AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0700250

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0700250 MtrunA17_Chr8g0377101 97.540 569 14 0 1 569 348 916 0.0 1159
Msa0700250 MtrunA17_Chr8g0344201 57.624 564 233 4 8 568 366 926 0.0 691
Msa0700250 MtrunA17_Chr3g0118651 50.697 574 275 5 1 569 333 903 0.0 622
Msa0700250 MtrunA17_Chr4g0047281 55.299 519 225 2 50 568 383 894 0.0 619
Msa0700250 MtrunA17_Chr3g0118641 50.960 573 274 5 1 569 333 902 0.0 610
Msa0700250 MtrunA17_Chr4g0033171 50.438 571 276 5 3 569 158 725 0.0 608
Msa0700250 MtrunA17_Chr3g0118621 50.087 573 280 4 1 569 295 865 0.0 573
Msa0700250 MtrunA17_Chr7g0272791 48.227 564 286 4 8 569 308 867 0.0 562
Msa0700250 MtrunA17_Chr2g0329901 49.040 573 263 9 8 569 309 863 0.0 546
Msa0700250 MtrunA17_Chr2g0329911 47.965 565 283 6 8 569 305 861 0.0 545
Msa0700250 MtrunA17_Chr8g0343021 47.788 565 283 6 8 569 309 864 0.0 541
Msa0700250 MtrunA17_Chr1g0191921 47.788 565 287 6 8 569 299 858 0.0 541
Msa0700250 MtrunA17_Chr8g0343031 47.788 565 283 6 8 569 310 865 0.0 536
Msa0700250 MtrunA17_Chr3g0120071 47.909 574 277 8 5 569 298 858 0.0 533
Msa0700250 MtrunA17_Chr1g0205611 45.819 574 291 7 8 569 291 856 0.0 532
Msa0700250 MtrunA17_Chr5g0406871 47.818 573 271 8 8 569 312 867 7.08e-180 530
Msa0700250 MtrunA17_Chr8g0342881 46.397 569 287 7 8 569 299 856 8.44e-180 529
Msa0700250 MtrunA17_Chr8g0342891 45.133 565 300 6 8 569 304 861 7.43e-171 506
Msa0700250 MtrunA17_Chr8g0342971 45.664 565 297 6 8 569 313 870 2.67e-170 505
Msa0700250 MtrunA17_Chr8g0342951 45.664 565 297 6 8 569 311 868 4.28e-170 504
Msa0700250 MtrunA17_Chr8g0342931 44.858 564 303 5 8 569 193 750 1.65e-167 494
Msa0700250 MtrunA17_Chr8g0342921 44.956 565 301 6 8 569 312 869 4.03e-167 497
Msa0700250 MtrunA17_Chr8g0344211 43.894 565 307 6 8 569 311 868 4.27e-167 497
Msa0700250 MtrunA17_Chr8g0343011 44.464 569 298 7 8 569 308 865 4.25e-165 491
Msa0700250 MtrunA17_Chr8g0342901 45.665 519 269 5 58 569 316 828 1.77e-159 476
Msa0700250 MtrunA17_Chr8g0342981 43.924 576 296 8 8 569 261 823 1.41e-158 473
Msa0700250 MtrunA17_Chr8g0343001 44.294 517 267 7 55 569 310 807 4.48e-147 443
Msa0700250 MtrunA17_Chr8g0342991 42.940 517 276 5 54 569 309 807 6.52e-147 443
Msa0700250 MtrunA17_Chr8g0338451 41.591 553 303 9 8 552 310 850 7.80e-139 424
Msa0700250 MtrunA17_Chr6g0471951 39.286 504 263 7 33 532 18 482 1.03e-121 367
Msa0700250 MtrunA17_Chr8g0344241 44.332 397 217 3 175 569 67 461 4.70e-117 355
Msa0700250 MtrunA17_Chr7g0218231 61.345 119 46 0 219 337 14 132 2.98e-49 167
Msa0700250 MtrunA17_Chr6g0468081 60.674 89 35 0 249 337 1 89 5.59e-33 121
Msa0700250 MtrunA17_Chr4g0047271 50.000 92 45 1 477 568 1 91 3.98e-23 94.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0700250 AT1G67560.1 71.030 573 161 3 1 569 346 917 0.0 858
Msa0700250 AT1G72520.1 57.979 564 234 3 8 569 364 926 0.0 694
Msa0700250 AT1G17420.1 57.371 563 238 2 8 569 358 919 0.0 682
Msa0700250 AT3G45140.1 53.180 566 256 5 7 569 337 896 0.0 635
Msa0700250 AT3G45140.2 53.180 566 256 5 7 569 195 754 0.0 633
Msa0700250 AT1G55020.1 48.776 572 272 8 8 569 299 859 0.0 568
Msa0700250 AT3G22400.1 44.912 570 302 6 8 569 321 886 3.79e-176 521

Find 247 sgRNAs with CRISPR-Local

Find 367 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGTAACTTATCGTTTAAATT+AGG 0.106195 4_4:+71144019 None:intergenic
TCCTTTGTTATTGCTGATTC+TGG 0.123296 4_4:+71141824 None:intergenic
TTCCCCTGACGAAGAGTATT+TGG 0.159442 4_4:-71140007 Msa0700250:CDS
CTAACAAGTTCCTCTTTATC+AGG 0.169266 4_4:+71143009 None:intergenic
AGAATTTACTAAACAATTTC+AGG 0.178920 4_4:+71139938 None:intergenic
TTATATTGATGGTGTTAATT+TGG 0.191367 4_4:-71142600 Msa0700250:CDS
CGCCATAGTGGCTGCAAGTT+TGG 0.215210 4_4:+71142667 None:intergenic
TTCAATAGCTCAATATTTAC+TGG 0.223964 4_4:+71141971 None:intergenic
CAACATGCTGCTATAAATTT+CGG 0.244386 4_4:-71140213 Msa0700250:CDS
TACTTATATTCGAGAATTAA+AGG 0.247462 4_4:+71143990 None:intergenic
AGATTCTACCCATTCTTTAA+TGG 0.248411 4_4:+71140419 None:intergenic
TATTATTATCATCATGTTAT+AGG 0.251667 4_4:+71143756 None:intergenic
AGAATAAAATATTTAAGTTT+TGG 0.254298 4_4:+71139398 None:intergenic
GCTCGACAAAGTTTAATAAA+TGG 0.267126 4_4:-71141105 Msa0700250:CDS
GGAGGATGATTTCCGATAAA+TGG 0.273826 4_4:+71143486 None:intergenic
TATATTGATGGTGTTAATTT+GGG 0.275468 4_4:-71142599 Msa0700250:CDS
GTAACTTATCGTTTAAATTA+GGG 0.278641 4_4:+71144020 None:intergenic
TCATCTCGCGGCACATAAAC+AGG 0.295508 4_4:+71142761 None:intergenic
TTCAAAGGAGTTCCATTTAT+CGG 0.310252 4_4:-71143498 Msa0700250:five_prime_UTR
CTCTTCCGGCAGATCTTATT+CGG 0.323141 4_4:-71140987 Msa0700250:CDS
CATTCCTTTCAAGTGTTTCT+CGG 0.335053 4_4:-71142636 Msa0700250:CDS
ATTGACAAGCTTTATATTGA+TGG 0.336229 4_4:-71142611 Msa0700250:CDS
GCCATAGTGGCTGCAAGTTT+GGG 0.336382 4_4:+71142668 None:intergenic
TCATACTTACGACAATCATA+TGG 0.339367 4_4:-71140248 Msa0700250:CDS
TGTGTTAGCTGGAAAGAAAA+TGG 0.341273 4_4:+71143445 None:intergenic
AATTTCGGGCAATACCCTTT+TGG 0.341455 4_4:-71140198 Msa0700250:CDS
TTGGGAGATGAAGAGAATAA+AGG 0.344498 4_4:-71142581 Msa0700250:CDS
TCCTCTTTGGTATCTAGTTT+AGG 0.345137 4_4:+71140279 None:intergenic
AATTATAAATGCAAGAAATA+AGG 0.345568 4_4:-71139890 Msa0700250:CDS
ATGAAACAGGTCTTCAGTTC+TGG 0.346773 4_4:-71142527 Msa0700250:CDS
ATGCCACAGCACACTGGATT+TGG 0.347347 4_4:-71141445 Msa0700250:CDS
GACATCCCAGCTATTGTAAA+AGG 0.352857 4_4:-71142485 Msa0700250:intron
AATTAATCCAAGTGGGTAAC+TGG 0.356293 4_4:-71143889 Msa0700250:five_prime_UTR
ACAACATATGGAATGTTTGA+TGG 0.357193 4_4:+71143593 None:intergenic
TACCAAAGTAATGGCTGTTC+AGG 0.357660 4_4:-71140046 Msa0700250:CDS
AGATAGATTTGCTTGGTTGC+GGG 0.363128 4_4:-71142032 Msa0700250:CDS
AAACTAGATCCAACTATCTA+TGG 0.366904 4_4:-71141851 Msa0700250:CDS
AACATGCTGCTATAAATTTC+GGG 0.376754 4_4:-71140212 Msa0700250:CDS
TGACTCATTTGCATAATCAT+TGG 0.376857 4_4:-71139978 Msa0700250:CDS
CGATGCAATTGAATTTGATT+CGG 0.377861 4_4:+71140377 None:intergenic
ATCATCCTCCACGGCTTCAC+TGG 0.380490 4_4:-71143473 Msa0700250:five_prime_UTR
GACTCCACGACCAGTTGCTC+CGG 0.383763 4_4:+71139798 None:intergenic
GAGCATGTGGAGATTTGATA+TGG 0.388119 4_4:-71141013 Msa0700250:CDS
ACAATCATATGGGTTGCTTC+AGG 0.388863 4_4:-71140237 Msa0700250:CDS
TTCACAGTGCCAAGTGACTT+TGG 0.393066 4_4:-71143554 Msa0700250:five_prime_UTR
GGATGTAGCAACTTGTAAAT+AGG 0.393191 4_4:+71141162 None:intergenic
CTATGAGTAGCAATTATATA+TGG 0.396742 4_4:+71141204 None:intergenic
TGATTTCACTCCACCACTCT+TGG 0.397874 4_4:+71140343 None:intergenic
GAACTCCTTTGAACGAAGAT+TGG 0.398217 4_4:+71143508 None:intergenic
TATCCTCGTCGCTGTAGAAC+CGG 0.398710 4_4:-71142958 Msa0700250:five_prime_UTR
TAGTGGTCTTACTTCTTAGT+GGG 0.399793 4_4:-71143946 Msa0700250:five_prime_UTR
ATTTGATATGGAGTCTCTTC+CGG 0.403194 4_4:-71141001 Msa0700250:CDS
GTTCTACAGCGACGAGGATA+AGG 0.403861 4_4:+71142961 None:intergenic
TGGGAGATGAAGAGAATAAA+GGG 0.405860 4_4:-71142580 Msa0700250:CDS
CTGCAGATGGACTTCTAATC+TGG 0.406327 4_4:-71140446 Msa0700250:CDS
TATGAAAGATAGGTCCTCTT+TGG 0.407757 4_4:+71140266 None:intergenic
TTGAATATGATTCTACTTTG+AGG 0.408949 4_4:+71143398 None:intergenic
GCAGAGTATTCCACAACATA+TGG 0.411374 4_4:+71143581 None:intergenic
ACCCAAACTTGCAGCCACTA+TGG 0.412388 4_4:-71142669 Msa0700250:exon
TCCCCTGACGAAGAGTATTT+GGG 0.416587 4_4:-71140006 Msa0700250:CDS
TGAATATGATTCTACTTTGA+GGG 0.420439 4_4:+71143399 None:intergenic
TTGTCAGGACCCGGAGCAAC+TGG 0.420733 4_4:-71139808 Msa0700250:CDS
ACCCACTTGGATTAATTTGT+TGG 0.423920 4_4:+71143895 None:intergenic
AGCAATAACAAAGGAACTAC+TGG 0.430247 4_4:-71141816 Msa0700250:CDS
GTTGAGTAGGCAATGATGAT+AGG 0.431532 4_4:+71140076 None:intergenic
GAGATAGATTTGCTTGGTTG+CGG 0.431829 4_4:-71142033 Msa0700250:CDS
TATGGAATGTTTGATGGCTT+CGG 0.432986 4_4:+71143599 None:intergenic
TTTGCAAGGCAAGCCTTAGC+TGG 0.434446 4_4:-71142001 Msa0700250:CDS
GATCATATAGATATACTGTT+GGG 0.436421 4_4:+71139775 None:intergenic
TGGTGGAATAAGCTTGGAAA+AGG 0.441048 4_4:-71141783 Msa0700250:intron
AAGCGGTGCTGCCCAAGAAC+AGG 0.441538 4_4:-71143088 Msa0700250:five_prime_UTR
AGGGTTGCCTAACTCATTGT+AGG 0.442421 4_4:+71143029 None:intergenic
TCTGGTCTGCCATTAAAGAA+TGG 0.443639 4_4:-71140428 Msa0700250:CDS
CCAAGTTTGAAAAGTAGAAC+TGG 0.445657 4_4:-71139865 Msa0700250:CDS
TTCATCAACTAGTAAATCAT+TGG 0.446490 4_4:-71141382 Msa0700250:intron
GGACCCGGAGCAACTGGTCG+TGG 0.447142 4_4:-71139802 Msa0700250:CDS
ATCCAAGTGGGTAACTGGTA+AGG 0.447500 4_4:-71143884 Msa0700250:five_prime_UTR
AGAAGTCCATCTGCAGCATA+AGG 0.447808 4_4:+71140453 None:intergenic
GTGGAGTGAAATCAAGTGTA+AGG 0.450222 4_4:-71140334 Msa0700250:CDS
ATTGATCAATTCGTTTATGC+TGG 0.453876 4_4:-71139605 Msa0700250:three_prime_UTR
AAAGGAAGCAAAAGTTCATA+AGG 0.455254 4_4:+71139829 None:intergenic
CATACTTACGACAATCATAT+GGG 0.460891 4_4:-71140247 Msa0700250:CDS
TGACCCAAATACTCTTCGTC+AGG 0.461331 4_4:+71140003 None:intergenic
GAGTTCATCTTCTTGATGAA+TGG 0.462879 4_4:+71141611 None:intergenic
AGAGAAAGCTCAATAGCTAT+AGG 0.463940 4_4:+71141521 None:intergenic
AGTAGATTCTACTCTCTCAA+TGG 0.464801 4_4:+71143830 None:intergenic
TTTACACCACAGGGCATTGA+AGG 0.466878 4_4:+71140495 None:intergenic
TCCATTGTATAGCGCGTATG+AGG 0.467969 4_4:+71141141 None:intergenic
CATTACCAATCTTCGTTCAA+AGG 0.468216 4_4:-71143513 Msa0700250:five_prime_UTR
GTAGATTCTACTCTCTCAAT+GGG 0.468404 4_4:+71143831 None:intergenic
CTCATGAGGGTAGGACGGTT+AGG 0.468763 4_4:+71140165 None:intergenic
GAACTTGTTAGACCAGTCAT+TGG 0.470623 4_4:-71142997 Msa0700250:five_prime_UTR
CTGGTCTGCCATTAAAGAAT+GGG 0.472539 4_4:-71140427 Msa0700250:CDS
GGATCTAGTTTGCTGCGGAT+TGG 0.473071 4_4:+71141863 None:intergenic
AGTAAATATTGAGCTATTGA+AGG 0.476774 4_4:-71141969 Msa0700250:intron
TAATCATTGGATCAATGATC+AGG 0.480482 4_4:-71139965 Msa0700250:CDS
TTGGTAGCTTGAAGTTGAGT+AGG 0.480940 4_4:+71140063 None:intergenic
TACTAGACTTGAGGAGATAG+AGG 0.484216 4_4:-71139914 Msa0700250:CDS
TTAGGCACATATCCTCCAAA+AGG 0.484226 4_4:+71140183 None:intergenic
TCGATCAATTTCGATTGCCT+TGG 0.485249 4_4:-71139754 Msa0700250:three_prime_UTR
ATAGTGGTCTTACTTCTTAG+TGG 0.485796 4_4:-71143947 Msa0700250:five_prime_UTR
ACAAAGTTTAATAAATGGAG+GGG 0.485869 4_4:-71141100 Msa0700250:CDS
GGTGGGAAAAGTGATGAAAC+AGG 0.490922 4_4:-71142540 Msa0700250:CDS
GAACTACTGGAGCAAGAACT+TGG 0.493456 4_4:-71141803 Msa0700250:CDS
ATAAACGAATTGATCAATAT+CGG 0.493904 4_4:+71139610 None:intergenic
GGAGCGAGTAGGAGGTCTTC+CGG 0.493994 4_4:+71142939 None:intergenic
ACTACATGTGTAAATTTGCA+AGG 0.494315 4_4:-71144255 Msa0700250:five_prime_UTR
AAACAGGATGCATTTGCTGC+TGG 0.495438 4_4:-71142722 Msa0700250:five_prime_UTR
CGCCGAAGATCTTTGATACC+AGG 0.496253 4_4:+71143135 None:intergenic
TTGCTTCCTTTGTCAGGACC+CGG 0.497544 4_4:-71139817 Msa0700250:CDS
CGAATCAAATTCAATTGCAT+CGG 0.498807 4_4:-71140376 Msa0700250:CDS
GAGGCATAAGCTTTCCTCTC+GGG 0.499830 4_4:+71141584 None:intergenic
TTGTAATGAAGAGAATCGTC+CGG 0.500870 4_4:+71141561 None:intergenic
TCCCTTACCAGTTACCCACT+TGG 0.501084 4_4:+71143882 None:intergenic
GTGTTAGCTGGAAAGAAAAT+GGG 0.502615 4_4:+71143446 None:intergenic
CTCTCATGATCTCCAATGAC+TGG 0.509818 4_4:+71142985 None:intergenic
CACTTCAAATCATAAGTTTG+AGG 0.511119 4_4:+71139234 None:intergenic
TACTGGATTGACTCCAGCTA+AGG 0.511465 4_4:+71141988 None:intergenic
ATAATAGAAAATCTCTTGGT+GGG 0.512813 4_4:-71142557 Msa0700250:CDS
TTGTTATTGCTGATTCTGGA+GGG 0.513518 4_4:+71141828 None:intergenic
TATGCTCCCTACAATGAGTT+AGG 0.514068 4_4:-71143036 Msa0700250:five_prime_UTR
CACCTGGTATCAAAGATCTT+CGG 0.514238 4_4:-71143137 Msa0700250:five_prime_UTR
GAATGAATCCATGTGTTAGC+TGG 0.514422 4_4:+71143434 None:intergenic
AGAACTTGGTGGAATAAGCT+TGG 0.516371 4_4:-71141789 Msa0700250:CDS
CAAGATCTATGGTCAAGGTA+GGG 0.517590 4_4:-71139558 Msa0700250:three_prime_UTR
TTGTCGTAAGTATGAAAGAT+AGG 0.519427 4_4:+71140256 None:intergenic
TAGTCCTGGAAAATATGCCT+TGG 0.520574 4_4:-71141058 Msa0700250:CDS
CGCGGCACATAAACAGGGTG+TGG 0.521515 4_4:+71142767 None:intergenic
GTCCTGAACAGCCATTACTT+TGG 0.521910 4_4:+71140044 None:intergenic
ATTCTCTTCATTACAAAGGC+CGG 0.525411 4_4:-71141554 Msa0700250:CDS
TAAAAGGAATTGTATCTCCA+AGG 0.530844 4_4:+71139425 None:intergenic
AGGGATAATAGAAAATCTCT+TGG 0.530957 4_4:-71142561 Msa0700250:CDS
TACCTCCGAATAAGATCTGC+CGG 0.531248 4_4:+71140982 None:intergenic
GAAGTCCATCTGCAGCATAA+GGG 0.532536 4_4:+71140454 None:intergenic
ACTCCACGACCAGTTGCTCC+GGG 0.533633 4_4:+71139799 None:intergenic
ATCAAACATTCCATATGTTG+TGG 0.534612 4_4:-71143591 Msa0700250:five_prime_UTR
CGATCATATAGATATACTGT+TGG 0.534665 4_4:+71139774 None:intergenic
CATGTTAGCTCAAATGATGC+TGG 0.535268 4_4:-71141407 Msa0700250:CDS
GTTAGGCAACCCTGATAAAG+AGG 0.537690 4_4:-71143019 Msa0700250:five_prime_UTR
TCTGGAGGGCCATAGATAGT+TGG 0.541049 4_4:+71141842 None:intergenic
TAACAAGTTCCTCTTTATCA+GGG 0.541380 4_4:+71143010 None:intergenic
ATATGTTAATGAACTATATG+TGG 0.543283 4_4:-71144181 Msa0700250:five_prime_UTR
GAATTGTATCTCCAAGGGGT+TGG 0.543585 4_4:+71139431 None:intergenic
TCCAAGTGGGTAACTGGTAA+GGG 0.544373 4_4:-71143883 Msa0700250:five_prime_UTR
TCCGTCGTCGGCAGCATGTG+AGG 0.544434 4_4:+71143800 None:intergenic
AAAAGGAATTGTATCTCCAA+GGG 0.545169 4_4:+71139426 None:intergenic
TTGAAAAGTAGAACTGGTGC+AGG 0.545990 4_4:-71139859 Msa0700250:CDS
ACAAGATCTATGGTCAAGGT+AGG 0.546021 4_4:-71139559 Msa0700250:three_prime_UTR
CATGACTTATATGCGACATA+TGG 0.549105 4_4:+71139469 None:intergenic
GATAATAGAAAATCTCTTGG+TGG 0.550624 4_4:-71142558 Msa0700250:CDS
ACAAAAGAAATGAACCTTGG+TGG 0.550976 4_4:-71140302 Msa0700250:CDS
CGACAAAGTTTAATAAATGG+AGG 0.552738 4_4:-71141102 Msa0700250:CDS
AAGATCTATGGTCAAGGTAG+GGG 0.553229 4_4:-71139557 Msa0700250:three_prime_UTR
CTACATGTGTAAATTTGCAA+GGG 0.556653 4_4:-71144254 Msa0700250:five_prime_UTR
TAAATTCTCTACTAGACTTG+AGG 0.557721 4_4:-71139923 Msa0700250:CDS
TTGAGAATAATAGCCTTACA+AGG 0.559596 4_4:-71139530 Msa0700250:three_prime_UTR
TTACAGGAGATAGATTTGCT+TGG 0.559693 4_4:-71142039 Msa0700250:intron
TCCTCATACGCGCTATACAA+TGG 0.560220 4_4:-71141142 Msa0700250:CDS
TTGGTAATGAGAATAGCAGC+TGG 0.560990 4_4:+71143527 None:intergenic
TTGCTAAGCACAAGGGGAAG+CGG 0.561266 4_4:-71143105 Msa0700250:five_prime_UTR
TTTGTTATTGCTGATTCTGG+AGG 0.561343 4_4:+71141827 None:intergenic
AGAGGAAAGCTTATGCCTCC+CGG 0.561811 4_4:-71141580 Msa0700250:CDS
GGAGGCATAAGCTTTCCTCT+CGG 0.565442 4_4:+71141583 None:intergenic
GACTACCCTTATGCTGCAGA+TGG 0.565485 4_4:-71140459 Msa0700250:CDS
TGTAATGAAGAGAATCGTCC+GGG 0.566537 4_4:+71141562 None:intergenic
TCCAGTGTGCTGTGGCATCA+TGG 0.566754 4_4:+71141450 None:intergenic
GTTAAGGACTCATGCATGCA+TGG 0.567574 4_4:-71141229 Msa0700250:CDS
ACTTCAAGCTACCAAAGTAA+TGG 0.567833 4_4:-71140055 Msa0700250:CDS
GAATGTGCTTTCCAGGGGCA+TGG 0.568313 4_4:-71140529 Msa0700250:intron
GCTTCACTAAGCCAACCCCT+TGG 0.569548 4_4:-71139442 Msa0700250:three_prime_UTR
TGCGGGACAACGAATTTGCA+AGG 0.570627 4_4:-71142015 Msa0700250:CDS
TGGGTCCTCCAGTGAAGCCG+TGG 0.572006 4_4:+71143465 None:intergenic
ATACCAGGTGGTGTTTGTGA+TGG 0.574236 4_4:+71143150 None:intergenic
GGAAGACCTCCTACTCGCTC+CGG 0.576419 4_4:-71142937 Msa0700250:intron
TGGAATCTTACGTAGGAGGT+TGG 0.578287 4_4:-71143625 Msa0700250:five_prime_UTR
GACAAAGTTTAATAAATGGA+GGG 0.578318 4_4:-71141101 Msa0700250:CDS
GGGTTGCCTAACTCATTGTA+GGG 0.579957 4_4:+71143030 None:intergenic
ATCCTCCACGGCTTCACTGG+AGG 0.580284 4_4:-71143470 Msa0700250:five_prime_UTR
CACCAACAAATTAATCCAAG+TGG 0.584585 4_4:-71143897 Msa0700250:five_prime_UTR
TATCTAACAAACGAGATATG+TGG 0.586072 4_4:+71139279 None:intergenic
AGCTATAGGACGCAGAACAC+CGG 0.590530 4_4:+71141535 None:intergenic
AGTGGTCTTACTTCTTAGTG+GGG 0.590897 4_4:-71143945 Msa0700250:five_prime_UTR
TAGGCACATATCCTCCAAAA+GGG 0.592242 4_4:+71140184 None:intergenic
ACTCTACCGGAGCGAGTAGG+AGG 0.596562 4_4:+71142931 None:intergenic
CTTGTGCAAAATATACATGA+AGG 0.598263 4_4:+71139577 None:intergenic
CAAGTTATATTATAATGCCA+AGG 0.600956 4_4:+71139737 None:intergenic
TTTACACTGACAGGCTATGG+AGG 0.600987 4_4:-71141675 Msa0700250:intron
CAAGTTTGGGTATGAGATTG+TGG 0.602086 4_4:+71142681 None:intergenic
TGCGGCAAAGTAAGTGTCTG+AGG 0.602592 4_4:+71141497 None:intergenic
GACGATTCTCTTCATTACAA+AGG 0.603810 4_4:-71141558 Msa0700250:CDS
CTGACAAAAGAAATGAACCT+TGG 0.604053 4_4:-71140305 Msa0700250:CDS
CAGCAGCTTACAAGAGCATG+TGG 0.604299 4_4:-71141026 Msa0700250:CDS
TGGTAATGAGAATAGCAGCT+GGG 0.604515 4_4:+71143528 None:intergenic
GCCATGATGCCACAGCACAC+TGG 0.604888 4_4:-71141451 Msa0700250:CDS
AGCTGCTGAACTAAGCTCCA+AGG 0.606766 4_4:+71141041 None:intergenic
GCCTCACATGCTGCCGACGA+CGG 0.609104 4_4:-71143801 Msa0700250:five_prime_UTR
TTGCACAAGATCTATGGTCA+AGG 0.609401 4_4:-71139563 Msa0700250:three_prime_UTR
CAAAGTTTAATAAATGGAGG+GGG 0.611294 4_4:-71141099 Msa0700250:CDS
TTACCATCACAAACACCACC+TGG 0.612280 4_4:-71143153 Msa0700250:five_prime_UTR
AGCGTGGAATCTTACGTAGG+AGG 0.612694 4_4:-71143629 Msa0700250:five_prime_UTR
GGGGTTGGCTTAGTGAAGCA+TGG 0.616417 4_4:+71139446 None:intergenic
GACCCAAATACTCTTCGTCA+GGG 0.617656 4_4:+71140004 None:intergenic
GTGAGGATTTGCTAAGCACA+AGG 0.617992 4_4:-71143113 Msa0700250:five_prime_UTR
TCTTCAAAAGTTTCATCTCG+CGG 0.618364 4_4:+71142749 None:intergenic
ACCAACAAATTAATCCAAGT+GGG 0.619865 4_4:-71143896 Msa0700250:five_prime_UTR
ATGTTGAGCTCCAAGAGTGG+TGG 0.620332 4_4:-71140353 Msa0700250:CDS
GTTGCTCCGGGTCCTGACAA+AGG 0.621179 4_4:+71139811 None:intergenic
CTTCCAAATCCAGTGTGCTG+TGG 0.622388 4_4:+71141442 None:intergenic
ACTAAAATAGTGTATCAGAT+CGG 0.623685 4_4:+71139695 None:intergenic
GCTGGGGATCCAAAGTCACT+TGG 0.625360 4_4:+71143545 None:intergenic
TTATCGGAAATCATCCTCCA+CGG 0.626060 4_4:-71143482 Msa0700250:five_prime_UTR
CTACTGGAGCAAGAACTTGG+TGG 0.628297 4_4:-71141800 Msa0700250:CDS
ATCATATAGATATACTGTTG+GGG 0.629144 4_4:+71139776 None:intergenic
TTACACCACAGGGCATTGAA+GGG 0.629797 4_4:+71140496 None:intergenic
TTCCGGCAGATCTTATTCGG+AGG 0.631003 4_4:-71140984 Msa0700250:intron
GCGGTTAATATCTCCGTCGT+CGG 0.631798 4_4:+71143788 None:intergenic
ATCTCCGAGAAACACTTGAA+AGG 0.632975 4_4:+71142632 None:intergenic
GAGGATTTGCTAAGCACAAG+GGG 0.634095 4_4:-71143111 Msa0700250:five_prime_UTR
ATGTTATAGGTAGTTAGCAG+CGG 0.634219 4_4:+71143769 None:intergenic
TATCAAAGATCTTCGGCGTG+AGG 0.635500 4_4:-71143130 Msa0700250:five_prime_UTR
TCAATTCTAGTCTCACATCG+TGG 0.638934 4_4:+71142794 None:intergenic
GGAAGCAAAAGTTCATAAGG+AGG 0.642933 4_4:+71139832 None:intergenic
GTCCTCCAGTGAAGCCGTGG+AGG 0.643200 4_4:+71143468 None:intergenic
AGGTCTTCAGTTCTGGAGAG+CGG 0.643829 4_4:-71142520 Msa0700250:CDS
CATCTCGCGGCACATAAACA+GGG 0.644374 4_4:+71142762 None:intergenic
CGGATGTTGAGCTCCAAGAG+TGG 0.647233 4_4:-71140356 Msa0700250:CDS
AATGTCTGAATTCGCCATAG+TGG 0.648310 4_4:+71142655 None:intergenic
TGGAGTGAAATCAAGTGTAA+GGG 0.653346 4_4:-71140333 Msa0700250:CDS
ACCCAAATACTCTTCGTCAG+GGG 0.656711 4_4:+71140005 None:intergenic
GTATCTAGTTTAGGCCACCA+AGG 0.657149 4_4:+71140288 None:intergenic
TCCAGAATCAGCAATAACAA+AGG 0.658477 4_4:-71141825 Msa0700250:CDS
GGTAATGAGAATAGCAGCTG+GGG 0.660706 4_4:+71143529 None:intergenic
TGATCAGAATCTAAATGCAG+CGG 0.663704 4_4:+71144411 None:intergenic
AGATGAACTCTTTGCCCGAG+AGG 0.664250 4_4:-71141598 Msa0700250:CDS
TGAGGATTTGCTAAGCACAA+GGG 0.666301 4_4:-71143112 Msa0700250:five_prime_UTR
TGAACTCTACCGGAGCGAGT+AGG 0.669590 4_4:+71142928 None:intergenic
AATAGAAAAGTTTACACACA+AGG 0.676340 4_4:-71141473 Msa0700250:CDS
TAGTTGGATCTAGTTTGCTG+CGG 0.682588 4_4:+71141858 None:intergenic
TGAATGGCAAAAGCATGTCA+TGG 0.684212 4_4:+71141627 None:intergenic
TGAGAATAATAGCCTTACAA+GGG 0.685149 4_4:-71139529 Msa0700250:three_prime_UTR
AAAGGAATTGTATCTCCAAG+GGG 0.689244 4_4:+71139427 None:intergenic
GCCTAAACTAGATACCAAAG+AGG 0.696249 4_4:-71140280 Msa0700250:CDS
CGAAGATCTTTGATACCAGG+TGG 0.696678 4_4:+71143138 None:intergenic
AATGAAGAGAATCGTCCGGG+AGG 0.719002 4_4:+71141565 None:intergenic
AAAAGCGTGGAATCTTACGT+AGG 0.726945 4_4:-71143632 Msa0700250:five_prime_UTR
CTTCCGGTTCTACAGCGACG+AGG 0.730830 4_4:+71142955 None:intergenic
GAAGACCCTTCAATGCCCTG+TGG 0.756949 4_4:-71140501 Msa0700250:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! CATATAAGATTTTTTTTTTA+TGG + chr4_4:71139471-71139490 None:intergenic 10.0%
!! CAATAATAAATAATATATGA+TGG + chr4_4:71142922-71142941 None:intergenic 10.0%
!!! AGAATAAAATATTTAAGTTT+TGG + chr4_4:71144272-71144291 None:intergenic 10.0%
!!! TTCATTTATACAATTTTTTA+TGG - chr4_4:71144350-71144369 Msa0700250:five_prime_UTR 10.0%
!!! ATTGTGGATAATTTTTTTTA+GGG + chr4_4:71139550-71139569 None:intergenic 15.0%
!!! AATTGTGGATAATTTTTTTT+AGG + chr4_4:71139551-71139570 None:intergenic 15.0%
!! TCTTCAAAAAAAAGAAATTA+GGG + chr4_4:71139611-71139630 None:intergenic 15.0%
!! TATTATTATCATCATGTTAT+AGG + chr4_4:71139914-71139933 None:intergenic 15.0%
!!! TTTTTCTTACTTTTTTTTTG+TGG - chr4_4:71140765-71140784 Msa0700250:intron 15.0%
!! ATAAAAAATGTAACACAATT+AGG - chr4_4:71142949-71142968 Msa0700250:five_prime_UTR 15.0%
!! TAAAAAATGTAACACAATTA+GGG - chr4_4:71142950-71142969 Msa0700250:five_prime_UTR 15.0%
!! AATTATAAATGCAAGAAATA+AGG - chr4_4:71143777-71143796 Msa0700250:five_prime_UTR 15.0%
!!! TTTAAGTTTTGGTAAATAAA+AGG + chr4_4:71144261-71144280 None:intergenic 15.0%
!! AGATGTGAAAAATAAAAAAT+GGG + chr4_4:71144330-71144349 None:intergenic 15.0%
!! AAGATGTGAAAAATAAAAAA+TGG + chr4_4:71144331-71144350 None:intergenic 15.0%
!! ATATGTTAATGAACTATATG+TGG - chr4_4:71139486-71139505 Msa0700250:three_prime_UTR 20.0%
!! CTCTTCAAAAAAAAGAAATT+AGG + chr4_4:71139612-71139631 None:intergenic 20.0%
!!! CTAATTTCTTTTTTTTGAAG+AGG - chr4_4:71139610-71139629 Msa0700250:three_prime_UTR 20.0%
!! GTAACTTATCGTTTAAATTA+GGG + chr4_4:71139650-71139669 None:intergenic 20.0%
!! TGTAACTTATCGTTTAAATT+AGG + chr4_4:71139651-71139670 None:intergenic 20.0%
!! TACTTATATTCGAGAATTAA+AGG + chr4_4:71139680-71139699 None:intergenic 20.0%
!! AAAAATGTATCAATGTATAG+TGG - chr4_4:71139704-71139723 Msa0700250:three_prime_UTR 20.0%
!! CAAAACCTAAAAATTCAAAA+TGG + chr4_4:71140793-71140812 None:intergenic 20.0%
!!! CATTTTGAATTTTTAGGTTT+TGG - chr4_4:71140791-71140810 Msa0700250:intron 20.0%
!!! TTATATTGATGGTGTTAATT+TGG - chr4_4:71141067-71141086 Msa0700250:CDS 20.0%
!!! TATATTGATGGTGTTAATTT+GGG - chr4_4:71141068-71141087 Msa0700250:CDS 20.0%
!! TCAACTTGAAACTAAAATTT+GGG + chr4_4:71141359-71141378 None:intergenic 20.0%
!! TTCAACTTGAAACTAAAATT+TGG + chr4_4:71141360-71141379 None:intergenic 20.0%
!! ACAAAGTTATATTGTATTCA+AGG + chr4_4:71141562-71141581 None:intergenic 20.0%
!!! CTTTTTTATTCATACCAATT+AGG - chr4_4:71141728-71141747 Msa0700250:intron 20.0%
!! AAAAAATGTAACACAATTAG+GGG - chr4_4:71142951-71142970 Msa0700250:five_prime_UTR 20.0%
!! ATGCAATTGAAAATTTGAAA+CGG - chr4_4:71142996-71143015 Msa0700250:five_prime_UTR 20.0%
!!! TATTAACAGATTGCTATTAA+AGG + chr4_4:71143111-71143130 None:intergenic 20.0%
!! AGAATTTACTAAACAATTTC+AGG + chr4_4:71143732-71143751 None:intergenic 20.0%
!! ATAAACGAATTGATCAATAT+CGG + chr4_4:71144060-71144079 None:intergenic 20.0%
!! ATTTTTATGCTGGATAATGA+AGG + chr4_4:71139390-71139409 None:intergenic 25.0%
!! CATGTAGTTAATTTTTATGC+TGG + chr4_4:71139400-71139419 None:intergenic 25.0%
!!! TTTTTTTAGGGAATGAATTG+TGG + chr4_4:71139538-71139557 None:intergenic 25.0%
! AATCTAGTCTCGTTAAAAAA+AGG + chr4_4:71139961-71139980 None:intergenic 25.0%
!! ACATTTTCAGCTACTAATAA+TGG - chr4_4:71140011-71140030 Msa0700250:CDS 25.0%
! TGAATATGATTCTACTTTGA+GGG + chr4_4:71140271-71140290 None:intergenic 25.0%
! TTGAATATGATTCTACTTTG+AGG + chr4_4:71140272-71140291 None:intergenic 25.0%
!!! AACTTTTGAAGAAATCAAAC+AGG - chr4_4:71140929-71140948 Msa0700250:intron 25.0%
!! ATTGACAAGCTTTATATTGA+TGG - chr4_4:71141056-71141075 Msa0700250:CDS 25.0%
! ATAATAGAAAATCTCTTGGT+GGG - chr4_4:71141110-71141129 Msa0700250:CDS 25.0%
! CAACTTGAAACTAAAATTTG+GGG + chr4_4:71141358-71141377 None:intergenic 25.0%
!!! TAGACATGAAGAATTGATTT+TGG + chr4_4:71141431-71141450 None:intergenic 25.0%
!! CAATTCTTCATGTCTAAAAT+CGG - chr4_4:71141435-71141454 Msa0700250:CDS 25.0%
! TGAAACCAAACATGTTAAAA+AGG - chr4_4:71141476-71141495 Msa0700250:CDS 25.0%
! TAAAAAAAATGTGACTCATG+AGG + chr4_4:71141521-71141540 None:intergenic 25.0%
!!! CACATTTTTTTTACTGTACT+AGG - chr4_4:71141528-71141547 Msa0700250:CDS 25.0%
! TTCAATAGCTCAATATTTAC+TGG + chr4_4:71141699-71141718 None:intergenic 25.0%
! AGTAAATATTGAGCTATTGA+AGG - chr4_4:71141698-71141717 Msa0700250:intron 25.0%
! ACAAACAAACAAACAAAACA+TGG + chr4_4:71141916-71141935 None:intergenic 25.0%
!! GTGTAAACTTTTCTATTTTG+CGG + chr4_4:71142191-71142210 None:intergenic 25.0%
! AATAGAAAAGTTTACACACA+AGG - chr4_4:71142194-71142213 Msa0700250:intron 25.0%
! TTCATCAACTAGTAAATCAT+TGG - chr4_4:71142285-71142304 Msa0700250:intron 25.0%
! TAAATCATTGGTAAGACAAT+TGG - chr4_4:71142297-71142316 Msa0700250:intron 25.0%
! AATGACTTGATCAAAAGAAA+TGG - chr4_4:71142355-71142374 Msa0700250:intron 25.0%
! TTAACCTGCATATTACATAT+TGG + chr4_4:71142423-71142442 None:intergenic 25.0%
! AATATGTAATATGCAGGTTA+AGG - chr4_4:71142422-71142441 Msa0700250:intron 25.0%
! CTATGAGTAGCAATTATATA+TGG + chr4_4:71142466-71142485 None:intergenic 25.0%
! GACAAAGTTTAATAAATGGA+GGG - chr4_4:71142566-71142585 Msa0700250:CDS 25.0%
! ACAAAGTTTAATAAATGGAG+GGG - chr4_4:71142567-71142586 Msa0700250:CDS 25.0%
! AATGATACCATATTCATGAA+TGG + chr4_4:71142784-71142803 None:intergenic 25.0%
! AACAAAGGTTGAACTTAAAA+TGG + chr4_4:71143069-71143088 None:intergenic 25.0%
! TATATATGTCCTATGAACAA+AGG + chr4_4:71143084-71143103 None:intergenic 25.0%
!! AATCAGAATCATTTTCTTGA+GGG + chr4_4:71143537-71143556 None:intergenic 25.0%
!! TAATCAGAATCATTTTCTTG+AGG + chr4_4:71143538-71143557 None:intergenic 25.0%
! ATCATATAGATATACTGTTG+GGG + chr4_4:71143894-71143913 None:intergenic 25.0%
! GATCATATAGATATACTGTT+GGG + chr4_4:71143895-71143914 None:intergenic 25.0%
! CAAGTTATATTATAATGCCA+AGG + chr4_4:71143933-71143952 None:intergenic 25.0%
! ACTAAAATAGTGTATCAGAT+CGG + chr4_4:71143975-71143994 None:intergenic 25.0%
!! TATATTTTGCACAAGATCTA+TGG - chr4_4:71144098-71144117 Msa0700250:five_prime_UTR 25.0%
ACTACATGTGTAAATTTGCA+AGG - chr4_4:71139412-71139431 Msa0700250:three_prime_UTR 30.0%
CTACATGTGTAAATTTGCAA+GGG - chr4_4:71139413-71139432 Msa0700250:three_prime_UTR 30.0%
!!! AAGAAATTAGGGTTTTGAGA+TGG + chr4_4:71139600-71139619 None:intergenic 30.0%
ACCAACAAATTAATCCAAGT+GGG - chr4_4:71139771-71139790 Msa0700250:exon 30.0%
! TACTAATAATGGAAAAAGCG+TGG - chr4_4:71140022-71140041 Msa0700250:CDS 30.0%
ACAACATATGGAATGTTTGA+TGG + chr4_4:71140077-71140096 None:intergenic 30.0%
ATCAAACATTCCATATGTTG+TGG - chr4_4:71140076-71140095 Msa0700250:CDS 30.0%
TTCAAAGGAGTTCCATTTAT+CGG - chr4_4:71140169-71140188 Msa0700250:CDS 30.0%
! TTTTCACAGTACTACTTACT+TGG + chr4_4:71140298-71140317 None:intergenic 30.0%
CATAACATACACTTCTTCAA+AGG + chr4_4:71140441-71140460 None:intergenic 30.0%
AACAACATGCTAAGTTAAGT+TGG + chr4_4:71140468-71140487 None:intergenic 30.0%
! TTTTGTTGCATGGATTTGAT+AGG - chr4_4:71140486-71140505 Msa0700250:CDS 30.0%
! TGATTTTCTTTCCTGTTCTT+GGG + chr4_4:71140593-71140612 None:intergenic 30.0%
TAACAAGTTCCTCTTTATCA+GGG + chr4_4:71140660-71140679 None:intergenic 30.0%
AGAAAAAACATGAACTCTAC+CGG + chr4_4:71140752-71140771 None:intergenic 30.0%
!!! TGGTGCCATTTTGAATTTTT+AGG - chr4_4:71140785-71140804 Msa0700250:intron 30.0%
!!! AGTGCTCTAAATGTGTTTTT+TGG - chr4_4:71140835-71140854 Msa0700250:intron 30.0%
AGGGATAATAGAAAATCTCT+TGG - chr4_4:71141106-71141125 Msa0700250:CDS 30.0%
GATAATAGAAAATCTCTTGG+TGG - chr4_4:71141109-71141128 Msa0700250:CDS 30.0%
!! AACATGTTTGGTTTCACTTT+TGG + chr4_4:71141472-71141491 None:intergenic 30.0%
! AAACATGTTAAAAAGGCATG+CGG - chr4_4:71141483-71141502 Msa0700250:CDS 30.0%
AAACTAGATCCAACTATCTA+TGG - chr4_4:71141816-71141835 Msa0700250:CDS 30.0%
!!! CAATTACTTTTTACACTGAC+AGG - chr4_4:71141983-71142002 Msa0700250:CDS 30.0%
GCTCGACAAAGTTTAATAAA+TGG - chr4_4:71142562-71142581 Msa0700250:CDS 30.0%
CGACAAAGTTTAATAAATGG+AGG - chr4_4:71142565-71142584 Msa0700250:CDS 30.0%
CAAAGTTTAATAAATGGAGG+GGG - chr4_4:71142568-71142587 Msa0700250:CDS 30.0%
AACATTGCTTGATATCTCTT+TGG - chr4_4:71142728-71142747 Msa0700250:five_prime_UTR 30.0%
! TTTGAAACGGTTCCTATAAA+AGG - chr4_4:71143009-71143028 Msa0700250:five_prime_UTR 30.0%
CAAGGAAAAATATCAAGATG+TGG - chr4_4:71143035-71143054 Msa0700250:five_prime_UTR 30.0%
TAAGTTCAACCTTTGTTCAT+AGG - chr4_4:71143072-71143091 Msa0700250:five_prime_UTR 30.0%
AGATTCTACCCATTCTTTAA+TGG + chr4_4:71143251-71143270 None:intergenic 30.0%
CGATGCAATTGAATTTGATT+CGG + chr4_4:71143293-71143312 None:intergenic 30.0%
CGAATCAAATTCAATTGCAT+CGG - chr4_4:71143291-71143310 Msa0700250:intron 30.0%
TTGTCGTAAGTATGAAAGAT+AGG + chr4_4:71143414-71143433 None:intergenic 30.0%
TCATACTTACGACAATCATA+TGG - chr4_4:71143419-71143438 Msa0700250:five_prime_UTR 30.0%
CATACTTACGACAATCATAT+GGG - chr4_4:71143420-71143439 Msa0700250:five_prime_UTR 30.0%
CAACATGCTGCTATAAATTT+CGG - chr4_4:71143454-71143473 Msa0700250:five_prime_UTR 30.0%
AACATGCTGCTATAAATTTC+GGG - chr4_4:71143455-71143474 Msa0700250:five_prime_UTR 30.0%
GATGATAGGAAAAAAAGTTG+AGG + chr4_4:71143580-71143599 None:intergenic 30.0%
TGACTCATTTGCATAATCAT+TGG - chr4_4:71143689-71143708 Msa0700250:five_prime_UTR 30.0%
TAATCATTGGATCAATGATC+AGG - chr4_4:71143702-71143721 Msa0700250:five_prime_UTR 30.0%
TAAATTCTCTACTAGACTTG+AGG - chr4_4:71143744-71143763 Msa0700250:five_prime_UTR 30.0%
AAAGGAAGCAAAAGTTCATA+AGG + chr4_4:71143841-71143860 None:intergenic 30.0%
CGATCATATAGATATACTGT+TGG + chr4_4:71143896-71143915 None:intergenic 30.0%
!! GATCTGATACACTATTTTAG+TGG - chr4_4:71143974-71143993 Msa0700250:five_prime_UTR 30.0%
ATTGATCAATTCGTTTATGC+TGG - chr4_4:71144062-71144081 Msa0700250:five_prime_UTR 30.0%
CTTGTGCAAAATATACATGA+AGG + chr4_4:71144093-71144112 None:intergenic 30.0%
! TTGAGAATAATAGCCTTACA+AGG - chr4_4:71144137-71144156 Msa0700250:five_prime_UTR 30.0%
! TGAGAATAATAGCCTTACAA+GGG - chr4_4:71144138-71144157 Msa0700250:five_prime_UTR 30.0%
! TTTTCTCTATATCCCTTGTA+AGG + chr4_4:71144153-71144172 None:intergenic 30.0%
AAAAGGAATTGTATCTCCAA+GGG + chr4_4:71144244-71144263 None:intergenic 30.0%
TAAAAGGAATTGTATCTCCA+AGG + chr4_4:71144245-71144264 None:intergenic 30.0%
TATCTAACAAACGAGATATG+TGG + chr4_4:71144391-71144410 None:intergenic 30.0%
TGATCAGAATCTAAATGCAG+CGG + chr4_4:71139259-71139278 None:intergenic 35.0%
! GATCAGTGTGTTCAGTTTTT+AGG - chr4_4:71139309-71139328 Msa0700250:three_prime_UTR 35.0%
AGGTGAGAAAAACACAAGAA+GGG + chr4_4:71139370-71139389 None:intergenic 35.0%
AAGGTGAGAAAAACACAAGA+AGG + chr4_4:71139371-71139390 None:intergenic 35.0%
!! GTTGCTCTTTTTGAGAATTG+TGG + chr4_4:71139566-71139585 None:intergenic 35.0%
ATTCTCAAAAAGAGCAACAC+AGG - chr4_4:71139568-71139587 Msa0700250:three_prime_UTR 35.0%
! ATAGTGGTCTTACTTCTTAG+TGG - chr4_4:71139720-71139739 Msa0700250:three_prime_UTR 35.0%
! TAGTGGTCTTACTTCTTAGT+GGG - chr4_4:71139721-71139740 Msa0700250:three_prime_UTR 35.0%
CACCAACAAATTAATCCAAG+TGG - chr4_4:71139770-71139789 Msa0700250:exon 35.0%
!! ACCCACTTGGATTAATTTGT+TGG + chr4_4:71139775-71139794 None:intergenic 35.0%
AATTAATCCAAGTGGGTAAC+TGG - chr4_4:71139778-71139797 Msa0700250:CDS 35.0%
GTAGATTCTACTCTCTCAAT+GGG + chr4_4:71139839-71139858 None:intergenic 35.0%
AGTAGATTCTACTCTCTCAA+TGG + chr4_4:71139840-71139859 None:intergenic 35.0%
ATGTTATAGGTAGTTAGCAG+CGG + chr4_4:71139901-71139920 None:intergenic 35.0%
! TATGGAATGTTTGATGGCTT+CGG + chr4_4:71140071-71140090 None:intergenic 35.0%
CATTACCAATCTTCGTTCAA+AGG - chr4_4:71140154-71140173 Msa0700250:CDS 35.0%
GTGTTAGCTGGAAAGAAAAT+GGG + chr4_4:71140224-71140243 None:intergenic 35.0%
TGTGTTAGCTGGAAAGAAAA+TGG + chr4_4:71140225-71140244 None:intergenic 35.0%
! TTTTCTTTCCAGCTAACACA+TGG - chr4_4:71140225-71140244 Msa0700250:CDS 35.0%
! CTTGTTTGTTAGTATACACG+TGG + chr4_4:71140400-71140419 None:intergenic 35.0%
!!! TAGCATGTTGTTTTGTTGCA+TGG - chr4_4:71140476-71140495 Msa0700250:CDS 35.0%
! GTGATTTTCTTTCCTGTTCT+TGG + chr4_4:71140594-71140613 None:intergenic 35.0%
CTAACAAGTTCCTCTTTATC+AGG + chr4_4:71140661-71140680 None:intergenic 35.0%
TCTTCAAAAGTTTCATCTCG+CGG + chr4_4:71140921-71140940 None:intergenic 35.0%
! CATTCCTTTCAAGTGTTTCT+CGG - chr4_4:71141031-71141050 Msa0700250:CDS 35.0%
TTGGGAGATGAAGAGAATAA+AGG - chr4_4:71141086-71141105 Msa0700250:CDS 35.0%
TGGGAGATGAAGAGAATAAA+GGG - chr4_4:71141087-71141106 Msa0700250:CDS 35.0%
! GCATACCTTTTACAATAGCT+GGG + chr4_4:71141190-71141209 None:intergenic 35.0%
! AGCATACCTTTTACAATAGC+TGG + chr4_4:71141191-71141210 None:intergenic 35.0%
! GCATGCCTTTTTAACATGTT+TGG + chr4_4:71141484-71141503 None:intergenic 35.0%
ATCTCCTGTAACAATGCAAA+AGG + chr4_4:71141619-71141638 None:intergenic 35.0%
! TTACAGGAGATAGATTTGCT+TGG - chr4_4:71141628-71141647 Msa0700250:CDS 35.0%
TACTCATGTAACTGCCTAAT+TGG + chr4_4:71141745-71141764 None:intergenic 35.0%
CATGAGTATCCAACTATTGA+AGG - chr4_4:71141757-71141776 Msa0700250:intron 35.0%
CCAAAAACACCTTCAATAGT+TGG + chr4_4:71141769-71141788 None:intergenic 35.0%
!!! CCAACTATTGAAGGTGTTTT+TGG - chr4_4:71141766-71141785 Msa0700250:intron 35.0%
!! TTGTTATTGCTGATTCTGGA+GGG + chr4_4:71141842-71141861 None:intergenic 35.0%
!! TTTGTTATTGCTGATTCTGG+AGG + chr4_4:71141843-71141862 None:intergenic 35.0%
TCCAGAATCAGCAATAACAA+AGG - chr4_4:71141842-71141861 Msa0700250:CDS 35.0%
!! TCCTTTGTTATTGCTGATTC+TGG + chr4_4:71141846-71141865 None:intergenic 35.0%
AGCAATAACAAAGGAACTAC+TGG - chr4_4:71141851-71141870 Msa0700250:CDS 35.0%
GAGTTCATCTTCTTGATGAA+TGG + chr4_4:71142059-71142078 None:intergenic 35.0%
TTGTAATGAAGAGAATCGTC+CGG + chr4_4:71142109-71142128 None:intergenic 35.0%
GACGATTCTCTTCATTACAA+AGG - chr4_4:71142109-71142128 Msa0700250:intron 35.0%
ATTCTCTTCATTACAAAGGC+CGG - chr4_4:71142113-71142132 Msa0700250:intron 35.0%
AGAGAAAGCTCAATAGCTAT+AGG + chr4_4:71142149-71142168 None:intergenic 35.0%
AGTGCCAATATGTAATATGC+AGG - chr4_4:71142416-71142435 Msa0700250:intron 35.0%
GGATGTAGCAACTTGTAAAT+AGG + chr4_4:71142508-71142527 None:intergenic 35.0%
!! ATTGAAGCATCTTTTAGTCC+TGG - chr4_4:71142595-71142614 Msa0700250:CDS 35.0%
ATTTGATATGGAGTCTCTTC+CGG - chr4_4:71142666-71142685 Msa0700250:exon 35.0%
ACTACCTCCATTCATGAATA+TGG - chr4_4:71142774-71142793 Msa0700250:five_prime_UTR 35.0%
GATACCATATTCATGAATGG+AGG + chr4_4:71142781-71142800 None:intergenic 35.0%
! GTTTTCCAAGTTTACACTTC+AGG - chr4_4:71142875-71142894 Msa0700250:intron 35.0%
TATCTCCTGAAGTGTAAACT+TGG + chr4_4:71142883-71142902 None:intergenic 35.0%
! TTTTCCTTGCCACCTTTTAT+AGG + chr4_4:71143024-71143043 None:intergenic 35.0%
AGCAATCTGTTAATACTCTG+TGG - chr4_4:71143116-71143135 Msa0700250:five_prime_UTR 35.0%
! ATCACAAGTTTTACACCACA+GGG + chr4_4:71143184-71143203 None:intergenic 35.0%
! AATCACAAGTTTTACACCAC+AGG + chr4_4:71143185-71143204 None:intergenic 35.0%
TGGAGTGAAATCAAGTGTAA+GGG - chr4_4:71143334-71143353 Msa0700250:intron 35.0%
CTGACAAAAGAAATGAACCT+TGG - chr4_4:71143362-71143381 Msa0700250:intron 35.0%
ACAAAAGAAATGAACCTTGG+TGG - chr4_4:71143365-71143384 Msa0700250:intron 35.0%
! TCCTCTTTGGTATCTAGTTT+AGG + chr4_4:71143391-71143410 None:intergenic 35.0%
TATGAAAGATAGGTCCTCTT+TGG + chr4_4:71143404-71143423 None:intergenic 35.0%
! ATAAGTTTTCTCATGAGGGT+AGG + chr4_4:71143514-71143533 None:intergenic 35.0%
! AGGGATAAGTTTTCTCATGA+GGG + chr4_4:71143518-71143537 None:intergenic 35.0%
ACTTCAAGCTACCAAAGTAA+TGG - chr4_4:71143612-71143631 Msa0700250:five_prime_UTR 35.0%
!! CCAGTTCTACTTTTCAAACT+TGG + chr4_4:71143805-71143824 None:intergenic 35.0%
CCAAGTTTGAAAAGTAGAAC+TGG - chr4_4:71143802-71143821 Msa0700250:five_prime_UTR 35.0%
CATGACTTATATGCGACATA+TGG + chr4_4:71144201-71144220 None:intergenic 35.0%
AAAGGAATTGTATCTCCAAG+GGG + chr4_4:71144243-71144262 None:intergenic 35.0%
TGAGAAAAACACAAGAAGGG+GGG + chr4_4:71139367-71139386 None:intergenic 40.0%
GTGAGAAAAACACAAGAAGG+GGG + chr4_4:71139368-71139387 None:intergenic 40.0%
GGTGAGAAAAACACAAGAAG+GGG + chr4_4:71139369-71139388 None:intergenic 40.0%
! AGTGGTCTTACTTCTTAGTG+GGG - chr4_4:71139722-71139741 Msa0700250:three_prime_UTR 40.0%
! AAAAGCGTGGAATCTTACGT+AGG - chr4_4:71140035-71140054 Msa0700250:CDS 40.0%
! GCAGAGTATTCCACAACATA+TGG + chr4_4:71140089-71140108 None:intergenic 40.0%
! TGGTAATGAGAATAGCAGCT+GGG + chr4_4:71140142-71140161 None:intergenic 40.0%
!! TTGGTAATGAGAATAGCAGC+TGG + chr4_4:71140143-71140162 None:intergenic 40.0%
GAACTCCTTTGAACGAAGAT+TGG + chr4_4:71140162-71140181 None:intergenic 40.0%
GGAGGATGATTTCCGATAAA+TGG + chr4_4:71140184-71140203 None:intergenic 40.0%
TTATCGGAAATCATCCTCCA+CGG - chr4_4:71140185-71140204 Msa0700250:CDS 40.0%
GAATGAATCCATGTGTTAGC+TGG + chr4_4:71140236-71140255 None:intergenic 40.0%
CACCTGGTATCAAAGATCTT+CGG - chr4_4:71140530-71140549 Msa0700250:intron 40.0%
!! TGAGGATTTGCTAAGCACAA+GGG - chr4_4:71140555-71140574 Msa0700250:intron 40.0%
TATGCTCCCTACAATGAGTT+AGG - chr4_4:71140631-71140650 Msa0700250:intron 40.0%
!! GAACTTGTTAGACCAGTCAT+TGG - chr4_4:71140670-71140689 Msa0700250:intron 40.0%
TCAATTCTAGTCTCACATCG+TGG + chr4_4:71140876-71140895 None:intergenic 40.0%
CAAGTTTGGGTATGAGATTG+TGG + chr4_4:71140989-71141008 None:intergenic 40.0%
AATGTCTGAATTCGCCATAG+TGG + chr4_4:71141015-71141034 None:intergenic 40.0%
ATCTCCGAGAAACACTTGAA+AGG + chr4_4:71141038-71141057 None:intergenic 40.0%
ATGAAACAGGTCTTCAGTTC+TGG - chr4_4:71141140-71141159 Msa0700250:CDS 40.0%
GACATCCCAGCTATTGTAAA+AGG - chr4_4:71141182-71141201 Msa0700250:CDS 40.0%
!! ACTGGTTTGTTGAATGAACG+TGG + chr4_4:71141596-71141615 None:intergenic 40.0%
CTGTAACAATGCAAAAGGAC+TGG + chr4_4:71141614-71141633 None:intergenic 40.0%
! CAGTCCTTTTGCATTGTTAC+AGG - chr4_4:71141612-71141631 Msa0700250:CDS 40.0%
! GAGATAGATTTGCTTGGTTG+CGG - chr4_4:71141634-71141653 Msa0700250:CDS 40.0%
! AGATAGATTTGCTTGGTTGC+GGG - chr4_4:71141635-71141654 Msa0700250:CDS 40.0%
!!! AAGGTGTTTTTGGTCTTTGC+AGG - chr4_4:71141776-71141795 Msa0700250:intron 40.0%
!! TAGTTGGATCTAGTTTGCTG+CGG + chr4_4:71141812-71141831 None:intergenic 40.0%
! AGAACTTGGTGGAATAAGCT+TGG - chr4_4:71141878-71141897 Msa0700250:intron 40.0%
TGGTGGAATAAGCTTGGAAA+AGG - chr4_4:71141884-71141903 Msa0700250:intron 40.0%
! CTTTTTACACTGACAGGCTA+TGG - chr4_4:71141989-71142008 Msa0700250:CDS 40.0%
! TGAATGGCAAAAGCATGTCA+TGG + chr4_4:71142043-71142062 None:intergenic 40.0%
TGTAATGAAGAGAATCGTCC+GGG + chr4_4:71142108-71142127 None:intergenic 40.0%
CATGTTAGCTCAAATGATGC+TGG - chr4_4:71142260-71142279 Msa0700250:intron 40.0%
TAGTCCTGGAAAATATGCCT+TGG - chr4_4:71142609-71142628 Msa0700250:CDS 40.0%
GAGCATGTGGAGATTTGATA+TGG - chr4_4:71142654-71142673 Msa0700250:exon 40.0%
! TAACACAATTAGGGGCATGT+TGG - chr4_4:71142959-71142978 Msa0700250:five_prime_UTR 40.0%
GAAACGGTTCCTATAAAAGG+TGG - chr4_4:71143012-71143031 Msa0700250:five_prime_UTR 40.0%
TCTGGTCTGCCATTAAAGAA+TGG - chr4_4:71143239-71143258 Msa0700250:intron 40.0%
CTGGTCTGCCATTAAAGAAT+GGG - chr4_4:71143240-71143259 Msa0700250:intron 40.0%
GTGGAGTGAAATCAAGTGTA+AGG - chr4_4:71143333-71143352 Msa0700250:intron 40.0%
GCCTAAACTAGATACCAAAG+AGG - chr4_4:71143387-71143406 Msa0700250:intron 40.0%
! ACAATCATATGGGTTGCTTC+AGG - chr4_4:71143430-71143449 Msa0700250:five_prime_UTR 40.0%
! AATTTCGGGCAATACCCTTT+TGG - chr4_4:71143469-71143488 Msa0700250:five_prime_UTR 40.0%
TAGGCACATATCCTCCAAAA+GGG + chr4_4:71143486-71143505 None:intergenic 40.0%
TTAGGCACATATCCTCCAAA+AGG + chr4_4:71143487-71143506 None:intergenic 40.0%
! GAGGGATAAGTTTTCTCATG+AGG + chr4_4:71143519-71143538 None:intergenic 40.0%
GTTGAGTAGGCAATGATGAT+AGG + chr4_4:71143594-71143613 None:intergenic 40.0%
! TTGGTAGCTTGAAGTTGAGT+AGG + chr4_4:71143607-71143626 None:intergenic 40.0%
TACCAAAGTAATGGCTGTTC+AGG - chr4_4:71143621-71143640 Msa0700250:five_prime_UTR 40.0%
TACTAGACTTGAGGAGATAG+AGG - chr4_4:71143753-71143772 Msa0700250:five_prime_UTR 40.0%
TTGAAAAGTAGAACTGGTGC+AGG - chr4_4:71143808-71143827 Msa0700250:five_prime_UTR 40.0%
GGAAGCAAAAGTTCATAAGG+AGG + chr4_4:71143838-71143857 None:intergenic 40.0%
! GAACTTTTGCTTCCTTTGTC+AGG - chr4_4:71143844-71143863 Msa0700250:five_prime_UTR 40.0%
TCGATCAATTTCGATTGCCT+TGG - chr4_4:71143913-71143932 Msa0700250:five_prime_UTR 40.0%
TTGCACAAGATCTATGGTCA+AGG - chr4_4:71144104-71144123 Msa0700250:five_prime_UTR 40.0%
ACAAGATCTATGGTCAAGGT+AGG - chr4_4:71144108-71144127 Msa0700250:five_prime_UTR 40.0%
CAAGATCTATGGTCAAGGTA+GGG - chr4_4:71144109-71144128 Msa0700250:five_prime_UTR 40.0%
AAGATCTATGGTCAAGGTAG+GGG - chr4_4:71144110-71144129 Msa0700250:five_prime_UTR 40.0%
ATCCAAGTGGGTAACTGGTA+AGG - chr4_4:71139783-71139802 Msa0700250:CDS 45.0%
TCCAAGTGGGTAACTGGTAA+GGG - chr4_4:71139784-71139803 Msa0700250:CDS 45.0%
TGGAATCTTACGTAGGAGGT+TGG - chr4_4:71140042-71140061 Msa0700250:CDS 45.0%
TTCACAGTGCCAAGTGACTT+TGG - chr4_4:71140113-71140132 Msa0700250:CDS 45.0%
GGTAATGAGAATAGCAGCTG+GGG + chr4_4:71140141-71140160 None:intergenic 45.0%
! CACTTCTTCAAAGGTGTGTG+AGG + chr4_4:71140432-71140451 None:intergenic 45.0%
TTACCATCACAAACACCACC+TGG - chr4_4:71140514-71140533 Msa0700250:CDS 45.0%
ATACCAGGTGGTGTTTGTGA+TGG + chr4_4:71140520-71140539 None:intergenic 45.0%
CGAAGATCTTTGATACCAGG+TGG + chr4_4:71140532-71140551 None:intergenic 45.0%
TATCAAAGATCTTCGGCGTG+AGG - chr4_4:71140537-71140556 Msa0700250:intron 45.0%
!! GTGAGGATTTGCTAAGCACA+AGG - chr4_4:71140554-71140573 Msa0700250:intron 45.0%
!! GAGGATTTGCTAAGCACAAG+GGG - chr4_4:71140556-71140575 Msa0700250:intron 45.0%
GGGTTGCCTAACTCATTGTA+GGG + chr4_4:71140640-71140659 None:intergenic 45.0%
AGGGTTGCCTAACTCATTGT+AGG + chr4_4:71140641-71140660 None:intergenic 45.0%
GTTAGGCAACCCTGATAAAG+AGG - chr4_4:71140648-71140667 Msa0700250:intron 45.0%
CTCTCATGATCTCCAATGAC+TGG + chr4_4:71140685-71140704 None:intergenic 45.0%
! AAACAGGATGCATTTGCTGC+TGG - chr4_4:71140945-71140964 Msa0700250:intron 45.0%
GGTGGGAAAAGTGATGAAAC+AGG - chr4_4:71141127-71141146 Msa0700250:CDS 45.0%
GTATGCTACCTCTACTGCTT+AGG - chr4_4:71141204-71141223 Msa0700250:CDS 45.0%
TGTGTTTGCCTAAGCAGTAG+AGG + chr4_4:71141215-71141234 None:intergenic 45.0%
! TACTGGATTGACTCCAGCTA+AGG + chr4_4:71141682-71141701 None:intergenic 45.0%
GAACTACTGGAGCAAGAACT+TGG - chr4_4:71141864-71141883 Msa0700250:CDS 45.0%
TTTACACTGACAGGCTATGG+AGG - chr4_4:71141992-71142011 Msa0700250:CDS 45.0%
GTTAAGGACTCATGCATGCA+TGG - chr4_4:71142438-71142457 Msa0700250:intron 45.0%
TCCTCATACGCGCTATACAA+TGG - chr4_4:71142525-71142544 Msa0700250:CDS 45.0%
TCCATTGTATAGCGCGTATG+AGG + chr4_4:71142529-71142548 None:intergenic 45.0%
! AGCTCCAAGGCATATTTTCC+AGG + chr4_4:71142616-71142635 None:intergenic 45.0%
CTCTTCCGGCAGATCTTATT+CGG - chr4_4:71142680-71142699 Msa0700250:five_prime_UTR 45.0%
TACCTCCGAATAAGATCTGC+CGG + chr4_4:71142688-71142707 None:intergenic 45.0%
GGTTCCTATAAAAGGTGGCA+AGG - chr4_4:71143017-71143036 Msa0700250:five_prime_UTR 45.0%
TCTGTGGAATGTGCTTTCCA+GGG - chr4_4:71143132-71143151 Msa0700250:five_prime_UTR 45.0%
!! TTACACCACAGGGCATTGAA+GGG + chr4_4:71143174-71143193 None:intergenic 45.0%
!! TTTACACCACAGGGCATTGA+AGG + chr4_4:71143175-71143194 None:intergenic 45.0%
GAAGTCCATCTGCAGCATAA+GGG + chr4_4:71143216-71143235 None:intergenic 45.0%
AGAAGTCCATCTGCAGCATA+AGG + chr4_4:71143217-71143236 None:intergenic 45.0%
! CTGCAGATGGACTTCTAATC+TGG - chr4_4:71143221-71143240 Msa0700250:intron 45.0%
TGATTTCACTCCACCACTCT+TGG + chr4_4:71143327-71143346 None:intergenic 45.0%
! GTATCTAGTTTAGGCCACCA+AGG + chr4_4:71143382-71143401 None:intergenic 45.0%
! GTTTTCTCATGAGGGTAGGA+CGG + chr4_4:71143510-71143529 None:intergenic 45.0%
GTCCTGAACAGCCATTACTT+TGG + chr4_4:71143626-71143645 None:intergenic 45.0%
!! TTCCCCTGACGAAGAGTATT+TGG - chr4_4:71143660-71143679 Msa0700250:five_prime_UTR 45.0%
!! TCCCCTGACGAAGAGTATTT+GGG - chr4_4:71143661-71143680 Msa0700250:five_prime_UTR 45.0%
ACCCAAATACTCTTCGTCAG+GGG + chr4_4:71143665-71143684 None:intergenic 45.0%
GACCCAAATACTCTTCGTCA+GGG + chr4_4:71143666-71143685 None:intergenic 45.0%
TGACCCAAATACTCTTCGTC+AGG + chr4_4:71143667-71143686 None:intergenic 45.0%
GAATTGTATCTCCAAGGGGT+TGG + chr4_4:71144239-71144258 None:intergenic 45.0%
TCCCTTACCAGTTACCCACT+TGG + chr4_4:71139788-71139807 None:intergenic 50.0%
GCGGTTAATATCTCCGTCGT+CGG + chr4_4:71139882-71139901 None:intergenic 50.0%
AGCGTGGAATCTTACGTAGG+AGG - chr4_4:71140038-71140057 Msa0700250:CDS 50.0%
CGCCGAAGATCTTTGATACC+AGG + chr4_4:71140535-71140554 None:intergenic 50.0%
TTGCTAAGCACAAGGGGAAG+CGG - chr4_4:71140562-71140581 Msa0700250:intron 50.0%
GTTCTACAGCGACGAGGATA+AGG + chr4_4:71140709-71140728 None:intergenic 50.0%
TATCCTCGTCGCTGTAGAAC+CGG - chr4_4:71140709-71140728 Msa0700250:intron 50.0%
CATCTCGCGGCACATAAACA+GGG + chr4_4:71140908-71140927 None:intergenic 50.0%
TCATCTCGCGGCACATAAAC+AGG + chr4_4:71140909-71140928 None:intergenic 50.0%
ACCCAAACTTGCAGCCACTA+TGG - chr4_4:71140998-71141017 Msa0700250:CDS 50.0%
GCCATAGTGGCTGCAAGTTT+GGG + chr4_4:71141002-71141021 None:intergenic 50.0%
!! AGGTCTTCAGTTCTGGAGAG+CGG - chr4_4:71141147-71141166 Msa0700250:CDS 50.0%
TGCGGGACAACGAATTTGCA+AGG - chr4_4:71141652-71141671 Msa0700250:CDS 50.0%
TTTGCAAGGCAAGCCTTAGC+TGG - chr4_4:71141666-71141685 Msa0700250:intron 50.0%
!! GGATCTAGTTTGCTGCGGAT+TGG + chr4_4:71141807-71141826 None:intergenic 50.0%
TCTGGAGGGCCATAGATAGT+TGG + chr4_4:71141828-71141847 None:intergenic 50.0%
CTACTGGAGCAAGAACTTGG+TGG - chr4_4:71141867-71141886 Msa0700250:CDS 50.0%
AGATGAACTCTTTGCCCGAG+AGG - chr4_4:71142069-71142088 Msa0700250:intron 50.0%
GAGGCATAAGCTTTCCTCTC+GGG + chr4_4:71142086-71142105 None:intergenic 50.0%
! GGAGGCATAAGCTTTCCTCT+CGG + chr4_4:71142087-71142106 None:intergenic 50.0%
AGAGGAAAGCTTATGCCTCC+CGG - chr4_4:71142087-71142106 Msa0700250:intron 50.0%
AATGAAGAGAATCGTCCGGG+AGG + chr4_4:71142105-71142124 None:intergenic 50.0%
AGCTATAGGACGCAGAACAC+CGG + chr4_4:71142135-71142154 None:intergenic 50.0%
TGCGGCAAAGTAAGTGTCTG+AGG + chr4_4:71142173-71142192 None:intergenic 50.0%
ATGCCACAGCACACTGGATT+TGG - chr4_4:71142222-71142241 Msa0700250:intron 50.0%
CTTCCAAATCCAGTGTGCTG+TGG + chr4_4:71142228-71142247 None:intergenic 50.0%
AGCTGCTGAACTAAGCTCCA+AGG + chr4_4:71142629-71142648 None:intergenic 50.0%
! CAGCAGCTTACAAGAGCATG+TGG - chr4_4:71142641-71142660 Msa0700250:CDS 50.0%
TTCCGGCAGATCTTATTCGG+AGG - chr4_4:71142683-71142702 Msa0700250:five_prime_UTR 50.0%
CTCTGTGGAATGTGCTTTCC+AGG - chr4_4:71143131-71143150 Msa0700250:five_prime_UTR 50.0%
CTGTGGAATGTGCTTTCCAG+GGG - chr4_4:71143133-71143152 Msa0700250:five_prime_UTR 50.0%
GACTACCCTTATGCTGCAGA+TGG - chr4_4:71143208-71143227 Msa0700250:intron 50.0%
ATGTTGAGCTCCAAGAGTGG+TGG - chr4_4:71143314-71143333 Msa0700250:intron 50.0%
! TTCGGGCAATACCCTTTTGG+AGG - chr4_4:71143472-71143491 Msa0700250:five_prime_UTR 50.0%
TTGCTTCCTTTGTCAGGACC+CGG - chr4_4:71143850-71143869 Msa0700250:five_prime_UTR 50.0%
GCTGGGGATCCAAAGTCACT+TGG + chr4_4:71140125-71140144 None:intergenic 55.0%
ATCATCCTCCACGGCTTCAC+TGG - chr4_4:71140194-71140213 Msa0700250:CDS 55.0%
TGAACTCTACCGGAGCGAGT+AGG + chr4_4:71140742-71140761 None:intergenic 55.0%
CGCCATAGTGGCTGCAAGTT+TGG + chr4_4:71141003-71141022 None:intergenic 55.0%
TCCAGTGTGCTGTGGCATCA+TGG + chr4_4:71142220-71142239 None:intergenic 55.0%
GAATGTGCTTTCCAGGGGCA+TGG - chr4_4:71143138-71143157 Msa0700250:five_prime_UTR 55.0%
GAAGACCCTTCAATGCCCTG+TGG - chr4_4:71143166-71143185 Msa0700250:intron 55.0%
CGGATGTTGAGCTCCAAGAG+TGG - chr4_4:71143311-71143330 Msa0700250:intron 55.0%
CTCATGAGGGTAGGACGGTT+AGG + chr4_4:71143505-71143524 None:intergenic 55.0%
!! GGGGTTGGCTTAGTGAAGCA+TGG + chr4_4:71144224-71144243 None:intergenic 55.0%
GCTTCACTAAGCCAACCCCT+TGG - chr4_4:71144225-71144244 Msa0700250:five_prime_UTR 55.0%
ATCCTCCACGGCTTCACTGG+AGG - chr4_4:71140197-71140216 Msa0700250:CDS 60.0%
!! AAGCGGTGCTGCCCAAGAAC+AGG - chr4_4:71140579-71140598 Msa0700250:intron 60.0%
CTTCCGGTTCTACAGCGACG+AGG + chr4_4:71140715-71140734 None:intergenic 60.0%
GGAGCGAGTAGGAGGTCTTC+CGG + chr4_4:71140731-71140750 None:intergenic 60.0%
GGAAGACCTCCTACTCGCTC+CGG - chr4_4:71140730-71140749 Msa0700250:intron 60.0%
ACTCTACCGGAGCGAGTAGG+AGG + chr4_4:71140739-71140758 None:intergenic 60.0%
CGCGGCACATAAACAGGGTG+TGG + chr4_4:71140903-71140922 None:intergenic 60.0%
GCCATGATGCCACAGCACAC+TGG - chr4_4:71142216-71142235 Msa0700250:intron 60.0%
GTCTTCTACTGCCATGCCCC+TGG + chr4_4:71143152-71143171 None:intergenic 60.0%
GTTGCTCCGGGTCCTGACAA+AGG + chr4_4:71143859-71143878 None:intergenic 60.0%
TTGTCAGGACCCGGAGCAAC+TGG - chr4_4:71143859-71143878 Msa0700250:five_prime_UTR 60.0%
ACTCCACGACCAGTTGCTCC+GGG + chr4_4:71143871-71143890 None:intergenic 60.0%
GACTCCACGACCAGTTGCTC+CGG + chr4_4:71143872-71143891 None:intergenic 60.0%
GCCTCACATGCTGCCGACGA+CGG - chr4_4:71139866-71139885 Msa0700250:CDS 65.0%
TCCGTCGTCGGCAGCATGTG+AGG + chr4_4:71139870-71139889 None:intergenic 65.0%
GTCCTCCAGTGAAGCCGTGG+AGG + chr4_4:71140202-71140221 None:intergenic 65.0%
TGGGTCCTCCAGTGAAGCCG+TGG + chr4_4:71140205-71140224 None:intergenic 65.0%
GGACCCGGAGCAACTGGTCG+TGG - chr4_4:71143865-71143884 Msa0700250:five_prime_UTR 70.0%
Chromosome Type Strat End Strand Name
chr4_4 gene 71139238 71144451 71139238 ID=Msa0700250;Name=Msa0700250
chr4_4 mRNA 71139238 71144451 71139238 ID=Msa0700250-mRNA-1;Parent=Msa0700250;Name=Msa0700250-mRNA-1;_AED=0.04;_eAED=0.04;_QI=1451|1|1|1|1|1|8|539|569
chr4_4 exon 71139238 71140536 71139238 ID=Msa0700250-mRNA-1:exon:21617;Parent=Msa0700250-mRNA-1
chr4_4 exon 71140985 71141251 71140985 ID=Msa0700250-mRNA-1:exon:21616;Parent=Msa0700250-mRNA-1
chr4_4 exon 71141383 71141684 71141383 ID=Msa0700250-mRNA-1:exon:21615;Parent=Msa0700250-mRNA-1
chr4_4 exon 71141784 71141891 71141784 ID=Msa0700250-mRNA-1:exon:21614;Parent=Msa0700250-mRNA-1
chr4_4 exon 71141970 71142055 71141970 ID=Msa0700250-mRNA-1:exon:21613;Parent=Msa0700250-mRNA-1
chr4_4 exon 71142486 71142818 71142486 ID=Msa0700250-mRNA-1:exon:21612;Parent=Msa0700250-mRNA-1
chr4_4 exon 71142938 71143181 71142938 ID=Msa0700250-mRNA-1:exon:21611;Parent=Msa0700250-mRNA-1
chr4_4 exon 71143391 71144451 71143391 ID=Msa0700250-mRNA-1:exon:21610;Parent=Msa0700250-mRNA-1
chr4_4 five_prime_UTR 71143391 71144451 71143391 ID=Msa0700250-mRNA-1:five_prime_utr;Parent=Msa0700250-mRNA-1
chr4_4 five_prime_UTR 71142938 71143181 71142938 ID=Msa0700250-mRNA-1:five_prime_utr;Parent=Msa0700250-mRNA-1
chr4_4 five_prime_UTR 71142673 71142818 71142673 ID=Msa0700250-mRNA-1:five_prime_utr;Parent=Msa0700250-mRNA-1
chr4_4 CDS 71142486 71142672 71142486 ID=Msa0700250-mRNA-1:cds;Parent=Msa0700250-mRNA-1
chr4_4 CDS 71141970 71142055 71141970 ID=Msa0700250-mRNA-1:cds;Parent=Msa0700250-mRNA-1
chr4_4 CDS 71141784 71141891 71141784 ID=Msa0700250-mRNA-1:cds;Parent=Msa0700250-mRNA-1
chr4_4 CDS 71141383 71141684 71141383 ID=Msa0700250-mRNA-1:cds;Parent=Msa0700250-mRNA-1
chr4_4 CDS 71140985 71141251 71140985 ID=Msa0700250-mRNA-1:cds;Parent=Msa0700250-mRNA-1
chr4_4 CDS 71139777 71140536 71139777 ID=Msa0700250-mRNA-1:cds;Parent=Msa0700250-mRNA-1
chr4_4 three_prime_UTR 71139238 71139776 71139238 ID=Msa0700250-mRNA-1:three_prime_utr;Parent=Msa0700250-mRNA-1
Gene Sequence

>Msa0700250

ATGGCGAATTCAGACATTCCTTTCAAGTGTTTCTCGGAGATTGACAAGCTTTATATTGATGGTGTTAATTTGGGAGATGAAGAGAATAAAGGGATAATAGAAAATCTCTTGGTGGGAAAAGTGATGAAACAGGTCTTCAGTTCTGGAGAGCGGTTGATGAAGTATGACATCCCAGCTATTGTAAAAGGAGATAGATTTGCTTGGTTGCGGGACAACGAATTTGCAAGGCAAGCCTTAGCTGGAGTCAATCCAGTAAATATTGAGCTATTGAAGGAGTTTCCAATCCGCAGCAAACTAGATCCAACTATCTATGGCCCTCCAGAATCAGCAATAACAAAGGAACTACTGGAGCAAGAACTTGGTGGAATAAGCTTGGAAAAGGCTATGGAGGAAAAGAGACTATTTATTATTGATTACCATGACATGCTTTTGCCATTCATCAAGAAGATGAACTCTTTGCCCGAGAGGAAAGCTTATGCCTCCCGGACGATTCTCTTCATTACAAAGGCCGGTGTTCTGCGTCCTATAGCTATTGAGCTTTCTCTTCCTCAGACACTTACTTTGCCGCAAAATAGAAAAGTTTACACACAAGGCCATGATGCCACAGCACACTGGATTTGGAAGTTAGCAAAAGCTCATGTTAGCTCAAATGATGCTGGCATTCATCAACTAGTAAATCATTGGTTAAGGACTCATGCATGCATGGAGCCATATATAATTGCTACTCATAGACAGTTAAGCTCAATGCATCCTATTTACAAGTTGCTACATCCTCATACGCGCTATACAATGGAAATTAATGCACTTGCTCGACAAAGTTTAATAAATGGAGGGGGTATAATTGAAGCATCTTTTAGTCCTGGAAAATATGCCTTGGAGCTTAGTTCAGCAGCTTACAAGAGCATGTGGAGATTTGATATGGAGTCTCTTCCGGCAGATCTTATTCGGAGGGGCATGGCAGTAGAAGACCCTTCAATGCCCTGTGGTGTAAAACTTGTGATTGATGACTACCCTTATGCTGCAGATGGACTTCTAATCTGGTCTGCCATTAAAGAATGGGTAGAATCTTATGTCAAACACTTCTATTCCGAATCAAATTCAATTGCATCGGATGTTGAGCTCCAAGAGTGGTGGAGTGAAATCAAGTGTAAGGGTCACGCTGACAAAAGAAATGAACCTTGGTGGCCTAAACTAGATACCAAAGAGGACCTATCTTTCATACTTACGACAATCATATGGGTTGCTTCAGGTCAACATGCTGCTATAAATTTCGGGCAATACCCTTTTGGAGGATATGTGCCTAACCGTCCTACCCTCATGAGAAAACTTATCCCTCAAGAAAATGATTCTGATTATGAGAAGTTTATTCGAAATCCTCAACTTTTTTTCCTATCATCATTGCCTACTCAACTTCAAGCTACCAAAGTAATGGCTGTTCAGGACACGTTGTCGACTCATTCCCCTGACGAAGAGTATTTGGGTCAAGTGACTCATTTGCATAATCATTGGATCAATGATCAGGAAGTCCTGAAATTGTTTAGTAAATTCTCTACTAGACTTGAGGAGATAGAGGAAATTATAAATGCAAGAAATAAGGATCCAAGTTTGAAAAGTAGAACTGGTGCAGGTGTTCCTCCTTATGAACTTTTGCTTCCTTTGTCAGGACCCGGAGCAACTGGTCGTGGAGTCCCCAACAGTATATCTATATGA
Protein sequence

>Msa0700250

MANSDIPFKCFSEIDKLYIDGVNLGDEENKGIIENLLVGKVMKQVFSSGERLMKYDIPAIVKGDRFAWLRDNEFARQALAGVNPVNIELLKEFPIRSKLDPTIYGPPESAITKELLEQELGGISLEKAMEEKRLFIIDYHDMLLPFIKKMNSLPERKAYASRTILFITKAGVLRPIAIELSLPQTLTLPQNRKVYTQGHDATAHWIWKLAKAHVSSNDAGIHQLVNHWLRTHACMEPYIIATHRQLSSMHPIYKLLHPHTRYTMEINALARQSLINGGGIIEASFSPGKYALELSSAAYKSMWRFDMESLPADLIRRGMAVEDPSMPCGVKLVIDDYPYAADGLLIWSAIKEWVESYVKHFYSESNSIASDVELQEWWSEIKCKGHADKRNEPWWPKLDTKEDLSFILTTIIWVASGQHAAINFGQYPFGGYVPNRPTLMRKLIPQENDSDYEKFIRNPQLFFLSSLPTQLQATKVMAVQDTLSTHSPDEEYLGQVTHLHNHWINDQEVLKLFSKFSTRLEEIEEIINARNKDPSLKSRTGAGVPPYELLLPLSGPGATGRGVPNSISI*