AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0621670


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0621670 MtrunA17_Chr2g0322321 96.667 270 9 0 1 270 1 270 0.0 536
Msa0621670 MtrunA17_Chr1g0154381 39.370 254 151 3 9 262 44 294 7.86e-57 190
Msa0621670 MtrunA17_Chr4g0034141 36.364 264 161 4 12 271 1 261 1.04e-50 173
Msa0621670 MtrunA17_Chr3g0141271 38.934 244 145 4 20 262 88 328 2.63e-50 173
Msa0621670 MtrunA17_Chr1g0162571 38.735 253 149 4 22 270 14 264 2.87e-50 172
Msa0621670 MtrunA17_Chr1g0162581 35.200 250 150 5 10 252 6 250 1.65e-45 153
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0621670 AT4G15440.1 53.846 169 77 1 101 268 1 169 5.01e-60 195
Msa0621670 AT5G42650.1 38.023 263 160 2 10 272 39 298 7.08e-54 182

Find 85 sgRNAs with CRISPR-Local

Find 240 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAGACAGGTTAGATTATTTC+TGG 0.141000 4_2:-73918530 Msa0621670:CDS
TTGAATTTACGGGAAATATT+AGG 0.183729 4_2:-73918299 Msa0621670:CDS
GGAGCCTGATTCGGCGATTT+TGG 0.224744 4_2:+73915328 None:intergenic
TTTCTCTCACCTCTTTGATA+TGG 0.280521 4_2:-73918370 Msa0621670:CDS
TGTTCCTAGTGTTGAATTTA+CGG 0.291492 4_2:-73918310 Msa0621670:CDS
TCAAGAACTGCAATAATATT+AGG 0.294757 4_2:+73918402 None:intergenic
TGAAGCAAAGTTCAAGCATA+TGG 0.300137 4_2:-73915505 Msa0621670:CDS
GCTACCGATCCGGCAGATTC+CGG 0.308018 4_2:-73918586 Msa0621670:CDS
TTAACATTACGACATTCTTA+TGG 0.312600 4_2:+73918872 None:intergenic
TGAATTTACGGGAAATATTA+GGG 0.330709 4_2:-73918298 Msa0621670:CDS
GACGGTGGTGGTATCGGTGG+TGG 0.334671 4_2:+73918642 None:intergenic
ACTTTGCTTCAAAATGTTCA+TGG 0.334862 4_2:+73915517 None:intergenic
TAGACAGTGTTGCTTCAATT+TGG 0.347494 4_2:+73915444 None:intergenic
TCCAGGTTTGATATCAGTTC+TGG 0.348706 4_2:+73915479 None:intergenic
AGCTCCGTTGGCCTTGCTTT+CGG 0.351852 4_2:+73918606 None:intergenic
AATGGCCATCCGTGGCTTCC+CGG 0.370701 4_2:+73918567 None:intergenic
GTTCCTAGTGTTGAATTTAC+GGG 0.375540 4_2:-73918309 Msa0621670:CDS
GATCCCAAAATCGCCGAATC+AGG 0.380571 4_2:-73915332 Msa0621670:CDS
ATAATCTAACCTGTCTGATA+AGG 0.382700 4_2:+73918536 None:intergenic
TTGCTTTCGGTGGAGTTGCT+AGG 0.382888 4_2:+73918619 None:intergenic
CTACCGATCCGGCAGATTCC+GGG 0.403146 4_2:-73918585 Msa0621670:CDS
TAATCTAACCTGTCTGATAA+GGG 0.445035 4_2:+73918537 None:intergenic
TCTGTGGAGGTCACACGTTA+TGG 0.447609 4_2:+73918697 None:intergenic
GGATTCACGTTGGTGAAGAA+AGG 0.453342 4_2:+73918423 None:intergenic
CATAAGGGTAAGAGAAGGAA+TGG 0.459434 4_2:+73915222 None:intergenic
GACAAAAGAGATGTTCTAGT+TGG 0.460373 4_2:-73918339 Msa0621670:CDS
GAAGCAAAGTTCAAGCATAT+GGG 0.463109 4_2:-73915504 Msa0621670:CDS
GCTAGGGACGGTGGTGGTAT+CGG 0.463818 4_2:+73918636 None:intergenic
TGCTTTCGGTGGAGTTGCTA+GGG 0.468309 4_2:+73918620 None:intergenic
ATCAAGGGAAGGATCGGCTC+TGG 0.474506 4_2:+73915352 None:intergenic
GGAAGATTTCTTCGAGTGGT+TGG 0.477327 4_2:+73915246 None:intergenic
TACCCTTATGCTCTTGTCAG+TGG 0.477774 4_2:-73915209 Msa0621670:CDS
TCTCCACTGACAAGAGCATA+AGG 0.482167 4_2:+73915206 None:intergenic
GAGCATGGAGGAGCCTGATT+CGG 0.489708 4_2:+73915319 None:intergenic
GGCCAACGGAGCTACCGATC+CGG 0.494027 4_2:-73918596 Msa0621670:CDS
GCTCCTCCATGCTCAACAAA+TGG 0.496661 4_2:-73915310 Msa0621670:CDS
CTCTGGCAAGTACTTTGCTT+AGG 0.499755 4_2:+73915369 None:intergenic
TGCGAGCCATTTGTTGAGCA+TGG 0.501636 4_2:+73915304 None:intergenic
CGTGGCTTCCCGGAATCTGC+CGG 0.503229 4_2:+73918577 None:intergenic
TGCTAGGTCCCTTATCAGAC+AGG 0.504652 4_2:-73918545 Msa0621670:CDS
GATTTCTTCGAGTGGTTGGA+TGG 0.511395 4_2:+73915250 None:intergenic
TGCCGGATCGGTAGCTCCGT+TGG 0.513185 4_2:+73918594 None:intergenic
TTCGGTGGAGTTGCTAGGGA+CGG 0.513266 4_2:+73918624 None:intergenic
TTTACGGGAAATATTAGGGT+TGG 0.514210 4_2:-73918294 Msa0621670:CDS
ACGGTGGTGGTATCGGTGGT+GGG 0.518078 4_2:+73918643 None:intergenic
GATTCACGTTGGTGAAGAAA+GGG 0.521739 4_2:+73918424 None:intergenic
GTGAACAGAAATTTCTGCAG+TGG 0.528197 4_2:+73915395 None:intergenic
TCCGTTGGCCTTGCTTTCGG+TGG 0.541082 4_2:+73918609 None:intergenic
AAGGGTAAGAGAAGGAATGG+AGG 0.542938 4_2:+73915225 None:intergenic
AGCCACGGATGGCCATTGCT+AGG 0.543267 4_2:-73918561 Msa0621670:CDS
CTTCCCGGAATCTGCCGGAT+CGG 0.543367 4_2:+73918582 None:intergenic
AGGGACGGTGGTGGTATCGG+TGG 0.543609 4_2:+73918639 None:intergenic
TTCTGAACCTCAACATGCTA+AGG 0.543924 4_2:-73918256 Msa0621670:intron
GTTGTTTAATGAAGTTGTAG+AGG 0.549200 4_2:+73915174 None:intergenic
TGAACAGAAATTTCTGCAGT+GGG 0.551534 4_2:+73915396 None:intergenic
GGAGTTGCTAGGGACGGTGG+TGG 0.552416 4_2:+73918630 None:intergenic
TTTGGGATCAAGGGAAGGAT+CGG 0.552953 4_2:+73915346 None:intergenic
ACCAGAACTGATATCAAACC+TGG 0.557853 4_2:-73915480 Msa0621670:CDS
AAGAAGAGAAGAGAGTTCTG+TGG 0.560949 4_2:+73918681 None:intergenic
TTTCCCGTAAATTCAACACT+AGG 0.562457 4_2:+73918306 None:intergenic
CGGCAGATTCCGGGAAGCCA+CGG 0.563660 4_2:-73918576 Msa0621670:CDS
CTCCACTGACAAGAGCATAA+GGG 0.568207 4_2:+73915207 None:intergenic
AGTGGTACCTTAGCATGTTG+AGG 0.575238 4_2:+73918249 None:intergenic
TGGAGGAAGATTTCTTCGAG+TGG 0.578582 4_2:+73915242 None:intergenic
AGGGAACGTGGGTGGAACAT+TGG 0.578719 4_2:+73918443 None:intergenic
AAGAGCATAAGGGTAAGAGA+AGG 0.584245 4_2:+73915217 None:intergenic
TAGCAACTCCACCGAAAGCA+AGG 0.588271 4_2:-73918617 Msa0621670:CDS
GGTGGAGTTGCTAGGGACGG+TGG 0.594020 4_2:+73918627 None:intergenic
AGTAACTTTACTATCTATCA+CGG 0.603195 4_2:-73918839 Msa0621670:five_prime_UTR
TCTGATAAGGGACCTAGCAA+TGG 0.603682 4_2:+73918549 None:intergenic
AGATTCCGGGAAGCCACGGA+TGG 0.603980 4_2:-73918572 Msa0621670:CDS
TATCGGTGGTGGGAGTGACA+TGG 0.613140 4_2:+73918653 None:intergenic
TCCACCGAAAGCAAGGCCAA+CGG 0.616945 4_2:-73918610 Msa0621670:CDS
ACGTGGGTGGAACATTGGTA+CGG 0.634090 4_2:+73918448 None:intergenic
GACCTAGCAATGGCCATCCG+TGG 0.636484 4_2:+73918559 None:intergenic
GTGAAGAAAGGGAACGTGGG+TGG 0.642657 4_2:+73918435 None:intergenic
CAACAAGGTCCATATCAAAG+AGG 0.642799 4_2:+73918361 None:intergenic
AAGAGAAGAGAGTTCTGTGG+AGG 0.645941 4_2:+73918684 None:intergenic
AATAATATTAGGATTCACGT+TGG 0.648803 4_2:+73918413 None:intergenic
GTTGGTGAAGAAAGGGAACG+TGG 0.649752 4_2:+73918431 None:intergenic
TACAACTTCATTAAACAACA+TGG 0.659594 4_2:-73915170 Msa0621670:CDS
ATGGTGCCAACACTCACAGT+CGG 0.699929 4_2:+73915269 None:intergenic
GAGCCATTTGTTGAGCATGG+AGG 0.708844 4_2:+73915307 None:intergenic
TTGGTGAAGAAAGGGAACGT+GGG 0.709718 4_2:+73918432 None:intergenic
GAACAGAAATTTCTGCAGTG+GGG 0.775291 4_2:+73915397 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! CAATAACTATTTTTTTTATA+AGG - chr4_2:73916538-73916557 Msa0621670:intron 10.0%
!! TTTACTTGATTTATTATTTA+AGG - chr4_2:73916904-73916923 Msa0621670:intron 10.0%
!!! TTTCTAGTTAAAAAATTTAA+CGG - chr4_2:73916961-73916980 Msa0621670:intron 10.0%
!!! ATTATTTATTGTACTTTTTT+CGG - chr4_2:73917032-73917051 Msa0621670:intron 10.0%
!!! TATTATATTTTGACAAAAAT+TGG - chr4_2:73917126-73917145 Msa0621670:intron 10.0%
!! CTTTCATAAATTAAATTAAA+TGG - chr4_2:73917472-73917491 Msa0621670:intron 10.0%
!!! ATTTCAATAAAAATTTTGTT+TGG + chr4_2:73917533-73917552 None:intergenic 10.0%
!!! TTCTTTAAACATATTATTTT+TGG - chr4_2:73918097-73918116 Msa0621670:intron 10.0%
!!! ATAAGTCTATGATTTTTATT+AGG - chr4_2:73916298-73916317 Msa0621670:intron 15.0%
!! TATCAAAAAAACATTATGTA+CGG - chr4_2:73916362-73916381 Msa0621670:intron 15.0%
!! TTAAAATGATATGTTAATAG+TGG + chr4_2:73916669-73916688 None:intergenic 15.0%
!! GACTATTTATTATAAATTCA+AGG - chr4_2:73916765-73916784 Msa0621670:intron 15.0%
!!! TTATTTTCAAATTTTAGTGA+TGG - chr4_2:73917172-73917191 Msa0621670:intron 15.0%
!!! TATTTTCAAATTTTAGTGAT+GGG - chr4_2:73917173-73917192 Msa0621670:intron 15.0%
!!! GATTTTAAAATAATTTGTAG+GGG + chr4_2:73917235-73917254 None:intergenic 15.0%
!!! GGATTTTAAAATAATTTGTA+GGG + chr4_2:73917236-73917255 None:intergenic 15.0%
!!! TGGATTTTAAAATAATTTGT+AGG + chr4_2:73917237-73917256 None:intergenic 15.0%
!!! AATGTTTTTACATTACAATA+CGG + chr4_2:73917645-73917664 None:intergenic 15.0%
!! ATGATTAATAAGTAAACTAA+AGG - chr4_2:73917686-73917705 Msa0621670:intron 15.0%
!!! AATTGATAGAAAGATTTTTT+TGG - chr4_2:73918028-73918047 Msa0621670:intron 15.0%
!! TGCAATATTGTAATTAAAAT+TGG + chr4_2:73918403-73918422 None:intergenic 15.0%
!!! GTCGTAATGTTAATTTTTTT+AGG - chr4_2:73915193-73915212 Msa0621670:CDS 20.0%
!! TTTCTCCTCTATTAAAAAAA+AGG - chr4_2:73915309-73915328 Msa0621670:CDS 20.0%
!!! TTTTGCCTTTTTTTTAATAG+AGG + chr4_2:73915317-73915336 None:intergenic 20.0%
!! ATCAAAAGAAATAAGAAAGT+AGG + chr4_2:73915841-73915860 None:intergenic 20.0%
!! AAAATGACAAGGAAAATTTA+TGG + chr4_2:73915976-73915995 None:intergenic 20.0%
!!! TTCTTTTGTTAGTAATTGTA+TGG + chr4_2:73916066-73916085 None:intergenic 20.0%
!! AATGACATCTTACATATTTA+AGG - chr4_2:73916130-73916149 Msa0621670:intron 20.0%
!!! ATATGAATGTTTTCAATGAT+AGG - chr4_2:73916209-73916228 Msa0621670:intron 20.0%
!! ATAGGATAGTTATGATTAAT+TGG - chr4_2:73916227-73916246 Msa0621670:intron 20.0%
!! TTATGAAATATTAATCTGCA+TGG - chr4_2:73916338-73916357 Msa0621670:intron 20.0%
!! TATGAAATATTAATCTGCAT+GGG - chr4_2:73916339-73916358 Msa0621670:intron 20.0%
!! ATCAAAAAAACATTATGTAC+GGG - chr4_2:73916363-73916382 Msa0621670:intron 20.0%
!!! AAGATATTTTTGTTATCGTA+TGG - chr4_2:73916846-73916865 Msa0621670:intron 20.0%
!!! TTTTTTTCCGACAAAATTTA+AGG - chr4_2:73916937-73916956 Msa0621670:intron 20.0%
!!! TAGAAAACCTTAAATTTTGT+CGG + chr4_2:73916947-73916966 None:intergenic 20.0%
!! TAGTTAAAAAATTTAACGGT+AGG - chr4_2:73916965-73916984 Msa0621670:intron 20.0%
!!! ATTTTCAAATTTTAGTGATG+GGG - chr4_2:73917174-73917193 Msa0621670:intron 20.0%
!! ATTGACAAAAATGGTAAAAT+TGG + chr4_2:73917257-73917276 None:intergenic 20.0%
!!! TTTAATTTATGAAAGAACCA+AGG + chr4_2:73917467-73917486 None:intergenic 20.0%
!!! ATCATAGATCAATTTCATTT+TGG - chr4_2:73917588-73917607 Msa0621670:intron 20.0%
!!! TCATAGATCAATTTCATTTT+GGG - chr4_2:73917589-73917608 Msa0621670:intron 20.0%
!!! ATGTTTTTACATTACAATAC+GGG + chr4_2:73917644-73917663 None:intergenic 20.0%
!! AAGAATCAGAAAAATTGAAA+TGG - chr4_2:73917740-73917759 Msa0621670:intron 20.0%
!!! AATTTTACCCTTTATATCAT+TGG + chr4_2:73917812-73917831 None:intergenic 20.0%
!! AAAAAAATTGAAAAGTTGTG+AGG + chr4_2:73918077-73918096 None:intergenic 20.0%
! TTAACATTACGACATTCTTA+TGG + chr4_2:73915186-73915205 None:intergenic 25.0%
! AGTAACTTTACTATCTATCA+CGG - chr4_2:73915216-73915235 Msa0621670:CDS 25.0%
!!! GTTATGGTTATGTTTTGATT+TGG + chr4_2:73915345-73915364 None:intergenic 25.0%
! AATAATATTAGGATTCACGT+TGG + chr4_2:73915645-73915664 None:intergenic 25.0%
! TCAAGAACTGCAATAATATT+AGG + chr4_2:73915656-73915675 None:intergenic 25.0%
! TTGAATTTACGGGAAATATT+AGG - chr4_2:73915756-73915775 Msa0621670:intron 25.0%
! TGAATTTACGGGAAATATTA+GGG - chr4_2:73915757-73915776 Msa0621670:intron 25.0%
! AAAAGAAATAAGAAAGTAGG+TGG + chr4_2:73915838-73915857 None:intergenic 25.0%
! ATTTGAACAACAAAATGACA+AGG + chr4_2:73915987-73916006 None:intergenic 25.0%
!!! CAAATGTATCTTTAGTTTGT+CGG - chr4_2:73916002-73916021 Msa0621670:intron 25.0%
! TATTAGGAAAATTATGTCGA+AGG - chr4_2:73916314-73916333 Msa0621670:intron 25.0%
! CTGAGACAAATTGTAAAAAA+AGG - chr4_2:73916387-73916406 Msa0621670:intron 25.0%
!! CATAGATCAATTTCATTTTG+GGG - chr4_2:73917590-73917609 Msa0621670:intron 25.0%
! GTGAAATCCAATGATATAAA+GGG - chr4_2:73917802-73917821 Msa0621670:intron 25.0%
!! AGATTTTCTTCTTACTTGTA+GGG - chr4_2:73917833-73917852 Msa0621670:intron 25.0%
! TCGAGAGATTTCAAATAATA+CGG + chr4_2:73917982-73918001 None:intergenic 25.0%
! AATCTTTCTATCAATTGTCA+TGG + chr4_2:73918024-73918043 None:intergenic 25.0%
!! AACTTTATTTGCGAGTTTAA+AGG - chr4_2:73918149-73918168 Msa0621670:intron 25.0%
!! ACTTTATTTGCGAGTTTAAA+GGG - chr4_2:73918150-73918169 Msa0621670:intron 25.0%
! CAATATTGCATAATATTCAG+AGG - chr4_2:73918413-73918432 Msa0621670:CDS 25.0%
!! ATATGACTGTATTTCTATTG+TGG + chr4_2:73918445-73918464 None:intergenic 25.0%
! TACAACTTCATTAAACAACA+TGG - chr4_2:73918885-73918904 Msa0621670:five_prime_UTR 25.0%
!!! GGTTATGTTTTGATTTGGTT+TGG + chr4_2:73915340-73915359 None:intergenic 30.0%
TAATCTAACCTGTCTGATAA+GGG + chr4_2:73915521-73915540 None:intergenic 30.0%
ATAATCTAACCTGTCTGATA+AGG + chr4_2:73915522-73915541 None:intergenic 30.0%
!!! AAACTTTTTCAGAACACGAA+TGG - chr4_2:73915562-73915581 Msa0621670:intron 30.0%
! TGTTCCTAGTGTTGAATTTA+CGG - chr4_2:73915745-73915764 Msa0621670:intron 30.0%
TTTGCAGTTTCATACATTCA+TGG + chr4_2:73915948-73915967 None:intergenic 30.0%
GAGATATTATTTCAACTGCA+TGG + chr4_2:73916510-73916529 None:intergenic 30.0%
!! TTTTTGTTATCGTATGGACT+AGG - chr4_2:73916852-73916871 Msa0621670:intron 30.0%
GTGAAGTCAATTGACAAAAA+TGG + chr4_2:73917266-73917285 None:intergenic 30.0%
ACAGAAAATGTATTCTGTAG+GGG + chr4_2:73917290-73917309 None:intergenic 30.0%
CACAGAAAATGTATTCTGTA+GGG + chr4_2:73917291-73917310 None:intergenic 30.0%
GAGATTTATTCACAAATACC+AGG + chr4_2:73917324-73917343 None:intergenic 30.0%
ATTTGTACCAACATAGTTAC+AGG + chr4_2:73917413-73917432 None:intergenic 30.0%
! AACAGCTTTGTAGAATAAAG+AGG - chr4_2:73917564-73917583 Msa0621670:intron 30.0%
TACAATACGGGAAAGAATAA+TGG + chr4_2:73917632-73917651 None:intergenic 30.0%
ATTCGTAGATGCAAAATTGA+AGG - chr4_2:73917662-73917681 Msa0621670:intron 30.0%
CAGAAAAATTGAAATGGTGA+AGG - chr4_2:73917746-73917765 Msa0621670:intron 30.0%
GGTGAAATCCAATGATATAA+AGG - chr4_2:73917801-73917820 Msa0621670:intron 30.0%
! GAGATTTTCTTCTTACTTGT+AGG - chr4_2:73917832-73917851 Msa0621670:intron 30.0%
! GATTTTCTTCTTACTTGTAG+GGG - chr4_2:73917834-73917853 Msa0621670:intron 30.0%
AGTATAAGTGTATGGGTATA+TGG - chr4_2:73917861-73917880 Msa0621670:intron 30.0%
ATGGTATAATTTCCTAGTGA+TGG - chr4_2:73917880-73917899 Msa0621670:intron 30.0%
CAAAATATCCCATTGTTTCA+AGG - chr4_2:73917914-73917933 Msa0621670:intron 30.0%
AATACAAGCCTTGAAACAAT+GGG + chr4_2:73917925-73917944 None:intergenic 30.0%
AAATACAAGCCTTGAAACAA+TGG + chr4_2:73917926-73917945 None:intergenic 30.0%
CGAGAGATTTCAAATAATAC+GGG + chr4_2:73917981-73918000 None:intergenic 30.0%
! TATTTGAAATCTCTCGACTT+TGG - chr4_2:73917985-73918004 Msa0621670:intron 30.0%
! TCTCGACTTTGGTATATTTT+TGG - chr4_2:73917996-73918015 Msa0621670:intron 30.0%
! CTCGACTTTGGTATATTTTT+GGG - chr4_2:73917997-73918016 Msa0621670:intron 30.0%
AAATTGAAAAGTTGTGAGGA+TGG + chr4_2:73918073-73918092 None:intergenic 30.0%
! CTTTATTTGCGAGTTTAAAG+GGG - chr4_2:73918151-73918170 Msa0621670:intron 30.0%
TTAGTAAAAGGAAGGAGTAA+AGG - chr4_2:73918186-73918205 Msa0621670:intron 30.0%
! TGAGTTGACATAAAAACTCT+AGG - chr4_2:73918244-73918263 Msa0621670:intron 30.0%
GAGTTGACATAAAAACTCTA+GGG - chr4_2:73918245-73918264 Msa0621670:intron 30.0%
AAATGTTTCCGAAAACCAAA+CGG + chr4_2:73918272-73918291 None:intergenic 30.0%
! CTGTATTTCTATTGTGGATT+AGG + chr4_2:73918439-73918458 None:intergenic 30.0%
ACTTTGCTTCAAAATGTTCA+TGG + chr4_2:73918541-73918560 None:intergenic 30.0%
! ATCAAACCTGGACATATTTT+TGG - chr4_2:73918587-73918606 Msa0621670:CDS 30.0%
GTTGTTTAATGAAGTTGTAG+AGG + chr4_2:73918884-73918903 None:intergenic 30.0%
CAGACAGGTTAGATTATTTC+TGG - chr4_2:73915525-73915544 Msa0621670:CDS 35.0%
!!! TGAAAAAGTTTTCTGGCTTC+TGG + chr4_2:73915553-73915572 None:intergenic 35.0%
!!! CGTGTTCTGAAAAAGTTTTC+TGG + chr4_2:73915560-73915579 None:intergenic 35.0%
TTTCTCTCACCTCTTTGATA+TGG - chr4_2:73915685-73915704 Msa0621670:intron 35.0%
! GAACATCTCTTTTGTCAACA+AGG + chr4_2:73915712-73915731 None:intergenic 35.0%
GACAAAAGAGATGTTCTAGT+TGG - chr4_2:73915716-73915735 Msa0621670:intron 35.0%
! GTTCCTAGTGTTGAATTTAC+GGG - chr4_2:73915746-73915765 Msa0621670:intron 35.0%
TTTCCCGTAAATTCAACACT+AGG + chr4_2:73915752-73915771 None:intergenic 35.0%
TTTACGGGAAATATTAGGGT+TGG - chr4_2:73915761-73915780 Msa0621670:intron 35.0%
TTATGAACTTTCTGACTCAG+TGG - chr4_2:73915894-73915913 Msa0621670:intron 35.0%
GTGTAAGTTGTCACTATATC+TGG + chr4_2:73916992-73917011 None:intergenic 35.0%
! AGTATAAGTGTAGGGGTATA+TGG + chr4_2:73917208-73917227 None:intergenic 35.0%
GCACAGAAAATGTATTCTGT+AGG + chr4_2:73917292-73917311 None:intergenic 35.0%
! CACAAATACCAGGAAACTTT+TGG + chr4_2:73917314-73917333 None:intergenic 35.0%
ATCCATTAATTACAACGCCT+TGG - chr4_2:73917447-73917466 Msa0621670:intron 35.0%
!! AACCAAGGCGTTGTAATTAA+TGG + chr4_2:73917452-73917471 None:intergenic 35.0%
AATTGAAATGGTGAAGGAGA+AGG - chr4_2:73917752-73917771 Msa0621670:intron 35.0%
!! AGAGATGGAATCAGTTTTGT+GGG - chr4_2:73917778-73917797 Msa0621670:intron 35.0%
! GGGTGAAAGTATAAGTGTAT+GGG - chr4_2:73917854-73917873 Msa0621670:intron 35.0%
! TGGGATATTTTGCTTGTTTG+TGG + chr4_2:73917906-73917925 None:intergenic 35.0%
AAAACACACCACCATAATCT+AGG + chr4_2:73917956-73917975 None:intergenic 35.0%
! AGGAGAGGACTTTTAGTAAA+AGG - chr4_2:73918174-73918193 Msa0621670:intron 35.0%
! GAGGACTTTTAGTAAAAGGA+AGG - chr4_2:73918178-73918197 Msa0621670:intron 35.0%
AAGGAAGGAGTAAAGGAAAA+TGG - chr4_2:73918193-73918212 Msa0621670:intron 35.0%
TCAACTCATACTCAAGTTAG+GGG + chr4_2:73918232-73918251 None:intergenic 35.0%
GTCAACTCATACTCAAGTTA+GGG + chr4_2:73918233-73918252 None:intergenic 35.0%
TGTCAACTCATACTCAAGTT+AGG + chr4_2:73918234-73918253 None:intergenic 35.0%
GAAAATATCGATAACGTGCT+TGG - chr4_2:73918372-73918391 Msa0621670:CDS 35.0%
TGAAGCAAAGTTCAAGCATA+TGG - chr4_2:73918550-73918569 Msa0621670:CDS 35.0%
GAAGCAAAGTTCAAGCATAT+GGG - chr4_2:73918551-73918570 Msa0621670:CDS 35.0%
TTTGGTCCAAAAATATGTCC+AGG + chr4_2:73918596-73918615 None:intergenic 35.0%
!! TAGACAGTGTTGCTTCAATT+TGG + chr4_2:73918614-73918633 None:intergenic 35.0%
TGAACAGAAATTTCTGCAGT+GGG + chr4_2:73918662-73918681 None:intergenic 35.0%
AAGAAGAGAAGAGAGTTCTG+TGG + chr4_2:73915377-73915396 None:intergenic 40.0%
! GATTCACGTTGGTGAAGAAA+GGG + chr4_2:73915634-73915653 None:intergenic 40.0%
CAACAAGGTCCATATCAAAG+AGG + chr4_2:73915697-73915716 None:intergenic 40.0%
TTCTGAACCTCAACATGCTA+AGG - chr4_2:73915799-73915818 Msa0621670:intron 40.0%
!! TGTTATCGTATGGACTAGGA+TGG - chr4_2:73916856-73916875 Msa0621670:intron 40.0%
! GGGTGAAAGTATAAGTGTAG+GGG + chr4_2:73917215-73917234 None:intergenic 40.0%
! GGGGTGAAAGTATAAGTGTA+GGG + chr4_2:73917853-73917872 None:intergenic 40.0%
! AGGGGTGAAAGTATAAGTGT+AGG + chr4_2:73917852-73917871 None:intergenic 40.0%
TTTCTGTGCCAAAAGTTTCC+TGG - chr4_2:73917303-73917322 Msa0621670:intron 40.0%
ATAATTGGGGAGTTGAACAG+AGG + chr4_2:73917382-73917401 None:intergenic 40.0%
TACAGGCATGGGAGATAATT+GGG + chr4_2:73917396-73917415 None:intergenic 40.0%
TTACAGGCATGGGAGATAAT+TGG + chr4_2:73917397-73917416 None:intergenic 40.0%
ACCAACATAGTTACAGGCAT+GGG + chr4_2:73917407-73917426 None:intergenic 40.0%
TACCAACATAGTTACAGGCA+TGG + chr4_2:73917408-73917427 None:intergenic 40.0%
! GAGAGATGGAATCAGTTTTG+TGG - chr4_2:73917777-73917796 Msa0621670:intron 40.0%
!! GAGATGGAATCAGTTTTGTG+GGG - chr4_2:73917779-73917798 Msa0621670:intron 40.0%
!! AGATGGAATCAGTTTTGTGG+GGG - chr4_2:73917780-73917799 Msa0621670:intron 40.0%
! GGGGTGAAAGTATAAGTGTA+TGG - chr4_2:73917853-73917872 Msa0621670:intron 40.0%
ATTTAGCCCAGCCTAGATTA+TGG - chr4_2:73917942-73917961 Msa0621670:intron 40.0%
AGGATGGAAAGACAAATGTG+TGG + chr4_2:73918057-73918076 None:intergenic 40.0%
TATTTGCGAGTTTAAAGGGG+AGG - chr4_2:73918154-73918173 Msa0621670:intron 40.0%
!! TAAAAACTCTAGGGTCCGTT+TGG - chr4_2:73918254-73918273 Msa0621670:intron 40.0%
TCACGTAGTATACTTCATGC+AGG - chr4_2:73918503-73918522 Msa0621670:CDS 40.0%
ACCAGAACTGATATCAAACC+TGG - chr4_2:73918575-73918594 Msa0621670:CDS 40.0%
TCCAGGTTTGATATCAGTTC+TGG + chr4_2:73918579-73918598 None:intergenic 40.0%
GAACAGAAATTTCTGCAGTG+GGG + chr4_2:73918661-73918680 None:intergenic 40.0%
GTGAACAGAAATTTCTGCAG+TGG + chr4_2:73918663-73918682 None:intergenic 40.0%
CATAAGGGTAAGAGAAGGAA+TGG + chr4_2:73918836-73918855 None:intergenic 40.0%
! AAGAGCATAAGGGTAAGAGA+AGG + chr4_2:73918841-73918860 None:intergenic 40.0%
AAGAGAAGAGAGTTCTGTGG+AGG + chr4_2:73915374-73915393 None:intergenic 45.0%
TCTGATAAGGGACCTAGCAA+TGG + chr4_2:73915509-73915528 None:intergenic 45.0%
TTGGTGAAGAAAGGGAACGT+GGG + chr4_2:73915626-73915645 None:intergenic 45.0%
! GGATTCACGTTGGTGAAGAA+AGG + chr4_2:73915635-73915654 None:intergenic 45.0%
AGTGGTACCTTAGCATGTTG+AGG + chr4_2:73915809-73915828 None:intergenic 45.0%
!! GAAAGTAGGTGGTGTCATAG+TGG + chr4_2:73915827-73915846 None:intergenic 45.0%
!! TATCGTATGGACTAGGATGG+TGG - chr4_2:73916859-73916878 Msa0621670:intron 45.0%
!! ATCGTATGGACTAGGATGGT+GGG - chr4_2:73916860-73916879 Msa0621670:intron 45.0%
CAACTTACACTAGACGCTCA+AGG - chr4_2:73917002-73917021 Msa0621670:intron 45.0%
ACAGGCATGGGAGATAATTG+GGG + chr4_2:73917395-73917414 None:intergenic 45.0%
TCCCATGCCTGTAACTATGT+TGG - chr4_2:73917403-73917422 Msa0621670:intron 45.0%
TGAAGGAGAAGGAAGAGAGA+TGG - chr4_2:73917763-73917782 Msa0621670:intron 45.0%
ACACCACCATAATCTAGGCT+GGG + chr4_2:73917951-73917970 None:intergenic 45.0%
!!! TCTAGGGTCCGTTTGGTTTT+CGG - chr4_2:73918261-73918280 Msa0621670:CDS 45.0%
CTCTGGCAAGTACTTTGCTT+AGG + chr4_2:73918689-73918708 None:intergenic 45.0%
! TTTGGGATCAAGGGAAGGAT+CGG + chr4_2:73918712-73918731 None:intergenic 45.0%
!!! TTCGGCGATTTTGGGATCAA+GGG + chr4_2:73918721-73918740 None:intergenic 45.0%
!!! ATTCGGCGATTTTGGGATCA+AGG + chr4_2:73918722-73918741 None:intergenic 45.0%
!! CTTTTACCGACTGTGAGTGT+TGG - chr4_2:73918780-73918799 Msa0621670:five_prime_UTR 45.0%
GATTTCTTCGAGTGGTTGGA+TGG + chr4_2:73918808-73918827 None:intergenic 45.0%
GGAAGATTTCTTCGAGTGGT+TGG + chr4_2:73918812-73918831 None:intergenic 45.0%
TGGAGGAAGATTTCTTCGAG+TGG + chr4_2:73918816-73918835 None:intergenic 45.0%
AAGGGTAAGAGAAGGAATGG+AGG + chr4_2:73918833-73918852 None:intergenic 45.0%
TACCCTTATGCTCTTGTCAG+TGG - chr4_2:73918846-73918865 Msa0621670:five_prime_UTR 45.0%
! CTCCACTGACAAGAGCATAA+GGG + chr4_2:73918851-73918870 None:intergenic 45.0%
! TCTCCACTGACAAGAGCATA+AGG + chr4_2:73918852-73918871 None:intergenic 45.0%
TCTGTGGAGGTCACACGTTA+TGG + chr4_2:73915361-73915380 None:intergenic 50.0%
TGCTTTCGGTGGAGTTGCTA+GGG + chr4_2:73915438-73915457 None:intergenic 50.0%
TTGCTTTCGGTGGAGTTGCT+AGG + chr4_2:73915439-73915458 None:intergenic 50.0%
TAGCAACTCCACCGAAAGCA+AGG - chr4_2:73915438-73915457 Msa0621670:CDS 50.0%
TGCTAGGTCCCTTATCAGAC+AGG - chr4_2:73915510-73915529 Msa0621670:CDS 50.0%
ACGTGGGTGGAACATTGGTA+CGG + chr4_2:73915610-73915629 None:intergenic 50.0%
! GTTGGTGAAGAAAGGGAACG+TGG + chr4_2:73915627-73915646 None:intergenic 50.0%
GCTTGTTTGTGGCCATCACT+AGG + chr4_2:73917895-73917914 None:intergenic 50.0%
TAGCCCAGCCTAGATTATGG+TGG - chr4_2:73917945-73917964 Msa0621670:intron 50.0%
CACACCACCATAATCTAGGC+TGG + chr4_2:73917952-73917971 None:intergenic 50.0%
!!! GCGATTTTGGGATCAAGGGA+AGG + chr4_2:73918717-73918736 None:intergenic 50.0%
GATCCCAAAATCGCCGAATC+AGG - chr4_2:73918723-73918742 Msa0621670:five_prime_UTR 50.0%
!!! GAGCCTGATTCGGCGATTTT+GGG + chr4_2:73918729-73918748 None:intergenic 50.0%
GCTCCTCCATGCTCAACAAA+TGG - chr4_2:73918745-73918764 Msa0621670:five_prime_UTR 50.0%
! GAGCCATTTGTTGAGCATGG+AGG + chr4_2:73918751-73918770 None:intergenic 50.0%
! TGCGAGCCATTTGTTGAGCA+TGG + chr4_2:73918754-73918773 None:intergenic 50.0%
! ATGGTGCCAACACTCACAGT+CGG + chr4_2:73918789-73918808 None:intergenic 50.0%
!! TATCGGTGGTGGGAGTGACA+TGG + chr4_2:73915405-73915424 None:intergenic 55.0%
TTCGGTGGAGTTGCTAGGGA+CGG + chr4_2:73915434-73915453 None:intergenic 55.0%
TCCACCGAAAGCAAGGCCAA+CGG - chr4_2:73915445-73915464 Msa0621670:CDS 55.0%
!! AGCTCCGTTGGCCTTGCTTT+CGG + chr4_2:73915452-73915471 None:intergenic 55.0%
AGGGAACGTGGGTGGAACAT+TGG + chr4_2:73915615-73915634 None:intergenic 55.0%
GTGAAGAAAGGGAACGTGGG+TGG + chr4_2:73915623-73915642 None:intergenic 55.0%
GCGAGTTTAAAGGGGAGGAG+AGG - chr4_2:73918159-73918178 Msa0621670:intron 55.0%
! ATCAAGGGAAGGATCGGCTC+TGG + chr4_2:73918706-73918725 None:intergenic 55.0%
!!! GGAGCCTGATTCGGCGATTT+TGG + chr4_2:73918730-73918749 None:intergenic 55.0%
GAGCATGGAGGAGCCTGATT+CGG + chr4_2:73918739-73918758 None:intergenic 55.0%
!! ACGGTGGTGGTATCGGTGGT+GGG + chr4_2:73915415-73915434 None:intergenic 60.0%
! GCTAGGGACGGTGGTGGTAT+CGG + chr4_2:73915422-73915441 None:intergenic 60.0%
!! TCCGTTGGCCTTGCTTTCGG+TGG + chr4_2:73915449-73915468 None:intergenic 60.0%
GCTACCGATCCGGCAGATTC+CGG - chr4_2:73915469-73915488 Msa0621670:CDS 60.0%
CTACCGATCCGGCAGATTCC+GGG - chr4_2:73915470-73915489 Msa0621670:CDS 60.0%
CTTCCCGGAATCTGCCGGAT+CGG + chr4_2:73915476-73915495 None:intergenic 60.0%
AGATTCCGGGAAGCCACGGA+TGG - chr4_2:73915483-73915502 Msa0621670:CDS 60.0%
AATGGCCATCCGTGGCTTCC+CGG + chr4_2:73915491-73915510 None:intergenic 60.0%
AGCCACGGATGGCCATTGCT+AGG - chr4_2:73915494-73915513 Msa0621670:CDS 60.0%
GACCTAGCAATGGCCATCCG+TGG + chr4_2:73915499-73915518 None:intergenic 60.0%
!! GACGGTGGTGGTATCGGTGG+TGG + chr4_2:73915416-73915435 None:intergenic 65.0%
! AGGGACGGTGGTGGTATCGG+TGG + chr4_2:73915419-73915438 None:intergenic 65.0%
GGAGTTGCTAGGGACGGTGG+TGG + chr4_2:73915428-73915447 None:intergenic 65.0%
GGTGGAGTTGCTAGGGACGG+TGG + chr4_2:73915431-73915450 None:intergenic 65.0%
GGCCAACGGAGCTACCGATC+CGG - chr4_2:73915459-73915478 Msa0621670:CDS 65.0%
TGCCGGATCGGTAGCTCCGT+TGG + chr4_2:73915464-73915483 None:intergenic 65.0%
CGTGGCTTCCCGGAATCTGC+CGG + chr4_2:73915481-73915500 None:intergenic 65.0%
CGGCAGATTCCGGGAAGCCA+CGG - chr4_2:73915479-73915498 Msa0621670:CDS 65.0%
Chromosome Type Strat End Strand Name
chr4_2 gene 73915151 73918926 73915151 ID=Msa0621670;Name=Msa0621670
chr4_2 mRNA 73915151 73918926 73915151 ID=Msa0621670-mRNA-1;Parent=Msa0621670;Name=Msa0621670-mRNA-1;_AED=0.01;_eAED=0.01;_QI=253|1|0.5|1|1|1|2|0|272
chr4_2 exon 73915151 73915552 73915151 ID=Msa0621670-mRNA-1:exon:22229;Parent=Msa0621670-mRNA-1
chr4_2 exon 73918257 73918926 73918257 ID=Msa0621670-mRNA-1:exon:22228;Parent=Msa0621670-mRNA-1
chr4_2 five_prime_UTR 73918674 73918926 73918674 ID=Msa0621670-mRNA-1:five_prime_utr;Parent=Msa0621670-mRNA-1
chr4_2 CDS 73918257 73918673 73918257 ID=Msa0621670-mRNA-1:cds;Parent=Msa0621670-mRNA-1
chr4_2 CDS 73915151 73915552 73915151 ID=Msa0621670-mRNA-1:cds;Parent=Msa0621670-mRNA-1
Gene Sequence

>Msa0621670

ATGTCACTCCCACCACCGATACCACCACCGTCCCTAGCAACTCCACCGAAAGCAAGGCCAACGGAGCTACCGATCCGGCAGATTCCGGGAAGCCACGGATGGCCATTGCTAGGTCCCTTATCAGACAGGTTAGATTATTTCTGGTTCCAGAAGCCAGAAAACTTTTTCAGAACACGAATGGACAAGTACAAGAGTACTGTATTCCGTACCAATGTTCCACCCACGTTCCCTTTCTTCACCAACGTGAATCCTAATATTATTGCAGTTCTTGATTGTAAGTCTTTCTCTCACCTCTTTGATATGGACCTTGTTGACAAAAGAGATGTTCTAGTTGGAGATTTTGTTCCTAGTGTTGAATTTACGGGAAATATTAGGGTTGGTGTTTATCAAGATGTTTCTGAACCTCAACATGCTAAGGCAAAGAATTTCTCCATGAACATTTTGAAGCAAAGTTCAAGCATATGGGTACCAGAACTGATATCAAACCTGGACATATTTTTGGACCAAATTGAAGCAACACTGTCTAATTCTTCATCAGCAAGTTACTTCTCCCCACTGCAGAAATTTCTGTTCACGTTCCTAAGCAAAGTACTTGCCAGAGCCGATCCTTCCCTTGATCCCAAAATCGCCGAATCAGGCTCCTCCATGCTCAACAAATGGCTCGCAGTTCAGCTTTTACCGACTGTGAGTGTTGGCACCATCCAACCACTCGAAGAAATCTTCCTCCATTCCTTCTCTTACCCTTATGCTCTTGTCAGTGGAGACTACAAAAACCTCTACAACTTCATTAAACAACATGGTAACACTCTGTTTATTTAA

Protein sequence

>Msa0621670

MSLPPPIPPPSLATPPKARPTELPIRQIPGSHGWPLLGPLSDRLDYFWFQKPENFFRTRMDKYKSTVFRTNVPPTFPFFTNVNPNIIAVLDCKSFSHLFDMDLVDKRDVLVGDFVPSVEFTGNIRVGVYQDVSEPQHAKAKNFSMNILKQSSSIWVPELISNLDIFLDQIEATLSNSSSASYFSPLQKFLFTFLSKVLARADPSLDPKIAESGSSMLNKWLAVQLLPTVSVGTIQPLEEIFLHSFSYPYALVSGDYKNLYNFIKQHGNTLFI*