Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0514340 | XP_003601802.1 | 96.767 | 464 | 12 | 1 | 1 | 464 | 1 | 461 | 0.0 | 922 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0514340 | sp|Q4V399|RSGA1_ARATH | 69.606 | 431 | 120 | 5 | 47 | 470 | 1 | 427 | 0.0 | 600 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0514340 | G7JC10 | 96.767 | 464 | 12 | 1 | 1 | 464 | 1 | 461 | 0.0 | 922 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0000610 | Msa0514340 | 0.810108 | 1.357993e-50 | -8.615850e-47 |
| Msa0011920 | Msa0514340 | 0.837091 | 6.378970e-57 | -8.615850e-47 |
| Msa0373370 | Msa0514340 | 0.956225 | 4.866609e-114 | -8.615850e-47 |
| Msa0421930 | Msa0514340 | 0.998173 | 6.337109e-258 | -8.615850e-47 |
| Msa0514340 | Msa0617470 | 0.827987 | 1.154592e-54 | -8.615850e-47 |
| Msa0514340 | Msa0700250 | 0.828213 | 1.018899e-54 | -8.615850e-47 |
| Msa0514340 | Msa1384410 | 0.801826 | 7.497435e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0514340 | MtrunA17_Chr3g0122661 | 96.767 | 464 | 12 | 1 | 1 | 464 | 1 | 461 | 0.0 | 922 |
| Msa0514340 | MtrunA17_Chr3g0122691 | 90.909 | 66 | 6 | 0 | 286 | 351 | 32 | 97 | 5.35e-35 | 126 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0514340 | AT1G67440.2 | 65.164 | 488 | 148 | 9 | 1 | 470 | 1 | 484 | 0.0 | 612 |
| Msa0514340 | AT1G67440.1 | 69.606 | 431 | 120 | 5 | 47 | 470 | 1 | 427 | 0.0 | 600 |
| Msa0514340 | AT1G67460.2 | 58.943 | 246 | 89 | 3 | 28 | 270 | 35 | 271 | 2.07e-91 | 280 |
| Msa0514340 | AT1G67460.1 | 58.943 | 246 | 89 | 3 | 28 | 270 | 35 | 271 | 2.07e-91 | 280 |
Find 163 sgRNAs with CRISPR-Local
Find 259 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCCTTTCGGCTTGTATCTC+TGG | 0.155494 | 3_4:-65018442 | Msa0514340:three_prime_UTR |
| CATTCCTCAAAGCATTTAAA+AGG | 0.170873 | 3_4:+65018513 | None:intergenic |
| GTCTCTCTGCTTCCATTATC+TGG | 0.207671 | 3_4:-65019434 | Msa0514340:CDS |
| TTGCTTGGAGCTTCGTGTTT+AGG | 0.223906 | 3_4:+65021384 | None:intergenic |
| AAGTACGAGGATTGCTTCTA+AGG | 0.236404 | 3_4:+65019665 | None:intergenic |
| GACGATTACGCGCATGAAAT+TGG | 0.238913 | 3_4:+65021239 | None:intergenic |
| TGCTTGGAGCTTCGTGTTTA+GGG | 0.240644 | 3_4:+65021385 | None:intergenic |
| GAGCTTCGTGTTTAGGGTTT+TGG | 0.260240 | 3_4:+65021391 | None:intergenic |
| TCAAATAATATAGTTGGATT+TGG | 0.270741 | 3_4:+65018212 | None:intergenic |
| AATATTTACAATCAGTATAA+TGG | 0.281341 | 3_4:+65018464 | None:intergenic |
| TTCTAGTAGGTTCTGTTGAT+TGG | 0.284638 | 3_4:-65021098 | Msa0514340:CDS |
| GAAGGCTAGGTTTCGTGGTT+GGG | 0.290326 | 3_4:-65019815 | Msa0514340:CDS |
| TTGCCAAGTTAAACGACATT+TGG | 0.294470 | 3_4:+65021674 | None:intergenic |
| GAAGATTCGGATTGAACTAA+TGG | 0.321003 | 3_4:+65018385 | None:intergenic |
| TTGGTTGAAGCTGAGTCTAC+TGG | 0.324422 | 3_4:-65020934 | Msa0514340:CDS |
| ACCACGAAACCTAGCCTTCC+AGG | 0.329881 | 3_4:+65019819 | None:intergenic |
| GGGAACTCACTTGACCCTAA+TGG | 0.330772 | 3_4:+65018406 | None:intergenic |
| ATATTTACAATCAGTATAAT+GGG | 0.337996 | 3_4:+65018465 | None:intergenic |
| CTGTTGTTTGATCTCTCAAT+TGG | 0.349084 | 3_4:+65019734 | None:intergenic |
| CAGGTTAAAGACAGGAGATA+TGG | 0.352026 | 3_4:-65018664 | Msa0514340:CDS |
| GGGTCAAGTGAGTTCCCATT+AGG | 0.352346 | 3_4:-65018421 | Msa0514340:three_prime_UTR |
| GAAGATAAAGCGTAGGGTTA+TGG | 0.354514 | 3_4:-65021133 | Msa0514340:CDS |
| CATTAACAAACACACCGTTC+TGG | 0.354718 | 3_4:-65018321 | Msa0514340:three_prime_UTR |
| CGGTGGCCACCGTGCGGTGG+TGG | 0.354820 | 3_4:+65021466 | None:intergenic |
| GAGTTCCAATTGAGGACATT+TGG | 0.366085 | 3_4:-65019085 | Msa0514340:CDS |
| GGAACTCACTTGACCCTAAT+GGG | 0.366995 | 3_4:+65018407 | None:intergenic |
| CGGCGGTGGCCACCGTGCGG+TGG | 0.373264 | 3_4:+65021463 | None:intergenic |
| TCTAGTAGGTTCTGTTGATT+GGG | 0.376109 | 3_4:-65021097 | Msa0514340:CDS |
| ATCGTCCAACCACAACCTTC+CGG | 0.379236 | 3_4:-65021222 | Msa0514340:CDS |
| TTGTACAGACCATGGATTCC+TGG | 0.380560 | 3_4:-65019837 | Msa0514340:intron |
| TTTGGTTTCTGGCGGAGATT+TGG | 0.382003 | 3_4:+65021409 | None:intergenic |
| ATTTCTTCGCGGGAGAGAAT+TGG | 0.383994 | 3_4:+65021312 | None:intergenic |
| TGCTTGCATCTTGGTGAACC+TGG | 0.385315 | 3_4:-65019181 | Msa0514340:CDS |
| TGCCAAGTTAAACGACATTT+GGG | 0.388462 | 3_4:+65021675 | None:intergenic |
| CTCCAAGTAGATTGAAATCA+AGG | 0.391880 | 3_4:-65021704 | Msa0514340:five_prime_UTR |
| GGAAGGCTAGGTTTCGTGGT+TGG | 0.394699 | 3_4:-65019816 | Msa0514340:CDS |
| AACCTTGATTTCAATCTACT+TGG | 0.395904 | 3_4:+65021702 | None:intergenic |
| TCCTTTCGGCTTGTATCTCT+GGG | 0.396799 | 3_4:-65018441 | Msa0514340:three_prime_UTR |
| GACGCCGACGGCTTGGGATT+CGG | 0.396813 | 3_4:+65021278 | None:intergenic |
| CAAGATCATCTAAAATTGAT+TGG | 0.398920 | 3_4:+65018574 | None:intergenic |
| GAGAAGTCGAGGGGCGGCGG+TGG | 0.404217 | 3_4:+65021449 | None:intergenic |
| CTGTTGATTGGGTTGATCGT+AGG | 0.406397 | 3_4:-65021086 | Msa0514340:CDS |
| TACCCAAATGTCGTTTAACT+TGG | 0.408337 | 3_4:-65021677 | Msa0514340:five_prime_UTR |
| AGAAGCGTCGTGGAAGGTTC+CGG | 0.409571 | 3_4:+65021203 | None:intergenic |
| AAGCGACGACGCCGACGGCT+TGG | 0.411672 | 3_4:+65021271 | None:intergenic |
| TAGTTCCAAATGTCCTCAAT+TGG | 0.413031 | 3_4:+65019080 | None:intergenic |
| TTTAACAATTGCTTGCATCT+TGG | 0.420825 | 3_4:-65019190 | Msa0514340:CDS |
| TGATTGTAAATATTTCCTTT+CGG | 0.421482 | 3_4:-65018455 | Msa0514340:three_prime_UTR |
| ATTCCTCAAAGCATTTAAAA+GGG | 0.424975 | 3_4:+65018514 | None:intergenic |
| GGCTTGGGATTCGGAGAGAG+GGG | 0.435674 | 3_4:+65021287 | None:intergenic |
| TAGGGTTATGGTTGGAGATA+AGG | 0.435965 | 3_4:-65021121 | Msa0514340:CDS |
| GGTTATCTTGCTGATACTCC+TGG | 0.436211 | 3_4:-65019407 | Msa0514340:CDS |
| TTCCACGACGCTTCTTCCTC+CGG | 0.440838 | 3_4:-65021195 | Msa0514340:CDS |
| GCTTGGGATTCGGAGAGAGG+GGG | 0.444173 | 3_4:+65021288 | None:intergenic |
| AGCGACGACGCCGACGGCTT+GGG | 0.447495 | 3_4:+65021272 | None:intergenic |
| GGTCAAGTGAGTTCCCATTA+GGG | 0.448628 | 3_4:-65018420 | Msa0514340:three_prime_UTR |
| AACCAAAGTGACAGAAGATT+CGG | 0.452756 | 3_4:+65018372 | None:intergenic |
| TCCTGGAAGGCTAGGTTTCG+TGG | 0.453297 | 3_4:-65019820 | Msa0514340:CDS |
| GTGGAGAAGTCGAGGGGCGG+CGG | 0.454962 | 3_4:+65021446 | None:intergenic |
| CTTGGGATTCGGAGAGAGGG+GGG | 0.455183 | 3_4:+65021289 | None:intergenic |
| TGTTGATTGGGTTGATCGTA+GGG | 0.457021 | 3_4:-65021085 | Msa0514340:CDS |
| CTCTGCTTCCATTATCTGGA+GGG | 0.457833 | 3_4:-65019430 | Msa0514340:CDS |
| GTTGGAGATAAGGTTCTAGT+AGG | 0.459409 | 3_4:-65021111 | Msa0514340:CDS |
| CGGCTTGGGATTCGGAGAGA+GGG | 0.460587 | 3_4:+65021286 | None:intergenic |
| CTCACGTCAAATAATATAGT+TGG | 0.462045 | 3_4:+65018206 | None:intergenic |
| TACGCGCATGAAATTGGCTT+GGG | 0.466467 | 3_4:+65021245 | None:intergenic |
| AAGGCTAGGTTTCGTGGTTG+GGG | 0.469259 | 3_4:-65019814 | Msa0514340:CDS |
| TGGCCACCGTGCGGTGGTGG+CGG | 0.469834 | 3_4:+65021469 | None:intergenic |
| AGGTTAAAGACAGGAGATAT+GGG | 0.470165 | 3_4:-65018663 | Msa0514340:CDS |
| CGTGCGGTGGTGGCGGATGA+TGG | 0.471121 | 3_4:+65021476 | None:intergenic |
| GCATAGCAGTTCAGCTCCTC+CGG | 0.471803 | 3_4:+65021176 | None:intergenic |
| GTTTCAACAAGAAGCGGCAG+AGG | 0.472643 | 3_4:-65019476 | Msa0514340:CDS |
| ATCCGAATCTTCTGTCACTT+TGG | 0.472909 | 3_4:-65018374 | Msa0514340:three_prime_UTR |
| TGAACCTGGTTGCATTGTGA+AGG | 0.479235 | 3_4:-65019167 | Msa0514340:CDS |
| TGGAAGGTTCCGGAAGGTTG+TGG | 0.482234 | 3_4:+65021213 | None:intergenic |
| AGATTTGGAAGTGGCGGAAG+TGG | 0.482820 | 3_4:+65021424 | None:intergenic |
| TCACTTTCAATAAACTAGGC+TGG | 0.486647 | 3_4:+65019378 | None:intergenic |
| GCTTTGAGGAGATTCTTGCT+TGG | 0.489229 | 3_4:+65021369 | None:intergenic |
| GACCGAGCTTGTCGATAAAG+AGG | 0.489417 | 3_4:-65020884 | Msa0514340:intron |
| GTTGTTGGTCCTAGTGGAGT+TGG | 0.490221 | 3_4:-65019709 | Msa0514340:CDS |
| AAGATTCGGATTGAACTAAT+GGG | 0.491015 | 3_4:+65018386 | None:intergenic |
| ATACTGCAGATGGGGAGAAT+TGG | 0.493768 | 3_4:-65019639 | Msa0514340:CDS |
| TTGTTGGTCCTAGTGGAGTT+GGG | 0.495356 | 3_4:-65019708 | Msa0514340:CDS |
| CTGCTTCCATTATCTGGAGG+GGG | 0.497196 | 3_4:-65019428 | Msa0514340:CDS |
| TTTGGAAGTGGCGGAAGTGG+TGG | 0.503442 | 3_4:+65021427 | None:intergenic |
| TGGTTGAAGCTGAGTCTACT+GGG | 0.506340 | 3_4:-65020933 | Msa0514340:CDS |
| ACGGCTTGGGATTCGGAGAG+AGG | 0.506518 | 3_4:+65021285 | None:intergenic |
| CCATGGATTCCTGGAAGGCT+AGG | 0.511868 | 3_4:-65019828 | Msa0514340:CDS |
| CGTACTTGTGATACTGCAGA+TGG | 0.516591 | 3_4:-65019649 | Msa0514340:CDS |
| CGGAAGTGGTGGAGAAGTCG+AGG | 0.517919 | 3_4:+65021438 | None:intergenic |
| CTAAAAGAGAAAGTGATGTA+AGG | 0.519678 | 3_4:-65019060 | Msa0514340:intron |
| CTAGACTTCCCAACTCCACT+AGG | 0.522416 | 3_4:+65019700 | None:intergenic |
| AACTATATTATTTGACGTGA+GGG | 0.525483 | 3_4:-65018204 | None:intergenic |
| TTTGTCACTTTCAATAAACT+AGG | 0.528240 | 3_4:+65019374 | None:intergenic |
| GATCAAACAACAGTGGTTGT+TGG | 0.530900 | 3_4:-65019724 | Msa0514340:CDS |
| AGAGGAATGTGATTCGTGAC+TGG | 0.531609 | 3_4:+65021634 | None:intergenic |
| TCTGCTTCCATTATCTGGAG+GGG | 0.535703 | 3_4:-65019429 | Msa0514340:CDS |
| AAACTAGGCTGGTTAAATCC+AGG | 0.536343 | 3_4:+65019389 | None:intergenic |
| GATTTCAATCTACTTGGAGA+GGG | 0.537267 | 3_4:+65021708 | None:intergenic |
| CCTAGCCTTCCAGGAATCCA+TGG | 0.539729 | 3_4:+65019828 | None:intergenic |
| ATAAAGCGTAGGGTTATGGT+TGG | 0.540235 | 3_4:-65021129 | Msa0514340:CDS |
| TCTCTGCTTCCATTATCTGG+AGG | 0.540330 | 3_4:-65019431 | Msa0514340:CDS |
| GAGAAGATCAATGTTATGTC+CGG | 0.541511 | 3_4:+65019762 | None:intergenic |
| GGAGAGAATTGGAGCGAGAG+AGG | 0.542168 | 3_4:+65021323 | None:intergenic |
| AGCGTAAAAGGCTCAAGCTT+AGG | 0.542808 | 3_4:+65020967 | None:intergenic |
| TTGAAACCTCTGCAACTCGC+TGG | 0.543440 | 3_4:+65019492 | None:intergenic |
| GCTGATTGCATATAAATGAA+TGG | 0.545289 | 3_4:-65018283 | Msa0514340:three_prime_UTR |
| GAGGACTGAGCGAGCGAGAG+AGG | 0.546169 | 3_4:+65021616 | None:intergenic |
| AGAAGCATAGAAGACAGTCT+AGG | 0.546591 | 3_4:-65018608 | Msa0514340:CDS |
| TTACGCGCATGAAATTGGCT+TGG | 0.548758 | 3_4:+65021244 | None:intergenic |
| TTCTGGCGGAGATTTGGAAG+TGG | 0.551031 | 3_4:+65021415 | None:intergenic |
| ACAGTGGTTGTTGGTCCTAG+TGG | 0.554024 | 3_4:-65019715 | Msa0514340:CDS |
| GAACCTGGTTGCATTGTGAA+GGG | 0.563500 | 3_4:-65019166 | Msa0514340:CDS |
| TGCGAGCGACATCTTGAAGA+AGG | 0.563718 | 3_4:+65021506 | None:intergenic |
| GCAGAGGTTTCAACAAGAAG+CGG | 0.565810 | 3_4:-65019482 | Msa0514340:CDS |
| GGAAGTGGTGGAGAAGTCGA+GGG | 0.572092 | 3_4:+65021439 | None:intergenic |
| TTGTTGAGAGCAAGAGTGAG+AGG | 0.573575 | 3_4:+65020907 | None:intergenic |
| TGATTTCAATCTACTTGGAG+AGG | 0.576231 | 3_4:+65021707 | None:intergenic |
| AGGTTCCGGAAGGTTGTGGT+TGG | 0.578813 | 3_4:+65021217 | None:intergenic |
| TCCTCAAAGCATTTAAAAGG+GGG | 0.580228 | 3_4:+65018516 | None:intergenic |
| GGAAGAAGCGACGACGCCGA+CGG | 0.580853 | 3_4:+65021266 | None:intergenic |
| GAGTTCATTTCTCAAGTGTG+AGG | 0.583223 | 3_4:+65021597 | None:intergenic |
| CAGATCAGGAAAATGCTTGG+TGG | 0.584183 | 3_4:-65019235 | Msa0514340:CDS |
| TCAGAGAGGAGTTCCAATTG+AGG | 0.586932 | 3_4:-65019093 | Msa0514340:CDS |
| ATTCAGATCAGGAAAATGCT+TGG | 0.587023 | 3_4:-65019238 | Msa0514340:intron |
| AACCTCTTTATCGACAAGCT+CGG | 0.587353 | 3_4:+65020882 | None:intergenic |
| ACCTGGTTGCATTGTGAAGG+GGG | 0.590236 | 3_4:-65019164 | Msa0514340:CDS |
| CAACTATATTATTTGACGTG+AGG | 0.590322 | 3_4:-65018205 | None:intergenic |
| GGGCGGCGGTGGCCACCGTG+CGG | 0.598094 | 3_4:+65021460 | None:intergenic |
| TTCCTCAAAGCATTTAAAAG+GGG | 0.598316 | 3_4:+65018515 | None:intergenic |
| AACCTGGTTGCATTGTGAAG+GGG | 0.599384 | 3_4:-65019165 | Msa0514340:CDS |
| GGAGGAAGAAGCGTCGTGGA+AGG | 0.600717 | 3_4:+65021197 | None:intergenic |
| AGTACGAGGATTGCTTCTAA+GGG | 0.603135 | 3_4:+65019666 | None:intergenic |
| AAGTGATCTACATTAGCCAC+AGG | 0.604808 | 3_4:+65021015 | None:intergenic |
| GTACTTGTGATACTGCAGAT+GGG | 0.607653 | 3_4:-65019648 | Msa0514340:CDS |
| TGACGACCAGCGAGTTGCAG+AGG | 0.611255 | 3_4:-65019498 | Msa0514340:CDS |
| CACGACGCTTCTTCCTCCGG+AGG | 0.615950 | 3_4:-65021192 | Msa0514340:CDS |
| GTGGTGGAGAAGTCGAGGGG+CGG | 0.619313 | 3_4:+65021443 | None:intergenic |
| TACTTGTGATACTGCAGATG+GGG | 0.623537 | 3_4:-65019647 | Msa0514340:CDS |
| CTCCGGAGGAAGAAGCGTCG+TGG | 0.623732 | 3_4:+65021193 | None:intergenic |
| GCTGAAGAAGATAAAGCGTA+GGG | 0.624542 | 3_4:-65021139 | Msa0514340:CDS |
| TGACGACAATTTGCTTGATG+AGG | 0.624956 | 3_4:-65018547 | Msa0514340:CDS |
| TTTCAACAAGAAGCGGCAGA+GGG | 0.628194 | 3_4:-65019475 | Msa0514340:CDS |
| TGCTGAAGAAGATAAAGCGT+AGG | 0.630697 | 3_4:-65021140 | Msa0514340:CDS |
| GTTGATTGGGTTGATCGTAG+GGG | 0.630927 | 3_4:-65021084 | Msa0514340:CDS |
| ACCCAGAGATACAAGCCGAA+AGG | 0.636929 | 3_4:+65018440 | None:intergenic |
| CTCTCCGAATCCCAAGCCGT+CGG | 0.641704 | 3_4:-65021282 | Msa0514340:CDS |
| TATTTACAATCAGTATAATG+GGG | 0.644674 | 3_4:+65018466 | None:intergenic |
| GAAGTGGTGGAGAAGTCGAG+GGG | 0.645864 | 3_4:+65021440 | None:intergenic |
| TGGCGGAGATTTGGAAGTGG+CGG | 0.647171 | 3_4:+65021418 | None:intergenic |
| TGAAATGCTTGATCCTCCTG+TGG | 0.652697 | 3_4:-65021031 | Msa0514340:CDS |
| ACAGACCATGGATTCCTGGA+AGG | 0.654064 | 3_4:-65019833 | Msa0514340:intron |
| TCATTTATATGCAATCAGCA+AGG | 0.659438 | 3_4:+65018287 | None:intergenic |
| TAGCAGTTCAGCTCCTCCGG+AGG | 0.661076 | 3_4:+65021179 | None:intergenic |
| TGATCTACATTAGCCACAGG+AGG | 0.662023 | 3_4:+65021018 | None:intergenic |
| CATCATCCGCCACCACCGCA+CGG | 0.664641 | 3_4:-65021475 | Msa0514340:CDS |
| TGATGAGATTAGAATCAGAG+AGG | 0.672359 | 3_4:-65019107 | Msa0514340:CDS |
| GCGTCGTGGAAGGTTCCGGA+AGG | 0.677099 | 3_4:+65021207 | None:intergenic |
| AGGAACATCATAATCCAGAA+CGG | 0.692664 | 3_4:+65018307 | None:intergenic |
| ATTGAGAGATCAAACAACAG+TGG | 0.706257 | 3_4:-65019731 | Msa0514340:CDS |
| TGCTTCTTAAGCATCAAACG+TGG | 0.724089 | 3_4:+65018624 | None:intergenic |
| CATCCGCCACCACCGCACGG+TGG | 0.767577 | 3_4:-65021472 | Msa0514340:CDS |
| TCTGCAGTATCACAAGTACG+AGG | 0.774848 | 3_4:+65019652 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTATTATTTTAAATATTTGG+AGG | - | chr3_4:65019885-65019904 | Msa0514340:intron | 10.0% |
| !!! | TATGACAATATTTTTTATGT+TGG | - | chr3_4:65019322-65019341 | Msa0514340:intron | 15.0% |
| !! | TTTCTTTATATAAACTATCT+TGG | - | chr3_4:65019615-65019634 | Msa0514340:intron | 15.0% |
| !!! | ATTTACTTACAAAACTATTT+TGG | + | chr3_4:65019691-65019710 | None:intergenic | 15.0% |
| !! | CAACAAATTCATAAATTTAA+AGG | + | chr3_4:65019939-65019958 | None:intergenic | 15.0% |
| !! | AATTAAACAATTATTCAAAC+CGG | + | chr3_4:65020657-65020676 | None:intergenic | 15.0% |
| !! | ATATTTACAATCAGTATAAT+GGG | + | chr3_4:65021464-65021483 | None:intergenic | 15.0% |
| !! | AATATTTACAATCAGTATAA+TGG | + | chr3_4:65021465-65021484 | None:intergenic | 15.0% |
| !!! | TTTCAAAGCTTTTTTTGAAA+CGG | + | chr3_4:65018388-65018407 | None:intergenic | 20.0% |
| !!! | TGGAATATAAAAGAGTATTT+TGG | - | chr3_4:65019342-65019361 | Msa0514340:intron | 20.0% |
| !! | AGTAATAACATAAACAATTG+CGG | + | chr3_4:65019546-65019565 | None:intergenic | 20.0% |
| !!! | ATAAGCTATTTTTATACCAA+AGG | - | chr3_4:65019574-65019593 | Msa0514340:intron | 20.0% |
| !!! | TATTTGTTATGTTTCTAACT+TGG | - | chr3_4:65020020-65020039 | Msa0514340:intron | 20.0% |
| !! | TAACTTAAACATACTAACTT+CGG | + | chr3_4:65020601-65020620 | None:intergenic | 20.0% |
| !! | TATTTACAATCAGTATAATG+GGG | + | chr3_4:65021463-65021482 | None:intergenic | 20.0% |
| !! | TGATTGTAAATATTTCCTTT+CGG | - | chr3_4:65021471-65021490 | Msa0514340:CDS | 20.0% |
| !! | TCAAATAATATAGTTGGATT+TGG | + | chr3_4:65021717-65021736 | None:intergenic | 20.0% |
| ! | AAAAAAATCACATCCAACAT+TGG | + | chr3_4:65019182-65019201 | None:intergenic | 25.0% |
| ! | AATTAAGCACATGTAACATA+AGG | - | chr3_4:65019241-65019260 | Msa0514340:intron | 25.0% |
| ! | ATTAAGCACATGTAACATAA+GGG | - | chr3_4:65019242-65019261 | Msa0514340:intron | 25.0% |
| !!! | AGTTTTGTAAGTAAATATGC+TGG | - | chr3_4:65019695-65019714 | Msa0514340:CDS | 25.0% |
| ! | GTACTTATCTCAATTGAAAA+AGG | + | chr3_4:65019754-65019773 | None:intergenic | 25.0% |
| ! | TTTCAATTGAGATAAGTACT+TGG | - | chr3_4:65019755-65019774 | Msa0514340:CDS | 25.0% |
| ! | GAGCTTCTTAAATAATTTGA+CGG | - | chr3_4:65019835-65019854 | Msa0514340:intron | 25.0% |
| ! | AGCTTCTTAAATAATTTGAC+GGG | - | chr3_4:65019836-65019855 | Msa0514340:intron | 25.0% |
| !!! | TAAATATTTGGAGGTATCAT+TGG | - | chr3_4:65019894-65019913 | Msa0514340:intron | 25.0% |
| !!! | AAATATTTGGAGGTATCATT+GGG | - | chr3_4:65019895-65019914 | Msa0514340:intron | 25.0% |
| !! | TTGAAAAGTTTGTTCAAGTT+CGG | - | chr3_4:65019956-65019975 | Msa0514340:intron | 25.0% |
| !! | TTTTACTATGTGTATGACTT+TGG | - | chr3_4:65020349-65020368 | Msa0514340:intron | 25.0% |
| !!! | TTTGTCACTTTCAATAAACT+AGG | + | chr3_4:65020555-65020574 | None:intergenic | 25.0% |
| ! | AACTTAAACATACTAACTTC+GGG | + | chr3_4:65020600-65020619 | None:intergenic | 25.0% |
| ! | GTGAATATACTAGATATAGT+TGG | + | chr3_4:65020627-65020646 | None:intergenic | 25.0% |
| !! | TAGTATATTCACAGTTTTTC+CGG | - | chr3_4:65020635-65020654 | Msa0514340:intron | 25.0% |
| ! | AATGCAAAAGATTTCTAACT+TGG | - | chr3_4:65021135-65021154 | Msa0514340:CDS | 25.0% |
| ! | CAAAAGTTGTAACAAGTATT+TGG | - | chr3_4:65021218-65021237 | Msa0514340:CDS | 25.0% |
| !! | CAAGATCATCTAAAATTGAT+TGG | + | chr3_4:65021355-65021374 | None:intergenic | 25.0% |
| !! | ATTCCTCAAAGCATTTAAAA+GGG | + | chr3_4:65021415-65021434 | None:intergenic | 25.0% |
| AACCTTGATTTCAATCTACT+TGG | + | chr3_4:65018227-65018246 | None:intergenic | 30.0% | |
| TCATAATCAGAATGTCGTTA+TGG | + | chr3_4:65019081-65019100 | None:intergenic | 30.0% | |
| ! | CACAATTTTCATCTAACACA+AGG | + | chr3_4:65019144-65019163 | None:intergenic | 30.0% |
| CTTGTGTTAGATGAAAATTG+TGG | - | chr3_4:65019142-65019161 | Msa0514340:CDS | 30.0% | |
| ! | TTTTCAGCCAATAAGAGTTA+AGG | - | chr3_4:65019198-65019217 | Msa0514340:CDS | 30.0% |
| AAATCAGCCTTAACTCTTAT+TGG | + | chr3_4:65019208-65019227 | None:intergenic | 30.0% | |
| AATAAGAGTTAAGGCTGATT+TGG | - | chr3_4:65019207-65019226 | Msa0514340:CDS | 30.0% | |
| ! | ACCAGTTTCTAGATCAAAAA+GGG | - | chr3_4:65019473-65019492 | Msa0514340:CDS | 30.0% |
| TCAAATAAGTGAATCCAAAG+AGG | - | chr3_4:65019727-65019746 | Msa0514340:CDS | 30.0% | |
| GATTCAACACTGCAAAAAAT+TGG | + | chr3_4:65020145-65020164 | None:intergenic | 30.0% | |
| !!! | ATTTTTTGCAGTGTTGAATC+CGG | - | chr3_4:65020145-65020164 | Msa0514340:intron | 30.0% |
| TAAAATCTGAGAAACAATGC+AGG | + | chr3_4:65020394-65020413 | None:intergenic | 30.0% | |
| !! | TGCATTGTTTCTCAGATTTT+AGG | - | chr3_4:65020393-65020412 | Msa0514340:intron | 30.0% |
| TTTAACAATTGCTTGCATCT+TGG | - | chr3_4:65020736-65020755 | Msa0514340:intron | 30.0% | |
| CTAAAAGAGAAAGTGATGTA+AGG | - | chr3_4:65020866-65020885 | Msa0514340:intron | 30.0% | |
| TGTATGATACTTGATCGAAT+AGG | - | chr3_4:65020941-65020960 | Msa0514340:CDS | 30.0% | |
| TTTGACAAGCAATATACAGT+AGG | + | chr3_4:65021193-65021212 | None:intergenic | 30.0% | |
| ! | ACTAATACGCTATTCTTTTC+AGG | - | chr3_4:65021243-65021262 | Msa0514340:CDS | 30.0% |
| !!! | ATTCTTTTCAGGTTAAAGAC+AGG | - | chr3_4:65021254-65021273 | Msa0514340:CDS | 30.0% |
| ! | TTCCTCAAAGCATTTAAAAG+GGG | + | chr3_4:65021414-65021433 | None:intergenic | 30.0% |
| ! | CATTCCTCAAAGCATTTAAA+AGG | + | chr3_4:65021416-65021435 | None:intergenic | 30.0% |
| GGGGATTAACGAAAAATTTA+AGG | + | chr3_4:65021444-65021463 | None:intergenic | 30.0% | |
| AAGATTCGGATTGAACTAAT+GGG | + | chr3_4:65021543-65021562 | None:intergenic | 30.0% | |
| TCATTTATATGCAATCAGCA+AGG | + | chr3_4:65021642-65021661 | None:intergenic | 30.0% | |
| GCTGATTGCATATAAATGAA+TGG | - | chr3_4:65021643-65021662 | Msa0514340:five_prime_UTR | 30.0% | |
| CTCACGTCAAATAATATAGT+TGG | + | chr3_4:65021723-65021742 | None:intergenic | 30.0% | |
| GATTTCAATCTACTTGGAGA+GGG | + | chr3_4:65018221-65018240 | None:intergenic | 35.0% | |
| TGATTTCAATCTACTTGGAG+AGG | + | chr3_4:65018222-65018241 | None:intergenic | 35.0% | |
| CTCCAAGTAGATTGAAATCA+AGG | - | chr3_4:65018222-65018241 | Msa0514340:three_prime_UTR | 35.0% | |
| ! | TACCCAAATGTCGTTTAACT+TGG | - | chr3_4:65018249-65018268 | Msa0514340:three_prime_UTR | 35.0% |
| TGCCAAGTTAAACGACATTT+GGG | + | chr3_4:65018254-65018273 | None:intergenic | 35.0% | |
| TTGCCAAGTTAAACGACATT+TGG | + | chr3_4:65018255-65018274 | None:intergenic | 35.0% | |
| TTCTAGTAGGTTCTGTTGAT+TGG | - | chr3_4:65018828-65018847 | Msa0514340:intron | 35.0% | |
| ! | TCTAGTAGGTTCTGTTGATT+GGG | - | chr3_4:65018829-65018848 | Msa0514340:intron | 35.0% |
| AGCTTAGATTAGACCAATGT+TGG | - | chr3_4:65019166-65019185 | Msa0514340:CDS | 35.0% | |
| CAAAACAGGTAACAAATGAC+TGG | + | chr3_4:65019441-65019460 | None:intergenic | 35.0% | |
| ! | GACCAGTTTCTAGATCAAAA+AGG | - | chr3_4:65019472-65019491 | Msa0514340:CDS | 35.0% |
| ! | CCAGTTTCTAGATCAAAAAG+GGG | - | chr3_4:65019474-65019493 | Msa0514340:CDS | 35.0% |
| TTTGATCTGCTAGAAAACAG+GGG | + | chr3_4:65019519-65019538 | None:intergenic | 35.0% | |
| GTTTGATCTGCTAGAAAACA+GGG | + | chr3_4:65019520-65019539 | None:intergenic | 35.0% | |
| !!! | GTCTGACTTGTTTTATCCTT+TGG | + | chr3_4:65019593-65019612 | None:intergenic | 35.0% |
| CAATTGAAAAAGGACCTCTT+TGG | + | chr3_4:65019744-65019763 | None:intergenic | 35.0% | |
| ! | ACTTGGCTCTTAATACAAAC+AGG | - | chr3_4:65019772-65019791 | Msa0514340:CDS | 35.0% |
| !! | GGCAGAAACTGATTCATTTT+AGG | - | chr3_4:65019857-65019876 | Msa0514340:intron | 35.0% |
| CATCAGAAAATAATCACAGC+TGG | + | chr3_4:65020049-65020068 | None:intergenic | 35.0% | |
| GAGAAGATCAATGTTATGTC+CGG | + | chr3_4:65020167-65020186 | None:intergenic | 35.0% | |
| ! | CTGTTGTTTGATCTCTCAAT+TGG | + | chr3_4:65020195-65020214 | None:intergenic | 35.0% |
| ATTGAGAGATCAAACAACAG+TGG | - | chr3_4:65020195-65020214 | Msa0514340:intron | 35.0% | |
| TCACTTTCAATAAACTAGGC+TGG | + | chr3_4:65020551-65020570 | None:intergenic | 35.0% | |
| ! | CATTTTCCTGATCTGAATAG+GGG | + | chr3_4:65020686-65020705 | None:intergenic | 35.0% |
| ! | GCATTTTCCTGATCTGAATA+GGG | + | chr3_4:65020687-65020706 | None:intergenic | 35.0% |
| ! | AGCATTTTCCTGATCTGAAT+AGG | + | chr3_4:65020688-65020707 | None:intergenic | 35.0% |
| ATTCAGATCAGGAAAATGCT+TGG | - | chr3_4:65020688-65020707 | Msa0514340:intron | 35.0% | |
| TGATGAGATTAGAATCAGAG+AGG | - | chr3_4:65020819-65020838 | Msa0514340:intron | 35.0% | |
| TAGTTCCAAATGTCCTCAAT+TGG | + | chr3_4:65020849-65020868 | None:intergenic | 35.0% | |
| !!! | TGATTTTTTGACCATGTACG+AGG | - | chr3_4:65020983-65021002 | Msa0514340:CDS | 35.0% |
| ACACTAACATGAAAGAGAGT+GGG | - | chr3_4:65021047-65021066 | Msa0514340:CDS | 35.0% | |
| !!! | AAAGAGAGTGGGCTATTTTT+AGG | - | chr3_4:65021058-65021077 | Msa0514340:CDS | 35.0% |
| !!! | AAGAGAGTGGGCTATTTTTA+GGG | - | chr3_4:65021059-65021078 | Msa0514340:CDS | 35.0% |
| AGGTTAAAGACAGGAGATAT+GGG | - | chr3_4:65021263-65021282 | Msa0514340:CDS | 35.0% | |
| ! | TCCTCAAAGCATTTAAAAGG+GGG | + | chr3_4:65021413-65021432 | None:intergenic | 35.0% |
| GAAGATTCGGATTGAACTAA+TGG | + | chr3_4:65021544-65021563 | None:intergenic | 35.0% | |
| AACCAAAGTGACAGAAGATT+CGG | + | chr3_4:65021557-65021576 | None:intergenic | 35.0% | |
| AGGAACATCATAATCCAGAA+CGG | + | chr3_4:65021622-65021641 | None:intergenic | 35.0% | |
| GAGTTCATTTCTCAAGTGTG+AGG | + | chr3_4:65018332-65018351 | None:intergenic | 40.0% | |
| !!! | TTTAGGGTTTTGGTTTCTGG+CGG | + | chr3_4:65018528-65018547 | None:intergenic | 40.0% |
| !!! | GTGTTTAGGGTTTTGGTTTC+TGG | + | chr3_4:65018531-65018550 | None:intergenic | 40.0% |
| TGCTGAAGAAGATAAAGCGT+AGG | - | chr3_4:65018786-65018805 | Msa0514340:intron | 40.0% | |
| GCTGAAGAAGATAAAGCGTA+GGG | - | chr3_4:65018787-65018806 | Msa0514340:intron | 40.0% | |
| GAAGATAAAGCGTAGGGTTA+TGG | - | chr3_4:65018793-65018812 | Msa0514340:intron | 40.0% | |
| ATAAAGCGTAGGGTTATGGT+TGG | - | chr3_4:65018797-65018816 | Msa0514340:intron | 40.0% | |
| TAGGGTTATGGTTGGAGATA+AGG | - | chr3_4:65018805-65018824 | Msa0514340:intron | 40.0% | |
| ! | GTTGGAGATAAGGTTCTAGT+AGG | - | chr3_4:65018815-65018834 | Msa0514340:intron | 40.0% |
| !! | TGTTGATTGGGTTGATCGTA+GGG | - | chr3_4:65018841-65018860 | Msa0514340:intron | 40.0% |
| AAGTGATCTACATTAGCCAC+AGG | + | chr3_4:65018914-65018933 | None:intergenic | 40.0% | |
| AAAAACCGCGTTAGCGTAAA+AGG | + | chr3_4:65018974-65018993 | None:intergenic | 40.0% | |
| ! | TTTTACGCTAACGCGGTTTT+TGG | - | chr3_4:65018973-65018992 | Msa0514340:intron | 40.0% |
| AACCTCTTTATCGACAAGCT+CGG | + | chr3_4:65019047-65019066 | None:intergenic | 40.0% | |
| CTAGACAAAAAGTTGTCCCA+TGG | - | chr3_4:65019385-65019404 | Msa0514340:CDS | 40.0% | |
| TTGATCTAGAAACTGGTCGT+AGG | + | chr3_4:65019470-65019489 | None:intergenic | 40.0% | |
| ! | CCCCTTTTTGATCTAGAAAC+TGG | + | chr3_4:65019477-65019496 | None:intergenic | 40.0% |
| CGTTTGATCTGCTAGAAAAC+AGG | + | chr3_4:65019521-65019540 | None:intergenic | 40.0% | |
| ! | AACAGGCTTTTATGCGTTGA+AGG | - | chr3_4:65019789-65019808 | Msa0514340:CDS | 40.0% |
| TTTCACTCTTGTACAGACCA+TGG | - | chr3_4:65020081-65020100 | Msa0514340:intron | 40.0% | |
| CAACACTGCAAAAAATTGGC+TGG | + | chr3_4:65020141-65020160 | None:intergenic | 40.0% | |
| GATCAAACAACAGTGGTTGT+TGG | - | chr3_4:65020202-65020221 | Msa0514340:intron | 40.0% | |
| AGTACGAGGATTGCTTCTAA+GGG | + | chr3_4:65020263-65020282 | None:intergenic | 40.0% | |
| AAGTACGAGGATTGCTTCTA+AGG | + | chr3_4:65020264-65020283 | None:intergenic | 40.0% | |
| GTACTTGTGATACTGCAGAT+GGG | - | chr3_4:65020278-65020297 | Msa0514340:intron | 40.0% | |
| TACTTGTGATACTGCAGATG+GGG | - | chr3_4:65020279-65020298 | Msa0514340:intron | 40.0% | |
| GTCGAGAAAAAGAAACACAC+AGG | + | chr3_4:65020319-65020338 | None:intergenic | 40.0% | |
| !! | CTCAGATTTTAGGTAGCAAG+TGG | - | chr3_4:65020403-65020422 | Msa0514340:intron | 40.0% |
| ! | AAACTAGGCTGGTTAAATCC+AGG | + | chr3_4:65020540-65020559 | None:intergenic | 40.0% |
| GAGTTCCAATTGAGGACATT+TGG | - | chr3_4:65020841-65020860 | Msa0514340:intron | 40.0% | |
| ATGTATAGCATCCTCGTACA+TGG | + | chr3_4:65020997-65021016 | None:intergenic | 40.0% | |
| GACACTAACATGAAAGAGAG+TGG | - | chr3_4:65021046-65021065 | Msa0514340:CDS | 40.0% | |
| CAGGTTAAAGACAGGAGATA+TGG | - | chr3_4:65021262-65021281 | Msa0514340:CDS | 40.0% | |
| TGCTTCTTAAGCATCAAACG+TGG | + | chr3_4:65021305-65021324 | None:intergenic | 40.0% | |
| ! | AGAAGCATAGAAGACAGTCT+AGG | - | chr3_4:65021318-65021337 | Msa0514340:CDS | 40.0% |
| ! | TGACGACAATTTGCTTGATG+AGG | - | chr3_4:65021379-65021398 | Msa0514340:CDS | 40.0% |
| ! | TCCCCCTTTTAAATGCTTTG+AGG | - | chr3_4:65021409-65021428 | Msa0514340:CDS | 40.0% |
| ! | ATCCGAATCTTCTGTCACTT+TGG | - | chr3_4:65021552-65021571 | Msa0514340:five_prime_UTR | 40.0% |
| CATTAACAAACACACCGTTC+TGG | - | chr3_4:65021605-65021624 | Msa0514340:five_prime_UTR | 40.0% | |
| AGAGGAATGTGATTCGTGAC+TGG | + | chr3_4:65018295-65018314 | None:intergenic | 45.0% | |
| !! | TTTGGTTTCTGGCGGAGATT+TGG | + | chr3_4:65018520-65018539 | None:intergenic | 45.0% |
| !! | GAGCTTCGTGTTTAGGGTTT+TGG | + | chr3_4:65018538-65018557 | None:intergenic | 45.0% |
| TGCTTGGAGCTTCGTGTTTA+GGG | + | chr3_4:65018544-65018563 | None:intergenic | 45.0% | |
| TTGCTTGGAGCTTCGTGTTT+AGG | + | chr3_4:65018545-65018564 | None:intergenic | 45.0% | |
| !! | GCTTTGAGGAGATTCTTGCT+TGG | + | chr3_4:65018560-65018579 | None:intergenic | 45.0% |
| ! | TGAGTGTGCGTTTTGCTTTG+AGG | + | chr3_4:65018574-65018593 | None:intergenic | 45.0% |
| ATTTCTTCGCGGGAGAGAAT+TGG | + | chr3_4:65018617-65018636 | None:intergenic | 45.0% | |
| ! | TACGCGCATGAAATTGGCTT+GGG | + | chr3_4:65018684-65018703 | None:intergenic | 45.0% |
| TTACGCGCATGAAATTGGCT+TGG | + | chr3_4:65018685-65018704 | None:intergenic | 45.0% | |
| GACGATTACGCGCATGAAAT+TGG | + | chr3_4:65018690-65018709 | None:intergenic | 45.0% | |
| !! | CTGTTGATTGGGTTGATCGT+AGG | - | chr3_4:65018840-65018859 | Msa0514340:intron | 45.0% |
| !! | GTTGATTGGGTTGATCGTAG+GGG | - | chr3_4:65018842-65018861 | Msa0514340:intron | 45.0% |
| TGAAATGCTTGATCCTCCTG+TGG | - | chr3_4:65018895-65018914 | Msa0514340:intron | 45.0% | |
| TGATCTACATTAGCCACAGG+AGG | + | chr3_4:65018911-65018930 | None:intergenic | 45.0% | |
| AGCGTAAAAGGCTCAAGCTT+AGG | + | chr3_4:65018962-65018981 | None:intergenic | 45.0% | |
| ! | TTGAGCCTTTTACGCTAACG+CGG | - | chr3_4:65018966-65018985 | Msa0514340:intron | 45.0% |
| TTGGTTGAAGCTGAGTCTAC+TGG | - | chr3_4:65018992-65019011 | Msa0514340:intron | 45.0% | |
| TGGTTGAAGCTGAGTCTACT+GGG | - | chr3_4:65018993-65019012 | Msa0514340:intron | 45.0% | |
| TTGTTGAGAGCAAGAGTGAG+AGG | + | chr3_4:65019022-65019041 | None:intergenic | 45.0% | |
| AAGTTGTCCCATGGTTAGTG+AGG | - | chr3_4:65019394-65019413 | Msa0514340:CDS | 45.0% | |
| AGTTGTCCCATGGTTAGTGA+GGG | - | chr3_4:65019395-65019414 | Msa0514340:CDS | 45.0% | |
| TCTTGTCCCTCACTAACCAT+GGG | + | chr3_4:65019404-65019423 | None:intergenic | 45.0% | |
| TTCTTGTCCCTCACTAACCA+TGG | + | chr3_4:65019405-65019424 | None:intergenic | 45.0% | |
| TCTGCTAGAAAACAGGGGAT+TGG | + | chr3_4:65019514-65019533 | None:intergenic | 45.0% | |
| TTGTACAGACCATGGATTCC+TGG | - | chr3_4:65020089-65020108 | Msa0514340:intron | 45.0% | |
| TTGTTGGTCCTAGTGGAGTT+GGG | - | chr3_4:65020218-65020237 | Msa0514340:intron | 45.0% | |
| TCTGCAGTATCACAAGTACG+AGG | + | chr3_4:65020277-65020296 | None:intergenic | 45.0% | |
| CGTACTTGTGATACTGCAGA+TGG | - | chr3_4:65020277-65020296 | Msa0514340:intron | 45.0% | |
| ATACTGCAGATGGGGAGAAT+TGG | - | chr3_4:65020287-65020306 | Msa0514340:intron | 45.0% | |
| GAGAAACAATGCAGGTACAC+AGG | + | chr3_4:65020386-65020405 | None:intergenic | 45.0% | |
| GCAGAGGTTTCAACAAGAAG+CGG | - | chr3_4:65020444-65020463 | Msa0514340:intron | 45.0% | |
| TTTCAACAAGAAGCGGCAGA+GGG | - | chr3_4:65020451-65020470 | Msa0514340:intron | 45.0% | |
| GTCTCTCTGCTTCCATTATC+TGG | - | chr3_4:65020492-65020511 | Msa0514340:intron | 45.0% | |
| TCTCTGCTTCCATTATCTGG+AGG | - | chr3_4:65020495-65020514 | Msa0514340:intron | 45.0% | |
| CTCTGCTTCCATTATCTGGA+GGG | - | chr3_4:65020496-65020515 | Msa0514340:intron | 45.0% | |
| TCTGCTTCCATTATCTGGAG+GGG | - | chr3_4:65020497-65020516 | Msa0514340:intron | 45.0% | |
| AGATAACCCCCTCCAGATAA+TGG | + | chr3_4:65020507-65020526 | None:intergenic | 45.0% | |
| GGTTATCTTGCTGATACTCC+TGG | - | chr3_4:65020519-65020538 | Msa0514340:intron | 45.0% | |
| CTGTTTCCCCTATTCAGATC+AGG | - | chr3_4:65020677-65020696 | Msa0514340:intron | 45.0% | |
| CAGATCAGGAAAATGCTTGG+TGG | - | chr3_4:65020691-65020710 | Msa0514340:intron | 45.0% | |
| TGAACCTGGTTGCATTGTGA+AGG | - | chr3_4:65020759-65020778 | Msa0514340:intron | 45.0% | |
| GAACCTGGTTGCATTGTGAA+GGG | - | chr3_4:65020760-65020779 | Msa0514340:intron | 45.0% | |
| AACCTGGTTGCATTGTGAAG+GGG | - | chr3_4:65020761-65020780 | Msa0514340:intron | 45.0% | |
| TTGCATTGTGAAGGGGGATT+GGG | - | chr3_4:65020768-65020787 | Msa0514340:intron | 45.0% | |
| TCAGAGAGGAGTTCCAATTG+AGG | - | chr3_4:65020833-65020852 | Msa0514340:intron | 45.0% | |
| ! | TTCCTTTCGGCTTGTATCTC+TGG | - | chr3_4:65021484-65021503 | Msa0514340:CDS | 45.0% |
| ! | TCCTTTCGGCTTGTATCTCT+GGG | - | chr3_4:65021485-65021504 | Msa0514340:CDS | 45.0% |
| GGTCAAGTGAGTTCCCATTA+GGG | - | chr3_4:65021506-65021525 | Msa0514340:exon | 45.0% | |
| GGAACTCACTTGACCCTAAT+GGG | + | chr3_4:65021522-65021541 | None:intergenic | 45.0% | |
| !!! | CAATTATTATTTTAAATATT+TGG | - | chr3_4:65019882-65019901 | Msa0514340:intron | 5.0% |
| TGCGAGCGACATCTTGAAGA+AGG | + | chr3_4:65018423-65018442 | None:intergenic | 50.0% | |
| ! | AGATTTGGAAGTGGCGGAAG+TGG | + | chr3_4:65018505-65018524 | None:intergenic | 50.0% |
| TTCTGGCGGAGATTTGGAAG+TGG | + | chr3_4:65018514-65018533 | None:intergenic | 50.0% | |
| ATCGTCCAACCACAACCTTC+CGG | - | chr3_4:65018704-65018723 | Msa0514340:intron | 50.0% | |
| GACCGAGCTTGTCGATAAAG+AGG | - | chr3_4:65019042-65019061 | Msa0514340:intron | 50.0% | |
| GTCGTAGGCTTGGACAAAAC+AGG | + | chr3_4:65019455-65019474 | None:intergenic | 50.0% | |
| CTAGAAACTGGTCGTAGGCT+TGG | + | chr3_4:65019465-65019484 | None:intergenic | 50.0% | |
| ACAGACCATGGATTCCTGGA+AGG | - | chr3_4:65020093-65020112 | Msa0514340:intron | 50.0% | |
| GAAGGCTAGGTTTCGTGGTT+GGG | - | chr3_4:65020111-65020130 | Msa0514340:intron | 50.0% | |
| AAGGCTAGGTTTCGTGGTTG+GGG | - | chr3_4:65020112-65020131 | Msa0514340:intron | 50.0% | |
| ACAGTGGTTGTTGGTCCTAG+TGG | - | chr3_4:65020211-65020230 | Msa0514340:intron | 50.0% | |
| GTTGTTGGTCCTAGTGGAGT+TGG | - | chr3_4:65020217-65020236 | Msa0514340:intron | 50.0% | |
| CTAGACTTCCCAACTCCACT+AGG | + | chr3_4:65020229-65020248 | None:intergenic | 50.0% | |
| TTGAAACCTCTGCAACTCGC+TGG | + | chr3_4:65020437-65020456 | None:intergenic | 50.0% | |
| GTTTCAACAAGAAGCGGCAG+AGG | - | chr3_4:65020450-65020469 | Msa0514340:intron | 50.0% | |
| CTGCTTCCATTATCTGGAGG+GGG | - | chr3_4:65020498-65020517 | Msa0514340:intron | 50.0% | |
| TGCTTGCATCTTGGTGAACC+TGG | - | chr3_4:65020745-65020764 | Msa0514340:intron | 50.0% | |
| ACCTGGTTGCATTGTGAAGG+GGG | - | chr3_4:65020762-65020781 | Msa0514340:intron | 50.0% | |
| GTTGCATTGTGAAGGGGGAT+TGG | - | chr3_4:65020767-65020786 | Msa0514340:intron | 50.0% | |
| ACCCAGAGATACAAGCCGAA+AGG | + | chr3_4:65021489-65021508 | None:intergenic | 50.0% | |
| GGGTCAAGTGAGTTCCCATT+AGG | - | chr3_4:65021505-65021524 | Msa0514340:exon | 50.0% | |
| GGGAACTCACTTGACCCTAA+TGG | + | chr3_4:65021523-65021542 | None:intergenic | 50.0% | |
| ! | GAAGTGGTGGAGAAGTCGAG+GGG | + | chr3_4:65018489-65018508 | None:intergenic | 55.0% |
| ! | GGAAGTGGTGGAGAAGTCGA+GGG | + | chr3_4:65018490-65018509 | None:intergenic | 55.0% |
| ! | TTTGGAAGTGGCGGAAGTGG+TGG | + | chr3_4:65018502-65018521 | None:intergenic | 55.0% |
| TGGCGGAGATTTGGAAGTGG+CGG | + | chr3_4:65018511-65018530 | None:intergenic | 55.0% | |
| GGAGAGAATTGGAGCGAGAG+AGG | + | chr3_4:65018606-65018625 | None:intergenic | 55.0% | |
| AGAGAGGGGGGATTTCTTCG+CGG | + | chr3_4:65018628-65018647 | None:intergenic | 55.0% | |
| AGGTTCCGGAAGGTTGTGGT+TGG | + | chr3_4:65018712-65018731 | None:intergenic | 55.0% | |
| TGGAAGGTTCCGGAAGGTTG+TGG | + | chr3_4:65018716-65018735 | None:intergenic | 55.0% | |
| !! | AGAAGCGTCGTGGAAGGTTC+CGG | + | chr3_4:65018726-65018745 | None:intergenic | 55.0% |
| TTCCACGACGCTTCTTCCTC+CGG | - | chr3_4:65018731-65018750 | Msa0514340:intron | 55.0% | |
| GCATAGCAGTTCAGCTCCTC+CGG | + | chr3_4:65018753-65018772 | None:intergenic | 55.0% | |
| ! | CCTAGCCTTCCAGGAATCCA+TGG | + | chr3_4:65020101-65020120 | None:intergenic | 55.0% |
| CCATGGATTCCTGGAAGGCT+AGG | - | chr3_4:65020098-65020117 | Msa0514340:intron | 55.0% | |
| TCCTGGAAGGCTAGGTTTCG+TGG | - | chr3_4:65020106-65020125 | Msa0514340:intron | 55.0% | |
| ! | ACCACGAAACCTAGCCTTCC+AGG | + | chr3_4:65020110-65020129 | None:intergenic | 55.0% |
| GGAAGGCTAGGTTTCGTGGT+TGG | - | chr3_4:65020110-65020129 | Msa0514340:intron | 55.0% | |
| TCCCCCTTCACAATGCAACC+AGG | + | chr3_4:65020766-65020785 | None:intergenic | 55.0% | |
| ! | CGGAAGTGGTGGAGAAGTCG+AGG | + | chr3_4:65018491-65018510 | None:intergenic | 60.0% |
| GAGAGGGGGGATTTCTTCGC+GGG | + | chr3_4:65018627-65018646 | None:intergenic | 60.0% | |
| CTTGGGATTCGGAGAGAGGG+GGG | + | chr3_4:65018640-65018659 | None:intergenic | 60.0% | |
| GCTTGGGATTCGGAGAGAGG+GGG | + | chr3_4:65018641-65018660 | None:intergenic | 60.0% | |
| GGCTTGGGATTCGGAGAGAG+GGG | + | chr3_4:65018642-65018661 | None:intergenic | 60.0% | |
| ! | CGGCTTGGGATTCGGAGAGA+GGG | + | chr3_4:65018643-65018662 | None:intergenic | 60.0% |
| ! | ACGGCTTGGGATTCGGAGAG+AGG | + | chr3_4:65018644-65018663 | None:intergenic | 60.0% |
| CTCTCCGAATCCCAAGCCGT+CGG | - | chr3_4:65018644-65018663 | Msa0514340:CDS | 60.0% | |
| !! | GGAGGAAGAAGCGTCGTGGA+AGG | + | chr3_4:65018732-65018751 | None:intergenic | 60.0% |
| TAGCAGTTCAGCTCCTCCGG+AGG | + | chr3_4:65018750-65018769 | None:intergenic | 60.0% | |
| TGACGACCAGCGAGTTGCAG+AGG | - | chr3_4:65020428-65020447 | Msa0514340:intron | 60.0% | |
| GAGGACTGAGCGAGCGAGAG+AGG | + | chr3_4:65018313-65018332 | None:intergenic | 65.0% | |
| CATCATCCGCCACCACCGCA+CGG | - | chr3_4:65018451-65018470 | Msa0514340:three_prime_UTR | 65.0% | |
| ! | GTGGTGGAGAAGTCGAGGGG+CGG | + | chr3_4:65018486-65018505 | None:intergenic | 65.0% |
| ! | GACGCCGACGGCTTGGGATT+CGG | + | chr3_4:65018651-65018670 | None:intergenic | 65.0% |
| GGAAGAAGCGACGACGCCGA+CGG | + | chr3_4:65018663-65018682 | None:intergenic | 65.0% | |
| GCGTCGTGGAAGGTTCCGGA+AGG | + | chr3_4:65018722-65018741 | None:intergenic | 65.0% | |
| !! | CTCCGGAGGAAGAAGCGTCG+TGG | + | chr3_4:65018736-65018755 | None:intergenic | 65.0% |
| CACGACGCTTCTTCCTCCGG+AGG | - | chr3_4:65018734-65018753 | Msa0514340:intron | 65.0% | |
| !! | CGTGCGGTGGTGGCGGATGA+TGG | + | chr3_4:65018453-65018472 | None:intergenic | 70.0% |
| GTGGAGAAGTCGAGGGGCGG+CGG | + | chr3_4:65018483-65018502 | None:intergenic | 70.0% | |
| AGCGACGACGCCGACGGCTT+GGG | + | chr3_4:65018657-65018676 | None:intergenic | 70.0% | |
| AAGCGACGACGCCGACGGCT+TGG | + | chr3_4:65018658-65018677 | None:intergenic | 70.0% | |
| CATCCGCCACCACCGCACGG+TGG | - | chr3_4:65018454-65018473 | Msa0514340:three_prime_UTR | 75.0% | |
| ! | TGGCCACCGTGCGGTGGTGG+CGG | + | chr3_4:65018460-65018479 | None:intergenic | 75.0% |
| GAGAAGTCGAGGGGCGGCGG+TGG | + | chr3_4:65018480-65018499 | None:intergenic | 75.0% | |
| ! | CGGTGGCCACCGTGCGGTGG+TGG | + | chr3_4:65018463-65018482 | None:intergenic | 80.0% |
| ! | CGGCGGTGGCCACCGTGCGG+TGG | + | chr3_4:65018466-65018485 | None:intergenic | 85.0% |
| ! | GGGCGGCGGTGGCCACCGTG+CGG | + | chr3_4:65018469-65018488 | None:intergenic | 85.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_4 | gene | 65018206 | 65021742 | 65018206 | ID=Msa0514340;Name=Msa0514340 |
| chr3_4 | mRNA | 65018206 | 65021742 | 65018206 | ID=Msa0514340-mRNA-1;Parent=Msa0514340;Name=Msa0514340-mRNA-1;_AED=0.09;_eAED=0.09;_QI=225|1|1|1|1|1|5|306|471 |
| chr3_4 | exon | 65018206 | 65018683 | 65018206 | ID=Msa0514340-mRNA-1:exon:16486;Parent=Msa0514340-mRNA-1 |
| chr3_4 | exon | 65019061 | 65019254 | 65019061 | ID=Msa0514340-mRNA-1:exon:16485;Parent=Msa0514340-mRNA-1 |
| chr3_4 | exon | 65019346 | 65019540 | 65019346 | ID=Msa0514340-mRNA-1:exon:16484;Parent=Msa0514340-mRNA-1 |
| chr3_4 | exon | 65019630 | 65019851 | 65019630 | ID=Msa0514340-mRNA-1:exon:16483;Parent=Msa0514340-mRNA-1 |
| chr3_4 | exon | 65020885 | 65021742 | 65020885 | ID=Msa0514340-mRNA-1:exon:16482;Parent=Msa0514340-mRNA-1 |
| chr3_4 | five_prime_UTR | 65021518 | 65021742 | 65021518 | ID=Msa0514340-mRNA-1:five_prime_utr;Parent=Msa0514340-mRNA-1 |
| chr3_4 | CDS | 65020885 | 65021517 | 65020885 | ID=Msa0514340-mRNA-1:cds;Parent=Msa0514340-mRNA-1 |
| chr3_4 | CDS | 65019630 | 65019851 | 65019630 | ID=Msa0514340-mRNA-1:cds;Parent=Msa0514340-mRNA-1 |
| chr3_4 | CDS | 65019346 | 65019540 | 65019346 | ID=Msa0514340-mRNA-1:cds;Parent=Msa0514340-mRNA-1 |
| chr3_4 | CDS | 65019061 | 65019254 | 65019061 | ID=Msa0514340-mRNA-1:cds;Parent=Msa0514340-mRNA-1 |
| chr3_4 | CDS | 65018512 | 65018683 | 65018512 | ID=Msa0514340-mRNA-1:cds;Parent=Msa0514340-mRNA-1 |
| chr3_4 | three_prime_UTR | 65018206 | 65018511 | 65018206 | ID=Msa0514340-mRNA-1:three_prime_utr;Parent=Msa0514340-mRNA-1 |
| Gene Sequence |
| Protein sequence |
