AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0617470

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0617470 MtrunA17_Chr8g0377101 97.540 569 14 0 1 569 348 916 0.0 1159
Msa0617470 MtrunA17_Chr8g0344201 57.624 564 233 4 8 568 366 926 0.0 691
Msa0617470 MtrunA17_Chr3g0118651 50.697 574 275 5 1 569 333 903 0.0 622
Msa0617470 MtrunA17_Chr4g0047281 55.299 519 225 2 50 568 383 894 0.0 619
Msa0617470 MtrunA17_Chr3g0118641 50.960 573 274 5 1 569 333 902 0.0 610
Msa0617470 MtrunA17_Chr4g0033171 50.438 571 276 5 3 569 158 725 0.0 608
Msa0617470 MtrunA17_Chr3g0118621 50.087 573 280 4 1 569 295 865 0.0 573
Msa0617470 MtrunA17_Chr7g0272791 48.227 564 286 4 8 569 308 867 0.0 562
Msa0617470 MtrunA17_Chr2g0329901 49.040 573 263 9 8 569 309 863 0.0 546
Msa0617470 MtrunA17_Chr2g0329911 47.965 565 283 6 8 569 305 861 0.0 545
Msa0617470 MtrunA17_Chr8g0343021 47.788 565 283 6 8 569 309 864 0.0 541
Msa0617470 MtrunA17_Chr1g0191921 47.788 565 287 6 8 569 299 858 0.0 541
Msa0617470 MtrunA17_Chr8g0343031 47.788 565 283 6 8 569 310 865 0.0 536
Msa0617470 MtrunA17_Chr3g0120071 47.909 574 277 8 5 569 298 858 0.0 533
Msa0617470 MtrunA17_Chr1g0205611 45.819 574 291 7 8 569 291 856 0.0 532
Msa0617470 MtrunA17_Chr5g0406871 47.818 573 271 8 8 569 312 867 7.08e-180 530
Msa0617470 MtrunA17_Chr8g0342881 46.397 569 287 7 8 569 299 856 8.44e-180 529
Msa0617470 MtrunA17_Chr8g0342891 45.133 565 300 6 8 569 304 861 7.43e-171 506
Msa0617470 MtrunA17_Chr8g0342971 45.664 565 297 6 8 569 313 870 2.67e-170 505
Msa0617470 MtrunA17_Chr8g0342951 45.664 565 297 6 8 569 311 868 4.28e-170 504
Msa0617470 MtrunA17_Chr8g0342931 44.858 564 303 5 8 569 193 750 1.65e-167 494
Msa0617470 MtrunA17_Chr8g0342921 44.956 565 301 6 8 569 312 869 4.03e-167 497
Msa0617470 MtrunA17_Chr8g0344211 43.894 565 307 6 8 569 311 868 4.27e-167 497
Msa0617470 MtrunA17_Chr8g0343011 44.464 569 298 7 8 569 308 865 4.25e-165 491
Msa0617470 MtrunA17_Chr8g0342901 45.665 519 269 5 58 569 316 828 1.77e-159 476
Msa0617470 MtrunA17_Chr8g0342981 43.924 576 296 8 8 569 261 823 1.41e-158 473
Msa0617470 MtrunA17_Chr8g0343001 44.294 517 267 7 55 569 310 807 4.48e-147 443
Msa0617470 MtrunA17_Chr8g0342991 42.940 517 276 5 54 569 309 807 6.52e-147 443
Msa0617470 MtrunA17_Chr8g0338451 41.591 553 303 9 8 552 310 850 7.80e-139 424
Msa0617470 MtrunA17_Chr6g0471951 39.286 504 263 7 33 532 18 482 1.03e-121 367
Msa0617470 MtrunA17_Chr8g0344241 44.332 397 217 3 175 569 67 461 4.70e-117 355
Msa0617470 MtrunA17_Chr7g0218231 61.345 119 46 0 219 337 14 132 2.98e-49 167
Msa0617470 MtrunA17_Chr6g0468081 60.674 89 35 0 249 337 1 89 5.59e-33 121
Msa0617470 MtrunA17_Chr4g0047271 50.000 92 45 1 477 568 1 91 3.98e-23 94.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0617470 AT1G67560.1 71.030 573 161 3 1 569 346 917 0.0 858
Msa0617470 AT1G72520.1 57.979 564 234 3 8 569 364 926 0.0 694
Msa0617470 AT1G17420.1 57.371 563 238 2 8 569 358 919 0.0 682
Msa0617470 AT3G45140.1 53.180 566 256 5 7 569 337 896 0.0 635
Msa0617470 AT3G45140.2 53.180 566 256 5 7 569 195 754 0.0 633
Msa0617470 AT1G55020.1 48.776 572 272 8 8 569 299 859 0.0 568
Msa0617470 AT3G22400.1 44.912 570 302 6 8 569 321 886 3.79e-176 521

Find 244 sgRNAs with CRISPR-Local

Find 366 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGTAACTTATCGTTTAAATT+AGG 0.106195 4_2:+67984438 None:intergenic
TCCTTTGTTATTGCTGATTC+TGG 0.123296 4_2:+67982244 None:intergenic
TTCCCCTGACGAAGAGTATT+TGG 0.159442 4_2:-67980434 Msa0617470:CDS
CTAACAAGTTCCTCTTTATC+AGG 0.169266 4_2:+67983428 None:intergenic
AGAATTTACTAAACAATTTC+AGG 0.178920 4_2:+67980365 None:intergenic
TTATATTGATGGTGTTAATT+TGG 0.191367 4_2:-67983020 Msa0617470:CDS
CGCCATAGTGGCTGCAAGTT+TGG 0.215210 4_2:+67983087 None:intergenic
TTCAATAGCTCAATATTTAC+TGG 0.223964 4_2:+67982391 None:intergenic
CAACATGCTGCTATAAATTT+CGG 0.244386 4_2:-67980640 Msa0617470:CDS
TACTTATATTCGAGAATTAA+AGG 0.247462 4_2:+67984409 None:intergenic
AGATTCTACCCATTCTTTAA+TGG 0.248411 4_2:+67980846 None:intergenic
TATTATTATCATCATGTTAT+AGG 0.251667 4_2:+67984175 None:intergenic
AGAATAAAATATTTAAGTTT+TGG 0.254298 4_2:+67979822 None:intergenic
GCTCGACAAAGTTTAATAAA+TGG 0.267126 4_2:-67981525 Msa0617470:CDS
GGAGGATGATTTCCGATAAA+TGG 0.273826 4_2:+67983905 None:intergenic
TATATTGATGGTGTTAATTT+GGG 0.275468 4_2:-67983019 Msa0617470:CDS
GTAACTTATCGTTTAAATTA+GGG 0.278641 4_2:+67984439 None:intergenic
TCATCTCGCGGCACATAAAC+AGG 0.295508 4_2:+67983181 None:intergenic
TTCAAAGGAGTTCCATTTAT+CGG 0.310252 4_2:-67983917 Msa0617470:five_prime_UTR
CTCTTCCGGCAGATCTTATT+CGG 0.323141 4_2:-67981407 Msa0617470:CDS
CATTCCTTTCAAGTGTTTCT+CGG 0.335053 4_2:-67983056 Msa0617470:CDS
ATTGACAAGCTTTATATTGA+TGG 0.336229 4_2:-67983031 Msa0617470:CDS
GCCATAGTGGCTGCAAGTTT+GGG 0.336382 4_2:+67983088 None:intergenic
TCATACTTACGACAATCATA+TGG 0.339367 4_2:-67980675 Msa0617470:CDS
TGTGTTAGCTGGAAAGAAAA+TGG 0.341273 4_2:+67983864 None:intergenic
AATTTCGGGCAATACCCTTT+TGG 0.341455 4_2:-67980625 Msa0617470:CDS
TTGGGAGATGAAGAGAATAA+AGG 0.344498 4_2:-67983001 Msa0617470:CDS
TCCTCTTTGGTATCTAGTTT+AGG 0.345137 4_2:+67980706 None:intergenic
AATTATAAATGCAAGAAATA+AGG 0.345568 4_2:-67980317 Msa0617470:CDS
ATGAAACAGGTCTTCAGTTC+TGG 0.346773 4_2:-67982947 Msa0617470:CDS
ATGCCACAGCACACTGGATT+TGG 0.347347 4_2:-67981865 Msa0617470:CDS
GACATCCCAGCTATTGTAAA+AGG 0.352857 4_2:-67982905 Msa0617470:intron
AATTAATCCAAGTGGGTAAC+TGG 0.356293 4_2:-67984308 Msa0617470:five_prime_UTR
ACAACATATGGAATGTTTGA+TGG 0.357193 4_2:+67984012 None:intergenic
TACCAAAGTAATGGCTGTTC+AGG 0.357660 4_2:-67980473 Msa0617470:CDS
AGATAGATTTGCTTGGTTGC+GGG 0.363128 4_2:-67982452 Msa0617470:CDS
AAACTAGATCCAACTATCTA+TGG 0.366904 4_2:-67982271 Msa0617470:CDS
AACATGCTGCTATAAATTTC+GGG 0.376754 4_2:-67980639 Msa0617470:CDS
TGACTCATTTGCATAATCAT+TGG 0.376857 4_2:-67980405 Msa0617470:CDS
CGATGCAATTGAATTTGATT+CGG 0.377861 4_2:+67980804 None:intergenic
ATCATCCTCCACGGCTTCAC+TGG 0.380490 4_2:-67983892 Msa0617470:five_prime_UTR
GACTCCACGACCAGTTGCTC+CGG 0.383763 4_2:+67980225 None:intergenic
GAGCATGTGGAGATTTGATA+TGG 0.388119 4_2:-67981433 Msa0617470:CDS
ACAATCATATGGGTTGCTTC+AGG 0.388863 4_2:-67980664 Msa0617470:CDS
TTCACAGTGCCAAGTGACTT+TGG 0.393066 4_2:-67983973 Msa0617470:five_prime_UTR
GGATGTAGCAACTTGTAAAT+AGG 0.393191 4_2:+67981582 None:intergenic
CTATGAGTAGCAATTATATA+TGG 0.396742 4_2:+67981624 None:intergenic
TGATTTCACTCCACCACTCT+TGG 0.397874 4_2:+67980770 None:intergenic
GAACTCCTTTGAACGAAGAT+TGG 0.398217 4_2:+67983927 None:intergenic
TATCCTCGTCGCTGTAGAAC+CGG 0.398710 4_2:-67983377 Msa0617470:five_prime_UTR
TAGTGGTCTTACTTCTTAGT+GGG 0.399793 4_2:-67984365 Msa0617470:five_prime_UTR
ATTTGATATGGAGTCTCTTC+CGG 0.403194 4_2:-67981421 Msa0617470:CDS
GTTCTACAGCGACGAGGATA+AGG 0.403861 4_2:+67983380 None:intergenic
TGGGAGATGAAGAGAATAAA+GGG 0.405860 4_2:-67983000 Msa0617470:CDS
CTGCAGATGGACTTCTAATC+TGG 0.406327 4_2:-67980873 Msa0617470:CDS
TATGAAAGATAGGTCCTCTT+TGG 0.407757 4_2:+67980693 None:intergenic
TTGAATATGATTCTACTTTG+AGG 0.408949 4_2:+67983817 None:intergenic
GCAGAGTATTCCACAACATA+TGG 0.411374 4_2:+67984000 None:intergenic
ACCCAAACTTGCAGCCACTA+TGG 0.412388 4_2:-67983089 Msa0617470:exon
TCCCCTGACGAAGAGTATTT+GGG 0.416587 4_2:-67980433 Msa0617470:CDS
TGAATATGATTCTACTTTGA+GGG 0.420439 4_2:+67983818 None:intergenic
TTGTCAGGACCCGGAGCAAC+TGG 0.420733 4_2:-67980235 Msa0617470:CDS
ACCCACTTGGATTAATTTGT+TGG 0.423920 4_2:+67984314 None:intergenic
AGCAATAACAAAGGAACTAC+TGG 0.430247 4_2:-67982236 Msa0617470:CDS
GTTGAGTAGGCAATGATGAT+AGG 0.431532 4_2:+67980503 None:intergenic
GAGATAGATTTGCTTGGTTG+CGG 0.431829 4_2:-67982453 Msa0617470:CDS
TATGGAATGTTTGATGGCTT+CGG 0.432986 4_2:+67984018 None:intergenic
TTTGCAAGGCAAGCCTTAGC+TGG 0.434446 4_2:-67982421 Msa0617470:CDS
GATCATATAGATATACTGTT+GGG 0.436421 4_2:+67980202 None:intergenic
TGGTGGAATAAGCTTGGAAA+AGG 0.441048 4_2:-67982203 Msa0617470:intron
AAGCGGTGCTGCCCAAGAAC+AGG 0.441538 4_2:-67983507 Msa0617470:five_prime_UTR
AGGGTTGCCTAACTCATTGT+AGG 0.442421 4_2:+67983448 None:intergenic
TCTGGTCTGCCATTAAAGAA+TGG 0.443639 4_2:-67980855 Msa0617470:CDS
CCAAGTTTGAAAAGTAGAAC+TGG 0.445657 4_2:-67980292 Msa0617470:CDS
TTCATCAACTAGTAAATCAT+TGG 0.446490 4_2:-67981802 Msa0617470:intron
GGACCCGGAGCAACTGGTCG+TGG 0.447142 4_2:-67980229 Msa0617470:CDS
ATCCAAGTGGGTAACTGGTA+AGG 0.447500 4_2:-67984303 Msa0617470:five_prime_UTR
AGAAGTCCATCTGCAGCATA+AGG 0.447808 4_2:+67980880 None:intergenic
GTGGAGTGAAATCAAGTGTA+AGG 0.450222 4_2:-67980761 Msa0617470:CDS
ATTGATCAATTCGTTTATGC+TGG 0.453876 4_2:-67980032 Msa0617470:three_prime_UTR
AAAGGAAGCAAAAGTTCATA+AGG 0.455254 4_2:+67980256 None:intergenic
CATACTTACGACAATCATAT+GGG 0.460891 4_2:-67980674 Msa0617470:CDS
TGACCCAAATACTCTTCGTC+AGG 0.461331 4_2:+67980430 None:intergenic
GAGTTCATCTTCTTGATGAA+TGG 0.462879 4_2:+67982031 None:intergenic
AGAGAAAGCTCAATAGCTAT+AGG 0.463940 4_2:+67981941 None:intergenic
TTTACACCACAGGGCATTGA+AGG 0.466878 4_2:+67980922 None:intergenic
TCCATTGTATAGCGCGTATG+AGG 0.467969 4_2:+67981561 None:intergenic
CATTACCAATCTTCGTTCAA+AGG 0.468216 4_2:-67983932 Msa0617470:five_prime_UTR
GTAGATTCTACTCTCTCAAT+GGG 0.468404 4_2:+67984250 None:intergenic
CTCATGAGGGTAGGACGGTT+AGG 0.468763 4_2:+67980592 None:intergenic
GAACTTGTTAGACCAGTCAT+TGG 0.470623 4_2:-67983416 Msa0617470:five_prime_UTR
CTGGTCTGCCATTAAAGAAT+GGG 0.472539 4_2:-67980854 Msa0617470:CDS
GGATCTAGTTTGCTGCGGAT+TGG 0.473071 4_2:+67982283 None:intergenic
AGTAAATATTGAGCTATTGA+AGG 0.476774 4_2:-67982389 Msa0617470:intron
AGTAGATTCTACTCTCTCAA+TGG 0.479783 4_2:+67984249 None:intergenic
TAATCATTGGATCAATGATC+AGG 0.480482 4_2:-67980392 Msa0617470:CDS
TTGGTAGCTTGAAGTTGAGT+AGG 0.480940 4_2:+67980490 None:intergenic
TACTAGACTTGAGGAGATAG+AGG 0.484216 4_2:-67980341 Msa0617470:CDS
TTAGGCACATATCCTCCAAA+AGG 0.484226 4_2:+67980610 None:intergenic
TCGATCAATTTCGATTGCCT+TGG 0.485249 4_2:-67980181 Msa0617470:three_prime_UTR
ATAGTGGTCTTACTTCTTAG+TGG 0.485796 4_2:-67984366 Msa0617470:five_prime_UTR
ACAAAGTTTAATAAATGGAG+GGG 0.485869 4_2:-67981520 Msa0617470:CDS
GGTGGGAAAAGTGATGAAAC+AGG 0.490922 4_2:-67982960 Msa0617470:CDS
GAACTACTGGAGCAAGAACT+TGG 0.493456 4_2:-67982223 Msa0617470:CDS
ATAAACGAATTGATCAATAT+CGG 0.493904 4_2:+67980037 None:intergenic
GGAGCGAGTAGGAGGTCTTC+CGG 0.493994 4_2:+67983358 None:intergenic
ACTACATGTGTAAATTTGCA+AGG 0.494315 4_2:-67984676 Msa0617470:five_prime_UTR
AAACAGGATGCATTTGCTGC+TGG 0.495438 4_2:-67983142 Msa0617470:five_prime_UTR
CGCCGAAGATCTTTGATACC+AGG 0.496253 4_2:+67983554 None:intergenic
TTGCTTCCTTTGTCAGGACC+CGG 0.497544 4_2:-67980244 Msa0617470:CDS
CGAATCAAATTCAATTGCAT+CGG 0.498807 4_2:-67980803 Msa0617470:CDS
GAGGCATAAGCTTTCCTCTC+GGG 0.499830 4_2:+67982004 None:intergenic
TTGTAATGAAGAGAATCGTC+CGG 0.500870 4_2:+67981981 None:intergenic
TCCCTTACCAGTTACCCACT+TGG 0.501084 4_2:+67984301 None:intergenic
GTGTTAGCTGGAAAGAAAAT+GGG 0.502615 4_2:+67983865 None:intergenic
CTCTCATGATCTCCAATGAC+TGG 0.509818 4_2:+67983404 None:intergenic
CACTTCAAATCATAAGTTTG+AGG 0.511119 4_2:+67979659 None:intergenic
TACTGGATTGACTCCAGCTA+AGG 0.511465 4_2:+67982408 None:intergenic
ATAATAGAAAATCTCTTGGT+GGG 0.512813 4_2:-67982977 Msa0617470:CDS
TTGTTATTGCTGATTCTGGA+GGG 0.513518 4_2:+67982248 None:intergenic
TATGCTCCCTACAATGAGTT+AGG 0.514068 4_2:-67983455 Msa0617470:five_prime_UTR
CACCTGGTATCAAAGATCTT+CGG 0.514238 4_2:-67983556 Msa0617470:five_prime_UTR
GAATGAATCCATGTGTTAGC+TGG 0.514422 4_2:+67983853 None:intergenic
AGAACTTGGTGGAATAAGCT+TGG 0.516371 4_2:-67982209 Msa0617470:CDS
CAAGATCTATGGTCAAGGTA+GGG 0.517590 4_2:-67979985 Msa0617470:three_prime_UTR
TTGTCGTAAGTATGAAAGAT+AGG 0.519427 4_2:+67980683 None:intergenic
TAGTCCTGGAAAATATGCCT+TGG 0.520574 4_2:-67981478 Msa0617470:CDS
CGCGGCACATAAACAGGGTG+TGG 0.521515 4_2:+67983187 None:intergenic
GTCCTGAACAGCCATTACTT+TGG 0.521910 4_2:+67980471 None:intergenic
ATTCTCTTCATTACAAAGGC+CGG 0.525411 4_2:-67981974 Msa0617470:CDS
AGGGATAATAGAAAATCTCT+TGG 0.530957 4_2:-67982981 Msa0617470:CDS
TACCTCCGAATAAGATCTGC+CGG 0.531248 4_2:+67981402 None:intergenic
GAAGTCCATCTGCAGCATAA+GGG 0.532536 4_2:+67980881 None:intergenic
ACTCCACGACCAGTTGCTCC+GGG 0.533633 4_2:+67980226 None:intergenic
ATCAAACATTCCATATGTTG+TGG 0.534612 4_2:-67984010 Msa0617470:five_prime_UTR
CGATCATATAGATATACTGT+TGG 0.534665 4_2:+67980201 None:intergenic
CATGTTAGCTCAAATGATGC+TGG 0.535268 4_2:-67981827 Msa0617470:CDS
GTTAGGCAACCCTGATAAAG+AGG 0.537690 4_2:-67983438 Msa0617470:five_prime_UTR
TCTGGAGGGCCATAGATAGT+TGG 0.541049 4_2:+67982262 None:intergenic
TAACAAGTTCCTCTTTATCA+GGG 0.541380 4_2:+67983429 None:intergenic
ATATGTTAATGAACTATATG+TGG 0.543283 4_2:-67984601 Msa0617470:five_prime_UTR
GAATTGTATCTCCAAGGGGT+TGG 0.543585 4_2:+67979855 None:intergenic
TCCAAGTGGGTAACTGGTAA+GGG 0.544373 4_2:-67984302 Msa0617470:five_prime_UTR
TCCGTCGTCGGCAGCATGTG+AGG 0.544434 4_2:+67984219 None:intergenic
TTGAAAAGTAGAACTGGTGC+AGG 0.545990 4_2:-67980286 Msa0617470:CDS
ACAAGATCTATGGTCAAGGT+AGG 0.546021 4_2:-67979986 Msa0617470:three_prime_UTR
CATGACTTATATGCGACATA+TGG 0.549105 4_2:+67979893 None:intergenic
TCTAAAACAAACGAGATATG+TGG 0.550371 4_2:+67979702 None:intergenic
GATAATAGAAAATCTCTTGG+TGG 0.550624 4_2:-67982978 Msa0617470:CDS
ACAAAAGAAATGAACCTTGG+TGG 0.550976 4_2:-67980729 Msa0617470:CDS
CGACAAAGTTTAATAAATGG+AGG 0.552738 4_2:-67981522 Msa0617470:CDS
TAAGAGGAATTGTATCTCCA+AGG 0.553093 4_2:+67979849 None:intergenic
AAGATCTATGGTCAAGGTAG+GGG 0.553229 4_2:-67979984 Msa0617470:three_prime_UTR
CTACATGTGTAAATTTGCAA+GGG 0.556653 4_2:-67984675 Msa0617470:five_prime_UTR
TAAATTCTCTACTAGACTTG+AGG 0.557721 4_2:-67980350 Msa0617470:CDS
TTACAGGAGATAGATTTGCT+TGG 0.559693 4_2:-67982459 Msa0617470:intron
TCCTCATACGCGCTATACAA+TGG 0.560220 4_2:-67981562 Msa0617470:CDS
TTGGTAATGAGAATAGCAGC+TGG 0.560990 4_2:+67983946 None:intergenic
TTGCTAAGCACAAGGGGAAG+CGG 0.561266 4_2:-67983524 Msa0617470:five_prime_UTR
AAGAGGAATTGTATCTCCAA+GGG 0.561324 4_2:+67979850 None:intergenic
TTTGTTATTGCTGATTCTGG+AGG 0.561343 4_2:+67982247 None:intergenic
AGAGGAAAGCTTATGCCTCC+CGG 0.561811 4_2:-67982000 Msa0617470:CDS
GGAGGCATAAGCTTTCCTCT+CGG 0.565442 4_2:+67982003 None:intergenic
GACTACCCTTATGCTGCAGA+TGG 0.565485 4_2:-67980886 Msa0617470:CDS
TGTAATGAAGAGAATCGTCC+GGG 0.566537 4_2:+67981982 None:intergenic
TCCAGTGTGCTGTGGCATCA+TGG 0.566754 4_2:+67981870 None:intergenic
GTTAAGGACTCATGCATGCA+TGG 0.567574 4_2:-67981649 Msa0617470:CDS
ACTTCAAGCTACCAAAGTAA+TGG 0.567833 4_2:-67980482 Msa0617470:CDS
GCTTCACTAAGCCAACCCCT+TGG 0.569548 4_2:-67979866 Msa0617470:three_prime_UTR
TGCGGGACAACGAATTTGCA+AGG 0.570627 4_2:-67982435 Msa0617470:CDS
TGGGTCCTCCAGTGAAGCCG+TGG 0.572006 4_2:+67983884 None:intergenic
ATACCAGGTGGTGTTTGTGA+TGG 0.574236 4_2:+67983569 None:intergenic
GGAAGACCTCCTACTCGCTC+CGG 0.576419 4_2:-67983356 Msa0617470:intron
GAATGTGCTTTCCAGGGGCA+TGG 0.578236 4_2:-67980956 Msa0617470:intron
TGGAATCTTACGTAGGAGGT+TGG 0.578287 4_2:-67984044 Msa0617470:five_prime_UTR
GACAAAGTTTAATAAATGGA+GGG 0.578318 4_2:-67981521 Msa0617470:CDS
GGGTTGCCTAACTCATTGTA+GGG 0.579957 4_2:+67983449 None:intergenic
ATCCTCCACGGCTTCACTGG+AGG 0.580284 4_2:-67983889 Msa0617470:five_prime_UTR
CACCAACAAATTAATCCAAG+TGG 0.584585 4_2:-67984316 Msa0617470:five_prime_UTR
ACTCTACCGGAGCGAGTAGG+AGG 0.585738 4_2:+67983350 None:intergenic
AGCTATAGGACGCAGAACAC+CGG 0.590530 4_2:+67981955 None:intergenic
AGTGGTCTTACTTCTTAGTG+GGG 0.590897 4_2:-67984364 Msa0617470:five_prime_UTR
TAGGCACATATCCTCCAAAA+GGG 0.592242 4_2:+67980611 None:intergenic
GCCTCACATGCTGCCGACGA+CGG 0.593091 4_2:-67984220 Msa0617470:five_prime_UTR
CTTGTGCAAAATATACATGA+AGG 0.598263 4_2:+67980004 None:intergenic
CAAGTTATATTATAATGCCA+AGG 0.600956 4_2:+67980164 None:intergenic
TTTACACTGACAGGCTATGG+AGG 0.600987 4_2:-67982095 Msa0617470:intron
CAAGTTTGGGTATGAGATTG+TGG 0.602086 4_2:+67983101 None:intergenic
TGCGGCAAAGTAAGTGTCTG+AGG 0.602592 4_2:+67981917 None:intergenic
GACGATTCTCTTCATTACAA+AGG 0.603810 4_2:-67981978 Msa0617470:CDS
CTGACAAAAGAAATGAACCT+TGG 0.604053 4_2:-67980732 Msa0617470:CDS
CAGCAGCTTACAAGAGCATG+TGG 0.604299 4_2:-67981446 Msa0617470:CDS
TGGTAATGAGAATAGCAGCT+GGG 0.604515 4_2:+67983947 None:intergenic
GCCATGATGCCACAGCACAC+TGG 0.604888 4_2:-67981871 Msa0617470:CDS
AGCTGCTGAACTAAGCTCCA+AGG 0.606766 4_2:+67981461 None:intergenic
TTGCACAAGATCTATGGTCA+AGG 0.609401 4_2:-67979990 Msa0617470:three_prime_UTR
CAAAGTTTAATAAATGGAGG+GGG 0.611294 4_2:-67981519 Msa0617470:CDS
TTACCATCACAAACACCACC+TGG 0.612280 4_2:-67983572 Msa0617470:five_prime_UTR
AGCGTGGAATCTTACGTAGG+AGG 0.612694 4_2:-67984048 Msa0617470:five_prime_UTR
GGGGTTGGCTTAGTGAAGCA+TGG 0.616417 4_2:+67979870 None:intergenic
GACCCAAATACTCTTCGTCA+GGG 0.617656 4_2:+67980431 None:intergenic
GTGAGGATTTGCTAAGCACA+AGG 0.617992 4_2:-67983532 Msa0617470:five_prime_UTR
TCTTCAAAAGTTTCATCTCG+CGG 0.618364 4_2:+67983169 None:intergenic
ACCAACAAATTAATCCAAGT+GGG 0.619865 4_2:-67984315 Msa0617470:five_prime_UTR
ATGTTGAGCTCCAAGAGTGG+TGG 0.620332 4_2:-67980780 Msa0617470:CDS
GTTGCTCCGGGTCCTGACAA+AGG 0.621179 4_2:+67980238 None:intergenic
CTTCCAAATCCAGTGTGCTG+TGG 0.622388 4_2:+67981862 None:intergenic
GCTGGGGATCCAAAGTCACT+TGG 0.625360 4_2:+67983964 None:intergenic
TTATCGGAAATCATCCTCCA+CGG 0.626060 4_2:-67983901 Msa0617470:five_prime_UTR
CTACTGGAGCAAGAACTTGG+TGG 0.628297 4_2:-67982220 Msa0617470:CDS
ATCATATAGATATACTGTTG+GGG 0.629144 4_2:+67980203 None:intergenic
TTACACCACAGGGCATTGAA+GGG 0.629797 4_2:+67980923 None:intergenic
TTCCGGCAGATCTTATTCGG+AGG 0.631003 4_2:-67981404 Msa0617470:intron
GCGGTTAATATCTCCGTCGT+CGG 0.631798 4_2:+67984207 None:intergenic
ATCTCCGAGAAACACTTGAA+AGG 0.632975 4_2:+67983052 None:intergenic
GAGGATTTGCTAAGCACAAG+GGG 0.634095 4_2:-67983530 Msa0617470:five_prime_UTR
ATGTTATAGGTAGTTAGCAG+CGG 0.634219 4_2:+67984188 None:intergenic
TATCAAAGATCTTCGGCGTG+AGG 0.635500 4_2:-67983549 Msa0617470:five_prime_UTR
TCAATTCTAGTCTCACATCG+TGG 0.638934 4_2:+67983214 None:intergenic
GGAAGCAAAAGTTCATAAGG+AGG 0.642933 4_2:+67980259 None:intergenic
GTCCTCCAGTGAAGCCGTGG+AGG 0.643200 4_2:+67983887 None:intergenic
AGGTCTTCAGTTCTGGAGAG+CGG 0.643829 4_2:-67982940 Msa0617470:CDS
CATCTCGCGGCACATAAACA+GGG 0.644374 4_2:+67983182 None:intergenic
CGGATGTTGAGCTCCAAGAG+TGG 0.647233 4_2:-67980783 Msa0617470:CDS
AATGTCTGAATTCGCCATAG+TGG 0.648310 4_2:+67983075 None:intergenic
TGGAGTGAAATCAAGTGTAA+GGG 0.653346 4_2:-67980760 Msa0617470:CDS
ACCCAAATACTCTTCGTCAG+GGG 0.656711 4_2:+67980432 None:intergenic
GTATCTAGTTTAGGCCACCA+AGG 0.657149 4_2:+67980715 None:intergenic
TCCAGAATCAGCAATAACAA+AGG 0.658477 4_2:-67982245 Msa0617470:CDS
GGTAATGAGAATAGCAGCTG+GGG 0.660706 4_2:+67983948 None:intergenic
TGATCAGAATCTAAATGCAG+CGG 0.663704 4_2:+67984832 None:intergenic
AGATGAACTCTTTGCCCGAG+AGG 0.664250 4_2:-67982018 Msa0617470:CDS
TGAGGATTTGCTAAGCACAA+GGG 0.666301 4_2:-67983531 Msa0617470:five_prime_UTR
ATAACTCTACCGGAGCGAGT+AGG 0.674778 4_2:+67983347 None:intergenic
AATAGAAAAGTTTACACACA+AGG 0.676340 4_2:-67981893 Msa0617470:CDS
TAGTTGGATCTAGTTTGCTG+CGG 0.682588 4_2:+67982278 None:intergenic
TGAATGGCAAAAGCATGTCA+TGG 0.684212 4_2:+67982047 None:intergenic
GCCTAAACTAGATACCAAAG+AGG 0.696249 4_2:-67980707 Msa0617470:CDS
CGAAGATCTTTGATACCAGG+TGG 0.696678 4_2:+67983557 None:intergenic
AGAGGAATTGTATCTCCAAG+GGG 0.698360 4_2:+67979851 None:intergenic
AATGAAGAGAATCGTCCGGG+AGG 0.719002 4_2:+67981985 None:intergenic
AAAAGCGTGGAATCTTACGT+AGG 0.726945 4_2:-67984051 Msa0617470:five_prime_UTR
CTTCCGGTTCTACAGCGACG+AGG 0.730830 4_2:+67983374 None:intergenic
GAAGACCCTTCAATGCCCTG+TGG 0.756949 4_2:-67980928 Msa0617470:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! CAATAATAAATAATATATGA+TGG + chr4_2:67983341-67983360 None:intergenic 10.0%
!!! AGAATAAAATATTTAAGTTT+TGG + chr4_2:67984694-67984713 None:intergenic 10.0%
!!! ATTGTGGATAATTTTTTTTA+GGG + chr4_2:67979976-67979995 None:intergenic 15.0%
!!! AATTGTGGATAATTTTTTTT+AGG + chr4_2:67979977-67979996 None:intergenic 15.0%
!! TCTTCAAAAAAAAGAAATTA+GGG + chr4_2:67980037-67980056 None:intergenic 15.0%
!! TATTATTATCATCATGTTAT+AGG + chr4_2:67980341-67980360 None:intergenic 15.0%
!!! TTTTTCTTACTTTTTTTTTG+TGG - chr4_2:67981191-67981210 Msa0617470:intron 15.0%
!! ATAAAAAATGTAACACAATT+AGG - chr4_2:67983368-67983387 Msa0617470:five_prime_UTR 15.0%
!! TAAAAAATGTAACACAATTA+GGG - chr4_2:67983369-67983388 Msa0617470:five_prime_UTR 15.0%
!! AATTATAAATGCAAGAAATA+AGG - chr4_2:67984196-67984215 Msa0617470:five_prime_UTR 15.0%
!!! AGTTTTTATACTTCTTTTTT+AGG - chr4_2:67984719-67984738 Msa0617470:five_prime_UTR 15.0%
!! AGATGTGAAAAATAAAAAAT+GGG + chr4_2:67984752-67984771 None:intergenic 15.0%
!! AAGATGTGAAAAATAAAAAA+TGG + chr4_2:67984753-67984772 None:intergenic 15.0%
!!! TCATTTATGCAATTTTTTTA+TGG - chr4_2:67984773-67984792 Msa0617470:five_prime_UTR 15.0%
!! ATATGTTAATGAACTATATG+TGG - chr4_2:67979912-67979931 Msa0617470:three_prime_UTR 20.0%
!! CTCTTCAAAAAAAAGAAATT+AGG + chr4_2:67980038-67980057 None:intergenic 20.0%
!!! CTAATTTCTTTTTTTTGAAG+AGG - chr4_2:67980036-67980055 Msa0617470:three_prime_UTR 20.0%
!! GTAACTTATCGTTTAAATTA+GGG + chr4_2:67980077-67980096 None:intergenic 20.0%
!! TGTAACTTATCGTTTAAATT+AGG + chr4_2:67980078-67980097 None:intergenic 20.0%
!! TACTTATATTCGAGAATTAA+AGG + chr4_2:67980107-67980126 None:intergenic 20.0%
!! AAAAATGTATCAATGTATAG+TGG - chr4_2:67980131-67980150 Msa0617470:three_prime_UTR 20.0%
!! CAAAACCTAAAAATTCAAAA+TGG + chr4_2:67981219-67981238 None:intergenic 20.0%
!!! CATTTTGAATTTTTAGGTTT+TGG - chr4_2:67981217-67981236 Msa0617470:intron 20.0%
!!! TTATATTGATGGTGTTAATT+TGG - chr4_2:67981493-67981512 Msa0617470:CDS 20.0%
!!! TATATTGATGGTGTTAATTT+GGG - chr4_2:67981494-67981513 Msa0617470:CDS 20.0%
!! TCAACTTGAAACTAAAATTT+GGG + chr4_2:67981785-67981804 None:intergenic 20.0%
!! TTCAACTTGAAACTAAAATT+TGG + chr4_2:67981786-67981805 None:intergenic 20.0%
!! ACAAAGTTATATTGTATTCA+AGG + chr4_2:67981988-67982007 None:intergenic 20.0%
!!! CTTTTTTATTCATACCAATT+AGG - chr4_2:67982154-67982173 Msa0617470:intron 20.0%
!! AAAAAATGTAACACAATTAG+GGG - chr4_2:67983370-67983389 Msa0617470:five_prime_UTR 20.0%
!!! TATTAACAGATTGCTATTAA+AGG + chr4_2:67983530-67983549 None:intergenic 20.0%
!! AGAATTTACTAAACAATTTC+AGG + chr4_2:67984151-67984170 None:intergenic 20.0%
!! ATAAACGAATTGATCAATAT+CGG + chr4_2:67984479-67984498 None:intergenic 20.0%
!!! TTTAAGTTTTGGTAAATAAG+AGG + chr4_2:67984683-67984702 None:intergenic 20.0%
!! ATTTTTATGCTGGATAATGA+AGG + chr4_2:67979815-67979834 None:intergenic 25.0%
!! CATGTAGTTAATTTTTATGC+TGG + chr4_2:67979825-67979844 None:intergenic 25.0%
!!! TTTTTTTAGGGAATGAATTG+TGG + chr4_2:67979964-67979983 None:intergenic 25.0%
! AATCTAGTCTCGTTAAAAAA+AGG + chr4_2:67980388-67980407 None:intergenic 25.0%
!! ACATTTTCAGCTACTAATAA+TGG - chr4_2:67980438-67980457 Msa0617470:CDS 25.0%
! TGAATATGATTCTACTTTGA+GGG + chr4_2:67980698-67980717 None:intergenic 25.0%
! TTGAATATGATTCTACTTTG+AGG + chr4_2:67980699-67980718 None:intergenic 25.0%
! AAGAAAAAACATAACTCTAC+CGG + chr4_2:67981179-67981198 None:intergenic 25.0%
!!! AACTTTTGAAGAAATCAAAC+AGG - chr4_2:67981355-67981374 Msa0617470:intron 25.0%
!! ATTGACAAGCTTTATATTGA+TGG - chr4_2:67981482-67981501 Msa0617470:CDS 25.0%
! ATAATAGAAAATCTCTTGGT+GGG - chr4_2:67981536-67981555 Msa0617470:CDS 25.0%
! CAACTTGAAACTAAAATTTG+GGG + chr4_2:67981784-67981803 None:intergenic 25.0%
!!! TAGACATGAAGAATTGATTT+TGG + chr4_2:67981857-67981876 None:intergenic 25.0%
!! CAATTCTTCATGTCTAAAAT+CGG - chr4_2:67981861-67981880 Msa0617470:CDS 25.0%
! TGAAACCAAACATGTTAAAA+AGG - chr4_2:67981902-67981921 Msa0617470:CDS 25.0%
! TAAAAAAAATGTGACTCATG+AGG + chr4_2:67981947-67981966 None:intergenic 25.0%
!!! CACATTTTTTTTACTGTACT+AGG - chr4_2:67981954-67981973 Msa0617470:CDS 25.0%
! TTCAATAGCTCAATATTTAC+TGG + chr4_2:67982125-67982144 None:intergenic 25.0%
! AGTAAATATTGAGCTATTGA+AGG - chr4_2:67982124-67982143 Msa0617470:intron 25.0%
! ACAAACAAACAAACAAAACA+TGG + chr4_2:67982342-67982361 None:intergenic 25.0%
!! GTGTAAACTTTTCTATTTTG+CGG + chr4_2:67982617-67982636 None:intergenic 25.0%
! AATAGAAAAGTTTACACACA+AGG - chr4_2:67982620-67982639 Msa0617470:intron 25.0%
! TTCATCAACTAGTAAATCAT+TGG - chr4_2:67982711-67982730 Msa0617470:intron 25.0%
! TAAATCATTGGTAAGACAAT+TGG - chr4_2:67982723-67982742 Msa0617470:intron 25.0%
! AATGACTTGATCAAAAGAAA+TGG - chr4_2:67982781-67982800 Msa0617470:intron 25.0%
! TTAACCTGCATATTACATAT+TGG + chr4_2:67982849-67982868 None:intergenic 25.0%
! AATATGTAATATGCAGGTTA+AGG - chr4_2:67982848-67982867 Msa0617470:intron 25.0%
! CTATGAGTAGCAATTATATA+TGG + chr4_2:67982892-67982911 None:intergenic 25.0%
! GACAAAGTTTAATAAATGGA+GGG - chr4_2:67982992-67983011 Msa0617470:CDS 25.0%
! ACAAAGTTTAATAAATGGAG+GGG - chr4_2:67982993-67983012 Msa0617470:CDS 25.0%
! AATGATACCATATTCATGAA+TGG + chr4_2:67983203-67983222 None:intergenic 25.0%
! ATGCAATCGAAAATTTGAAA+CGG - chr4_2:67983415-67983434 Msa0617470:five_prime_UTR 25.0%
! AACAAAGGTTGAACTTAAAA+TGG + chr4_2:67983488-67983507 None:intergenic 25.0%
! TATATTTGTCCTATGAACAA+AGG + chr4_2:67983503-67983522 None:intergenic 25.0%
!! AATCAGAATCATTTTCTTGA+GGG + chr4_2:67983956-67983975 None:intergenic 25.0%
!! TAATCAGAATCATTTTCTTG+AGG + chr4_2:67983957-67983976 None:intergenic 25.0%
! ATCATATAGATATACTGTTG+GGG + chr4_2:67984313-67984332 None:intergenic 25.0%
! GATCATATAGATATACTGTT+GGG + chr4_2:67984314-67984333 None:intergenic 25.0%
! CAAGTTATATTATAATGCCA+AGG + chr4_2:67984352-67984371 None:intergenic 25.0%
!! TATATTTTGCACAAGATCTA+TGG - chr4_2:67984517-67984536 Msa0617470:five_prime_UTR 25.0%
!! AGAAAAATAATAGCCTTACA+AGG - chr4_2:67984559-67984578 Msa0617470:five_prime_UTR 25.0%
!! GAAAAATAATAGCCTTACAA+GGG - chr4_2:67984560-67984579 Msa0617470:five_prime_UTR 25.0%
ACTACATGTGTAAATTTGCA+AGG - chr4_2:67979837-67979856 Msa0617470:three_prime_UTR 30.0%
CTACATGTGTAAATTTGCAA+GGG - chr4_2:67979838-67979857 Msa0617470:three_prime_UTR 30.0%
!!! AAGAAATTAGGGTTTTGAGA+TGG + chr4_2:67980026-67980045 None:intergenic 30.0%
ACCAACAAATTAATCCAAGT+GGG - chr4_2:67980198-67980217 Msa0617470:exon 30.0%
! TACTAATAATGGAAAAAGCG+TGG - chr4_2:67980449-67980468 Msa0617470:CDS 30.0%
ACAACATATGGAATGTTTGA+TGG + chr4_2:67980504-67980523 None:intergenic 30.0%
ATCAAACATTCCATATGTTG+TGG - chr4_2:67980503-67980522 Msa0617470:CDS 30.0%
TTCAAAGGAGTTCCATTTAT+CGG - chr4_2:67980596-67980615 Msa0617470:CDS 30.0%
! TTTTCACAGTACTACTTACT+TGG + chr4_2:67980725-67980744 None:intergenic 30.0%
CATAACATACACTTCTTCAA+AGG + chr4_2:67980868-67980887 None:intergenic 30.0%
AACAACATGCTAAGTTAAGT+TGG + chr4_2:67980895-67980914 None:intergenic 30.0%
! TTTTGTTGCATGGATTTGAT+AGG - chr4_2:67980913-67980932 Msa0617470:CDS 30.0%
! TGATTTTCTTTCCTGTTCTT+GGG + chr4_2:67981020-67981039 None:intergenic 30.0%
TAACAAGTTCCTCTTTATCA+GGG + chr4_2:67981087-67981106 None:intergenic 30.0%
!!! TGGTGCCATTTTGAATTTTT+AGG - chr4_2:67981211-67981230 Msa0617470:intron 30.0%
!!! AGTGCTCTAAATGTGTTTTT+TGG - chr4_2:67981261-67981280 Msa0617470:intron 30.0%
AGGGATAATAGAAAATCTCT+TGG - chr4_2:67981532-67981551 Msa0617470:CDS 30.0%
GATAATAGAAAATCTCTTGG+TGG - chr4_2:67981535-67981554 Msa0617470:CDS 30.0%
!! AACATGTTTGGTTTCACTTT+TGG + chr4_2:67981898-67981917 None:intergenic 30.0%
! AAACATGTTAAAAAGGCATG+CGG - chr4_2:67981909-67981928 Msa0617470:CDS 30.0%
AAACTAGATCCAACTATCTA+TGG - chr4_2:67982242-67982261 Msa0617470:CDS 30.0%
!!! CAATTACTTTTTACACTGAC+AGG - chr4_2:67982409-67982428 Msa0617470:CDS 30.0%
GCTCGACAAAGTTTAATAAA+TGG - chr4_2:67982988-67983007 Msa0617470:CDS 30.0%
CGACAAAGTTTAATAAATGG+AGG - chr4_2:67982991-67983010 Msa0617470:CDS 30.0%
CAAAGTTTAATAAATGGAGG+GGG - chr4_2:67982994-67983013 Msa0617470:CDS 30.0%
AACATTGCTTGATATCTCTT+TGG - chr4_2:67983154-67983173 Msa0617470:five_prime_UTR 30.0%
! TTTGAAACGGTTCCTATAAA+AGG - chr4_2:67983428-67983447 Msa0617470:five_prime_UTR 30.0%
CAAGGAAAAATATCAAAACG+TGG - chr4_2:67983454-67983473 Msa0617470:five_prime_UTR 30.0%
TAAGTTCAACCTTTGTTCAT+AGG - chr4_2:67983491-67983510 Msa0617470:five_prime_UTR 30.0%
AGCAATCTGTTAATACTCTA+TGG - chr4_2:67983535-67983554 Msa0617470:five_prime_UTR 30.0%
AGATTCTACCCATTCTTTAA+TGG + chr4_2:67983670-67983689 None:intergenic 30.0%
CGATGCAATTGAATTTGATT+CGG + chr4_2:67983712-67983731 None:intergenic 30.0%
CGAATCAAATTCAATTGCAT+CGG - chr4_2:67983710-67983729 Msa0617470:intron 30.0%
TTGTCGTAAGTATGAAAGAT+AGG + chr4_2:67983833-67983852 None:intergenic 30.0%
TCATACTTACGACAATCATA+TGG - chr4_2:67983838-67983857 Msa0617470:five_prime_UTR 30.0%
CATACTTACGACAATCATAT+GGG - chr4_2:67983839-67983858 Msa0617470:five_prime_UTR 30.0%
CAACATGCTGCTATAAATTT+CGG - chr4_2:67983873-67983892 Msa0617470:five_prime_UTR 30.0%
AACATGCTGCTATAAATTTC+GGG - chr4_2:67983874-67983893 Msa0617470:five_prime_UTR 30.0%
GATGATAGGAAAAAAAGTTG+AGG + chr4_2:67983999-67984018 None:intergenic 30.0%
TGACTCATTTGCATAATCAT+TGG - chr4_2:67984108-67984127 Msa0617470:five_prime_UTR 30.0%
TAATCATTGGATCAATGATC+AGG - chr4_2:67984121-67984140 Msa0617470:five_prime_UTR 30.0%
TAAATTCTCTACTAGACTTG+AGG - chr4_2:67984163-67984182 Msa0617470:five_prime_UTR 30.0%
AAAGGAAGCAAAAGTTCATA+AGG + chr4_2:67984260-67984279 None:intergenic 30.0%
CGATCATATAGATATACTGT+TGG + chr4_2:67984315-67984334 None:intergenic 30.0%
!! GATCTGATACACTATTTTAG+TGG - chr4_2:67984393-67984412 Msa0617470:five_prime_UTR 30.0%
ATTGATCAATTCGTTTATGC+TGG - chr4_2:67984481-67984500 Msa0617470:five_prime_UTR 30.0%
CTTGTGCAAAATATACATGA+AGG + chr4_2:67984512-67984531 None:intergenic 30.0%
! TTTTCTCTATATCCCTTGTA+AGG + chr4_2:67984575-67984594 None:intergenic 30.0%
! TCTAAAACAAACGAGATATG+TGG + chr4_2:67984814-67984833 None:intergenic 30.0%
TGATCAGAATCTAAATGCAG+CGG + chr4_2:67979684-67979703 None:intergenic 35.0%
! GATCAGTGTGTTCAGTTTTT+AGG - chr4_2:67979734-67979753 Msa0617470:three_prime_UTR 35.0%
AGGTGAGAAAAACACAAGAA+GGG + chr4_2:67979795-67979814 None:intergenic 35.0%
AAGGTGAGAAAAACACAAGA+AGG + chr4_2:67979796-67979815 None:intergenic 35.0%
!! GTTGCTCTTTTTGAGAATTG+TGG + chr4_2:67979992-67980011 None:intergenic 35.0%
ATTCTCAAAAAGAGCAACAC+AGG - chr4_2:67979994-67980013 Msa0617470:three_prime_UTR 35.0%
! ATAGTGGTCTTACTTCTTAG+TGG - chr4_2:67980147-67980166 Msa0617470:three_prime_UTR 35.0%
! TAGTGGTCTTACTTCTTAGT+GGG - chr4_2:67980148-67980167 Msa0617470:three_prime_UTR 35.0%
CACCAACAAATTAATCCAAG+TGG - chr4_2:67980197-67980216 Msa0617470:exon 35.0%
!! ACCCACTTGGATTAATTTGT+TGG + chr4_2:67980202-67980221 None:intergenic 35.0%
AATTAATCCAAGTGGGTAAC+TGG - chr4_2:67980205-67980224 Msa0617470:CDS 35.0%
GTAGATTCTACTCTCTCAAT+GGG + chr4_2:67980266-67980285 None:intergenic 35.0%
AGTAGATTCTACTCTCTCAA+TGG + chr4_2:67980267-67980286 None:intergenic 35.0%
ATGTTATAGGTAGTTAGCAG+CGG + chr4_2:67980328-67980347 None:intergenic 35.0%
! TATGGAATGTTTGATGGCTT+CGG + chr4_2:67980498-67980517 None:intergenic 35.0%
CATTACCAATCTTCGTTCAA+AGG - chr4_2:67980581-67980600 Msa0617470:CDS 35.0%
GTGTTAGCTGGAAAGAAAAT+GGG + chr4_2:67980651-67980670 None:intergenic 35.0%
TGTGTTAGCTGGAAAGAAAA+TGG + chr4_2:67980652-67980671 None:intergenic 35.0%
! TTTTCTTTCCAGCTAACACA+TGG - chr4_2:67980652-67980671 Msa0617470:CDS 35.0%
! CTTGTTTGTTAGTATACACG+TGG + chr4_2:67980827-67980846 None:intergenic 35.0%
!!! TAGCATGTTGTTTTGTTGCA+TGG - chr4_2:67980903-67980922 Msa0617470:CDS 35.0%
! GTGATTTTCTTTCCTGTTCT+TGG + chr4_2:67981021-67981040 None:intergenic 35.0%
CTAACAAGTTCCTCTTTATC+AGG + chr4_2:67981088-67981107 None:intergenic 35.0%
TCTTCAAAAGTTTCATCTCG+CGG + chr4_2:67981347-67981366 None:intergenic 35.0%
! CATTCCTTTCAAGTGTTTCT+CGG - chr4_2:67981457-67981476 Msa0617470:CDS 35.0%
TTGGGAGATGAAGAGAATAA+AGG - chr4_2:67981512-67981531 Msa0617470:CDS 35.0%
TGGGAGATGAAGAGAATAAA+GGG - chr4_2:67981513-67981532 Msa0617470:CDS 35.0%
! GCATACCTTTTACAATAGCT+GGG + chr4_2:67981616-67981635 None:intergenic 35.0%
! AGCATACCTTTTACAATAGC+TGG + chr4_2:67981617-67981636 None:intergenic 35.0%
! GCATGCCTTTTTAACATGTT+TGG + chr4_2:67981910-67981929 None:intergenic 35.0%
!! ACTAGTTTGTTGAATGAACG+TGG + chr4_2:67982022-67982041 None:intergenic 35.0%
! TAGTCCTTTTGCATTGTTAC+AGG - chr4_2:67982038-67982057 Msa0617470:CDS 35.0%
ATCTCCTGTAACAATGCAAA+AGG + chr4_2:67982045-67982064 None:intergenic 35.0%
! TTACAGGAGATAGATTTGCT+TGG - chr4_2:67982054-67982073 Msa0617470:CDS 35.0%
CCAAAAACACCTTCAATAGT+TGG + chr4_2:67982195-67982214 None:intergenic 35.0%
!!! CCAACTATTGAAGGTGTTTT+TGG - chr4_2:67982192-67982211 Msa0617470:intron 35.0%
!! TTGTTATTGCTGATTCTGGA+GGG + chr4_2:67982268-67982287 None:intergenic 35.0%
!! TTTGTTATTGCTGATTCTGG+AGG + chr4_2:67982269-67982288 None:intergenic 35.0%
TCCAGAATCAGCAATAACAA+AGG - chr4_2:67982268-67982287 Msa0617470:CDS 35.0%
!! TCCTTTGTTATTGCTGATTC+TGG + chr4_2:67982272-67982291 None:intergenic 35.0%
AGCAATAACAAAGGAACTAC+TGG - chr4_2:67982277-67982296 Msa0617470:CDS 35.0%
GAGTTCATCTTCTTGATGAA+TGG + chr4_2:67982485-67982504 None:intergenic 35.0%
TTGTAATGAAGAGAATCGTC+CGG + chr4_2:67982535-67982554 None:intergenic 35.0%
GACGATTCTCTTCATTACAA+AGG - chr4_2:67982535-67982554 Msa0617470:intron 35.0%
ATTCTCTTCATTACAAAGGC+CGG - chr4_2:67982539-67982558 Msa0617470:intron 35.0%
AGAGAAAGCTCAATAGCTAT+AGG + chr4_2:67982575-67982594 None:intergenic 35.0%
AGTGCCAATATGTAATATGC+AGG - chr4_2:67982842-67982861 Msa0617470:intron 35.0%
GGATGTAGCAACTTGTAAAT+AGG + chr4_2:67982934-67982953 None:intergenic 35.0%
!! ATTGAAGCATCTTTTAGTCC+TGG - chr4_2:67983021-67983040 Msa0617470:CDS 35.0%
ATTTGATATGGAGTCTCTTC+CGG - chr4_2:67983092-67983111 Msa0617470:exon 35.0%
ACTACCTCCATTCATGAATA+TGG - chr4_2:67983193-67983212 Msa0617470:five_prime_UTR 35.0%
GATACCATATTCATGAATGG+AGG + chr4_2:67983200-67983219 None:intergenic 35.0%
! GTTTTCCAAGTTTACACTTC+AGG - chr4_2:67983294-67983313 Msa0617470:intron 35.0%
TATCTCCTGAAGTGTAAACT+TGG + chr4_2:67983302-67983321 None:intergenic 35.0%
! TTTTCCTTGCCACCTTTTAT+AGG + chr4_2:67983443-67983462 None:intergenic 35.0%
! ATCACAAGTTTTACACCACA+GGG + chr4_2:67983603-67983622 None:intergenic 35.0%
! AATCACAAGTTTTACACCAC+AGG + chr4_2:67983604-67983623 None:intergenic 35.0%
TGGAGTGAAATCAAGTGTAA+GGG - chr4_2:67983753-67983772 Msa0617470:intron 35.0%
CTGACAAAAGAAATGAACCT+TGG - chr4_2:67983781-67983800 Msa0617470:intron 35.0%
ACAAAAGAAATGAACCTTGG+TGG - chr4_2:67983784-67983803 Msa0617470:intron 35.0%
! TCCTCTTTGGTATCTAGTTT+AGG + chr4_2:67983810-67983829 None:intergenic 35.0%
TATGAAAGATAGGTCCTCTT+TGG + chr4_2:67983823-67983842 None:intergenic 35.0%
! ATAAGTTTTCTCATGAGGGT+AGG + chr4_2:67983933-67983952 None:intergenic 35.0%
! AGGGATAAGTTTTCTCATGA+GGG + chr4_2:67983937-67983956 None:intergenic 35.0%
ACTTCAAGCTACCAAAGTAA+TGG - chr4_2:67984031-67984050 Msa0617470:five_prime_UTR 35.0%
!! CCAGTTCTACTTTTCAAACT+TGG + chr4_2:67984224-67984243 None:intergenic 35.0%
CCAAGTTTGAAAAGTAGAAC+TGG - chr4_2:67984221-67984240 Msa0617470:five_prime_UTR 35.0%
CATGACTTATATGCGACATA+TGG + chr4_2:67984623-67984642 None:intergenic 35.0%
AAGAGGAATTGTATCTCCAA+GGG + chr4_2:67984666-67984685 None:intergenic 35.0%
TAAGAGGAATTGTATCTCCA+AGG + chr4_2:67984667-67984686 None:intergenic 35.0%
TGAGAAAAACACAAGAAGGG+GGG + chr4_2:67979792-67979811 None:intergenic 40.0%
GTGAGAAAAACACAAGAAGG+GGG + chr4_2:67979793-67979812 None:intergenic 40.0%
GGTGAGAAAAACACAAGAAG+GGG + chr4_2:67979794-67979813 None:intergenic 40.0%
! AGTGGTCTTACTTCTTAGTG+GGG - chr4_2:67980149-67980168 Msa0617470:three_prime_UTR 40.0%
! AAAAGCGTGGAATCTTACGT+AGG - chr4_2:67980462-67980481 Msa0617470:CDS 40.0%
! GCAGAGTATTCCACAACATA+TGG + chr4_2:67980516-67980535 None:intergenic 40.0%
! TGGTAATGAGAATAGCAGCT+GGG + chr4_2:67980569-67980588 None:intergenic 40.0%
!! TTGGTAATGAGAATAGCAGC+TGG + chr4_2:67980570-67980589 None:intergenic 40.0%
GAACTCCTTTGAACGAAGAT+TGG + chr4_2:67980589-67980608 None:intergenic 40.0%
GGAGGATGATTTCCGATAAA+TGG + chr4_2:67980611-67980630 None:intergenic 40.0%
TTATCGGAAATCATCCTCCA+CGG - chr4_2:67980612-67980631 Msa0617470:CDS 40.0%
GAATGAATCCATGTGTTAGC+TGG + chr4_2:67980663-67980682 None:intergenic 40.0%
CACCTGGTATCAAAGATCTT+CGG - chr4_2:67980957-67980976 Msa0617470:intron 40.0%
!! TGAGGATTTGCTAAGCACAA+GGG - chr4_2:67980982-67981001 Msa0617470:intron 40.0%
TATGCTCCCTACAATGAGTT+AGG - chr4_2:67981058-67981077 Msa0617470:intron 40.0%
!! GAACTTGTTAGACCAGTCAT+TGG - chr4_2:67981097-67981116 Msa0617470:intron 40.0%
TCAATTCTAGTCTCACATCG+TGG + chr4_2:67981302-67981321 None:intergenic 40.0%
CAAGTTTGGGTATGAGATTG+TGG + chr4_2:67981415-67981434 None:intergenic 40.0%
AATGTCTGAATTCGCCATAG+TGG + chr4_2:67981441-67981460 None:intergenic 40.0%
ATCTCCGAGAAACACTTGAA+AGG + chr4_2:67981464-67981483 None:intergenic 40.0%
ATGAAACAGGTCTTCAGTTC+TGG - chr4_2:67981566-67981585 Msa0617470:CDS 40.0%
GACATCCCAGCTATTGTAAA+AGG - chr4_2:67981608-67981627 Msa0617470:CDS 40.0%
! GAGATAGATTTGCTTGGTTG+CGG - chr4_2:67982060-67982079 Msa0617470:CDS 40.0%
! AGATAGATTTGCTTGGTTGC+GGG - chr4_2:67982061-67982080 Msa0617470:CDS 40.0%
CACTCATGTAACTGCCTAAT+TGG + chr4_2:67982171-67982190 None:intergenic 40.0%
CATGAGTGTCCAACTATTGA+AGG - chr4_2:67982183-67982202 Msa0617470:intron 40.0%
!!! AAGGTGTTTTTGGTCTTTGC+AGG - chr4_2:67982202-67982221 Msa0617470:intron 40.0%
!! TAGTTGGATCTAGTTTGCTG+CGG + chr4_2:67982238-67982257 None:intergenic 40.0%
! AGAACTTGGTGGAATAAGCT+TGG - chr4_2:67982304-67982323 Msa0617470:intron 40.0%
TGGTGGAATAAGCTTGGAAA+AGG - chr4_2:67982310-67982329 Msa0617470:intron 40.0%
! CTTTTTACACTGACAGGCTA+TGG - chr4_2:67982415-67982434 Msa0617470:CDS 40.0%
! TGAATGGCAAAAGCATGTCA+TGG + chr4_2:67982469-67982488 None:intergenic 40.0%
TGTAATGAAGAGAATCGTCC+GGG + chr4_2:67982534-67982553 None:intergenic 40.0%
CATGTTAGCTCAAATGATGC+TGG - chr4_2:67982686-67982705 Msa0617470:intron 40.0%
TAGTCCTGGAAAATATGCCT+TGG - chr4_2:67983035-67983054 Msa0617470:CDS 40.0%
GAGCATGTGGAGATTTGATA+TGG - chr4_2:67983080-67983099 Msa0617470:exon 40.0%
! TAACACAATTAGGGGCATGT+TGG - chr4_2:67983378-67983397 Msa0617470:five_prime_UTR 40.0%
GAAACGGTTCCTATAAAAGG+TGG - chr4_2:67983431-67983450 Msa0617470:five_prime_UTR 40.0%
TCTATGGAATGTGCTTTCCA+GGG - chr4_2:67983551-67983570 Msa0617470:five_prime_UTR 40.0%
TCTGGTCTGCCATTAAAGAA+TGG - chr4_2:67983658-67983677 Msa0617470:intron 40.0%
CTGGTCTGCCATTAAAGAAT+GGG - chr4_2:67983659-67983678 Msa0617470:intron 40.0%
GTGGAGTGAAATCAAGTGTA+AGG - chr4_2:67983752-67983771 Msa0617470:intron 40.0%
GCCTAAACTAGATACCAAAG+AGG - chr4_2:67983806-67983825 Msa0617470:intron 40.0%
! ACAATCATATGGGTTGCTTC+AGG - chr4_2:67983849-67983868 Msa0617470:five_prime_UTR 40.0%
! AATTTCGGGCAATACCCTTT+TGG - chr4_2:67983888-67983907 Msa0617470:five_prime_UTR 40.0%
TAGGCACATATCCTCCAAAA+GGG + chr4_2:67983905-67983924 None:intergenic 40.0%
TTAGGCACATATCCTCCAAA+AGG + chr4_2:67983906-67983925 None:intergenic 40.0%
! GAGGGATAAGTTTTCTCATG+AGG + chr4_2:67983938-67983957 None:intergenic 40.0%
GTTGAGTAGGCAATGATGAT+AGG + chr4_2:67984013-67984032 None:intergenic 40.0%
! TTGGTAGCTTGAAGTTGAGT+AGG + chr4_2:67984026-67984045 None:intergenic 40.0%
TACCAAAGTAATGGCTGTTC+AGG - chr4_2:67984040-67984059 Msa0617470:five_prime_UTR 40.0%
TACTAGACTTGAGGAGATAG+AGG - chr4_2:67984172-67984191 Msa0617470:five_prime_UTR 40.0%
TTGAAAAGTAGAACTGGTGC+AGG - chr4_2:67984227-67984246 Msa0617470:five_prime_UTR 40.0%
GGAAGCAAAAGTTCATAAGG+AGG + chr4_2:67984257-67984276 None:intergenic 40.0%
! GAACTTTTGCTTCCTTTGTC+AGG - chr4_2:67984263-67984282 Msa0617470:five_prime_UTR 40.0%
TCGATCAATTTCGATTGCCT+TGG - chr4_2:67984332-67984351 Msa0617470:five_prime_UTR 40.0%
TTGCACAAGATCTATGGTCA+AGG - chr4_2:67984523-67984542 Msa0617470:five_prime_UTR 40.0%
ACAAGATCTATGGTCAAGGT+AGG - chr4_2:67984527-67984546 Msa0617470:five_prime_UTR 40.0%
CAAGATCTATGGTCAAGGTA+GGG - chr4_2:67984528-67984547 Msa0617470:five_prime_UTR 40.0%
AAGATCTATGGTCAAGGTAG+GGG - chr4_2:67984529-67984548 Msa0617470:five_prime_UTR 40.0%
AGAGGAATTGTATCTCCAAG+GGG + chr4_2:67984665-67984684 None:intergenic 40.0%
ATCCAAGTGGGTAACTGGTA+AGG - chr4_2:67980210-67980229 Msa0617470:CDS 45.0%
TCCAAGTGGGTAACTGGTAA+GGG - chr4_2:67980211-67980230 Msa0617470:CDS 45.0%
TGGAATCTTACGTAGGAGGT+TGG - chr4_2:67980469-67980488 Msa0617470:CDS 45.0%
TTCACAGTGCCAAGTGACTT+TGG - chr4_2:67980540-67980559 Msa0617470:CDS 45.0%
GGTAATGAGAATAGCAGCTG+GGG + chr4_2:67980568-67980587 None:intergenic 45.0%
! CACTTCTTCAAAGGTGTGTG+AGG + chr4_2:67980859-67980878 None:intergenic 45.0%
TTACCATCACAAACACCACC+TGG - chr4_2:67980941-67980960 Msa0617470:CDS 45.0%
ATACCAGGTGGTGTTTGTGA+TGG + chr4_2:67980947-67980966 None:intergenic 45.0%
CGAAGATCTTTGATACCAGG+TGG + chr4_2:67980959-67980978 None:intergenic 45.0%
TATCAAAGATCTTCGGCGTG+AGG - chr4_2:67980964-67980983 Msa0617470:intron 45.0%
!! GTGAGGATTTGCTAAGCACA+AGG - chr4_2:67980981-67981000 Msa0617470:intron 45.0%
!! GAGGATTTGCTAAGCACAAG+GGG - chr4_2:67980983-67981002 Msa0617470:intron 45.0%
GGGTTGCCTAACTCATTGTA+GGG + chr4_2:67981067-67981086 None:intergenic 45.0%
AGGGTTGCCTAACTCATTGT+AGG + chr4_2:67981068-67981087 None:intergenic 45.0%
GTTAGGCAACCCTGATAAAG+AGG - chr4_2:67981075-67981094 Msa0617470:intron 45.0%
CTCTCATGATCTCCAATGAC+TGG + chr4_2:67981112-67981131 None:intergenic 45.0%
! AAACAGGATGCATTTGCTGC+TGG - chr4_2:67981371-67981390 Msa0617470:intron 45.0%
GGTGGGAAAAGTGATGAAAC+AGG - chr4_2:67981553-67981572 Msa0617470:CDS 45.0%
GTATGCTACCTCTACTGCTT+AGG - chr4_2:67981630-67981649 Msa0617470:CDS 45.0%
TGTGTTTGCCTAAGCAGTAG+AGG + chr4_2:67981641-67981660 None:intergenic 45.0%
! TACTGGATTGACTCCAGCTA+AGG + chr4_2:67982108-67982127 None:intergenic 45.0%
GAACTACTGGAGCAAGAACT+TGG - chr4_2:67982290-67982309 Msa0617470:CDS 45.0%
TTTACACTGACAGGCTATGG+AGG - chr4_2:67982418-67982437 Msa0617470:CDS 45.0%
GTTAAGGACTCATGCATGCA+TGG - chr4_2:67982864-67982883 Msa0617470:intron 45.0%
TCCTCATACGCGCTATACAA+TGG - chr4_2:67982951-67982970 Msa0617470:CDS 45.0%
TCCATTGTATAGCGCGTATG+AGG + chr4_2:67982955-67982974 None:intergenic 45.0%
! AGCTCCAAGGCATATTTTCC+AGG + chr4_2:67983042-67983061 None:intergenic 45.0%
CTCTTCCGGCAGATCTTATT+CGG - chr4_2:67983106-67983125 Msa0617470:five_prime_UTR 45.0%
TACCTCCGAATAAGATCTGC+CGG + chr4_2:67983114-67983133 None:intergenic 45.0%
GGTTCCTATAAAAGGTGGCA+AGG - chr4_2:67983436-67983455 Msa0617470:five_prime_UTR 45.0%
CTCTATGGAATGTGCTTTCC+AGG - chr4_2:67983550-67983569 Msa0617470:five_prime_UTR 45.0%
CTATGGAATGTGCTTTCCAG+GGG - chr4_2:67983552-67983571 Msa0617470:five_prime_UTR 45.0%
!! TTACACCACAGGGCATTGAA+GGG + chr4_2:67983593-67983612 None:intergenic 45.0%
!! TTTACACCACAGGGCATTGA+AGG + chr4_2:67983594-67983613 None:intergenic 45.0%
GAAGTCCATCTGCAGCATAA+GGG + chr4_2:67983635-67983654 None:intergenic 45.0%
AGAAGTCCATCTGCAGCATA+AGG + chr4_2:67983636-67983655 None:intergenic 45.0%
! CTGCAGATGGACTTCTAATC+TGG - chr4_2:67983640-67983659 Msa0617470:intron 45.0%
TGATTTCACTCCACCACTCT+TGG + chr4_2:67983746-67983765 None:intergenic 45.0%
! GTATCTAGTTTAGGCCACCA+AGG + chr4_2:67983801-67983820 None:intergenic 45.0%
! GTTTTCTCATGAGGGTAGGA+CGG + chr4_2:67983929-67983948 None:intergenic 45.0%
GTCCTGAACAGCCATTACTT+TGG + chr4_2:67984045-67984064 None:intergenic 45.0%
!! TTCCCCTGACGAAGAGTATT+TGG - chr4_2:67984079-67984098 Msa0617470:five_prime_UTR 45.0%
!! TCCCCTGACGAAGAGTATTT+GGG - chr4_2:67984080-67984099 Msa0617470:five_prime_UTR 45.0%
ACCCAAATACTCTTCGTCAG+GGG + chr4_2:67984084-67984103 None:intergenic 45.0%
GACCCAAATACTCTTCGTCA+GGG + chr4_2:67984085-67984104 None:intergenic 45.0%
TGACCCAAATACTCTTCGTC+AGG + chr4_2:67984086-67984105 None:intergenic 45.0%
GAATTGTATCTCCAAGGGGT+TGG + chr4_2:67984661-67984680 None:intergenic 45.0%
!!! ATATAAGATTTTTTTTTTTA+TGG + chr4_2:67979896-67979915 None:intergenic 5.0%
TCCCTTACCAGTTACCCACT+TGG + chr4_2:67980215-67980234 None:intergenic 50.0%
GCGGTTAATATCTCCGTCGT+CGG + chr4_2:67980309-67980328 None:intergenic 50.0%
AGCGTGGAATCTTACGTAGG+AGG - chr4_2:67980465-67980484 Msa0617470:CDS 50.0%
CGCCGAAGATCTTTGATACC+AGG + chr4_2:67980962-67980981 None:intergenic 50.0%
TTGCTAAGCACAAGGGGAAG+CGG - chr4_2:67980989-67981008 Msa0617470:intron 50.0%
GTTCTACAGCGACGAGGATA+AGG + chr4_2:67981136-67981155 None:intergenic 50.0%
TATCCTCGTCGCTGTAGAAC+CGG - chr4_2:67981136-67981155 Msa0617470:intron 50.0%
ATAACTCTACCGGAGCGAGT+AGG + chr4_2:67981169-67981188 None:intergenic 50.0%
CATCTCGCGGCACATAAACA+GGG + chr4_2:67981334-67981353 None:intergenic 50.0%
TCATCTCGCGGCACATAAAC+AGG + chr4_2:67981335-67981354 None:intergenic 50.0%
ACCCAAACTTGCAGCCACTA+TGG - chr4_2:67981424-67981443 Msa0617470:CDS 50.0%
GCCATAGTGGCTGCAAGTTT+GGG + chr4_2:67981428-67981447 None:intergenic 50.0%
!! AGGTCTTCAGTTCTGGAGAG+CGG - chr4_2:67981573-67981592 Msa0617470:CDS 50.0%
TGCGGGACAACGAATTTGCA+AGG - chr4_2:67982078-67982097 Msa0617470:CDS 50.0%
TTTGCAAGGCAAGCCTTAGC+TGG - chr4_2:67982092-67982111 Msa0617470:intron 50.0%
!! GGATCTAGTTTGCTGCGGAT+TGG + chr4_2:67982233-67982252 None:intergenic 50.0%
TCTGGAGGGCCATAGATAGT+TGG + chr4_2:67982254-67982273 None:intergenic 50.0%
CTACTGGAGCAAGAACTTGG+TGG - chr4_2:67982293-67982312 Msa0617470:intron 50.0%
AGATGAACTCTTTGCCCGAG+AGG - chr4_2:67982495-67982514 Msa0617470:intron 50.0%
GAGGCATAAGCTTTCCTCTC+GGG + chr4_2:67982512-67982531 None:intergenic 50.0%
! GGAGGCATAAGCTTTCCTCT+CGG + chr4_2:67982513-67982532 None:intergenic 50.0%
AGAGGAAAGCTTATGCCTCC+CGG - chr4_2:67982513-67982532 Msa0617470:intron 50.0%
AATGAAGAGAATCGTCCGGG+AGG + chr4_2:67982531-67982550 None:intergenic 50.0%
AGCTATAGGACGCAGAACAC+CGG + chr4_2:67982561-67982580 None:intergenic 50.0%
TGCGGCAAAGTAAGTGTCTG+AGG + chr4_2:67982599-67982618 None:intergenic 50.0%
ATGCCACAGCACACTGGATT+TGG - chr4_2:67982648-67982667 Msa0617470:intron 50.0%
CTTCCAAATCCAGTGTGCTG+TGG + chr4_2:67982654-67982673 None:intergenic 50.0%
AGCTGCTGAACTAAGCTCCA+AGG + chr4_2:67983055-67983074 None:intergenic 50.0%
! CAGCAGCTTACAAGAGCATG+TGG - chr4_2:67983067-67983086 Msa0617470:CDS 50.0%
TTCCGGCAGATCTTATTCGG+AGG - chr4_2:67983109-67983128 Msa0617470:five_prime_UTR 50.0%
GACTACCCTTATGCTGCAGA+TGG - chr4_2:67983627-67983646 Msa0617470:intron 50.0%
ATGTTGAGCTCCAAGAGTGG+TGG - chr4_2:67983733-67983752 Msa0617470:intron 50.0%
! TTCGGGCAATACCCTTTTGG+AGG - chr4_2:67983891-67983910 Msa0617470:five_prime_UTR 50.0%
TTGCTTCCTTTGTCAGGACC+CGG - chr4_2:67984269-67984288 Msa0617470:five_prime_UTR 50.0%
GCTGGGGATCCAAAGTCACT+TGG + chr4_2:67980552-67980571 None:intergenic 55.0%
ATCATCCTCCACGGCTTCAC+TGG - chr4_2:67980621-67980640 Msa0617470:CDS 55.0%
CGCCATAGTGGCTGCAAGTT+TGG + chr4_2:67981429-67981448 None:intergenic 55.0%
TCCAGTGTGCTGTGGCATCA+TGG + chr4_2:67982646-67982665 None:intergenic 55.0%
GAATGTGCTTTCCAGGGGCA+TGG - chr4_2:67983557-67983576 Msa0617470:five_prime_UTR 55.0%
GAAGACCCTTCAATGCCCTG+TGG - chr4_2:67983585-67983604 Msa0617470:intron 55.0%
CGGATGTTGAGCTCCAAGAG+TGG - chr4_2:67983730-67983749 Msa0617470:intron 55.0%
CTCATGAGGGTAGGACGGTT+AGG + chr4_2:67983924-67983943 None:intergenic 55.0%
!! GGGGTTGGCTTAGTGAAGCA+TGG + chr4_2:67984646-67984665 None:intergenic 55.0%
GCTTCACTAAGCCAACCCCT+TGG - chr4_2:67984647-67984666 Msa0617470:five_prime_UTR 55.0%
ATCCTCCACGGCTTCACTGG+AGG - chr4_2:67980624-67980643 Msa0617470:CDS 60.0%
!! AAGCGGTGCTGCCCAAGAAC+AGG - chr4_2:67981006-67981025 Msa0617470:intron 60.0%
CTTCCGGTTCTACAGCGACG+AGG + chr4_2:67981142-67981161 None:intergenic 60.0%
GGAGCGAGTAGGAGGTCTTC+CGG + chr4_2:67981158-67981177 None:intergenic 60.0%
GGAAGACCTCCTACTCGCTC+CGG - chr4_2:67981157-67981176 Msa0617470:intron 60.0%
ACTCTACCGGAGCGAGTAGG+AGG + chr4_2:67981166-67981185 None:intergenic 60.0%
CGCGGCACATAAACAGGGTG+TGG + chr4_2:67981329-67981348 None:intergenic 60.0%
GCCATGATGCCACAGCACAC+TGG - chr4_2:67982642-67982661 Msa0617470:intron 60.0%
GTCTTCTACTGCCATGCCCC+TGG + chr4_2:67983571-67983590 None:intergenic 60.0%
GTTGCTCCGGGTCCTGACAA+AGG + chr4_2:67984278-67984297 None:intergenic 60.0%
TTGTCAGGACCCGGAGCAAC+TGG - chr4_2:67984278-67984297 Msa0617470:five_prime_UTR 60.0%
ACTCCACGACCAGTTGCTCC+GGG + chr4_2:67984290-67984309 None:intergenic 60.0%
GACTCCACGACCAGTTGCTC+CGG + chr4_2:67984291-67984310 None:intergenic 60.0%
GCCTCACATGCTGCCGACGA+CGG - chr4_2:67980293-67980312 Msa0617470:CDS 65.0%
TCCGTCGTCGGCAGCATGTG+AGG + chr4_2:67980297-67980316 None:intergenic 65.0%
GTCCTCCAGTGAAGCCGTGG+AGG + chr4_2:67980629-67980648 None:intergenic 65.0%
TGGGTCCTCCAGTGAAGCCG+TGG + chr4_2:67980632-67980651 None:intergenic 65.0%
GGACCCGGAGCAACTGGTCG+TGG - chr4_2:67984284-67984303 Msa0617470:five_prime_UTR 70.0%
Chromosome Type Strat End Strand Name
chr4_2 gene 67979663 67984872 67979663 ID=Msa0617470;Name=Msa0617470
chr4_2 mRNA 67979663 67984872 67979663 ID=Msa0617470-mRNA-1;Parent=Msa0617470;Name=Msa0617470-mRNA-1;_AED=0.04;_eAED=0.04;_QI=1453|1|1|1|1|1|8|541|569
chr4_2 exon 67979663 67980963 67979663 ID=Msa0617470-mRNA-1:exon:19497;Parent=Msa0617470-mRNA-1
chr4_2 exon 67981405 67981671 67981405 ID=Msa0617470-mRNA-1:exon:19496;Parent=Msa0617470-mRNA-1
chr4_2 exon 67981803 67982104 67981803 ID=Msa0617470-mRNA-1:exon:19495;Parent=Msa0617470-mRNA-1
chr4_2 exon 67982204 67982311 67982204 ID=Msa0617470-mRNA-1:exon:19494;Parent=Msa0617470-mRNA-1
chr4_2 exon 67982390 67982475 67982390 ID=Msa0617470-mRNA-1:exon:19493;Parent=Msa0617470-mRNA-1
chr4_2 exon 67982906 67983238 67982906 ID=Msa0617470-mRNA-1:exon:19492;Parent=Msa0617470-mRNA-1
chr4_2 exon 67983357 67983600 67983357 ID=Msa0617470-mRNA-1:exon:19491;Parent=Msa0617470-mRNA-1
chr4_2 exon 67983810 67984872 67983810 ID=Msa0617470-mRNA-1:exon:19490;Parent=Msa0617470-mRNA-1
chr4_2 five_prime_UTR 67983810 67984872 67983810 ID=Msa0617470-mRNA-1:five_prime_utr;Parent=Msa0617470-mRNA-1
chr4_2 five_prime_UTR 67983357 67983600 67983357 ID=Msa0617470-mRNA-1:five_prime_utr;Parent=Msa0617470-mRNA-1
chr4_2 five_prime_UTR 67983093 67983238 67983093 ID=Msa0617470-mRNA-1:five_prime_utr;Parent=Msa0617470-mRNA-1
chr4_2 CDS 67982906 67983092 67982906 ID=Msa0617470-mRNA-1:cds;Parent=Msa0617470-mRNA-1
chr4_2 CDS 67982390 67982475 67982390 ID=Msa0617470-mRNA-1:cds;Parent=Msa0617470-mRNA-1
chr4_2 CDS 67982204 67982311 67982204 ID=Msa0617470-mRNA-1:cds;Parent=Msa0617470-mRNA-1
chr4_2 CDS 67981803 67982104 67981803 ID=Msa0617470-mRNA-1:cds;Parent=Msa0617470-mRNA-1
chr4_2 CDS 67981405 67981671 67981405 ID=Msa0617470-mRNA-1:cds;Parent=Msa0617470-mRNA-1
chr4_2 CDS 67980204 67980963 67980204 ID=Msa0617470-mRNA-1:cds;Parent=Msa0617470-mRNA-1
chr4_2 three_prime_UTR 67979663 67980203 67979663 ID=Msa0617470-mRNA-1:three_prime_utr;Parent=Msa0617470-mRNA-1
Gene Sequence

>Msa0617470

ATGGCGAATTCAGACATTCCTTTCAAGTGTTTCTCGGAGATTGACAAGCTTTATATTGATGGTGTTAATTTGGGAGATGAAGAGAATAAAGGGATAATAGAAAATCTCTTGGTGGGAAAAGTGATGAAACAGGTCTTCAGTTCTGGAGAGCGGTTGATGAAGTATGACATCCCAGCTATTGTAAAAGGAGATAGATTTGCTTGGTTGCGGGACAACGAATTTGCAAGGCAAGCCTTAGCTGGAGTCAATCCAGTAAATATTGAGCTATTGAAGGAGTTTCCAATCCGCAGCAAACTAGATCCAACTATCTATGGCCCTCCAGAATCAGCAATAACAAAGGAACTACTGGAGCAAGAACTTGGTGGAATAAGCTTGGAAAAGGCTATGGAGGAAAAGAGACTATTTATTATTGATTACCATGACATGCTTTTGCCATTCATCAAGAAGATGAACTCTTTGCCCGAGAGGAAAGCTTATGCCTCCCGGACGATTCTCTTCATTACAAAGGCCGGTGTTCTGCGTCCTATAGCTATTGAGCTTTCTCTTCCTCAGACACTTACTTTGCCGCAAAATAGAAAAGTTTACACACAAGGCCATGATGCCACAGCACACTGGATTTGGAAGTTAGCAAAAGCTCATGTTAGCTCAAATGATGCTGGCATTCATCAACTAGTAAATCATTGGTTAAGGACTCATGCATGCATGGAGCCATATATAATTGCTACTCATAGACAGTTAAGCTCAATGCATCCTATTTACAAGTTGCTACATCCTCATACGCGCTATACAATGGAAATTAATGCACTTGCTCGACAAAGTTTAATAAATGGAGGGGGTATAATTGAAGCATCTTTTAGTCCTGGAAAATATGCCTTGGAGCTTAGTTCAGCAGCTTACAAGAGCATGTGGAGATTTGATATGGAGTCTCTTCCGGCAGATCTTATTCGGAGGGGCATGGCAGTAGAAGACCCTTCAATGCCCTGTGGTGTAAAACTTGTGATTGATGACTACCCTTATGCTGCAGATGGACTTCTAATCTGGTCTGCCATTAAAGAATGGGTAGAATCTTATGTCAAACACTTCTATTCCGAATCAAATTCAATTGCATCGGATGTTGAGCTCCAAGAGTGGTGGAGTGAAATCAAGTGTAAGGGTCACGCTGACAAAAGAAATGAACCTTGGTGGCCTAAACTAGATACCAAAGAGGACCTATCTTTCATACTTACGACAATCATATGGGTTGCTTCAGGTCAACATGCTGCTATAAATTTCGGGCAATACCCTTTTGGAGGATATGTGCCTAACCGTCCTACCCTCATGAGAAAACTTATCCCTCAAGAAAATGATTCTGATTATGAGAAGTTTATTCGAAATCCTCAACTTTTTTTCCTATCATCATTGCCTACTCAACTTCAAGCTACCAAAGTAATGGCTGTTCAGGACACGTTGTCGACTCATTCCCCTGACGAAGAGTATTTGGGTCAAGTGACTCATTTGCATAATCATTGGATCAATGATCAGGAAGTCCTGAAATTGTTTAGTAAATTCTCTACTAGACTTGAGGAGATAGAGGAAATTATAAATGCAAGAAATAAGGATCCAAGTTTGAAAAGTAGAACTGGTGCAGGTGTTCCTCCTTATGAACTTTTGCTTCCTTTGTCAGGACCCGGAGCAACTGGTCGTGGAGTCCCCAACAGTATATCTATATGA
Protein sequence

>Msa0617470

MANSDIPFKCFSEIDKLYIDGVNLGDEENKGIIENLLVGKVMKQVFSSGERLMKYDIPAIVKGDRFAWLRDNEFARQALAGVNPVNIELLKEFPIRSKLDPTIYGPPESAITKELLEQELGGISLEKAMEEKRLFIIDYHDMLLPFIKKMNSLPERKAYASRTILFITKAGVLRPIAIELSLPQTLTLPQNRKVYTQGHDATAHWIWKLAKAHVSSNDAGIHQLVNHWLRTHACMEPYIIATHRQLSSMHPIYKLLHPHTRYTMEINALARQSLINGGGIIEASFSPGKYALELSSAAYKSMWRFDMESLPADLIRRGMAVEDPSMPCGVKLVIDDYPYAADGLLIWSAIKEWVESYVKHFYSESNSIASDVELQEWWSEIKCKGHADKRNEPWWPKLDTKEDLSFILTTIIWVASGQHAAINFGQYPFGGYVPNRPTLMRKLIPQENDSDYEKFIRNPQLFFLSSLPTQLQATKVMAVQDTLSTHSPDEEYLGQVTHLHNHWINDQEVLKLFSKFSTRLEEIEEIINARNKDPSLKSRTGAGVPPYELLLPLSGPGATGRGVPNSISI*