AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0374050


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0374050 MtrunA17_Chr3g0124021 99.666 299 1 0 1 299 1 299 0.0 603
Msa0374050 MtrunA17_Chr3g0115701 59.344 305 96 7 3 299 4 288 9.01e-108 315
Msa0374050 MtrunA17_Chr8g0382291 50.321 312 115 6 5 296 4 295 2.60e-89 270
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0374050 AT4G39860.3 62.963 297 109 1 3 299 4 299 5.49e-127 364
Msa0374050 AT4G39860.4 62.963 297 109 1 3 299 4 299 5.49e-127 364
Msa0374050 AT4G39860.1 62.963 297 109 1 3 299 4 299 5.49e-127 364
Msa0374050 AT4G39860.2 62.626 297 109 2 3 299 4 298 2.72e-124 357
Msa0374050 AT1G78150.1 52.508 299 112 5 3 299 4 274 1.59e-90 271
Msa0374050 AT1G78150.2 52.508 299 112 5 3 299 4 274 1.59e-90 271
Msa0374050 AT1G35780.1 50.980 306 118 7 3 299 4 286 6.96e-87 262
Msa0374050 AT1G78150.3 47.866 328 112 6 3 299 4 303 3.24e-84 255
Msa0374050 AT2G22270.1 44.615 325 140 11 10 299 9 328 1.40e-69 219
Msa0374050 AT2G22270.2 45.423 284 116 10 51 299 10 289 2.99e-59 191
Msa0374050 AT1G35780.2 49.367 237 87 7 71 299 1 212 1.08e-58 187
Msa0374050 AT1G35780.4 49.367 237 87 7 71 299 1 212 1.08e-58 187
Msa0374050 AT1G35780.3 49.367 237 87 7 71 299 1 212 1.08e-58 187

Find 95 sgRNAs with CRISPR-Local

Find 222 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CACCGATGTCCTCAAATTTC+TGG 0.079733 3_1:-73161783 None:intergenic
TTAACAGGGTCTTTGATTTC+TGG 0.136628 3_1:-73163027 None:intergenic
CAGAAGTTTGCAGAGCTTTC+AGG 0.210481 3_1:+73162898 Msa0374050:CDS
GGGCAAAGTAATATCTTATT+TGG 0.218414 3_1:+73162835 Msa0374050:CDS
CTCTCAGCTTTGCCCTGCTC+AGG 0.267205 3_1:-73162969 None:intergenic
GAAATCAAAGACCCTGTTAA+AGG 0.278225 3_1:+73163030 Msa0374050:CDS
GGTATAGAGGTAGGCTTCTT+AGG 0.279404 3_1:-73161557 None:intergenic
CTCACTGGAAATGATATATT+TGG 0.293153 3_1:+73161674 Msa0374050:CDS
GGTTTGCGGGCACCTTTAAC+AGG 0.293722 3_1:-73163042 None:intergenic
TTCTTTGATGTCTTCTCAAC+AGG 0.305067 3_1:-73162865 None:intergenic
ATGGAACGCGGTACAATTTC+AGG 0.309840 3_1:-73161704 None:intergenic
TCCAGTGAGCTCCTTGGTCT+TGG 0.319341 3_1:-73161660 None:intergenic
GCATCTCAGCAAGCAATAAA+TGG 0.332847 3_1:+73161494 Msa0374050:intron
AATTCCGTGTGAACATTAGT+AGG 0.335907 3_1:+73163151 Msa0374050:three_prime_UTR
CTGAAAGCTCTGCAAACTTC+TGG 0.342314 3_1:-73162897 None:intergenic
CTTAGGACTAACACTTTCTT+CGG 0.378680 3_1:-73161540 None:intergenic
AACTAGCATACGCATATATC+AGG 0.379428 3_1:+73161340 Msa0374050:CDS
CATGGCAGCTGCACGAACTT+TGG 0.379756 3_1:+73161724 Msa0374050:CDS
ACCGATGTCCTCAAATTTCT+GGG 0.398231 3_1:-73161782 None:intergenic
ATGTTCAATTATCAGCATCT+AGG 0.418088 3_1:+73163180 Msa0374050:three_prime_UTR
TTCCTGTAATTGTAGCCTGC+TGG 0.421397 3_1:+73162811 Msa0374050:intron
TATTAACATGAAATCTCAAC+TGG 0.433636 3_1:+73163281 Msa0374050:three_prime_UTR
ACTTTCAGCAAGCCATGCTC+AGG 0.438294 3_1:+73161230 Msa0374050:intron
TGGGACTTTGCAAACTGACT+TGG 0.443269 3_1:+73161607 Msa0374050:CDS
TTCACACTCAAAACAACAAT+GGG 0.456072 3_1:+73160175 Msa0374050:exon
TCTCAGCTTTGCCCTGCTCA+GGG 0.467139 3_1:-73162968 None:intergenic
GAGCTTCTTCTTCAGTGAGC+TGG 0.469415 3_1:-73160342 None:intergenic
CTTTGCTACCTCAGGTATAG+AGG 0.474305 3_1:-73161570 None:intergenic
GTCCTCAAATTTCTGGGAAG+AGG 0.478841 3_1:-73161776 None:intergenic
TCACGCTGCTTTGCTACCTC+AGG 0.479040 3_1:-73161578 None:intergenic
GCAATGCTGCTGTCTCCACC+AGG 0.480965 3_1:-73163066 None:intergenic
ATCAGAAGGCTGACGAGAGC+GGG 0.481733 3_1:-73160293 None:intergenic
CTGACGAGAGCGGGTGGCGG+AGG 0.484128 3_1:-73160284 None:intergenic
GAATCAACAACAACGGGAGG+AGG 0.485353 3_1:-73160262 None:intergenic
CAAAGTTCGTGCAGCTGCCA+TGG 0.485787 3_1:-73161723 None:intergenic
CTTACTTAACAGTTAGAAGA+TGG 0.487759 3_1:+73163258 Msa0374050:three_prime_UTR
CGCGGTACAATTTCAGGAGG+AGG 0.490011 3_1:-73161698 None:intergenic
GCGGAGGAATCAACAACAAC+GGG 0.491550 3_1:-73160268 None:intergenic
CTGTAATTGTAGCCTGCTGG+TGG 0.494796 3_1:+73162814 Msa0374050:intron
TTCCATGGAGATGTTCCAGC+AGG 0.495508 3_1:+73162931 Msa0374050:CDS
GCAAAGCTGAGAGAAATAAC+TGG 0.502572 3_1:+73162979 Msa0374050:CDS
AATGCTGCTGTCTCCACCAG+GGG 0.506313 3_1:-73163064 None:intergenic
AACCTCTTCCCAGAAATTTG+AGG 0.507551 3_1:+73161774 Msa0374050:CDS
TGCACGAACTTTGGAATCAA+AGG 0.509149 3_1:+73161733 Msa0374050:CDS
AAGCTCAATCTCTCTCCAAA+AGG 0.514977 3_1:+73160359 Msa0374050:CDS
GCCAAGACCAAGGAGCTCAC+TGG 0.521289 3_1:+73161659 Msa0374050:CDS
AATGTTTAAATCAGATCAGA+TGG 0.524790 3_1:-73160033 None:intergenic
ATATTACTTTGCCCACCAGC+AGG 0.525761 3_1:-73162826 None:intergenic
AGGCTGACGAGAGCGGGTGG+CGG 0.529442 3_1:-73160287 None:intergenic
ATCATTTCCAGTGAGCTCCT+TGG 0.534478 3_1:-73161666 None:intergenic
TGAATGAATGAATGAATGAA+TGG 0.540632 3_1:-73160156 None:intergenic
TGAAATTGTACCGCGTTCCA+TGG 0.543593 3_1:+73161706 Msa0374050:CDS
TCAACAACAACGGGAGGAGG+AGG 0.546104 3_1:-73160259 None:intergenic
ATTCACACTCAAAACAACAA+TGG 0.547288 3_1:+73160174 Msa0374050:exon
ATCAAAGGAAAGCAAGGACA+TGG 0.548897 3_1:+73161748 Msa0374050:CDS
GTTTGCGGGCACCTTTAACA+GGG 0.549073 3_1:-73163041 None:intergenic
GAAGATTCTGCATCAGAAGC+CGG 0.549556 3_1:+73161302 Msa0374050:CDS
GCAAAGCAGCGTGAACTCAG+TGG 0.573236 3_1:+73161587 Msa0374050:CDS
TTGGTGTGTGTCTTTCTCAC+CGG 0.575218 3_1:-73160205 None:intergenic
ACACTTCCGATCTCCTCACT+TGG 0.577893 3_1:+73160227 Msa0374050:CDS
TTTGGAATCAAAGGAAAGCA+AGG 0.578160 3_1:+73161742 Msa0374050:CDS
TCCCAGAAATTTGAGGACAT+CGG 0.579400 3_1:+73161781 Msa0374050:CDS
ATCCTGCTGGAACATCTCCA+TGG 0.579980 3_1:-73162933 None:intergenic
GGCAGTGACATATTTGCTGA+TGG 0.581577 3_1:+73163000 Msa0374050:CDS
GCTACCTCAGGTATAGAGGT+AGG 0.582241 3_1:-73161566 None:intergenic
AAATATCATAATTTAGAGCA+AGG 0.582571 3_1:-73163088 None:intergenic
ATGAAAGAGATGAGTGGACA+TGG 0.583015 3_1:+73161260 Msa0374050:CDS
AGTGAGGAGATCGGAAGTGT+TGG 0.589898 3_1:-73160224 None:intergenic
ATTCCGTGTGAACATTAGTA+GGG 0.590764 3_1:+73163152 Msa0374050:three_prime_UTR
TTCCGATCTCCTCACTTGGT+CGG 0.594758 3_1:+73160231 Msa0374050:CDS
CAATGCTGCTGTCTCCACCA+GGG 0.594808 3_1:-73163065 None:intergenic
TTCCGACCAAGTGAGGAGAT+CGG 0.598387 3_1:-73160233 None:intergenic
CGTGCAGCTGCCATGGAACG+CGG 0.599947 3_1:-73161716 None:intergenic
AACAACAATGGGAAGCACTC+CGG 0.604363 3_1:+73160186 Msa0374050:exon
TATAAAATGAAAGAGATGAG+TGG 0.604599 3_1:+73161254 Msa0374050:CDS
CAAAGCAGCGTGAACTCAGT+GGG 0.607370 3_1:+73161588 Msa0374050:CDS
ACCTTGCTGATTCTATCAGA+AGG 0.610704 3_1:-73160307 None:intergenic
AGAAGGCTGACGAGAGCGGG+TGG 0.616356 3_1:-73160290 None:intergenic
AAGTGAAGGAACAACGTGGA+TGG 0.619054 3_1:-73160132 None:intergenic
TATCAGAAGGCTGACGAGAG+CGG 0.623249 3_1:-73160294 None:intergenic
GAGGAATCAACAACAACGGG+AGG 0.627908 3_1:-73160265 None:intergenic
GAGGAACTTCCGACCAAGTG+AGG 0.628730 3_1:-73160240 None:intergenic
ATGCTGCTGTCTCCACCAGG+GGG 0.629578 3_1:-73163063 None:intergenic
TTACCCTACTAATGTTCACA+CGG 0.631075 3_1:-73163155 None:intergenic
GCGGTACAATTTCAGGAGGA+GGG 0.631603 3_1:-73161697 None:intergenic
AATGAATGAATGGAAAGTGA+AGG 0.637482 3_1:-73160146 None:intergenic
GCCTTCTGATAGAATCAGCA+AGG 0.638816 3_1:+73160306 Msa0374050:CDS
TGTAATTGTAGCCTGCTGGT+GGG 0.644942 3_1:+73162815 Msa0374050:intron
CTTTCAGCAAGCCATGCTCA+GGG 0.644956 3_1:+73161231 Msa0374050:intron
AATATCAAATGCCAAGACCA+AGG 0.645109 3_1:+73161649 Msa0374050:CDS
GGCGGAGGAATCAACAACAA+CGG 0.655351 3_1:-73160269 None:intergenic
TCAAAGGAAAGCAAGGACAT+GGG 0.665351 3_1:+73161749 Msa0374050:CDS
GAAGCCTACCTCTATACCTG+AGG 0.688793 3_1:+73161562 Msa0374050:CDS
GAACGCGGTACAATTTCAGG+AGG 0.704954 3_1:-73161701 None:intergenic
TGGAAAGTGAAGGAACAACG+TGG 0.826765 3_1:-73160136 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! CAATTCAAATTGAAAATAAA+CGG - chr3_1:73160613-73160632 None:intergenic 15.0%
!!! TCAAAATCTACTTTTAAATT+TGG + chr3_1:73160729-73160748 Msa0374050:intron 15.0%
!!! TATAATATTTTCTTATGACA+TGG + chr3_1:73161906-73161925 Msa0374050:intron 15.0%
!!! ACTCTTCATTTTTATTTTTT+TGG + chr3_1:73162074-73162093 Msa0374050:intron 15.0%
!!! CTCTTCATTTTTATTTTTTT+GGG + chr3_1:73162075-73162094 Msa0374050:intron 15.0%
!!! TCTTCATTTTTATTTTTTTG+GGG + chr3_1:73162076-73162095 Msa0374050:intron 15.0%
!!! TAAAATTTAAGTCTGTTTTT+GGG + chr3_1:73162384-73162403 Msa0374050:intron 15.0%
!!! ATCTGTTTCTTAATTTGAAA+TGG + chr3_1:73160500-73160519 Msa0374050:intron 20.0%
!!! AAAAAAATCACTTTTTTGTG+TGG - chr3_1:73160954-73160973 None:intergenic 20.0%
!!! ATTAGCTTTTTTCAAATACA+AGG - chr3_1:73161017-73161036 None:intergenic 20.0%
!! TCATATTTAAGTGTTTGTTT+AGG - chr3_1:73161104-73161123 None:intergenic 20.0%
!!! AGAAAAAAATCTGAAACAAA+CGG + chr3_1:73161141-73161160 Msa0374050:intron 20.0%
!!! ATTCACAATTTTCATAACAA+AGG - chr3_1:73161169-73161188 None:intergenic 20.0%
!! TCAATTTGATGTTTGAAAAA+TGG - chr3_1:73161417-73161436 None:intergenic 20.0%
!!! ATATTTAAATTTTGCATTCC+AGG - chr3_1:73162048-73162067 None:intergenic 20.0%
!!! GTAAAATTTAAGTCTGTTTT+TGG + chr3_1:73162383-73162402 Msa0374050:intron 20.0%
!! AAACACATAAAAGAAACAAA+TGG - chr3_1:73162621-73162640 None:intergenic 20.0%
!!! AAATATCATAATTTAGAGCA+AGG - chr3_1:73163091-73163110 None:intergenic 20.0%
!! ATAAAAATCCTACATCAAAA+GGG - chr3_1:73163131-73163150 None:intergenic 20.0%
!! TATAAAAATCCTACATCAAA+AGG - chr3_1:73163132-73163151 None:intergenic 20.0%
! AATGTTTAAATCAGATCAGA+TGG - chr3_1:73160036-73160055 None:intergenic 25.0%
! TGAATGAATGAATGAATGAA+TGG - chr3_1:73160159-73160178 None:intergenic 25.0%
! AATTAAGAAACAGATCTATG+CGG - chr3_1:73160495-73160514 None:intergenic 25.0%
!!! GAATTAAAGAAAGTGTTTTC+AGG + chr3_1:73160582-73160601 Msa0374050:intron 25.0%
! TTTAGTTGAATCAAGATTAG+TGG + chr3_1:73160657-73160676 Msa0374050:intron 25.0%
!!! CTCTAAAATGAAAAGCTATA+AGG - chr3_1:73161040-73161059 None:intergenic 25.0%
!! GAAAAAAATCTGAAACAAAC+GGG + chr3_1:73161142-73161161 Msa0374050:intron 25.0%
!! AAAAAAATCTGAAACAAACG+GGG + chr3_1:73161143-73161162 Msa0374050:intron 25.0%
! TATAAAATGAAAGAGATGAG+TGG + chr3_1:73161254-73161273 Msa0374050:CDS 25.0%
!! AGTTTTTGAATTAACAGAAC+CGG - chr3_1:73161324-73161343 None:intergenic 25.0%
! GCATATATCAGGTTTATATT+TGG + chr3_1:73161351-73161370 Msa0374050:intron 25.0%
! ATGTTTGAAAAATGGCTATA+AGG - chr3_1:73161409-73161428 None:intergenic 25.0%
! TTCAAACATCAAATTGAACT+CGG + chr3_1:73161420-73161439 Msa0374050:intron 25.0%
!!! TCATTTTTATTTTTTTGGGG+TGG + chr3_1:73162079-73162098 Msa0374050:intron 25.0%
!!! CATTTTTATTTTTTTGGGGT+GGG + chr3_1:73162080-73162099 Msa0374050:intron 25.0%
!!! ATTTTTATTTTTTTGGGGTG+GGG + chr3_1:73162081-73162100 Msa0374050:intron 25.0%
!!! TGTCTTTGAAATTTCTATGA+TGG + chr3_1:73162339-73162358 Msa0374050:intron 25.0%
! AAAGAAACAAATGGACAAAT+GGG - chr3_1:73162612-73162631 None:intergenic 25.0%
! AAAAGAAACAAATGGACAAA+TGG - chr3_1:73162613-73162632 None:intergenic 25.0%
!! AAAACTATTTTCTCACAAAC+TGG - chr3_1:73162726-73162745 None:intergenic 25.0%
! AACTCGTAAGTCATAAATAT+GGG - chr3_1:73162768-73162787 None:intergenic 25.0%
! TAACTCGTAAGTCATAAATA+TGG - chr3_1:73162769-73162788 None:intergenic 25.0%
! TAAAAATCCTACATCAAAAG+GGG - chr3_1:73163130-73163149 None:intergenic 25.0%
! TATTAACATGAAATCTCAAC+TGG + chr3_1:73163281-73163300 Msa0374050:three_prime_UTR 25.0%
AATGAATGAATGGAAAGTGA+AGG - chr3_1:73160149-73160168 None:intergenic 30.0%
ATTCACACTCAAAACAACAA+TGG + chr3_1:73160174-73160193 Msa0374050:exon 30.0%
TTCACACTCAAAACAACAAT+GGG + chr3_1:73160175-73160194 Msa0374050:exon 30.0%
!! AAATGAAAGTACGTACCTTT+TGG - chr3_1:73160377-73160396 None:intergenic 30.0%
GTAAAAGATCTGATCTGAAA+AGG - chr3_1:73160411-73160430 None:intergenic 30.0%
!!! AGCTTTTTTCAAATACAAGG+AGG - chr3_1:73161014-73161033 None:intergenic 30.0%
GAAAATTGTGAATCTAAGCT+AGG + chr3_1:73161176-73161195 Msa0374050:intron 30.0%
CTCACTGGAAATGATATATT+TGG + chr3_1:73161674-73161693 Msa0374050:CDS 30.0%
TTCTAATGTAAGTGTCTTCT+AGG + chr3_1:73161811-73161830 Msa0374050:intron 30.0%
TTATCGATATGAATTGAGCT+AGG + chr3_1:73161929-73161948 Msa0374050:intron 30.0%
AAGATTCAGGTAGTTGTTAA+TGG - chr3_1:73161974-73161993 None:intergenic 30.0%
!!! TTTTTATTTTTTTGGGGTGG+GGG + chr3_1:73162082-73162101 Msa0374050:intron 30.0%
!! TGGCTTCAATTTAATTTGAC+AGG - chr3_1:73162274-73162293 None:intergenic 30.0%
AAGACAATGTAACAAACTGA+TGG - chr3_1:73162325-73162344 None:intergenic 30.0%
TAAGATGTGTGTGTTATGTT+TGG + chr3_1:73162453-73162472 Msa0374050:intron 30.0%
! ATTTGGCAAAAGCTACATTT+TGG - chr3_1:73162531-73162550 None:intergenic 30.0%
ACTCGTAAGTCATAAATATG+GGG - chr3_1:73162767-73162786 None:intergenic 30.0%
GGGCAAAGTAATATCTTATT+TGG + chr3_1:73162835-73162854 Msa0374050:CDS 30.0%
! TCAGGCAATAATATTTTCCA+TGG + chr3_1:73162916-73162935 Msa0374050:CDS 30.0%
ATGTTCAATTATCAGCATCT+AGG + chr3_1:73163180-73163199 Msa0374050:three_prime_UTR 30.0%
CTTACTTAACAGTTAGAAGA+TGG + chr3_1:73163258-73163277 Msa0374050:three_prime_UTR 30.0%
AAGATCTGATCTGAAAAGGA+AGG - chr3_1:73160407-73160426 None:intergenic 35.0%
GATCGAAGAACGATCAAAAA+AGG - chr3_1:73160447-73160466 None:intergenic 35.0%
ATGCAATCTGCAATCTTATG+TGG + chr3_1:73160634-73160653 Msa0374050:intron 35.0%
ACACATTCACGTAGTTAACA+TGG - chr3_1:73160784-73160803 None:intergenic 35.0%
! TTCATTTTATACCCTGAGCA+TGG - chr3_1:73161245-73161264 None:intergenic 35.0%
! GAGTGGACATGGTATATTTT+CGG + chr3_1:73161271-73161290 Msa0374050:CDS 35.0%
! CATGGTATATTTTCGGACAA+TGG + chr3_1:73161278-73161297 Msa0374050:CDS 35.0%
AACTAGCATACGCATATATC+AGG + chr3_1:73161340-73161359 Msa0374050:CDS 35.0%
CTTAGGACTAACACTTTCTT+CGG - chr3_1:73161543-73161562 None:intergenic 35.0%
AATATCAAATGCCAAGACCA+AGG + chr3_1:73161649-73161668 Msa0374050:CDS 35.0%
! TTTGGAATCAAAGGAAAGCA+AGG + chr3_1:73161742-73161761 Msa0374050:CDS 35.0%
AACAACTACCTGAATCTTAG+TGG + chr3_1:73161976-73161995 Msa0374050:intron 35.0%
!!! TAGGGGGTAAGATTTTAGTT+TGG + chr3_1:73162106-73162125 Msa0374050:intron 35.0%
!!! AGGGGGTAAGATTTTAGTTT+GGG + chr3_1:73162107-73162126 Msa0374050:intron 35.0%
!!! TAAGATTTTAGTTTGGGGGT+TGG + chr3_1:73162113-73162132 Msa0374050:intron 35.0%
!!! AAGATTTTAGTTTGGGGGTT+GGG + chr3_1:73162114-73162133 Msa0374050:intron 35.0%
!!! TTAAGTCTGTTTTTGGGTGT+TGG + chr3_1:73162390-73162409 Msa0374050:intron 35.0%
!!! TAAGTCTGTTTTTGGGTGTT+GGG + chr3_1:73162391-73162410 Msa0374050:intron 35.0%
GTGTGTTATGTTTGGATTGA+CGG + chr3_1:73162461-73162480 Msa0374050:intron 35.0%
! TGTAGCTTTTGCCAAATTCT+TGG + chr3_1:73162534-73162553 Msa0374050:intron 35.0%
GAGATTGACGAAATCACAAT+TGG - chr3_1:73162563-73162582 None:intergenic 35.0%
ATAAGCAGTAGGTACTTTGT+AGG - chr3_1:73162670-73162689 None:intergenic 35.0%
TGTTGAGCTAAATAAGCAGT+AGG - chr3_1:73162681-73162700 None:intergenic 35.0%
! CTATTTTCTCACAAACTGGA+CGG - chr3_1:73162722-73162741 None:intergenic 35.0%
CTACAATTACAGGAAAAGGA+AGG - chr3_1:73162806-73162825 None:intergenic 35.0%
TTCTTTGATGTCTTCTCAAC+AGG - chr3_1:73162868-73162887 None:intergenic 35.0%
! TTAACAGGGTCTTTGATTTC+TGG - chr3_1:73163030-73163049 None:intergenic 35.0%
GAAATCAAAGACCCTGTTAA+AGG + chr3_1:73163030-73163049 Msa0374050:CDS 35.0%
AATTCCGTGTGAACATTAGT+AGG + chr3_1:73163151-73163170 Msa0374050:three_prime_UTR 35.0%
ATTCCGTGTGAACATTAGTA+GGG + chr3_1:73163152-73163171 Msa0374050:three_prime_UTR 35.0%
TTACCCTACTAATGTTCACA+CGG - chr3_1:73163158-73163177 None:intergenic 35.0%
!! ACCTTGCTGATTCTATCAGA+AGG - chr3_1:73160310-73160329 None:intergenic 40.0%
AAGCTCAATCTCTCTCCAAA+AGG + chr3_1:73160359-73160378 Msa0374050:CDS 40.0%
ATCGTTGGATTGAGATCAGA+CGG - chr3_1:73160756-73160775 None:intergenic 40.0%
GTTAACATGGATGTGATCGT+TGG - chr3_1:73160771-73160790 None:intergenic 40.0%
TGTGAATCTAAGCTAGGAGA+TGG + chr3_1:73161182-73161201 Msa0374050:intron 40.0%
ATGAAAGAGATGAGTGGACA+TGG + chr3_1:73161260-73161279 Msa0374050:CDS 40.0%
TCAAACTGGACTCAAGATCA+AGG - chr3_1:73161384-73161403 None:intergenic 40.0%
ATGGCTATAAGGTCTCAAAC+TGG - chr3_1:73161398-73161417 None:intergenic 40.0%
GCATCTCAGCAAGCAATAAA+TGG + chr3_1:73161494-73161513 Msa0374050:intron 40.0%
!! TGCACGAACTTTGGAATCAA+AGG + chr3_1:73161733-73161752 Msa0374050:CDS 40.0%
ATCAAAGGAAAGCAAGGACA+TGG + chr3_1:73161748-73161767 Msa0374050:CDS 40.0%
TCAAAGGAAAGCAAGGACAT+GGG + chr3_1:73161749-73161768 Msa0374050:CDS 40.0%
AACCTCTTCCCAGAAATTTG+AGG + chr3_1:73161774-73161793 Msa0374050:CDS 40.0%
TCCCAGAAATTTGAGGACAT+CGG + chr3_1:73161781-73161800 Msa0374050:CDS 40.0%
ACCGATGTCCTCAAATTTCT+GGG - chr3_1:73161785-73161804 None:intergenic 40.0%
ATTCATCGCCACTAAGATTC+AGG - chr3_1:73161987-73162006 None:intergenic 40.0%
! GAAAGCATAAGGTAAACTGG+TGG - chr3_1:73162026-73162045 None:intergenic 40.0%
! CAGGAAAGCATAAGGTAAAC+TGG - chr3_1:73162029-73162048 None:intergenic 40.0%
CAGTTTACCTTATGCTTTCC+TGG + chr3_1:73162027-73162046 Msa0374050:intron 40.0%
! TTGCATTCCAGGAAAGCATA+AGG - chr3_1:73162037-73162056 None:intergenic 40.0%
!!! GGGGGTAAGATTTTAGTTTG+GGG + chr3_1:73162108-73162127 Msa0374050:intron 40.0%
!!! GGGGTAAGATTTTAGTTTGG+GGG + chr3_1:73162109-73162128 Msa0374050:intron 40.0%
!!! AGATTTTAGTTTGGGGGTTG+GGG + chr3_1:73162115-73162134 Msa0374050:intron 40.0%
TAATACTGTTGCAGCACATG+AGG + chr3_1:73162187-73162206 Msa0374050:intron 40.0%
GTGTAAGATGTCCACAAGAT+TGG - chr3_1:73162214-73162233 None:intergenic 40.0%
! TAACAAACTGATGGACCTTC+CGG - chr3_1:73162316-73162335 None:intergenic 40.0%
!!! AAGTCTGTTTTTGGGTGTTG+GGG + chr3_1:73162392-73162411 Msa0374050:intron 40.0%
CGGTGAGTTTGGTAAAATCA+CGG + chr3_1:73162481-73162500 Msa0374050:intron 40.0%
! AGCTTTTGCCAAATTCTTGG+TGG + chr3_1:73162537-73162556 Msa0374050:intron 40.0%
ACAATTGGCCACCAAGAATT+TGG - chr3_1:73162548-73162567 None:intergenic 40.0%
AATGGGACTGAGAACTTGAT+TGG - chr3_1:73162595-73162614 None:intergenic 40.0%
CAGGCTACAATTACAGGAAA+AGG - chr3_1:73162810-73162829 None:intergenic 40.0%
GCAAAGCTGAGAGAAATAAC+TGG + chr3_1:73162979-73162998 Msa0374050:CDS 40.0%
! AAGCTTACCCCTTTTGATGT+AGG + chr3_1:73163120-73163139 Msa0374050:three_prime_UTR 40.0%
AAGTGAAGGAACAACGTGGA+TGG - chr3_1:73160135-73160154 None:intergenic 45.0%
TGGAAAGTGAAGGAACAACG+TGG - chr3_1:73160139-73160158 None:intergenic 45.0%
!! AACAACAATGGGAAGCACTC+CGG + chr3_1:73160186-73160205 Msa0374050:exon 45.0%
TTGGTGTGTGTCTTTCTCAC+CGG - chr3_1:73160208-73160227 None:intergenic 45.0%
GCCTTCTGATAGAATCAGCA+AGG + chr3_1:73160306-73160325 Msa0374050:CDS 45.0%
GAAGATTCTGCATCAGAAGC+CGG + chr3_1:73161302-73161321 Msa0374050:CDS 45.0%
GGTATAGAGGTAGGCTTCTT+AGG - chr3_1:73161560-73161579 None:intergenic 45.0%
CTTTGCTACCTCAGGTATAG+AGG - chr3_1:73161573-73161592 None:intergenic 45.0%
TGGGACTTTGCAAACTGACT+TGG + chr3_1:73161607-73161626 Msa0374050:CDS 45.0%
ATCATTTCCAGTGAGCTCCT+TGG - chr3_1:73161669-73161688 None:intergenic 45.0%
ATGGAACGCGGTACAATTTC+AGG - chr3_1:73161707-73161726 None:intergenic 45.0%
TGAAATTGTACCGCGTTCCA+TGG + chr3_1:73161706-73161725 Msa0374050:CDS 45.0%
! GTCCTCAAATTTCTGGGAAG+AGG - chr3_1:73161779-73161798 None:intergenic 45.0%
CACCGATGTCCTCAAATTTC+TGG - chr3_1:73161786-73161805 None:intergenic 45.0%
! GTAAACTGGTGGATGGTCAA+GGG - chr3_1:73162015-73162034 None:intergenic 45.0%
GCATAAGGTAAACTGGTGGA+TGG - chr3_1:73162022-73162041 None:intergenic 45.0%
!!! ATTTTTTTGGGGTGGGGGTT+AGG + chr3_1:73162087-73162106 Msa0374050:intron 45.0%
!!! TTTTTTTGGGGTGGGGGTTA+GGG + chr3_1:73162088-73162107 Msa0374050:intron 45.0%
!!! GATTTTAGTTTGGGGGTTGG+GGG + chr3_1:73162116-73162135 Msa0374050:intron 45.0%
!!! ATTTTAGTTTGGGGGTTGGG+GGG + chr3_1:73162117-73162136 Msa0374050:intron 45.0%
GACAGGCACATGTTAAGAGA+AGG - chr3_1:73162257-73162276 None:intergenic 45.0%
GATGCAATGCATGTGCAGTT+TGG - chr3_1:73162294-73162313 None:intergenic 45.0%
AACTGCACATGCATTGCATC+CGG + chr3_1:73162294-73162313 Msa0374050:intron 45.0%
!!! AGTCTGTTTTTGGGTGTTGG+GGG + chr3_1:73162393-73162412 Msa0374050:intron 45.0%
GTTTGGATTGACGGTGAGTT+TGG + chr3_1:73162470-73162489 Msa0374050:intron 45.0%
CTCACAAACTGGACGGTTTA+AGG - chr3_1:73162715-73162734 None:intergenic 45.0%
CAGGAAAAGGAAGGTTAACC+TGG - chr3_1:73162797-73162816 None:intergenic 45.0%
TTCCTGTAATTGTAGCCTGC+TGG + chr3_1:73162811-73162830 Msa0374050:intron 45.0%
TGTAATTGTAGCCTGCTGGT+GGG + chr3_1:73162815-73162834 Msa0374050:intron 45.0%
ATATTACTTTGCCCACCAGC+AGG - chr3_1:73162829-73162848 None:intergenic 45.0%
CTGAAAGCTCTGCAAACTTC+TGG - chr3_1:73162900-73162919 None:intergenic 45.0%
CAGAAGTTTGCAGAGCTTTC+AGG + chr3_1:73162898-73162917 Msa0374050:CDS 45.0%
!! GATTTTTCAGCTGATCCTGC+TGG - chr3_1:73162949-73162968 None:intergenic 45.0%
AGCTGAAAAATCCCTGAGCA+GGG + chr3_1:73162957-73162976 Msa0374050:CDS 45.0%
! GGCAGTGACATATTTGCTGA+TGG + chr3_1:73163000-73163019 Msa0374050:CDS 45.0%
! AGTGAGGAGATCGGAAGTGT+TGG - chr3_1:73160227-73160246 None:intergenic 50.0%
ACACTTCCGATCTCCTCACT+TGG + chr3_1:73160227-73160246 Msa0374050:CDS 50.0%
TTCCGATCTCCTCACTTGGT+CGG + chr3_1:73160231-73160250 Msa0374050:CDS 50.0%
TTCCGACCAAGTGAGGAGAT+CGG - chr3_1:73160236-73160255 None:intergenic 50.0%
GAATCAACAACAACGGGAGG+AGG - chr3_1:73160265-73160284 None:intergenic 50.0%
GAGGAATCAACAACAACGGG+AGG - chr3_1:73160268-73160287 None:intergenic 50.0%
GCGGAGGAATCAACAACAAC+GGG - chr3_1:73160271-73160290 None:intergenic 50.0%
GGCGGAGGAATCAACAACAA+CGG - chr3_1:73160272-73160291 None:intergenic 50.0%
TATCAGAAGGCTGACGAGAG+CGG - chr3_1:73160297-73160316 None:intergenic 50.0%
GAGCTTCTTCTTCAGTGAGC+TGG - chr3_1:73160345-73160364 None:intergenic 50.0%
ACTTTCAGCAAGCCATGCTC+AGG + chr3_1:73161230-73161249 Msa0374050:intron 50.0%
CTTTCAGCAAGCCATGCTCA+GGG + chr3_1:73161231-73161250 Msa0374050:intron 50.0%
GAAGCCTACCTCTATACCTG+AGG + chr3_1:73161562-73161581 Msa0374050:CDS 50.0%
GCTACCTCAGGTATAGAGGT+AGG - chr3_1:73161569-73161588 None:intergenic 50.0%
CAAAGCAGCGTGAACTCAGT+GGG + chr3_1:73161588-73161607 Msa0374050:CDS 50.0%
GCGGTACAATTTCAGGAGGA+GGG - chr3_1:73161700-73161719 None:intergenic 50.0%
GAACGCGGTACAATTTCAGG+AGG - chr3_1:73161704-73161723 None:intergenic 50.0%
! GGTAAACTGGTGGATGGTCA+AGG - chr3_1:73162016-73162035 None:intergenic 50.0%
!!! TTTTTTGGGGTGGGGGTTAG+GGG + chr3_1:73162089-73162108 Msa0374050:intron 50.0%
GCACATGAGGACCAATCTTG+TGG + chr3_1:73162200-73162219 Msa0374050:intron 50.0%
!!! TGTTTTTGGGTGTTGGGGGT+GGG + chr3_1:73162397-73162416 Msa0374050:intron 50.0%
GACTTACGAGTTACGACTCC+AGG + chr3_1:73162776-73162795 Msa0374050:intron 50.0%
CACCAGCAGGCTACAATTAC+AGG - chr3_1:73162816-73162835 None:intergenic 50.0%
CTGTAATTGTAGCCTGCTGG+TGG + chr3_1:73162814-73162833 Msa0374050:intron 50.0%
TTCCATGGAGATGTTCCAGC+AGG + chr3_1:73162931-73162950 Msa0374050:CDS 50.0%
ATCCTGCTGGAACATCTCCA+TGG - chr3_1:73162936-73162955 None:intergenic 50.0%
CAGCTGAAAAATCCCTGAGC+AGG + chr3_1:73162956-73162975 Msa0374050:CDS 50.0%
GTTTGCGGGCACCTTTAACA+GGG - chr3_1:73163044-73163063 None:intergenic 50.0%
GAGGAACTTCCGACCAAGTG+AGG - chr3_1:73160243-73160262 None:intergenic 55.0%
TCAACAACAACGGGAGGAGG+AGG - chr3_1:73160262-73160281 None:intergenic 55.0%
ATCAGAAGGCTGACGAGAGC+GGG - chr3_1:73160296-73160315 None:intergenic 55.0%
! TCACGCTGCTTTGCTACCTC+AGG - chr3_1:73161581-73161600 None:intergenic 55.0%
GCAAAGCAGCGTGAACTCAG+TGG + chr3_1:73161587-73161606 Msa0374050:CDS 55.0%
TCCAGTGAGCTCCTTGGTCT+TGG - chr3_1:73161663-73161682 None:intergenic 55.0%
CGCGGTACAATTTCAGGAGG+AGG - chr3_1:73161701-73161720 None:intergenic 55.0%
CAAAGTTCGTGCAGCTGCCA+TGG - chr3_1:73161726-73161745 None:intergenic 55.0%
CATGGCAGCTGCACGAACTT+TGG + chr3_1:73161724-73161743 Msa0374050:CDS 55.0%
!!! TTTTTGGGGTGGGGGTTAGG+GGG + chr3_1:73162090-73162109 Msa0374050:intron 55.0%
GCACATGCATTGCATCCGGA+AGG + chr3_1:73162298-73162317 Msa0374050:intron 55.0%
!!! CTGTTTTTGGGTGTTGGGGG+TGG + chr3_1:73162396-73162415 Msa0374050:intron 55.0%
!!! GTTTTTGGGTGTTGGGGGTG+GGG + chr3_1:73162398-73162417 Msa0374050:intron 55.0%
TCTCAGCTTTGCCCTGCTCA+GGG - chr3_1:73162971-73162990 None:intergenic 55.0%
GGTTTGCGGGCACCTTTAAC+AGG - chr3_1:73163045-73163064 None:intergenic 55.0%
AATGCTGCTGTCTCCACCAG+GGG - chr3_1:73163067-73163086 None:intergenic 55.0%
CAATGCTGCTGTCTCCACCA+GGG - chr3_1:73163068-73163087 None:intergenic 55.0%
GCCAAGACCAAGGAGCTCAC+TGG + chr3_1:73161659-73161678 Msa0374050:CDS 60.0%
CTCTCAGCTTTGCCCTGCTC+AGG - chr3_1:73162972-73162991 None:intergenic 60.0%
TGTCTCCACCAGGGGGTTTG+CGG - chr3_1:73163059-73163078 None:intergenic 60.0%
ATGCTGCTGTCTCCACCAGG+GGG - chr3_1:73163066-73163085 None:intergenic 60.0%
GCAATGCTGCTGTCTCCACC+AGG - chr3_1:73163069-73163088 None:intergenic 60.0%
AGAAGGCTGACGAGAGCGGG+TGG - chr3_1:73160293-73160312 None:intergenic 65.0%
CGTGCAGCTGCCATGGAACG+CGG - chr3_1:73161719-73161738 None:intergenic 65.0%
!! AAAGGTGCCCGCAAACCCCC+TGG + chr3_1:73163048-73163067 Msa0374050:CDS 65.0%
GTCTCCACCAGGGGGTTTGC+GGG - chr3_1:73163058-73163077 None:intergenic 65.0%
AGGCTGACGAGAGCGGGTGG+CGG - chr3_1:73160290-73160309 None:intergenic 70.0%
! CTGACGAGAGCGGGTGGCGG+AGG - chr3_1:73160287-73160306 None:intergenic 75.0%
GGTGCCCGCAAACCCCCTGG+TGG + chr3_1:73163051-73163070 Msa0374050:CDS 75.0%
Chromosome Type Strat End Strand Name
chr3_1 gene 73159985 73163341 73159985 ID=Msa0374050;Name=Msa0374050
chr3_1 mRNA 73159985 73163341 73159985 ID=Msa0374050-mRNA-1;Parent=Msa0374050;Name=Msa0374050-mRNA-1;_AED=0.05;_eAED=0.05;_QI=208|1|1|1|1|1|4|243|299
chr3_1 exon 73159985 73160380 73159985 ID=Msa0374050-mRNA-1:exon:16571;Parent=Msa0374050-mRNA-1
chr3_1 exon 73161238 73161361 73161238 ID=Msa0374050-mRNA-1:exon:16572;Parent=Msa0374050-mRNA-1
chr3_1 exon 73161503 73161817 73161503 ID=Msa0374050-mRNA-1:exon:16573;Parent=Msa0374050-mRNA-1
chr3_1 exon 73162826 73163341 73162826 ID=Msa0374050-mRNA-1:exon:16574;Parent=Msa0374050-mRNA-1
chr3_1 five_prime_UTR 73159985 73160192 73159985 ID=Msa0374050-mRNA-1:five_prime_utr;Parent=Msa0374050-mRNA-1
chr3_1 CDS 73160193 73160380 73160193 ID=Msa0374050-mRNA-1:cds;Parent=Msa0374050-mRNA-1
chr3_1 CDS 73161238 73161361 73161238 ID=Msa0374050-mRNA-1:cds;Parent=Msa0374050-mRNA-1
chr3_1 CDS 73161503 73161817 73161503 ID=Msa0374050-mRNA-1:cds;Parent=Msa0374050-mRNA-1
chr3_1 CDS 73162826 73163098 73162826 ID=Msa0374050-mRNA-1:cds;Parent=Msa0374050-mRNA-1
chr3_1 three_prime_UTR 73163099 73163341 73163099 ID=Msa0374050-mRNA-1:three_prime_utr;Parent=Msa0374050-mRNA-1
Gene Sequence

>Msa0374050

ATGGGAAGCACTCCGGTGAGAAAGACACACACCAACACTTCCGATCTCCTCACTTGGTCGGAAGTTCCTCCTCCTCCCGTTGTTGTTGATTCCTCCGCCACCCGCTCTCGTCAGCCTTCTGATAGAATCAGCAAGGTTCTCAATAGTGACCAGCTCACTGAAGAAGAAGCTCAATCTCTCTCCAAAAGCAAGCCATGCTCAGGGTATAAAATGAAAGAGATGAGTGGACATGGTATATTTTCGGACAATGGTGAAGATTCTGCATCAGAAGCCGGTTCTGTTAATTCAAAAACTAGCATACGCATATATCAGCAAGCAATAAATGGAGTTAGTCAGATATCATTCAGCACCGAAGAAAGTGTTAGTCCTAAGAAGCCTACCTCTATACCTGAGGTAGCAAAGCAGCGTGAACTCAGTGGGACTTTGCAAACTGACTTGGACGCAAAGACTCAGAAGCAAATATCAAATGCCAAGACCAAGGAGCTCACTGGAAATGATATATTTGGCCCTCCTCCTGAAATTGTACCGCGTTCCATGGCAGCTGCACGAACTTTGGAATCAAAGGAAAGCAAGGACATGGGAGAACCTCTTCCCAGAAATTTGAGGACATCGGTGAAAGTTTCTAATCCTGCTGGTGGGCAAAGTAATATCTTATTTGGCGACGCACCTGTTGAGAAGACATCAAAGAAGATACATGACCAGAAGTTTGCAGAGCTTTCAGGCAATAATATTTTCCATGGAGATGTTCCAGCAGGATCAGCTGAAAAATCCCTGAGCAGGGCAAAGCTGAGAGAAATAACTGGCAGTGACATATTTGCTGATGGAAAACCAGAAATCAAAGACCCTGTTAAAGGTGCCCGCAAACCCCCTGGTGGAGACAGCAGCATTGCCTTGCTCTAA

Protein sequence

>Msa0374050

MGSTPVRKTHTNTSDLLTWSEVPPPPVVVDSSATRSRQPSDRISKVLNSDQLTEEEAQSLSKSKPCSGYKMKEMSGHGIFSDNGEDSASEAGSVNSKTSIRIYQQAINGVSQISFSTEESVSPKKPTSIPEVAKQRELSGTLQTDLDAKTQKQISNAKTKELTGNDIFGPPPEIVPRSMAAARTLESKESKDMGEPLPRNLRTSVKVSNPAGGQSNILFGDAPVEKTSKKIHDQKFAELSGNNIFHGDVPAGSAEKSLSRAKLREITGSDIFADGKPEIKDPVKGARKPPGGDSSIALL*