 25.0%
!!! AATTAGTATTTTGGACTCTT+AGG + chr1_1:1759885-1759904 None:intergenic 25.0%
!! ACTCAACACAATTAGTATTT+TGG + chr1_1:1759894-1759913 None:intergenic 25.0%
!! TTATGCTGATTGAATTTACA+TGG + chr1_1:1760006-1760025 None:intergenic 25.0%
!! GTTTAACCTTTTATCGAATT+TGG - chr1_1:1760147-1760166 Msa0000610:CDS 25.0%
! TGCATCAAAAATTGAAGTAT+TGG + chr1_1:1760271-1760290 None:intergenic 25.0%
!!! TTAAACTTTTTTGGGTGTAA+TGG - chr1_1:1760404-1760423 Msa0000610:intron 25.0%
!! TTTAAATGGAAAGTACGTAT+TGG - chr1_1:1760537-1760556 Msa0000610:CDS 25.0%
! AAATAAGTAAAATCCACAGT+CGG + chr1_1:1760862-1760881 None:intergenic 25.0%
!! ACTGTGGATTTTACTTATTT+TGG - chr1_1:1760862-1760881 Msa0000610:intron 25.0%
!! TGAAAAGATTTTAAATGGAG+AGG + chr1_1:1760963-1760982 None:intergenic 25.0%
!! CATGTAGTTAATTTTTATGC+TGG + chr1_1:1761276-1761295 None:intergenic 25.0%
!!! TTTTTTTAGGGAATGAATTG+TGG + chr1_1:1761375-1761394 None:intergenic 25.0%
!!! TTTAAATTAGGGTTTTGAGA+TGG + chr1_1:1761437-1761456 None:intergenic 25.0%
!! ACATTTTCAGCTACTAATAA+TGG - chr1_1:1761805-1761824 Msa0000610:CDS 25.0%
! TGAATATGATTCTACTTTGA+GGG + chr1_1:1762065-1762084 None:intergenic 25.0%
! TTGAATATGATTCTACTTTG+AGG + chr1_1:1762066-1762085 None:intergenic 25.0%
!! ATTGACAAGCTTTATATTGA+TGG - chr1_1:1762848-1762867 Msa0000610:intron 25.0%
! ATAATAGAAAATCTCTTGGT+GGG - chr1_1:1762902-1762921 Msa0000610:intron 25.0%
! CAACTTGAAACTAAAATTTG+GGG + chr1_1:1763150-1763169 None:intergenic 25.0%
!!! TAGACATGAAGAATTGATTT+TGG + chr1_1:1763223-1763242 None:intergenic 25.0%
!! CAATTCTTCATGTCTAAAAT+CGG - chr1_1:1763227-1763246 Msa0000610:intron 25.0%
! TGAAACCAAACATGTTAAAA+AGG - chr1_1:1763268-1763287 Msa0000610:intron 25.0%
! AAAAAAAAATGTGACTCATG+AGG + chr1_1:1763313-1763332 None:intergenic 25.0%
! TTCAATAGCTCAATATTTAC+TGG + chr1_1:1763492-1763511 None:intergenic 25.0%
! AGTAAATATTGAGCTATTGA+AGG - chr1_1:1763491-1763510 Msa0000610:intron 25.0%
! ACAAACAAACAAACAAAACA+TGG + chr1_1:1763709-1763728 None:intergenic 25.0%
!! GTGTAAACTTTTCTATTTTG+CGG + chr1_1:1763984-1764003 None:intergenic 25.0%
! AATAGAAAAGTTTACACACA+AGG - chr1_1:1763987-1764006 Msa0000610:intron 25.0%
! TTCATCAACTAGTAAATCAT+TGG - chr1_1:1764078-1764097 Msa0000610:intron 25.0%
! TAAATCATTGGTAAGACAAT+TGG - chr1_1:1764090-1764109 Msa0000610:intron 25.0%
! AATGACTTGATCAAAAGAAA+TGG - chr1_1:1764148-1764167 Msa0000610:intron 25.0%
! TTAACCTGCATATTACATAT+TGG + chr1_1:1764216-1764235 None:intergenic 25.0%
! AATATGTAATATGCAGGTTA+AGG - chr1_1:1764215-1764234 Msa0000610:intron 25.0%
! CTATGAGTAGCAATTATATA+TGG + chr1_1:1764259-1764278 None:intergenic 25.0%
! GCTAGACAAAGTTTAATAAA+TGG - chr1_1:1764355-1764374 Msa0000610:intron 25.0%
! AGACAAAGTTTAATAAATGG+AGG - chr1_1:1764358-1764377 Msa0000610:intron 25.0%
! GACAAAGTTTAATAAATGGA+GGG - chr1_1:1764359-1764378 Msa0000610:intron 25.0%
! ACAAAGTTTAATAAATGGAG+GGG - chr1_1:1764360-1764379 Msa0000610:intron 25.0%
! AATGATACCATATTCATGAA+TGG + chr1_1:1764570-1764589 None:intergenic 25.0%
! AACAAAGGTTGAACTTAAAA+TGG + chr1_1:1764855-1764874 None:intergenic 25.0%
! TATATATGTCCTATGAACAA+AGG + chr1_1:1764870-1764889 None:intergenic 25.0%
!! AATCAGAATCATTTTCTTGA+GGG + chr1_1:1765323-1765342 None:intergenic 25.0%
!! TAATCAGAATCATTTTCTTG+AGG + chr1_1:1765324-1765343 None:intergenic 25.0%
! ATCATATAGATATACTGTTG+GGG + chr1_1:1765680-1765699 None:intergenic 25.0%
! GATCATATAGATATACTGTT+GGG + chr1_1:1765681-1765700 None:intergenic 25.0%
! CAAGTTATATTATAATGCCA+AGG + chr1_1:1765719-1765738 None:intergenic 25.0%
! ACTAAAATAGTGTATCAGAT+CGG + chr1_1:1765761-1765780 None:intergenic 25.0%
!! TATATTTTGCACAAGATCTA+TGG - chr1_1:1765884-1765903 Msa0000610:CDS 25.0%
AAAGAAGAAAAGGAGAGATA+TGG + chr1_1:1758929-1758948 None:intergenic 30.0%
! AAAAAAGTGTGTGATTGTGT+GGG + chr1_1:1758973-1758992 None:intergenic 30.0%
! AAAAAAAGTGTGTGATTGTG+TGG + chr1_1:1758974-1758993 None:intergenic 30.0%
ATATTCCGCTGAACTATTTA+GGG + chr1_1:1759402-1759421 None:intergenic 30.0%
! ACTTCTTTTACCAAGTGAAA+TGG + chr1_1:1759756-1759775 None:intergenic 30.0%
! TCTAAAGTCATTCATTTGAG+AGG - chr1_1:1759787-1759806 Msa0000610:intron 30.0%
!! TCCATTATTTTCGTTTTTGC+AGG + chr1_1:1760074-1760093 None:intergenic 30.0%
AGATGACCAAATTCGATAAA+AGG + chr1_1:1760156-1760175 None:intergenic 30.0%
!! TGTCGTAAGAGCTTTATTTA+AGG - chr1_1:1760212-1760231 Msa0000610:CDS 30.0%
ATAAGTACTCTAATAGCACT+CGG + chr1_1:1760339-1760358 None:intergenic 30.0%
ATTTATCCAGTAAGAAAGAG+AGG - chr1_1:1760363-1760382 Msa0000610:CDS 30.0%
TTCCAGTAGCACAATTTAAA+TGG - chr1_1:1760523-1760542 Msa0000610:intron 30.0%
TTCCATTTAAATTGTGCTAC+TGG + chr1_1:1760528-1760547 None:intergenic 30.0%
!! TCAATTTCTTTCGTTTTGAG+AGG - chr1_1:1760980-1760999 Msa0000610:CDS 30.0%
ATCAAAAACCTGAAGATCAA+CGG + chr1_1:1761062-1761081 None:intergenic 30.0%
ATTGATCCACAACTATTCAA+GGG + chr1_1:1761250-1761269 None:intergenic 30.0%
AATTGATCCACAACTATTCA+AGG + chr1_1:1761251-1761270 None:intergenic 30.0%
ACTACATGTGTAAATTTGCA+AGG - chr1_1:1761288-1761307 Msa0000610:intron 30.0%
CTACATGTGTAAATTTGCAA+GGG - chr1_1:1761289-1761308 Msa0000610:intron 30.0%
ACCAACAAATTAATCCAAGT+GGG - chr1_1:1761568-1761587 Msa0000610:intron 30.0%
AATCTAGTCTCGTCAAAAAA+AGG + chr1_1:1761755-1761774 None:intergenic 30.0%
! TACTAATAATGGAAAAAGCG+TGG - chr1_1:1761816-1761835 Msa0000610:CDS 30.0%
ACAACATATGGAATGTTTGA+TGG + chr1_1:1761871-1761890 None:intergenic 30.0%
ATCAAACATTCCATATGTTG+TGG - chr1_1:1761870-1761889 Msa0000610:CDS 30.0%
TTCAAAGGAGTTCCATTTAT+CGG - chr1_1:1761963-1761982 Msa0000610:intron 30.0%
! TTTTCACAGTACTACTTACT+TGG + chr1_1:1762092-1762111 None:intergenic 30.0%
CATAACATACACTTCTTCAA+AGG + chr1_1:1762235-1762254 None:intergenic 30.0%
AACAACATGCTAAGTTAAGT+TGG + chr1_1:1762262-1762281 None:intergenic 30.0%
! TTTTGTTGCATGGATTTGAT+AGG - chr1_1:1762280-1762299 Msa0000610:CDS 30.0%
! TGATTTTCTTTCCTGTTCTT+GGG + chr1_1:1762387-1762406 None:intergenic 30.0%
TAACAAGTTCCTCTTTATCA+GGG + chr1_1:1762454-1762473 None:intergenic 30.0%
AGAAAAAACATGAACTCTAC+CGG + chr1_1:1762546-1762565 None:intergenic 30.0%
!!! AGTGCTCTAAATGTGTTTTT+TGG - chr1_1:1762627-1762646 Msa0000610:CDS 30.0%
AGGGATAATAGAAAATCTCT+TGG - chr1_1:1762898-1762917 Msa0000610:intron 30.0%
GATAATAGAAAATCTCTTGG+TGG - chr1_1:1762901-1762920 Msa0000610:intron 30.0%
!! AACATGTTTGGTTTCACTTT+TGG + chr1_1:1763264-1763283 None:intergenic 30.0%
! AAACATGTTAAAAAGGCATG+CGG - chr1_1:1763275-1763294 Msa0000610:intron 30.0%
AAACTAGATCCAACTATCTA+TGG - chr1_1:1763609-1763628 Msa0000610:intron 30.0%
!!! CAATTACTTTTTACACTGAC+AGG - chr1_1:1763776-1763795 Msa0000610:intron 30.0%
CAAAGTTTAATAAATGGAGG+GGG - chr1_1:1764361-1764380 Msa0000610:intron 30.0%
AACATTGCTTGATATCTCTT+TGG - chr1_1:1764521-1764540 Msa0000610:intron 30.0%
! TTTGAAACGGTTCCTATAAA+AGG - chr1_1:1764795-1764814 Msa0000610:intron 30.0%
CAAGGAAAAATATCAAGATG+TGG - chr1_1:1764821-1764840 Msa0000610:intron 30.0%
TAAGTTCAACCTTTGTTCAT+AGG - chr1_1:1764858-1764877 Msa0000610:intron 30.0%
AGCAATCTGTTAATACTCTA+TGG - chr1_1:1764902-1764921 Msa0000610:intron 30.0%
AGATTCTACCCATTCTTTAA+TGG + chr1_1:1765037-1765056 None:intergenic 30.0%
CGATGCAATTGAATTTGATT+CGG + chr1_1:1765079-1765098 None:intergenic 30.0%
CGAATCAAATTCAATTGCAT+CGG - chr1_1:1765077-1765096 Msa0000610:intron 30.0%
TTGTCGTAAGTATGAAAGAT+AGG + chr1_1:1765200-1765219 None:intergenic 30.0%
TCATACTTACGACAATCATA+TGG - chr1_1:1765205-1765224 Msa0000610:intron 30.0%
CATACTTACGACAATCATAT+GGG - chr1_1:1765206-1765225 Msa0000610:intron 30.0%
CAACATGCTGCTATAAATTT+CGG - chr1_1:1765240-1765259 Msa0000610:intron 30.0%
AACATGCTGCTATAAATTTC+GGG - chr1_1:1765241-1765260 Msa0000610:intron 30.0%
GATGATAGGAAAAAAAGTTG+AGG + chr1_1:1765366-1765385 None:intergenic 30.0%
TGACTCATTTGCATAATCAT+TGG - chr1_1:1765475-1765494 Msa0000610:intron 30.0%
TAATCATTGGATCAATGATC+AGG - chr1_1:1765488-1765507 Msa0000610:intron 30.0%
TAAATTCTCTACTAGACTTG+AGG - chr1_1:1765530-1765549 Msa0000610:intron 30.0%
AAAGGAAGCAAAAGTTCATA+AGG + chr1_1:1765627-1765646 None:intergenic 30.0%
CGATCATATAGATATACTGT+TGG + chr1_1:1765682-1765701 None:intergenic 30.0%
!! GATCTGATACACTATTTTAG+TGG - chr1_1:1765760-1765779 Msa0000610:intron 30.0%
ATTGATCAATTCGTTTATGC+TGG - chr1_1:1765848-1765867 Msa0000610:CDS 30.0%
CTTGTGCAAAATATACATGA+AGG + chr1_1:1765879-1765898 None:intergenic 30.0%
! TTGAGAATAATAGCCTTACA+AGG - chr1_1:1765923-1765942 Msa0000610:CDS 30.0%
! TGAGAATAATAGCCTTACAA+GGG - chr1_1:1765924-1765943 Msa0000610:CDS 30.0%
! TTTTCTCTATATCCCTTGTA+AGG + chr1_1:1765939-1765958 None:intergenic 30.0%
AAAAGGAATTGTATCTCCAA+GGG + chr1_1:1766030-1766049 None:intergenic 30.0%
TAAAAGGAATTGTATCTCCA+AGG + chr1_1:1766031-1766050 None:intergenic 30.0%
TATCTAACAAACGAGATATG+TGG + chr1_1:1766177-1766196 None:intergenic 30.0%
TTATTTCACGGTCATCTGAA+CGG - chr1_1:1758572-1758591 Msa0000610:three_prime_UTR 35.0%
AATGAAAGTTAGTGTGGTTG+AGG - chr1_1:1758762-1758781 Msa0000610:three_prime_UTR 35.0%
! CAGTTGGAGTATTTCATCAA+TGG - chr1_1:1758796-1758815 Msa0000610:three_prime_UTR 35.0%
GAGTATTTCATCAATGGTGT+TGG - chr1_1:1758802-1758821 Msa0000610:three_prime_UTR 35.0%
CTTGTGTGATTCAAATGAAG+AGG - chr1_1:1759037-1759056 Msa0000610:CDS 35.0%
! AGATCTAAAAGCGCATAGAT+CGG + chr1_1:1759112-1759131 None:intergenic 35.0%
! TCTATGCGCTTTTAGATCTT+TGG - chr1_1:1759113-1759132 Msa0000610:CDS 35.0%
TACTCTCAACCAAAACAACT+AGG + chr1_1:1759351-1759370 None:intergenic 35.0%
TATTCCGCTGAACTATTTAG+GGG + chr1_1:1759401-1759420 None:intergenic 35.0%
CATATTCCGCTGAACTATTT+AGG + chr1_1:1759403-1759422 None:intergenic 35.0%
! GCCACTCATTTAATTTCACT+AGG - chr1_1:1759424-1759443 Msa0000610:CDS 35.0%
GCCTAGTGAAATTAAATGAG+TGG + chr1_1:1759428-1759447 None:intergenic 35.0%
GCCTGCAAAAACGAAAATAA+TGG - chr1_1:1760070-1760089 Msa0000610:intron 35.0%
TTTCTTTAATAAGCCGACTG+TGG - chr1_1:1760846-1760865 Msa0000610:intron 35.0%
ATCCTTACTCGTTTCTTAAG+AGG - chr1_1:1761003-1761022 Msa0000610:CDS 35.0%
TAACCACCCTTGTTAATTCA+TGG + chr1_1:1761033-1761052 None:intergenic 35.0%
TACATTTACCGTTGATCTTC+AGG - chr1_1:1761051-1761070 Msa0000610:intron 35.0%
GGTGTCTGATCAATACAATT+TGG + chr1_1:1761091-1761110 None:intergenic 35.0%
TTGATCCACAACTATTCAAG+GGG + chr1_1:1761249-1761268 None:intergenic 35.0%
ATTCTCGAAAAGAGCAACAT+AGG - chr1_1:1761405-1761424 Msa0000610:intron 35.0%
! ATAGTGGTCTTACTTCTTAG+TGG - chr1_1:1761517-1761536 Msa0000610:intron 35.0%
! TAGTGGTCTTACTTCTTAGT+GGG - chr1_1:1761518-1761537 Msa0000610:intron 35.0%
CACCAACAAATTAATCCAAG+TGG - chr1_1:1761567-1761586 Msa0000610:intron 35.0%
!! ACCCACTTGGATTAATTTGT+TGG + chr1_1:1761572-1761591 None:intergenic 35.0%
AATTAATCCAAGTGGGTAAC+TGG - chr1_1:1761575-1761594 Msa0000610:intron 35.0%
GTAGATTCTACTCTCTCAAT+GGG + chr1_1:1761636-1761655 None:intergenic 35.0%
AGTAGATTCTACTCTCTCAA+TGG + chr1_1:1761637-1761656 None:intergenic 35.0%
ATGTTATAGGTAGTTAGCAG+CGG + chr1_1:1761695-1761714 None:intergenic 35.0%
! TATGGAATGTTTGATGGCTT+CGG + chr1_1:1761865-1761884 None:intergenic 35.0%
CATTACCAATCTTCGTTCAA+AGG - chr1_1:1761948-1761967 Msa0000610:CDS 35.0%
GTGTTAGCTGGAAAGAAAAT+GGG + chr1_1:1762018-1762037 None:intergenic 35.0%
TGTGTTAGCTGGAAAGAAAA+TGG + chr1_1:1762019-1762038 None:intergenic 35.0%
! TTTTCTTTCCAGCTAACACA+TGG - chr1_1:1762019-1762038 Msa0000610:intron 35.0%
! CTTGTTTGTTAGTATACACG+TGG + chr1_1:1762194-1762213 None:intergenic 35.0%
!!! TAGCATGTTGTTTTGTTGCA+TGG - chr1_1:1762270-1762289 Msa0000610:CDS 35.0%
TATCAAAAATCTTCGACGTG+AGG - chr1_1:1762331-1762350 Msa0000610:intron 35.0%
! GTGATTTTCTTTCCTGTTCT+TGG + chr1_1:1762388-1762407 None:intergenic 35.0%
CTAACAAGTTCCTCTTTATC+AGG + chr1_1:1762455-1762474 None:intergenic 35.0%
TCTTCAAAAGTTTCATCTCG+CGG + chr1_1:1762713-1762732 None:intergenic 35.0%
CAAGTTTGGGTATAAGATTG+TGG + chr1_1:1762781-1762800 None:intergenic 35.0%
! CATTCCTTTCAAGTGTTTCT+CGG - chr1_1:1762823-1762842 Msa0000610:intron 35.0%
TTGGGAGATGAAGAGAATAA+AGG - chr1_1:1762878-1762897 Msa0000610:intron 35.0%
TGGGAGATGAAGAGAATAAA+GGG - chr1_1:1762879-1762898 Msa0000610:intron 35.0%
! GCATACCTTTTACAATAGCT+GGG + chr1_1:1762982-1763001 None:intergenic 35.0%
! AGCATACCTTTTACAATAGC+TGG + chr1_1:1762983-1763002 None:intergenic 35.0%
! GCATGCCTTTTTAACATGTT+TGG + chr1_1:1763276-1763295 None:intergenic 35.0%
! TAGTCCTTTTGCATTGTTAC+AGG - chr1_1:1763405-1763424 Msa0000610:intron 35.0%
ATCTCCTGTAACAATGCAAA+AGG + chr1_1:1763412-1763431 None:intergenic 35.0%
! TTACAGGAGATAGATTTGCT+TGG - chr1_1:1763421-1763440 Msa0000610:intron 35.0%
TACTCATGTAACTGCCTAAT+TGG + chr1_1:1763538-1763557 None:intergenic 35.0%
CATGAGTATCCAACTATTGA+AGG - chr1_1:1763550-1763569 Msa0000610:intron 35.0%
CCAAAAACACCTTCAATAGT+TGG + chr1_1:1763562-1763581 None:intergenic 35.0%
!!! CCAACTATTGAAGGTGTTTT+TGG - chr1_1:1763559-1763578 Msa0000610:intron 35.0%
!! TTGTTATTGCTGATTCTGGA+GGG + chr1_1:1763635-1763654 None:intergenic 35.0%
!! TTTGTTATTGCTGATTCTGG+AGG + chr1_1:1763636-1763655 None:intergenic 35.0%
TCCAGAATCAGCAATAACAA+AGG - chr1_1:1763635-1763654 Msa0000610:intron 35.0%
!! TCCTTTGTTATTGCTGATTC+TGG + chr1_1:1763639-1763658 None:intergenic 35.0%
AGCAATAACAAAGGAACTAC+TGG - chr1_1:1763644-1763663 Msa0000610:intron 35.0%
GAGTTCATCTTCTTGATGAA+TGG + chr1_1:1763852-1763871 None:intergenic 35.0%
TTGTAATGAAGAGAATCGTC+CGG + chr1_1:1763902-1763921 None:intergenic 35.0%
GACGATTCTCTTCATTACAA+AGG - chr1_1:1763902-1763921 Msa0000610:intron 35.0%
ATTCTCTTCATTACAAAGGC+CGG - chr1_1:1763906-1763925 Msa0000610:intron 35.0%
AGTGCCAATATGTAATATGC+AGG - chr1_1:1764209-1764228 Msa0000610:intron 35.0%
GGATGTAGCAACTTGTAAAT+AGG + chr1_1:1764301-1764320 None:intergenic 35.0%
!! ATTGAAGCATCTTTTAGTCC+TGG - chr1_1:1764388-1764407 Msa0000610:intron 35.0%
ATTTGATATGGAGTCTCTTC+CGG - chr1_1:1764459-1764478 Msa0000610:intron 35.0%
ACTACCTCCATTCATGAATA+TGG - chr1_1:1764560-1764579 Msa0000610:intron 35.0%
GATACCATATTCATGAATGG+AGG + chr1_1:1764567-1764586 None:intergenic 35.0%
! GTTTTCCAAGTTTACACTTC+AGG - chr1_1:1764661-1764680 Msa0000610:intron 35.0%
TATCTCCTGAAGTGTAAACT+TGG + chr1_1:1764669-1764688 None:intergenic 35.0%
! TTTTCCTTGCCACCTTTTAT+AGG + chr1_1:1764810-1764829 None:intergenic 35.0%
! ATCACAAGTTTTACACCACA+GGG + chr1_1:1764970-1764989 None:intergenic 35.0%
! AATCACAAGTTTTACACCAC+AGG + chr1_1:1764971-1764990 None:intergenic 35.0%
TGGAGTGAAATCAAGTGTAA+GGG - chr1_1:1765120-1765139 Msa0000610:intron 35.0%
CTGACAAAAGAAATGAACCT+TGG - chr1_1:1765148-1765167 Msa0000610:intron 35.0%
ACAAAAGAAATGAACCTTGG+TGG - chr1_1:1765151-1765170 Msa0000610:intron 35.0%
! TCCTCTTTGGTATCTAGTTT+AGG + chr1_1:1765177-1765196 None:intergenic 35.0%
TATGAAAGATAGGTCCTCTT+TGG + chr1_1:1765190-1765209 None:intergenic 35.0%
! ATAAGTTTTCTCATGAGGGT+AGG + chr1_1:1765300-1765319 None:intergenic 35.0%
! AGGGATAAGTTTTCTCATGA+GGG + chr1_1:1765304-1765323 None:intergenic 35.0%
ACTTCAAGCTACCAAAGTAA+TGG - chr1_1:1765398-1765417 Msa0000610:intron 35.0%
!! CCAGTTCTACTTTTCAAACT+TGG + chr1_1:1765591-1765610 None:intergenic 35.0%
CCAAGTTTGAAAAGTAGAAC+TGG - chr1_1:1765588-1765607 Msa0000610:intron 35.0%
CATGACTTATATGCGACATA+TGG + chr1_1:1765987-1766006 None:intergenic 35.0%
AAAGGAATTGTATCTCCAAG+GGG + chr1_1:1766029-1766048 None:intergenic 35.0%
ACCGGAGGAGAATTATTTCA+CGG - chr1_1:1758560-1758579 Msa0000610:three_prime_UTR 40.0%
ACCGTGAAATAATTCTCCTC+CGG + chr1_1:1758564-1758583 None:intergenic 40.0%
AAGCAACGGTGAAATGATAG+AGG - chr1_1:1758711-1758730 Msa0000610:three_prime_UTR 40.0%
AATGATAGAGGTGAAAGCAG+TGG - chr1_1:1758723-1758742 Msa0000610:three_prime_UTR 40.0%
!! TTCATCAATGGTGTTGGTCA+AGG - chr1_1:1758808-1758827 Msa0000610:three_prime_UTR 40.0%
!! TCATCAATGGTGTTGGTCAA+GGG - chr1_1:1758809-1758828 Msa0000610:three_prime_UTR 40.0%
! GAGCAGTAACCTAGTTGTTT+TGG - chr1_1:1759339-1759358 Msa0000610:CDS 40.0%
!!! TTGTTTTGGTTGAGAGTAGC+TGG - chr1_1:1759353-1759372 Msa0000610:CDS 40.0%
TGAACTATTTAGGGGACTCA+CGG + chr1_1:1759393-1759412 None:intergenic 40.0%
ACTCTTCCTCTCTTTCTTAC+TGG + chr1_1:1760372-1760391 None:intergenic 40.0%
! AATGCCATTTCCGTCAAAGA+AGG - chr1_1:1760730-1760749 Msa0000610:CDS 40.0%
! ATGCCATTTCCGTCAAAGAA+GGG - chr1_1:1760731-1760750 Msa0000610:CDS 40.0%
TTTACTCCAAGCCATCAAGT+GGG - chr1_1:1760765-1760784 Msa0000610:CDS 40.0%
CACATCGTTGAAACCCAATT+TGG + chr1_1:1760794-1760813 None:intergenic 40.0%
TGAGTTAGATGCTAAAGTCG+TGG - chr1_1:1760819-1760838 Msa0000610:intron 40.0%
TGAATTATGTCCAGACTCGT+TGG - chr1_1:1760914-1760933 Msa0000610:intron 40.0%
TGCCTCTTAAGAAACGAGTA+AGG + chr1_1:1761008-1761027 None:intergenic 40.0%
AGGCACACCATGAATTAACA+AGG - chr1_1:1761023-1761042 Msa0000610:CDS 40.0%
GGCACACCATGAATTAACAA+GGG - chr1_1:1761024-1761043 Msa0000610:CDS 40.0%
ACACCATGAATTAACAAGGG+TGG - chr1_1:1761027-1761046 Msa0000610:intron 40.0%
!! GTTGCTCTTTTCGAGAATTG+TGG + chr1_1:1761403-1761422 None:intergenic 40.0%
! AGTGGTCTTACTTCTTAGTG+GGG - chr1_1:1761519-1761538 Msa0000610:intron 40.0%
! AAAAGCGTGGAATCTTACGT+AGG - chr1_1:1761829-1761848 Msa0000610:CDS 40.0%
! GCAGAGTATTCCACAACATA+TGG + chr1_1:1761883-1761902 None:intergenic 40.0%
!! TTGGTAATGAGAATAGCAGC+CGG + chr1_1:1761937-1761956 None:intergenic 40.0%
GAACTCCTTTGAACGAAGAT+TGG + chr1_1:1761956-1761975 None:intergenic 40.0%
GGAGGATGATTTCCGATAAA+TGG + chr1_1:1761978-1761997 None:intergenic 40.0%
TTATCGGAAATCATCCTCCA+CGG - chr1_1:1761979-1761998 Msa0000610:intron 40.0%
GAATGAATCCATGTGTTAGC+TGG + chr1_1:1762030-1762049 None:intergenic 40.0%
! CGAAGATTTTTGATACCAGG+TGG + chr1_1:1762326-1762345 None:intergenic 40.0%
! CGTCGAAGATTTTTGATACC+AGG + chr1_1:1762329-1762348 None:intergenic 40.0%
!! TGAGGATTTGCTAAGCACAA+GGG - chr1_1:1762349-1762368 Msa0000610:intron 40.0%
TATGCTCCCTACAATGAGTT+AGG - chr1_1:1762425-1762444 Msa0000610:intron 40.0%
!! GAACTTGTTAGACCAGTCAT+TGG - chr1_1:1762464-1762483 Msa0000610:intron 40.0%
TCAATTCTAGTCTCACATCG+TGG + chr1_1:1762668-1762687 None:intergenic 40.0%
! AAACAAGATGCATTTGCTGC+TGG - chr1_1:1762737-1762756 Msa0000610:CDS 40.0%
AATGTCTGAATTCGCCATAG+TGG + chr1_1:1762807-1762826 None:intergenic 40.0%
ATCTCCGAGAAACACTTGAA+AGG + chr1_1:1762830-1762849 None:intergenic 40.0%
ATGAAACAGGTCTTCAGTTC+TGG - chr1_1:1762932-1762951 Msa0000610:intron 40.0%
GACATCCCAGCTATTGTAAA+AGG - chr1_1:1762974-1762993 Msa0000610:intron 40.0%
! GAGATAGATTTGCTTGGTTG+CGG - chr1_1:1763427-1763446 Msa0000610:intron 40.0%
! AGATAGATTTGCTTGGTTGC+GGG - chr1_1:1763428-1763447 Msa0000610:intron 40.0%
!!! AAGGTGTTTTTGGTCTTTGC+AGG - chr1_1:1763569-1763588 Msa0000610:intron 40.0%
!! TAGTTGGATCTAGTTTGCTG+CGG + chr1_1:1763605-1763624 None:intergenic 40.0%
! AGAACTTGGTGGAATAAGCT+TGG - chr1_1:1763671-1763690 Msa0000610:intron 40.0%
TGGTGGAATAAGCTTGGAAA+AGG - chr1_1:1763677-1763696 Msa0000610:intron 40.0%
! CTTTTTACACTGACAGGCTA+TGG - chr1_1:1763782-1763801 Msa0000610:intron 40.0%
! TGAATGGCAAAAGCATGTCA+TGG + chr1_1:1763836-1763855 None:intergenic 40.0%
TGTAATGAAGAGAATCGTCC+GGG + chr1_1:1763901-1763920 None:intergenic 40.0%
AGAGAAAGCTCGATAGCTAT+AGG + chr1_1:1763942-1763961 None:intergenic 40.0%
CATGTTAGCTCAAATGATGC+TGG - chr1_1:1764053-1764072 Msa0000610:intron 40.0%
TAGTCCTGGAAAATATGCCT+TGG - chr1_1:1764402-1764421 Msa0000610:intron 40.0%
GAGCATGTGGAGATTTGATA+TGG - chr1_1:1764447-1764466 Msa0000610:intron 40.0%
! TAACACAATTAGGGGCATGT+TGG - chr1_1:1764745-1764764 Msa0000610:intron 40.0%
GAAACGGTTCCTATAAAAGG+TGG - chr1_1:1764798-1764817 Msa0000610:intron 40.0%
TCTATGGAATGTGCTTTCCA+GGG - chr1_1:1764918-1764937 Msa0000610:intron 40.0%
TCTGGTCTGCCATTAAAGAA+TGG - chr1_1:1765025-1765044 Msa0000610:intron 40.0%
CTGGTCTGCCATTAAAGAAT+GGG - chr1_1:1765026-1765045 Msa0000610:intron 40.0%
GTGGAGTGAAATCAAGTGTA+AGG - chr1_1:1765119-1765138 Msa0000610:intron 40.0%
GCCTAAACTAGATACCAAAG+AGG - chr1_1:1765173-1765192 Msa0000610:intron 40.0%
! ACAATCATATGGGTTGCTTC+AGG - chr1_1:1765216-1765235 Msa0000610:intron 40.0%
! AATTTCGGGCAATACCCTTT+TGG - chr1_1:1765255-1765274 Msa0000610:intron 40.0%
TAGGCACATATCCTCCAAAA+GGG + chr1_1:1765272-1765291 None:intergenic 40.0%
TTAGGCACATATCCTCCAAA+AGG + chr1_1:1765273-1765292 None:intergenic 40.0%
! GAGGGATAAGTTTTCTCATG+AGG + chr1_1:1765305-1765324 None:intergenic 40.0%
GTTGAGTAGGCAATGATGAT+AGG + chr1_1:1765380-1765399 None:intergenic 40.0%
! TTGGTAGCTTGAAGTTGAGT+AGG + chr1_1:1765393-1765412 None:intergenic 40.0%
TACCAAAGTAATGGCTGTTC+AGG - chr1_1:1765407-1765426 Msa0000610:intron 40.0%
TACTAGACTTGAGGAGATAG+AGG - chr1_1:1765539-1765558 Msa0000610:intron 40.0%
TTGAAAAGTAGAACTGGTGC+AGG - chr1_1:1765594-1765613 Msa0000610:intron 40.0%
GGAAGCAAAAGTTCATAAGG+AGG + chr1_1:1765624-1765643 None:intergenic 40.0%
! GAACTTTTGCTTCCTTTGTC+AGG - chr1_1:1765630-1765649 Msa0000610:intron 40.0%
TCGATCAATTTCGATTGCCT+TGG - chr1_1:1765699-1765718 Msa0000610:intron 40.0%
TTGCACAAGATCTATGGTCA+AGG - chr1_1:1765890-1765909 Msa0000610:CDS 40.0%
ACAAGATCTATGGTCAAGGT+AGG - chr1_1:1765894-1765913 Msa0000610:CDS 40.0%
CAAGATCTATGGTCAAGGTA+GGG - chr1_1:1765895-1765914 Msa0000610:CDS 40.0%
AAGATCTATGGTCAAGGTAG+GGG - chr1_1:1765896-1765915 Msa0000610:CDS 40.0%
CAAGTTCAAGCAGTGATCAG+CGG - chr1_1:1758604-1758623 Msa0000610:three_prime_UTR 45.0%
TCGTTACAAAGTAGCTCGAG+TGG - chr1_1:1758682-1758701 Msa0000610:three_prime_UTR 45.0%
TTACAAAGTAGCTCGAGTGG+TGG - chr1_1:1758685-1758704 Msa0000610:three_prime_UTR 45.0%
TACAAAGTAGCTCGAGTGGT+GGG - chr1_1:1758686-1758705 Msa0000610:three_prime_UTR 45.0%
TAGTGTGGTTGAGGAGTTTG+AGG - chr1_1:1758771-1758790 Msa0000610:three_prime_UTR 45.0%
TGAGGAGTTTGAGGATCAGT+TGG - chr1_1:1758780-1758799 Msa0000610:three_prime_UTR 45.0%
GTTAGTGAACTCATAGACCC+TGG - chr1_1:1758847-1758866 Msa0000610:three_prime_UTR 45.0%
! GTTGAGAGTAGCTGGTGTTT+TGG - chr1_1:1759361-1759380 Msa0000610:CDS 45.0%
GAGTCCCCTAAATAGTTCAG+CGG - chr1_1:1759394-1759413 Msa0000610:CDS 45.0%
! TGCCATTTCCGTCAAAGAAG+GGG - chr1_1:1760732-1760751 Msa0000610:CDS 45.0%
ATCCCCTTCTTTGACGGAAA+TGG + chr1_1:1760737-1760756 None:intergenic 45.0%
GTATGCATCCCCTTCTTTGA+CGG + chr1_1:1760743-1760762 None:intergenic 45.0%
GTCAAAGAAGGGGATGCATA+CGG - chr1_1:1760742-1760761 Msa0000610:CDS 45.0%
GTTTACTCCAAGCCATCAAG+TGG - chr1_1:1760764-1760783 Msa0000610:CDS 45.0%
ATCAAGTGGGTGGCCAAATT+GGG - chr1_1:1760778-1760797 Msa0000610:CDS 45.0%
!!! ACTCGTTGGCAGGGTTTTTT+AGG - chr1_1:1760928-1760947 Msa0000610:intron 45.0%
!!! GGCAGGGTTTTTTAGGAGTT+AGG - chr1_1:1760935-1760954 Msa0000610:intron 45.0%
GGTGCAGTAACTACGTCATA+TGG + chr1_1:1761164-1761183 None:intergenic 45.0%
ATCCAAGTGGGTAACTGGTA+AGG - chr1_1:1761580-1761599 Msa0000610:intron 45.0%
TCCAAGTGGGTAACTGGTAA+GGG - chr1_1:1761581-1761600 Msa0000610:intron 45.0%
TGGAATCTTACGTAGGAGGT+TGG - chr1_1:1761836-1761855 Msa0000610:CDS 45.0%
TTCACAGTGCCAAGAGACTT+TGG - chr1_1:1761907-1761926 Msa0000610:CDS 45.0%
! TGGTAATGAGAATAGCAGCC+GGG + chr1_1:1761936-1761955 None:intergenic 45.0%
! CACTTCTTCAAAGGTGTGTG+AGG + chr1_1:1762226-1762245 None:intergenic 45.0%
TTACCATCACAAACACCACC+TGG - chr1_1:1762308-1762327 Msa0000610:CDS 45.0%
ATACCAGGTGGTGTTTGTGA+TGG + chr1_1:1762314-1762333 None:intergenic 45.0%
!! GTGAGGATTTGCTAAGCACA+AGG - chr1_1:1762348-1762367 Msa0000610:intron 45.0%
!! GAGGATTTGCTAAGCACAAG+GGG - chr1_1:1762350-1762369 Msa0000610:intron 45.0%
GGGTTGCCTAACTCATTGTA+GGG + chr1_1:1762434-1762453 None:intergenic 45.0%
AGGGTTGCCTAACTCATTGT+AGG + chr1_1:1762435-1762454 None:intergenic 45.0%
GTTAGGCAACCCTGATAAAG+AGG - chr1_1:1762442-1762461 Msa0000610:intron 45.0%
CTCTCATGATCTCCAATGAC+TGG + chr1_1:1762479-1762498 None:intergenic 45.0%
GGTGGGAAAAGTGATGAAAC+AGG - chr1_1:1762919-1762938 Msa0000610:intron 45.0%
GTATGCTACCTCTACTGCTT+AGG - chr1_1:1762996-1763015 Msa0000610:intron 45.0%
TGTGTTTGCCTAAGCAGTAG+AGG + chr1_1:1763007-1763026 None:intergenic 45.0%
! TACTGGATTGACTCCAGCTA+AGG + chr1_1:1763475-1763494 None:intergenic 45.0%
GAACTACTGGAGCAAGAACT+TGG - chr1_1:1763657-1763676 Msa0000610:intron 45.0%
TTTACACTGACAGGCTATGG+AGG - chr1_1:1763785-1763804 Msa0000610:intron 45.0%
GTTAAGGACTCATGCATGCA+TGG - chr1_1:1764231-1764250 Msa0000610:intron 45.0%
TCCTCATACGCGCTATACAA+TGG - chr1_1:1764318-1764337 Msa0000610:intron 45.0%
TCCATTGTATAGCGCGTATG+AGG + chr1_1:1764322-1764341 None:intergenic 45.0%
! AGCTCCAAGGCATATTTTCC+AGG + chr1_1:1764409-1764428 None:intergenic 45.0%
CTCTTCCGGCAGATCTTATT+CGG - chr1_1:1764473-1764492 Msa0000610:intron 45.0%
TACCTCCGAATAAGATCTGC+CGG + chr1_1:1764481-1764500 None:intergenic 45.0%
GGTTCCTATAAAAGGTGGCA+AGG - chr1_1:1764803-1764822 Msa0000610:intron 45.0%
CTCTATGGAATGTGCTTTCC+AGG - chr1_1:1764917-1764936 Msa0000610:intron 45.0%
CTATGGAATGTGCTTTCCAG+GGG - chr1_1:1764919-1764938 Msa0000610:intron 45.0%
!! TTACACCACAGGGCATTGAA+GGG + chr1_1:1764960-1764979 None:intergenic 45.0%
!! TTTACACCACAGGGCATTGA+AGG + chr1_1:1764961-1764980 None:intergenic 45.0%
GAAGTCCATCTGCAGCATAA+GGG + chr1_1:1765002-1765021 None:intergenic 45.0%
AGAAGTCCATCTGCAGCATA+AGG + chr1_1:1765003-1765022 None:intergenic 45.0%
! CTGCAGATGGACTTCTAATC+TGG - chr1_1:1765007-1765026 Msa0000610:intron 45.0%
TGATTTCACTCCACCACTCT+TGG + chr1_1:1765113-1765132 None:intergenic 45.0%
! GTATCTAGTTTAGGCCACCA+AGG + chr1_1:1765168-1765187 None:intergenic 45.0%
! GTTTTCTCATGAGGGTAGGA+CGG + chr1_1:1765296-1765315 None:intergenic 45.0%
GTCCTGAACAGCCATTACTT+TGG + chr1_1:1765412-1765431 None:intergenic 45.0%
!! TTCCCCTGACGAAGAGTATT+TGG - chr1_1:1765446-1765465 Msa0000610:intron 45.0%
!! TCCCCTGACGAAGAGTATTT+GGG - chr1_1:1765447-1765466 Msa0000610:intron 45.0%
ACCCAAATACTCTTCGTCAG+GGG + chr1_1:1765451-1765470 None:intergenic 45.0%
GACCCAAATACTCTTCGTCA+GGG + chr1_1:1765452-1765471 None:intergenic 45.0%
TGACCCAAATACTCTTCGTC+AGG + chr1_1:1765453-1765472 None:intergenic 45.0%
GAATTGTATCTCCAAGGGGT+TGG + chr1_1:1766025-1766044 None:intergenic 45.0%
!!! AATTAAATTTTAAACTTTTT+TGG - chr1_1:1760395-1760414 Msa0000610:intron 5.0%
!!! ATTAAATTTTAAACTTTTTT+GGG - chr1_1:1760396-1760415 Msa0000610:intron 5.0%
!!! TTAAAAGTTAATATTTTTTA+TGG + chr1_1:1761347-1761366 None:intergenic 5.0%
CTCTTATCGGAGAACACCGA+CGG + chr1_1:1758538-1758557 None:intergenic 50.0%
! TGTTCTCCGATAAGAGGCAC+CGG - chr1_1:1758542-1758561 Msa0000610:three_prime_UTR 50.0%
TTTCACGGTCATCTGAACGG+CGG - chr1_1:1758575-1758594 Msa0000610:three_prime_UTR 50.0%
CAAGACTACAACGTCGTCTC+CGG - chr1_1:1758636-1758655 Msa0000610:three_prime_UTR 50.0%
! TTGCTCACTTTGCTGTCCAC+CGG + chr1_1:1758658-1758677 None:intergenic 50.0%
GTGGACAGCAAAGTGAGCAA+TGG - chr1_1:1758658-1758677 Msa0000610:three_prime_UTR 50.0%
CAATTTGGCCACCCACTTGA+TGG + chr1_1:1760779-1760798 None:intergenic 50.0%
CATCAAGTGGGTGGCCAAAT+TGG - chr1_1:1760777-1760796 Msa0000610:CDS 50.0%
TTATGTCCAGACTCGTTGGC+AGG - chr1_1:1760918-1760937 Msa0000610:intron 50.0%
TATGTCCAGACTCGTTGGCA+GGG - chr1_1:1760919-1760938 Msa0000610:intron 50.0%
AAAAACCCTGCCAACGAGTC+TGG + chr1_1:1760927-1760946 None:intergenic 50.0%
GTCTGCCCCTTGAATAGTTG+TGG - chr1_1:1761241-1761260 Msa0000610:intron 50.0%
TCCCTTACCAGTTACCCACT+TGG + chr1_1:1761585-1761604 None:intergenic 50.0%
GCAGCGGTTAATATCTCCGT+CGG + chr1_1:1761679-1761698 None:intergenic 50.0%
AGCGTGGAATCTTACGTAGG+AGG - chr1_1:1761832-1761851 Msa0000610:CDS 50.0%
GGTAATGAGAATAGCAGCCG+GGG + chr1_1:1761935-1761954 None:intergenic 50.0%
TTGCTAAGCACAAGGGGAAG+CGG - chr1_1:1762356-1762375 Msa0000610:intron 50.0%
GTTCTACAGCGACGAGGATA+AGG + chr1_1:1762503-1762522 None:intergenic 50.0%
TATCCTCGTCGCTGTAGAAC+CGG - chr1_1:1762503-1762522 Msa0000610:intron 50.0%
CATCTCGCGGCACATAAACA+GGG + chr1_1:1762700-1762719 None:intergenic 50.0%
TCATCTCGCGGCACATAAAC+AGG + chr1_1:1762701-1762720 None:intergenic 50.0%
ACCCAAACTTGCAGCCACTA+TGG - chr1_1:1762790-1762809 Msa0000610:CDS 50.0%
GCCATAGTGGCTGCAAGTTT+GGG + chr1_1:1762794-1762813 None:intergenic 50.0%
!! AGGTCTTCAGTTCTGGAGAG+CGG - chr1_1:1762939-1762958 Msa0000610:intron 50.0%
TGCGGGACAACGAATTTGCA+AGG - chr1_1:1763445-1763464 Msa0000610:intron 50.0%
TTTGCAAGGCAAGCCTTAGC+TGG - chr1_1:1763459-1763478 Msa0000610:intron 50.0%
!! GGATCTAGTTTGCTGCGGAT+TGG + chr1_1:1763600-1763619 None:intergenic 50.0%
TCTGGAGGGCCATAGATAGT+TGG + chr1_1:1763621-1763640 None:intergenic 50.0%
CTACTGGAGCAAGAACTTGG+TGG - chr1_1:1763660-1763679 Msa0000610:intron 50.0%
AGATGAACTCTTTGCCCGAG+AGG - chr1_1:1763862-1763881 Msa0000610:intron 50.0%
GAGGCATAAGCTTTCCTCTC+GGG + chr1_1:1763879-1763898 None:intergenic 50.0%
! GGAGGCATAAGCTTTCCTCT+CGG + chr1_1:1763880-1763899 None:intergenic 50.0%
AGAGGAAAGCTTATGCCTCC+CGG - chr1_1:1763880-1763899 Msa0000610:intron 50.0%
AATGAAGAGAATCGTCCGGG+AGG + chr1_1:1763898-1763917 None:intergenic 50.0%
AGCTATAGGACGCAGAACAC+CGG + chr1_1:1763928-1763947 None:intergenic 50.0%
ATGCCACAGCACACTGGATT+TGG - chr1_1:1764015-1764034 Msa0000610:intron 50.0%
CTTCCAAATCCAGTGTGCTG+TGG + chr1_1:1764021-1764040 None:intergenic 50.0%
AGCTGCTGAACTAAGCTCCA+AGG + chr1_1:1764422-1764441 None:intergenic 50.0%
! CAGCAGCTTACAAGAGCATG+TGG - chr1_1:1764434-1764453 Msa0000610:intron 50.0%
TTCCGGCAGATCTTATTCGG+AGG - chr1_1:1764476-1764495 Msa0000610:intron 50.0%
GACTACCCTTATGCTGCAGA+TGG - chr1_1:1764994-1765013 Msa0000610:intron 50.0%
ATGTTGAGCTCCAAGAGTGG+TGG - chr1_1:1765100-1765119 Msa0000610:intron 50.0%
! TTCGGGCAATACCCTTTTGG+AGG - chr1_1:1765258-1765277 Msa0000610:intron 50.0%
TTGCTTCCTTTGTCAGGACC+CGG - chr1_1:1765636-1765655 Msa0000610:intron 50.0%
TTTACTCCTCCGATCGCCGT+CGG - chr1_1:1758519-1758538 Msa0000610:three_prime_UTR 55.0%
! CGTCGGTGTTCTCCGATAAG+AGG - chr1_1:1758536-1758555 Msa0000610:three_prime_UTR 55.0%
TCTCCTCCGGTGCCTCTTAT+CGG + chr1_1:1758551-1758570 None:intergenic 55.0%
GTTCAAGCAGTGATCAGCGG+CGG - chr1_1:1758607-1758626 Msa0000610:three_prime_UTR 55.0%
! TCGAGTGGTGGGAGAAGCAA+CGG - chr1_1:1758697-1758716 Msa0000610:three_prime_UTR 55.0%
ACTCCAAGCCATCAAGTGGG+TGG - chr1_1:1760768-1760787 Msa0000610:CDS 55.0%
GCCAAGAGACTTTGGATCCC+CGG - chr1_1:1761915-1761934 Msa0000610:CDS 55.0%
ATCATCCTCCACGGCTTCAC+TGG - chr1_1:1761988-1762007 Msa0000610:intron 55.0%
TGAACTCTACCGGAGCGAGT+AGG + chr1_1:1762536-1762555 None:intergenic 55.0%
CGCCATAGTGGCTGCAAGTT+TGG + chr1_1:1762795-1762814 None:intergenic 55.0%
TGCGGCGAAGTAAGTGTCTG+AGG + chr1_1:1763966-1763985 None:intergenic 55.0%
TCCAGTGTGCTGTGGCATCA+TGG + chr1_1:1764013-1764032 None:intergenic 55.0%
GAATGTGCTTTCCAGGGGCA+TGG - chr1_1:1764924-1764943 Msa0000610:intron 55.0%
GAAGACCCTTCAATGCCCTG+TGG - chr1_1:1764952-1764971 Msa0000610:intron 55.0%
CGGATGTTGAGCTCCAAGAG+TGG - chr1_1:1765097-1765116 Msa0000610:intron 55.0%
CTCATGAGGGTAGGACGGTT+AGG + chr1_1:1765291-1765310 None:intergenic 55.0%
!! GGGGTTGGCTTAGTGAAGCA+TGG + chr1_1:1766010-1766029 None:intergenic 55.0%
GCTTCACTAAGCCAACCCCT+TGG - chr1_1:1766011-1766030 Msa0000610:CDS 55.0%
GACGGCGATCGGAGGAGTAA+AGG + chr1_1:1758520-1758539 None:intergenic 60.0%
!! TCTCCGATAAGAGGCACCGG+AGG - chr1_1:1758545-1758564 Msa0000610:three_prime_UTR 60.0%
GACTACAACGTCGTCTCCGG+TGG - chr1_1:1758639-1758658 Msa0000610:three_prime_UTR 60.0%
! TGGCCACCCACTTGATGGCT+TGG + chr1_1:1760774-1760793 None:intergenic 60.0%
TGTGCCTCACATGCTGCCGA+CGG - chr1_1:1761660-1761679 Msa0000610:CDS 60.0%
ATCTCCGTCGGCAGCATGTG+AGG + chr1_1:1761667-1761686 None:intergenic 60.0%
GCCGGGGATCCAAAGTCTCT+TGG + chr1_1:1761919-1761938 None:intergenic 60.0%
ATCCTCCACGGCTTCACTGG+AGG - chr1_1:1761991-1762010 Msa0000610:intron 60.0%
!! AAGCGGTGCTGCCCAAGAAC+AGG - chr1_1:1762373-1762392 Msa0000610:intron 60.0%
CTTCCGGTTCTACAGCGACG+AGG + chr1_1:1762509-1762528 None:intergenic 60.0%
GGAGCGAGTAGGAGGTCTTC+CGG + chr1_1:1762525-1762544 None:intergenic 60.0%
GGAAGACCTCCTACTCGCTC+CGG - chr1_1:1762524-1762543 Msa0000610:intron 60.0%
ACTCTACCGGAGCGAGTAGG+AGG + chr1_1:1762533-1762552 None:intergenic 60.0%
CGCGGCACATAAACAGGGTG+TGG + chr1_1:1762695-1762714 None:intergenic 60.0%
GCCATGATGCCACAGCACAC+TGG - chr1_1:1764009-1764028 Msa0000610:intron 60.0%
GTCTTCTACTGCCATGCCCC+TGG + chr1_1:1764938-1764957 None:intergenic 60.0%
GTTGCTCCGGGTCCTGACAA+AGG + chr1_1:1765645-1765664 None:intergenic 60.0%
TTGTCAGGACCCGGAGCAAC+TGG - chr1_1:1765645-1765664 Msa0000610:intron 60.0%
ACTCCACGACCAGTTGCTCC+GGG + chr1_1:1765657-1765676 None:intergenic 60.0%
GACTCCACGACCAGTTGCTC+CGG + chr1_1:1765658-1765677 None:intergenic 60.0%
AGAACACCGACGGCGATCGG+AGG + chr1_1:1758528-1758547 None:intergenic 65.0%
CGGAGAACACCGACGGCGAT+CGG + chr1_1:1758531-1758550 None:intergenic 65.0%
GTCCTCCAGTGAAGCCGTGG+AGG + chr1_1:1761996-1762015 None:intergenic 65.0%
TGGGTCCTCCAGTGAAGCCG+TGG + chr1_1:1761999-1762018 None:intergenic 65.0%
GGACCCGGAGCAACTGGTCG+TGG - chr1_1:1765651-1765670 Msa0000610:intron 70.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 1758398 1766237 1758398 ID=Msa0000610;Name=Msa0000610
chr1_1 mRNA 1758398 1766237 1758398 ID=Msa0000610-mRNA-1;Parent=Msa0000610;Name=Msa0000610-mRNA-1;_AED=0.11;_eAED=0.11;_QI=98|1|1|1|1|1|9|539|916
chr1_1 exon 1758398 1759696 1758398 ID=Msa0000610-mRNA-1:exon:323;Parent=Msa0000610-mRNA-1
chr1_1 exon 1760138 1760404 1760138 ID=Msa0000610-mRNA-1:exon:322;Parent=Msa0000610-mRNA-1
chr1_1 exon 1760536 1760837 1760536 ID=Msa0000610-mRNA-1:exon:321;Parent=Msa0000610-mRNA-1
chr1_1 exon 1760937 1761044 1760937 ID=Msa0000610-mRNA-1:exon:320;Parent=Msa0000610-mRNA-1
chr1_1 exon 1761123 1761208 1761123 ID=Msa0000610-mRNA-1:exon:319;Parent=Msa0000610-mRNA-1
chr1_1 exon 1761640 1761972 1761640 ID=Msa0000610-mRNA-1:exon:318;Parent=Msa0000610-mRNA-1
chr1_1 exon 1762090 1762333 1762090 ID=Msa0000610-mRNA-1:exon:317;Parent=Msa0000610-mRNA-1
chr1_1 exon 1762543 1762820 1762543 ID=Msa0000610-mRNA-1:exon:316;Parent=Msa0000610-mRNA-1
chr1_1 exon 1765767 1766237 1765767 ID=Msa0000610-mRNA-1:exon:315;Parent=Msa0000610-mRNA-1
chr1_1 five_prime_UTR 1766140 1766237 1766140 ID=Msa0000610-mRNA-1:five_prime_utr;Parent=Msa0000610-mRNA-1
chr1_1 CDS 1765767 1766139 1765767 ID=Msa0000610-mRNA-1:cds;Parent=Msa0000610-mRNA-1
chr1_1 CDS 1762543 1762820 1762543 ID=Msa0000610-mRNA-1:cds;Parent=Msa0000610-mRNA-1
chr1_1 CDS 1762090 1762333 1762090 ID=Msa0000610-mRNA-1:cds;Parent=Msa0000610-mRNA-1
chr1_1 CDS 1761640 1761972 1761640 ID=Msa0000610-mRNA-1:cds;Parent=Msa0000610-mRNA-1
chr1_1 CDS 1761123 1761208 1761123 ID=Msa0000610-mRNA-1:cds;Parent=Msa0000610-mRNA-1
chr1_1 CDS 1760937 1761044 1760937 ID=Msa0000610-mRNA-1:cds;Parent=Msa0000610-mRNA-1
chr1_1 CDS 1760536 1760837 1760536 ID=Msa0000610-mRNA-1:cds;Parent=Msa0000610-mRNA-1
chr1_1 CDS 1760138 1760404 1760138 ID=Msa0000610-mRNA-1:cds;Parent=Msa0000610-mRNA-1
chr1_1 CDS 1758937 1759696 1758937 ID=Msa0000610-mRNA-1:cds;Parent=Msa0000610-mRNA-1
chr1_1 three_prime_UTR 1758398 1758936 1758398 ID=Msa0000610-mRNA-1:three_prime_utr;Parent=Msa0000610-mRNA-1
Gene Sequence

>Msa0000610

ATGTTCGCAGTGAAGTCTAATCCTTTACTCCTCCGATCGCCGTCGGTGTTCTCCGATAAGAGGCACCGGAGGAGAATTATTTCACGGTCATCTGAACGGCGGAGCGTTCAAGTTCAAGCAGTGATCAGCGGCGGAGACAGCAAGACTACAACGTCGTCTCCGGTGGACAGCAAAGTGAGCAATGGCTCGTTACAAAGTAGCTCGAGTGGTGGGAGAAGCAACGGTGAAATGATAGAGGTGAAAGCAGTGGTGATGATAAGAAAGAAAATGAAAGTTAGTGTGGTTGAGGAGTTTGAGGATCAGTTGGAGTATTTCATCAATGGTGTTGGTCAAGGGATACAGATTCAGCTTGTTAGTGAACTCATAGACCCTGCTACTAATAATGGAAAAAGCGTGGAATCTTACGTAGGAGGTTGGCTACCGAAGCCATCAAACATTCCATATGTTGTGGAATACTCTGCTGATTTCACAGTGCCAAGAGACTTTGGATCCCCGGCTGCTATTCTCATTACCAATCTTCGTTCAAAGGAGTTCCATTTATCGGAAATCATCCTCCACGGCTTCACTGGAGGACCCATTTTCTTTCCAGCTAACACATGGATTCATTCGCGTAACGATAACCCTCAAAGTAGAATCATATTCAAAAACCAAGCATATTTACCATCACAAACACCACCTGGTATCAAAAATCTTCGACGTGAGGATTTGCTAAGCACAAGGGGAAGCGGTGCTGCCCAAGAACAGGAAAGAAAATCACATGATAGAATCTATGATTATGCTCCCTACAATGAGTTAGGCAACCCTGATAAAGAGGAACTTGTTAGACCAGTCATTGGAGATCATGAGAGACCTTATCCTCGTCGCTGTAGAACCGGAAGACCTCCTACTCGCTCCGATCCACGATGTGAGACTAGAATTGAAAAGCCACACCCTGTTTATGTGCCGCGAGATGAAACTTTTGAAGAAATCAAACAAGATGCATTTGCTGCTGGAAGATTGAAAGCTGTGTTCCACAATCTTATACCCAAACTTGCAGCCACTATGGCGAATTCAGACATTCCTTTCAAGTGTTTCTCGGAGATTGACAAGCTTTATATTGATGGTGTTAATTTGGGAGATGAAGAGAATAAAGGGATAATAGAAAATCTCTTGGTGGGAAAAGTGATGAAACAGGTCTTCAGTTCTGGAGAGCGGTTGATGAAGTATGACATCCCAGCTATTGTAAAAGGAGATAGATTTGCTTGGTTGCGGGACAACGAATTTGCAAGGCAAGCCTTAGCTGGAGTCAATCCAGTAAATATTGAGCTATTGAAGGAGTTTCCAATCCGCAGCAAACTAGATCCAACTATCTATGGCCCTCCAGAATCAGCAATAACAAAGGAACTACTGGAGCAAGAACTTGGTGGAATAAGCTTGGAAAAGGCTATGGAGGAAAAGAGACTATTTATTATTGATTACCATGACATGCTTTTGCCATTCATCAAGAAGATGAACTCTTTGCCCGAGAGGAAAGCTTATGCCTCCCGGACGATTCTCTTCATTACAAAGGCCGGTGTTCTGCGTCCTATAGCTATCGAGCTTTCTCTTCCTCAGACACTTACTTCGCCGCAAAATAGAAAAGTTTACACACAAGGCCATGATGCCACAGCACACTGGATTTGGAAGTTAGCAAAAGCTCATGTTAGCTCAAATGATGCTGGCATTCATCAACTAGTAAATCATTGGTTAAGGACTCATGCATGCATGGAGCCATATATAATTGCTACTCATAGACAGTTAAGCTCAATGCATCCTATTTACAAGTTGCTACATCCTCATACGCGCTATACAATGGAAATTAATGCACTTGCTAGACAAAGTTTAATAAATGGAGGGGGTATAATTGAAGCATCTTTTAGTCCTGGAAAATATGCCTTGGAGCTTAGTTCAGCAGCTTACAAGAGCATGTGGAGATTTGATATGGAGTCTCTTCCGGCAGATCTTATTCGGAGGGGCATGGCAGTAGAAGACCCTTCAATGCCCTGTGGTGTAAAACTTGTGATTGATGACTACCCTTATGCTGCAGATGGACTTCTAATCTGGTCTGCCATTAAAGAATGGGTAGAATCTTATGTCAAACACTTCTATTCCGAATCAAATTCAATTGCATCGGATGTTGAGCTCCAAGAGTGGTGGAGTGAAATCAAGTGTAAGGGTCACGCTGACAAAAGAAATGAACCTTGGTGGCCTAAACTAGATACCAAAGAGGACCTATCTTTCATACTTACGACAATCATATGGGTTGCTTCAGGTCAACATGCTGCTATAAATTTCGGGCAATACCCTTTTGGAGGATATGTGCCTAACCGTCCTACCCTCATGAGAAAACTTATCCCTCAAGAAAATGATTCTGATTATGAGAAGTTTATTCGAAATCCTCAACTTTTTTTCCTATCATCATTGCCTACTCAACTTCAAGCTACCAAAGTAATGGCTGTTCAGGACACGCTGTCGACTCATTCCCCTGACGAAGAGTATTTGGGTCAAGTGACTCATTTGCATAATCATTGGATCAATGATCAGGAAGTCCTGAAATTGTTTAGTAAATTCTCTACTAGACTTGAGGAGATAGAGGAAATTATAAATGCAAGAAATAAGGATCCAAGTTTGAAAAGTAGAACTGGTGCAGGTGTTCCTCCTTATGAACTTTTGCTTCCTTTGTCAGGACCCGGAGCAACTGGTCGTGGAGTCCCCAACAGTATATCTATATGA
Protein sequence

>Msa0000610

MFAVKSNPLLLRSPSVFSDKRHRRRIISRSSERRSVQVQAVISGGDSKTTTSSPVDSKVSNGSLQSSSSGGRSNGEMIEVKAVVMIRKKMKVSVVEEFEDQLEYFINGVGQGIQIQLVSELIDPATNNGKSVESYVGGWLPKPSNIPYVVEYSADFTVPRDFGSPAAILITNLRSKEFHLSEIILHGFTGGPIFFPANTWIHSRNDNPQSRIIFKNQAYLPSQTPPGIKNLRREDLLSTRGSGAAQEQERKSHDRIYDYAPYNELGNPDKEELVRPVIGDHERPYPRRCRTGRPPTRSDPRCETRIEKPHPVYVPRDETFEEIKQDAFAAGRLKAVFHNLIPKLAATMANSDIPFKCFSEIDKLYIDGVNLGDEENKGIIENLLVGKVMKQVFSSGERLMKYDIPAIVKGDRFAWLRDNEFARQALAGVNPVNIELLKEFPIRSKLDPTIYGPPESAITKELLEQELGGISLEKAMEEKRLFIIDYHDMLLPFIKKMNSLPERKAYASRTILFITKAGVLRPIAIELSLPQTLTSPQNRKVYTQGHDATAHWIWKLAKAHVSSNDAGIHQLVNHWLRTHACMEPYIIATHRQLSSMHPIYKLLHPHTRYTMEINALARQSLINGGGIIEASFSPGKYALELSSAAYKSMWRFDMESLPADLIRRGMAVEDPSMPCGVKLVIDDYPYAADGLLIWSAIKEWVESYVKHFYSESNSIASDVELQEWWSEIKCKGHADKRNEPWWPKLDTKEDLSFILTTIIWVASGQHAAINFGQYPFGGYVPNRPTLMRKLIPQENDSDYEKFIRNPQLFFLSSLPTQLQATKVMAVQDTLSTHSPDEEYLGQVTHLHNHWINDQEVLKLFSKFSTRLEEIEEIINARNKDPSLKSRTGAGVPPYELLLPLSGPGATGRGVPNSISI*