Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0398410 | XP_003598897.1 | 99.130 | 115 | 1 | 0 | 1 | 115 | 1 | 115 | 3.09e-77 | 233 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0398410 | sp|Q39080|DAD1_ARATH | 92.174 | 115 | 9 | 0 | 1 | 115 | 1 | 115 | 1.09e-74 | 219 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0398410 | G7J1N4 | 99.130 | 115 | 1 | 0 | 1 | 115 | 1 | 115 | 1.48e-77 | 233 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0100890 | Msa0398410 | 0.808504 | 2.998133e-50 | -8.615850e-47 |
| Msa0220410 | Msa0398410 | -0.806522 | 7.896137e-50 | -8.615850e-47 |
| Msa0374050 | Msa0398410 | 0.807246 | 5.550121e-50 | -8.615850e-47 |
| Msa0398410 | Msa0416210 | 0.804500 | 2.096829e-49 | -8.615850e-47 |
| Msa0398410 | Msa0423230 | 0.812059 | 5.129495e-51 | -8.615850e-47 |
| Msa0398410 | Msa0469430 | 0.840109 | 1.059528e-57 | -8.615850e-47 |
| Msa0398410 | Msa0515110 | 0.827118 | 1.866358e-54 | -8.615850e-47 |
| Msa0398410 | Msa0831820 | 0.805678 | 1.188568e-49 | -8.615850e-47 |
| Msa0398410 | Msa0926760 | 0.803374 | 3.594128e-49 | -8.615850e-47 |
| Msa0398410 | Msa1025200 | 0.819813 | 9.534254e-53 | -8.615850e-47 |
| Msa0398410 | Msa1025220 | 0.824395 | 8.260602e-54 | -8.615850e-47 |
| Msa0398410 | Msa1144610 | 0.804850 | 1.772462e-49 | -8.615850e-47 |
| Msa0398410 | Msa1144990 | 0.805577 | 1.248381e-49 | -8.615850e-47 |
| Msa0398410 | Msa1269250 | -0.801151 | 1.030999e-48 | -8.615850e-47 |
| Msa0398410 | Msa1296090 | 0.810651 | 1.036705e-50 | -8.615850e-47 |
| Msa0398410 | Msa1334560 | 0.808628 | 2.820863e-50 | -8.615850e-47 |
| Msa0398410 | Msa1368170 | 0.825517 | 4.488968e-54 | -8.615850e-47 |
| Msa0398410 | Msa1385570 | 0.816162 | 6.374244e-52 | -8.615850e-47 |
| Msa0398410 | Msa1446510 | 0.813603 | 2.354534e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0398410 | MtrunA17_Chr3g0085841 | 99.130 | 115 | 1 | 0 | 1 | 115 | 1 | 115 | 2.85e-81 | 233 |
| Msa0398410 | MtrunA17_Chr5g0410671 | 91.892 | 111 | 9 | 0 | 5 | 115 | 14 | 124 | 7.28e-73 | 212 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0398410 | AT1G32210.1 | 92.174 | 115 | 9 | 0 | 1 | 115 | 1 | 115 | 1.10e-75 | 219 |
| Msa0398410 | AT2G35520.3 | 88.696 | 115 | 13 | 0 | 1 | 115 | 1 | 115 | 1.27e-72 | 212 |
| Msa0398410 | AT2G35520.1 | 88.696 | 115 | 13 | 0 | 1 | 115 | 1 | 115 | 1.27e-72 | 212 |
| Msa0398410 | AT2G35520.2 | 87.931 | 116 | 13 | 1 | 1 | 115 | 1 | 116 | 7.95e-71 | 207 |
| Msa0398410 | AT1G32210.2 | 93.182 | 88 | 6 | 0 | 1 | 88 | 1 | 88 | 7.10e-55 | 167 |
Find 55 sgRNAs with CRISPR-Local
Find 230 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCATTTAACTCCTTCCTTTC+AGG | 0.114983 | 3_2:-19882613 | Msa0398410:CDS |
| TTGCGTAGGGACTGCAGTTC+TGG | 0.282207 | 3_2:-19882581 | Msa0398410:CDS |
| TTGGTGATCATGAACTTTCT+TGG | 0.304837 | 3_2:-19882047 | Msa0398410:CDS |
| CCTTGTTCTCTTTATTCACT+TGG | 0.305994 | 3_2:+19882373 | None:intergenic |
| TTCTTCACTGTGTAGGTAGA+AGG | 0.330000 | 3_2:-19884101 | Msa0398410:intron |
| CCTGAAAGGAAGGAGTTAAA+TGG | 0.336746 | 3_2:+19882613 | None:intergenic |
| ATGAACTTTCTTGGTTAAGT+TGG | 0.367737 | 3_2:-19882038 | Msa0398410:exon |
| CTGCAATGTGGTGCTCCATT+TGG | 0.370798 | 3_2:-19882066 | Msa0398410:CDS |
| GAGTACCTCCAACAACGATT+TGG | 0.387717 | 3_2:-19881713 | Msa0398410:three_prime_UTR |
| CCAGGTAGTTTACATGGCTT+TGG | 0.389862 | 3_2:-19882647 | Msa0398410:intron |
| ATTGGTGGTTTAGTTTAAAT+CGG | 0.395555 | 3_2:+19881648 | None:intergenic |
| TGAACTTTCTTGGTTAAGTT+GGG | 0.402588 | 3_2:-19882037 | Msa0398410:exon |
| AGTACCTCCAACAACGATTT+GGG | 0.428181 | 3_2:-19881712 | Msa0398410:three_prime_UTR |
| TCTCTTTATTCACTTGGATC+CGG | 0.452230 | 3_2:+19882379 | None:intergenic |
| TTGGTAGTTAACAATTGTGT+GGG | 0.458093 | 3_2:-19881623 | None:intergenic |
| AAAATCTGCAAAAGCGCGCT+CGG | 0.463481 | 3_2:+19882094 | None:intergenic |
| TAAAGAGAACAAGGAATTCA+AGG | 0.465642 | 3_2:-19882364 | Msa0398410:intron |
| AGGAACAACCTTGAGATTTG+TGG | 0.468795 | 3_2:+19883994 | None:intergenic |
| AAACAGACCCAAATCGTTGT+TGG | 0.471615 | 3_2:+19881705 | None:intergenic |
| CCAAACAAAATTCCCAGAAA+AGG | 0.474212 | 3_2:+19881909 | None:intergenic |
| GGAACAACCTTGAGATTTGT+GGG | 0.478791 | 3_2:+19883995 | None:intergenic |
| TAATGACCAGGTAGTTTACA+TGG | 0.487275 | 3_2:-19882653 | Msa0398410:intron |
| TCAGGCGTACTTTCTTGCGT+AGG | 0.489843 | 3_2:-19882595 | Msa0398410:CDS |
| CAGGCGTACTTTCTTGCGTA+GGG | 0.494144 | 3_2:-19882594 | Msa0398410:CDS |
| AAAGGAAAGGGCAAATATCC+AGG | 0.495226 | 3_2:+19881927 | None:intergenic |
| AAATCTGCAAAAGCGCGCTC+GGG | 0.496102 | 3_2:+19882095 | None:intergenic |
| GGTAGTTTACATGGCTTTGG+TGG | 0.498163 | 3_2:-19882644 | Msa0398410:CDS |
| CGCAAGAAAGTACGCCTGAA+AGG | 0.506042 | 3_2:+19882599 | None:intergenic |
| TGTCTTCACTGCCCTCATCC+AGG | 0.517420 | 3_2:-19883878 | Msa0398410:intron |
| GAAAGTTCATGATCACCAAA+TGG | 0.518501 | 3_2:+19882051 | None:intergenic |
| GGAAAGGAAGTACCTGGATG+AGG | 0.534843 | 3_2:+19883866 | None:intergenic |
| TTTGGTAGTTAACAATTGTG+TGG | 0.539331 | 3_2:-19881624 | Msa0398410:three_prime_UTR |
| AATAATAATAGTACTATACC+TGG | 0.544399 | 3_2:-19881945 | Msa0398410:three_prime_UTR |
| AAAATTCCCAGAAAAGGAAA+GGG | 0.549391 | 3_2:+19881915 | None:intergenic |
| GTAGGGACTGCAGTTCTGGC+TGG | 0.550415 | 3_2:-19882577 | Msa0398410:intron |
| TTTCATTTAGATGGAGGAGA+AGG | 0.553243 | 3_2:+19881750 | None:intergenic |
| CAAAATTCCCAGAAAAGGAA+AGG | 0.555362 | 3_2:+19881914 | None:intergenic |
| AGAAAGTACGCCTGAAAGGA+AGG | 0.558835 | 3_2:+19882603 | None:intergenic |
| CCAAGTGAATAAAGAGAACA+AGG | 0.563011 | 3_2:-19882373 | Msa0398410:CDS |
| TACAGACGTGGATCAGCCGC+TGG | 0.572740 | 3_2:+19885152 | None:intergenic |
| TTGGTTAAGTTGGGTTTGTG+TGG | 0.573236 | 3_2:-19882028 | Msa0398410:exon |
| ACTTGAATAGTCTTTAGAAG+AGG | 0.579645 | 3_2:-19885188 | Msa0398410:five_prime_UTR |
| GATGGTGAAGTCTACTGCTA+AGG | 0.589667 | 3_2:-19884065 | Msa0398410:CDS |
| GAAAGGAAGTACCTGGATGA+GGG | 0.591104 | 3_2:+19883867 | None:intergenic |
| GTAGTTTACATGGCTTTGGT+GGG | 0.595250 | 3_2:-19882643 | Msa0398410:CDS |
| GAAGGAAAAGTTGAAAACGA+TGG | 0.609152 | 3_2:-19884083 | Msa0398410:exon |
| CAGACCCAAATCGTTGTTGG+AGG | 0.618030 | 3_2:+19881708 | None:intergenic |
| TCTGAATATATCGAATCCAA+AGG | 0.618561 | 3_2:-19885122 | Msa0398410:intron |
| AACAACCTTGAGATTTGTGG+GGG | 0.618905 | 3_2:+19883997 | None:intergenic |
| GAACAACCTTGAGATTTGTG+GGG | 0.633022 | 3_2:+19883996 | None:intergenic |
| TGGTAGTTAACAATTGTGTG+GGG | 0.635934 | 3_2:-19881622 | None:intergenic |
| CGACTATCTAAATCTGAGCA+AGG | 0.636295 | 3_2:-19881824 | Msa0398410:three_prime_UTR |
| TCAGACAACTACTACAGACG+TGG | 0.684722 | 3_2:+19885140 | None:intergenic |
| AGGCTGTGCAATAAGTCCAG+CGG | 0.684788 | 3_2:-19885168 | Msa0398410:five_prime_UTR |
| AATAAGCAGACCAAAGAGTG+CGG | 0.703455 | 3_2:+19884026 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AGAAAAAAATAGAATAAAAT+TGG | + | chr3_2:19881833-19881852 | None:intergenic | 10.0% |
| !!! | GTTTTTAAAAAATTAGACTT+GGG | + | chr3_2:19884014-19884033 | None:intergenic | 15.0% |
| !!! | TGTTTTTAAAAAATTAGACT+TGG | + | chr3_2:19884015-19884034 | None:intergenic | 15.0% |
| !!! | TACAAGTGAAATTAATATTT+TGG | - | chr3_2:19884040-19884059 | Msa0398410:CDS | 15.0% |
| !!! | AAATCAATCTTTGATTTTTG+TGG | - | chr3_2:19883046-19883065 | Msa0398410:intron | 20.0% |
| !! | AATTCCTAATTCCTAATTAA+TGG | + | chr3_2:19883716-19883735 | None:intergenic | 20.0% |
| !! | TCATTAAACTAGAATCTAAA+AGG | + | chr3_2:19883988-19884007 | None:intergenic | 20.0% |
| !!! | TGAAATTAATATTTTGGTGA+TGG | - | chr3_2:19884046-19884065 | Msa0398410:CDS | 20.0% |
| !!! | GAAATTAATATTTTGGTGAT+GGG | - | chr3_2:19884047-19884066 | Msa0398410:CDS | 20.0% |
| !! | TTGTATTAATGTCATTATTC+TGG | - | chr3_2:19884545-19884564 | Msa0398410:intron | 20.0% |
| !!! | TCTATTTTTCTTCTTCTTTT+GGG | + | chr3_2:19884843-19884862 | None:intergenic | 20.0% |
| !! | AATAATAATAGTACTATACC+TGG | - | chr3_2:19884876-19884895 | Msa0398410:intron | 20.0% |
| !!! | TAACATTCTTTTCATTTAGA+TGG | + | chr3_2:19885083-19885102 | None:intergenic | 20.0% |
| !! | AATTGTTAACTACCAAAAAT+TGG | + | chr3_2:19885194-19885213 | None:intergenic | 20.0% |
| !! | GAAAATTGAAGCATTTGAAT+TGG | + | chr3_2:19881746-19881765 | None:intergenic | 25.0% |
| ! | CTACAAAAAAAACAAAATGC+AGG | + | chr3_2:19882058-19882077 | None:intergenic | 25.0% |
| ! | TCTCACATAAAAAAGACATA+AGG | + | chr3_2:19882187-19882206 | None:intergenic | 25.0% |
| ! | CTTTGTGGGAAAATATTTAT+AGG | - | chr3_2:19882367-19882386 | Msa0398410:CDS | 25.0% |
| ! | TTTCTCTCATGTTCTTATAT+TGG | - | chr3_2:19882512-19882531 | Msa0398410:intron | 25.0% |
| ! | CATAATGATCAATGATCTAA+AGG | + | chr3_2:19882913-19882932 | None:intergenic | 25.0% |
| !! | GATTGATTTACTAATGTTAC+AGG | + | chr3_2:19883035-19883054 | None:intergenic | 25.0% |
| ! | ACTAATCTGATCATGATATT+CGG | + | chr3_2:19883077-19883096 | None:intergenic | 25.0% |
| ! | TATATGCAATAACATGTGTT+TGG | + | chr3_2:19883149-19883168 | None:intergenic | 25.0% |
| ! | CTTTATGTGTGTTATGTAAT+TGG | + | chr3_2:19883253-19883272 | None:intergenic | 25.0% |
| !! | TCTAGATAACAGTTTCTTTT+GGG | + | chr3_2:19883276-19883295 | None:intergenic | 25.0% |
| !! | ATCTAGATAACAGTTTCTTT+TGG | + | chr3_2:19883277-19883296 | None:intergenic | 25.0% |
| ! | TGCAGGAAATACAAATATAT+AGG | - | chr3_2:19883551-19883570 | Msa0398410:intron | 25.0% |
| ! | GAGTAAGATTAAAAATTGGA+GGG | + | chr3_2:19883949-19883968 | None:intergenic | 25.0% |
| ! | AGAGTAAGATTAAAAATTGG+AGG | + | chr3_2:19883950-19883969 | None:intergenic | 25.0% |
| ! | GGTAGAGTAAGATTAAAAAT+TGG | + | chr3_2:19883953-19883972 | None:intergenic | 25.0% |
| ! | TCTAAAAGGATAGTATTATC+TGG | + | chr3_2:19883974-19883993 | None:intergenic | 25.0% |
| !! | TTTTCATTTTCTTAATGACC+AGG | - | chr3_2:19884156-19884175 | Msa0398410:intron | 25.0% |
| ! | ACAAACTGGTTAAAAAATAG+AGG | + | chr3_2:19884420-19884439 | None:intergenic | 25.0% |
| ! | AACATCATAATACACAAGAA+AGG | + | chr3_2:19884490-19884509 | None:intergenic | 25.0% |
| ! | AAGATACAAGAAATATTCAG+AGG | + | chr3_2:19884596-19884615 | None:intergenic | 25.0% |
| ! | ATGATTGGTATTTCATATAC+AGG | - | chr3_2:19884695-19884714 | Msa0398410:intron | 25.0% |
| !!! | GTCTATTTTTCTTCTTCTTT+TGG | + | chr3_2:19884844-19884863 | None:intergenic | 25.0% |
| ! | AAAGAAGAAGAAAAATAGAC+TGG | - | chr3_2:19884844-19884863 | Msa0398410:intron | 25.0% |
| ! | AAGAAGAAGAAAAATAGACT+GGG | - | chr3_2:19884845-19884864 | Msa0398410:intron | 25.0% |
| !! | ATTGGTGGTTTAGTTTAAAT+CGG | + | chr3_2:19885176-19885195 | None:intergenic | 25.0% |
| !! | TAAACTAAACCACCAATTTT+TGG | - | chr3_2:19885179-19885198 | Msa0398410:five_prime_UTR | 25.0% |
| ! | ACTTGAATAGTCTTTAGAAG+AGG | - | chr3_2:19881633-19881652 | Msa0398410:three_prime_UTR | 30.0% |
| TCTGAATATATCGAATCCAA+AGG | - | chr3_2:19881699-19881718 | Msa0398410:three_prime_UTR | 30.0% | |
| CATAAACCATTGAACCTATA+AGG | + | chr3_2:19881951-19881970 | None:intergenic | 30.0% | |
| AAACAAAATGCAGGTAGAAA+GGG | + | chr3_2:19882049-19882068 | None:intergenic | 30.0% | |
| AAAACAAAATGCAGGTAGAA+AGG | + | chr3_2:19882050-19882069 | None:intergenic | 30.0% | |
| TATTGAAACTAACTCTTCAG+AGG | - | chr3_2:19882156-19882175 | Msa0398410:intron | 30.0% | |
| !!! | TGTCTTTTTTATGTGAGACT+TGG | - | chr3_2:19882189-19882208 | Msa0398410:intron | 30.0% |
| TTTCGAAGAATACAAGAATC+TGG | - | chr3_2:19882217-19882236 | Msa0398410:intron | 30.0% | |
| TTCGAAGAATACAAGAATCT+GGG | - | chr3_2:19882218-19882237 | Msa0398410:intron | 30.0% | |
| CAAAGAATCTCAGTTTACAA+TGG | + | chr3_2:19882352-19882371 | None:intergenic | 30.0% | |
| TTGTAAACTGAGATTCTTTG+TGG | - | chr3_2:19882352-19882371 | Msa0398410:intron | 30.0% | |
| TGTAAACTGAGATTCTTTGT+GGG | - | chr3_2:19882353-19882372 | Msa0398410:intron | 30.0% | |
| ! | TGAATTTTTGTGACTTGAAG+TGG | - | chr3_2:19882640-19882659 | Msa0398410:CDS | 30.0% |
| GAAAGATGTTCACACAAATA+TGG | + | chr3_2:19882697-19882716 | None:intergenic | 30.0% | |
| ! | GATTTTTGTAGAAATGCAGA+GGG | + | chr3_2:19882859-19882878 | None:intergenic | 30.0% |
| ! | AGATTTTTGTAGAAATGCAG+AGG | + | chr3_2:19882860-19882879 | None:intergenic | 30.0% |
| !! | TATTTTTGCTAACCCTACTT+TGG | - | chr3_2:19882882-19882901 | Msa0398410:intron | 30.0% |
| TTAGAAATTGAAGCAAGGAA+AGG | + | chr3_2:19882974-19882993 | None:intergenic | 30.0% | |
| ! | GATCTTTAGAAATTGAAGCA+AGG | + | chr3_2:19882979-19882998 | None:intergenic | 30.0% |
| AATTCACCAAATCATCTTGA+AGG | - | chr3_2:19883377-19883396 | Msa0398410:intron | 30.0% | |
| ATCTTGAAGGAAGTAGATTA+GGG | - | chr3_2:19883390-19883409 | Msa0398410:intron | 30.0% | |
| !!! | AGTTAACTTTGTTTTGCTGA+CGG | + | chr3_2:19883492-19883511 | None:intergenic | 30.0% |
| CAAAACAAAGTTAACTTCCA+CGG | - | chr3_2:19883496-19883515 | Msa0398410:intron | 30.0% | |
| AAAACAAAGTTAACTTCCAC+GGG | - | chr3_2:19883497-19883516 | Msa0398410:intron | 30.0% | |
| !! | ATCATTGATTTGAGATCAGA+CGG | - | chr3_2:19883750-19883769 | Msa0398410:intron | 30.0% |
| GTGAAGAGTTCTATGATATT+TGG | + | chr3_2:19883845-19883864 | None:intergenic | 30.0% | |
| AAGTAAGATCACAAATGTTG+TGG | + | chr3_2:19883889-19883908 | None:intergenic | 30.0% | |
| ATGTCTGGAAGGATATTATT+TGG | + | chr3_2:19883914-19883933 | None:intergenic | 30.0% | |
| !!! | ATATTTTGGTGATGGGTTAA+AGG | - | chr3_2:19884054-19884073 | Msa0398410:CDS | 30.0% |
| AAACTTATGCATATGAACCT+AGG | + | chr3_2:19884367-19884386 | None:intergenic | 30.0% | |
| ACTGGTTAAAAAATAGAGGA+TGG | + | chr3_2:19884416-19884435 | None:intergenic | 30.0% | |
| !!! | TTTTTTAACCAGTTTGTCTC+CGG | - | chr3_2:19884423-19884442 | Msa0398410:intron | 30.0% |
| TAAAGAGAACAAGGAATTCA+AGG | - | chr3_2:19884457-19884476 | Msa0398410:intron | 30.0% | |
| CTTGACTGAACAAAATAGAA+AGG | - | chr3_2:19884619-19884638 | Msa0398410:intron | 30.0% | |
| GAAATGATGAAACAATGTGT+TGG | - | chr3_2:19884641-19884660 | Msa0398410:intron | 30.0% | |
| GATAGATTCTTACAGATGAT+TGG | - | chr3_2:19884680-19884699 | Msa0398410:intron | 30.0% | |
| ATGAACTTTCTTGGTTAAGT+TGG | - | chr3_2:19884783-19884802 | Msa0398410:intron | 30.0% | |
| TGAACTTTCTTGGTTAAGTT+GGG | - | chr3_2:19884784-19884803 | Msa0398410:intron | 30.0% | |
| AAAATTCCCAGAAAAGGAAA+GGG | + | chr3_2:19884909-19884928 | None:intergenic | 30.0% | |
| ! | CATTCTTTTCATTTAGATGG+AGG | + | chr3_2:19885080-19885099 | None:intergenic | 30.0% |
| TGTTAACTACCAAAAATTGG+TGG | + | chr3_2:19885191-19885210 | None:intergenic | 30.0% | |
| TTTGAATTGGATCTGAGTGA+AGG | + | chr3_2:19881733-19881752 | None:intergenic | 35.0% | |
| TGCATCTTCATTTGCCTTAT+AGG | - | chr3_2:19881934-19881953 | Msa0398410:three_prime_UTR | 35.0% | |
| CATTTGCCTTATAGGTTCAA+TGG | - | chr3_2:19881942-19881961 | Msa0398410:three_prime_UTR | 35.0% | |
| AACAAAATGCAGGTAGAAAG+GGG | + | chr3_2:19882048-19882067 | None:intergenic | 35.0% | |
| ! | GCGATATAAACTTGATGACA+TGG | + | chr3_2:19882094-19882113 | None:intergenic | 35.0% |
| !! | TGTTGACTGCACATATCTTT+TGG | - | chr3_2:19882451-19882470 | Msa0398410:intron | 35.0% |
| TTTCTCTTTCTTCACTGTGT+AGG | - | chr3_2:19882713-19882732 | Msa0398410:intron | 35.0% | |
| GAAGGAAAAGTTGAAAACGA+TGG | - | chr3_2:19882738-19882757 | Msa0398410:intron | 35.0% | |
| CTAAAGGAAAAGCCAAAGTA+GGG | + | chr3_2:19882897-19882916 | None:intergenic | 35.0% | |
| TCTAAAGGAAAAGCCAAAGT+AGG | + | chr3_2:19882898-19882917 | None:intergenic | 35.0% | |
| AATCTGATCATGATATTCGG+AGG | + | chr3_2:19883074-19883093 | None:intergenic | 35.0% | |
| ! | TGATCAGATTAGTCCAAATC+AGG | - | chr3_2:19883084-19883103 | Msa0398410:intron | 35.0% |
| ! | GATCAGATTAGTCCAAATCA+GGG | - | chr3_2:19883085-19883104 | Msa0398410:intron | 35.0% |
| CAGATTTGTGAAGTAACTTC+TGG | + | chr3_2:19883199-19883218 | None:intergenic | 35.0% | |
| TTACTTCACAAATCTGCAGA+AGG | - | chr3_2:19883203-19883222 | Msa0398410:intron | 35.0% | |
| !! | GATGATTTGGTGAATTGTGA+TGG | + | chr3_2:19883373-19883392 | None:intergenic | 35.0% |
| CTACTTCCTTCAAGATGATT+TGG | + | chr3_2:19883386-19883405 | None:intergenic | 35.0% | |
| CATCTTGAAGGAAGTAGATT+AGG | - | chr3_2:19883389-19883408 | Msa0398410:intron | 35.0% | |
| GTGAATCGAATAGGTTACAT+AGG | + | chr3_2:19883460-19883479 | None:intergenic | 35.0% | |
| ACAAATATATAGGCTGCACA+TGG | - | chr3_2:19883561-19883580 | Msa0398410:intron | 35.0% | |
| CCTAATTCCTAATTAATGGC+TGG | + | chr3_2:19883712-19883731 | None:intergenic | 35.0% | |
| CCAGCCATTAATTAGGAATT+AGG | - | chr3_2:19883709-19883728 | Msa0398410:intron | 35.0% | |
| TGTGACACGGTAAATAATCT+GGG | + | chr3_2:19883776-19883795 | None:intergenic | 35.0% | |
| TTGGCATTAAATGTGTGACA+CGG | + | chr3_2:19883789-19883808 | None:intergenic | 35.0% | |
| ! | GTTTCTTGGATTAGGATTCT+TGG | + | chr3_2:19883808-19883827 | None:intergenic | 35.0% |
| TATCCTTCCAGACATTATTG+AGG | - | chr3_2:19883919-19883938 | Msa0398410:intron | 35.0% | |
| ATTCCTCAATAATGTCTGGA+AGG | + | chr3_2:19883925-19883944 | None:intergenic | 35.0% | |
| TAACTTCAACATCAACCTAC+TGG | + | chr3_2:19884084-19884103 | None:intergenic | 35.0% | |
| TAATGACCAGGTAGTTTACA+TGG | - | chr3_2:19884168-19884187 | Msa0398410:intron | 35.0% | |
| !! | ACAATAGTTCTAATCTGCCT+AGG | - | chr3_2:19884347-19884366 | Msa0398410:intron | 35.0% |
| TCTCTTTATTCACTTGGATC+CGG | + | chr3_2:19884445-19884464 | None:intergenic | 35.0% | |
| CCTTGTTCTCTTTATTCACT+TGG | + | chr3_2:19884451-19884470 | None:intergenic | 35.0% | |
| CCAAGTGAATAAAGAGAACA+AGG | - | chr3_2:19884448-19884467 | Msa0398410:intron | 35.0% | |
| ! | AGATTTTGTTCTCTGCAATG+TGG | - | chr3_2:19884743-19884762 | Msa0398410:intron | 35.0% |
| GAAAGTTCATGATCACCAAA+TGG | + | chr3_2:19884773-19884792 | None:intergenic | 35.0% | |
| ! | TTGGTGATCATGAACTTTCT+TGG | - | chr3_2:19884774-19884793 | Msa0398410:intron | 35.0% |
| GAAGAAAAATAGACTGGGAT+AGG | - | chr3_2:19884850-19884869 | Msa0398410:intron | 35.0% | |
| ! | ATATTTGCCCTTTCCTTTTC+TGG | - | chr3_2:19884899-19884918 | Msa0398410:intron | 35.0% |
| ! | TATTTGCCCTTTCCTTTTCT+GGG | - | chr3_2:19884900-19884919 | Msa0398410:intron | 35.0% |
| CAAAATTCCCAGAAAAGGAA+AGG | + | chr3_2:19884910-19884929 | None:intergenic | 35.0% | |
| CCAAACAAAATTCCCAGAAA+AGG | + | chr3_2:19884915-19884934 | None:intergenic | 35.0% | |
| !! | CCTTTTCTGGGAATTTTGTT+TGG | - | chr3_2:19884912-19884931 | Msa0398410:intron | 35.0% |
| TTTCATTTAGATGGAGGAGA+AGG | + | chr3_2:19885074-19885093 | None:intergenic | 35.0% | |
| AGAGAAACACACGTTGAGTT+AGG | + | chr3_2:19881902-19881921 | None:intergenic | 40.0% | |
| ACAAAATGCAGGTAGAAAGG+GGG | + | chr3_2:19882047-19882066 | None:intergenic | 40.0% | |
| ATAGTCCACAATCGCAATCT+CGG | + | chr3_2:19882310-19882329 | None:intergenic | 40.0% | |
| TTCTTCACTGTGTAGGTAGA+AGG | - | chr3_2:19882720-19882739 | Msa0398410:intron | 40.0% | |
| ! | AAGATCTTTTCCGCACTCTT+TGG | - | chr3_2:19882785-19882804 | Msa0398410:intron | 40.0% |
| AATAAGCAGACCAAAGAGTG+CGG | + | chr3_2:19882798-19882817 | None:intergenic | 40.0% | |
| AACAACCTTGAGATTTGTGG+GGG | + | chr3_2:19882827-19882846 | None:intergenic | 40.0% | |
| GAACAACCTTGAGATTTGTG+GGG | + | chr3_2:19882828-19882847 | None:intergenic | 40.0% | |
| GGAACAACCTTGAGATTTGT+GGG | + | chr3_2:19882829-19882848 | None:intergenic | 40.0% | |
| AGGAACAACCTTGAGATTTG+TGG | + | chr3_2:19882830-19882849 | None:intergenic | 40.0% | |
| TGACATTGTGCTGAATTTCC+CGG | - | chr3_2:19883172-19883191 | Msa0398410:intron | 40.0% | |
| TTGTGAAGTAACTTCTGGAC+CGG | + | chr3_2:19883194-19883213 | None:intergenic | 40.0% | |
| TGCGTGCAATTTCTAATGCA+AGG | + | chr3_2:19883301-19883320 | None:intergenic | 40.0% | |
| TTCGACCAATGATTCGAGAT+TGG | - | chr3_2:19883340-19883359 | Msa0398410:intron | 40.0% | |
| GCAAGTTCTCATACATTTCC+TGG | + | chr3_2:19883429-19883448 | None:intergenic | 40.0% | |
| ATCGAATAGGTTACATAGGC+AGG | + | chr3_2:19883456-19883475 | None:intergenic | 40.0% | |
| TTGTATTTCCTGCAATGTCC+AGG | + | chr3_2:19883545-19883564 | None:intergenic | 40.0% | |
| TATCCGCAATCGCATATTCT+GGG | + | chr3_2:19883587-19883606 | None:intergenic | 40.0% | |
| ATATCCGCAATCGCATATTC+TGG | + | chr3_2:19883588-19883607 | None:intergenic | 40.0% | |
| GGATATACCTGAATACGCTA+GGG | - | chr3_2:19883602-19883621 | Msa0398410:intron | 40.0% | |
| GATATACCTGAATACGCTAG+GGG | - | chr3_2:19883603-19883622 | Msa0398410:intron | 40.0% | |
| ATATACCTGAATACGCTAGG+GGG | - | chr3_2:19883604-19883623 | Msa0398410:intron | 40.0% | |
| TAAAATATCCCAGCTGGCAA+GGG | + | chr3_2:19883639-19883658 | None:intergenic | 40.0% | |
| ATAAAATATCCCAGCTGGCA+AGG | + | chr3_2:19883640-19883659 | None:intergenic | 40.0% | |
| CTCACATAAAATATCCCAGC+TGG | + | chr3_2:19883645-19883664 | None:intergenic | 40.0% | |
| CCTCTTTCTTCCTTTGCTTT+GGG | - | chr3_2:19883669-19883688 | Msa0398410:intron | 40.0% | |
| TTACCTGCCAGCCATTAATT+AGG | - | chr3_2:19883702-19883721 | Msa0398410:intron | 40.0% | |
| ATTCCTAATTAATGGCTGGC+AGG | + | chr3_2:19883708-19883727 | None:intergenic | 40.0% | |
| GTGTGACACGGTAAATAATC+TGG | + | chr3_2:19883777-19883796 | None:intergenic | 40.0% | |
| ATGATATTTGGACTCCAGTG+AGG | + | chr3_2:19883833-19883852 | None:intergenic | 40.0% | |
| GGGAATTCCTCAATAATGTC+TGG | + | chr3_2:19883929-19883948 | None:intergenic | 40.0% | |
| !! | GTAGTTTACATGGCTTTGGT+GGG | - | chr3_2:19884178-19884197 | Msa0398410:intron | 40.0% |
| CCTGAAAGGAAGGAGTTAAA+TGG | + | chr3_2:19884211-19884230 | None:intergenic | 40.0% | |
| CCATTTAACTCCTTCCTTTC+AGG | - | chr3_2:19884208-19884227 | Msa0398410:intron | 40.0% | |
| GTGTGCATAAATTGCATAGC+TGG | + | chr3_2:19884305-19884324 | None:intergenic | 40.0% | |
| !! | TTGGTTAAGTTGGGTTTGTG+TGG | - | chr3_2:19884793-19884812 | Msa0398410:intron | 40.0% |
| AAAGGAAAGGGCAAATATCC+AGG | + | chr3_2:19884897-19884916 | None:intergenic | 40.0% | |
| CGACTATCTAAATCTGAGCA+AGG | - | chr3_2:19884997-19885016 | Msa0398410:intron | 40.0% | |
| AGTACCTCCAACAACGATTT+GGG | - | chr3_2:19885109-19885128 | Msa0398410:intron | 40.0% | |
| AAACAGACCCAAATCGTTGT+TGG | + | chr3_2:19885119-19885138 | None:intergenic | 40.0% | |
| TCAGACAACTACTACAGACG+TGG | + | chr3_2:19881684-19881703 | None:intergenic | 45.0% | |
| GATGGTGAAGTCTACTGCTA+AGG | - | chr3_2:19882756-19882775 | Msa0398410:intron | 45.0% | |
| AGAAATGCAGAGGGAAAGAG+AGG | + | chr3_2:19882850-19882869 | None:intergenic | 45.0% | |
| !! | GAAAGGAAGTACCTGGATGA+GGG | + | chr3_2:19882957-19882976 | None:intergenic | 45.0% |
| !! | AAGCAAGGAAAGGAAGTACC+TGG | + | chr3_2:19882964-19882983 | None:intergenic | 45.0% |
| ! | CAGATTAGTCCAAATCAGGG+TGG | - | chr3_2:19883088-19883107 | Msa0398410:intron | 45.0% |
| GAGTTTCTTCCACCCTGATT+TGG | + | chr3_2:19883100-19883119 | None:intergenic | 45.0% | |
| GGGTGGAAGAAACTCTTATC+TGG | - | chr3_2:19883105-19883124 | Msa0398410:intron | 45.0% | |
| TGTGAAGTAACTTCTGGACC+GGG | + | chr3_2:19883193-19883212 | None:intergenic | 45.0% | |
| !! | TGCAGAAGGCACTAGAAACA+TGG | - | chr3_2:19883217-19883236 | Msa0398410:intron | 45.0% |
| AGGCACTAGAAACATGGACA+CGG | - | chr3_2:19883223-19883242 | Msa0398410:intron | 45.0% | |
| GCTCACCAATCTCGAATCAT+TGG | + | chr3_2:19883348-19883367 | None:intergenic | 45.0% | |
| TGAAGGAAGTAGATTAGGGC+AGG | - | chr3_2:19883394-19883413 | Msa0398410:intron | 45.0% | |
| ATAGGTTACATAGGCAGGAC+AGG | + | chr3_2:19883451-19883470 | None:intergenic | 45.0% | |
| ACCTATTCGATTCACTCTCC+TGG | - | chr3_2:19883465-19883484 | Msa0398410:intron | 45.0% | |
| ACCAGGAGAGTGAATCGAAT+AGG | + | chr3_2:19883469-19883488 | None:intergenic | 45.0% | |
| GATCTGCCATCGAAAGGAAA+TGG | - | chr3_2:19883519-19883538 | Msa0398410:intron | 45.0% | |
| CGGATATACCTGAATACGCT+AGG | - | chr3_2:19883601-19883620 | Msa0398410:intron | 45.0% | |
| GCCTCTTTCTTCCTTTGCTT+TGG | - | chr3_2:19883668-19883687 | Msa0398410:intron | 45.0% | |
| CCCAAAGCAAAGGAAGAAAG+AGG | + | chr3_2:19883672-19883691 | None:intergenic | 45.0% | |
| ATTAATGGCTGGCAGGTAAC+AGG | + | chr3_2:19883701-19883720 | None:intergenic | 45.0% | |
| GTGAGGCAGTTTCTTGGATT+AGG | + | chr3_2:19883816-19883835 | None:intergenic | 45.0% | |
| AATCCAAGAAACTGCCTCAC+TGG | - | chr3_2:19883816-19883835 | Msa0398410:intron | 45.0% | |
| CACAAATGTTGTGGTGATCG+AGG | + | chr3_2:19883880-19883899 | None:intergenic | 45.0% | |
| ! | TGGGTTAAAGGTTAGCCAGT+AGG | - | chr3_2:19884066-19884085 | Msa0398410:CDS | 45.0% |
| CCAAAGCCATGTAAACTACC+TGG | + | chr3_2:19884177-19884196 | None:intergenic | 45.0% | |
| CCAGGTAGTTTACATGGCTT+TGG | - | chr3_2:19884174-19884193 | Msa0398410:intron | 45.0% | |
| !! | GGTAGTTTACATGGCTTTGG+TGG | - | chr3_2:19884177-19884196 | Msa0398410:intron | 45.0% |
| ! | AGAAAGTACGCCTGAAAGGA+AGG | + | chr3_2:19884221-19884240 | None:intergenic | 45.0% |
| ! | AAAATCTGCAAAAGCGCGCT+CGG | + | chr3_2:19884730-19884749 | None:intergenic | 45.0% |
| GAGTACCTCCAACAACGATT+TGG | - | chr3_2:19885108-19885127 | Msa0398410:intron | 45.0% | |
| AGGCTGTGCAATAAGTCCAG+CGG | - | chr3_2:19881653-19881672 | Msa0398410:three_prime_UTR | 50.0% | |
| AGTGAAGGCGAGGTTACCTT+TGG | + | chr3_2:19881718-19881737 | None:intergenic | 50.0% | |
| ATTGGATCTGAGTGAAGGCG+AGG | + | chr3_2:19881728-19881747 | None:intergenic | 50.0% | |
| TGGGTCAGATGCAGCTGATA+CGG | - | chr3_2:19882237-19882256 | Msa0398410:intron | 50.0% | |
| CTCATATTGTGAGCGTGTCG+TGG | - | chr3_2:19882260-19882279 | Msa0398410:intron | 50.0% | |
| TGCAACCCCCACAAATCTCA+AGG | - | chr3_2:19882819-19882838 | Msa0398410:intron | 50.0% | |
| !! | GGAAAGGAAGTACCTGGATG+AGG | + | chr3_2:19882958-19882977 | None:intergenic | 50.0% |
| !!! | CTTTGTTTTGCTGACGGACC+AGG | + | chr3_2:19883486-19883505 | None:intergenic | 50.0% |
| TCCAGGCCATTTCCTTTCGA+TGG | + | chr3_2:19883528-19883547 | None:intergenic | 50.0% | |
| TGGCCCAGAATATGCGATTG+CGG | - | chr3_2:19883581-19883600 | Msa0398410:intron | 50.0% | |
| TGATCTTTCCCTTGCCAGCT+GGG | - | chr3_2:19883628-19883647 | Msa0398410:intron | 50.0% | |
| !! | TCTTCCTTTGCTTTGGGACG+AGG | - | chr3_2:19883675-19883694 | Msa0398410:intron | 50.0% |
| ACTCCAGTGAGGCAGTTTCT+TGG | + | chr3_2:19883822-19883841 | None:intergenic | 50.0% | |
| ! | CGCAAGAAAGTACGCCTGAA+AGG | + | chr3_2:19884225-19884244 | None:intergenic | 50.0% |
| TCAGGCGTACTTTCTTGCGT+AGG | - | chr3_2:19884226-19884245 | Msa0398410:intron | 50.0% | |
| CAGGCGTACTTTCTTGCGTA+GGG | - | chr3_2:19884227-19884246 | Msa0398410:intron | 50.0% | |
| ACTTGGATCCGGAGACAAAC+TGG | + | chr3_2:19884434-19884453 | None:intergenic | 50.0% | |
| ! | AAATCTGCAAAAGCGCGCTC+GGG | + | chr3_2:19884729-19884748 | None:intergenic | 50.0% |
| CTGCAATGTGGTGCTCCATT+TGG | - | chr3_2:19884755-19884774 | Msa0398410:intron | 50.0% | |
| CAGACCCAAATCGTTGTTGG+AGG | + | chr3_2:19885116-19885135 | None:intergenic | 50.0% | |
| CACAATCGCAATCTCGGTCG+TGG | + | chr3_2:19882304-19882323 | None:intergenic | 55.0% | |
| CACGACCGAGATTGCGATTG+TGG | - | chr3_2:19882302-19882321 | Msa0398410:intron | 55.0% | |
| TGTCTTCACTGCCCTCATCC+AGG | - | chr3_2:19882943-19882962 | Msa0398410:intron | 55.0% | |
| GCCATCGAAAGGAAATGGCC+TGG | - | chr3_2:19883524-19883543 | Msa0398410:intron | 55.0% | |
| GGAAATGGCCTGGACATTGC+AGG | - | chr3_2:19883534-19883553 | Msa0398410:intron | 55.0% | |
| ATCAGCCCCCTAGCGTATTC+AGG | + | chr3_2:19883612-19883631 | None:intergenic | 55.0% | |
| CTGATCTTTCCCTTGCCAGC+TGG | - | chr3_2:19883627-19883646 | Msa0398410:intron | 55.0% | |
| TTGCGTAGGGACTGCAGTTC+TGG | - | chr3_2:19884240-19884259 | Msa0398410:intron | 55.0% | |
| TACAGACGTGGATCAGCCGC+TGG | + | chr3_2:19881672-19881691 | None:intergenic | 60.0% | |
| CCTTTCGATGGCAGATCCCG+TGG | + | chr3_2:19883516-19883535 | None:intergenic | 60.0% | |
| CCACGGGATCTGCCATCGAA+AGG | - | chr3_2:19883513-19883532 | Msa0398410:intron | 60.0% | |
| CAGGCCTCGTCCCAAAGCAA+AGG | + | chr3_2:19883682-19883701 | None:intergenic | 60.0% | |
| ! | GTAGGGACTGCAGTTCTGGC+TGG | - | chr3_2:19884244-19884263 | Msa0398410:intron | 60.0% |
| TAGGGCAGGCTAACAGCGCC+AGG | - | chr3_2:19883408-19883427 | Msa0398410:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_2 | gene | 19881624 | 19885219 | 19881624 | ID=Msa0398410;Name=Msa0398410 |
| chr3_2 | mRNA | 19881624 | 19885219 | 19881624 | ID=Msa0398410-mRNA-1;Parent=Msa0398410;Name=Msa0398410-mRNA-1;_AED=0.24;_eAED=0.24;_QI=119|1|1|1|0.8|0.66|6|419|115 |
| chr3_2 | exon | 19881624 | 19882126 | 19881624 | ID=Msa0398410-mRNA-1:exon:4313;Parent=Msa0398410-mRNA-1 |
| chr3_2 | exon | 19882365 | 19882408 | 19882365 | ID=Msa0398410-mRNA-1:exon:4312;Parent=Msa0398410-mRNA-1 |
| chr3_2 | exon | 19882578 | 19882665 | 19882578 | ID=Msa0398410-mRNA-1:exon:4311;Parent=Msa0398410-mRNA-1 |
| chr3_2 | exon | 19883879 | 19883926 | 19883879 | ID=Msa0398410-mRNA-1:exon:4310;Parent=Msa0398410-mRNA-1 |
| chr3_2 | exon | 19884003 | 19884108 | 19884003 | ID=Msa0398410-mRNA-1:exon:4309;Parent=Msa0398410-mRNA-1 |
| chr3_2 | exon | 19885123 | 19885219 | 19885123 | ID=Msa0398410-mRNA-1:exon:4308;Parent=Msa0398410-mRNA-1 |
| chr3_2 | five_prime_UTR | 19885123 | 19885219 | 19885123 | ID=Msa0398410-mRNA-1:five_prime_utr;Parent=Msa0398410-mRNA-1 |
| chr3_2 | five_prime_UTR | 19884087 | 19884108 | 19884087 | ID=Msa0398410-mRNA-1:five_prime_utr;Parent=Msa0398410-mRNA-1 |
| chr3_2 | CDS | 19884003 | 19884086 | 19884003 | ID=Msa0398410-mRNA-1:cds;Parent=Msa0398410-mRNA-1 |
| chr3_2 | CDS | 19883879 | 19883926 | 19883879 | ID=Msa0398410-mRNA-1:cds;Parent=Msa0398410-mRNA-1 |
| chr3_2 | CDS | 19882578 | 19882665 | 19882578 | ID=Msa0398410-mRNA-1:cds;Parent=Msa0398410-mRNA-1 |
| chr3_2 | CDS | 19882365 | 19882408 | 19882365 | ID=Msa0398410-mRNA-1:cds;Parent=Msa0398410-mRNA-1 |
| chr3_2 | CDS | 19882043 | 19882126 | 19882043 | ID=Msa0398410-mRNA-1:cds;Parent=Msa0398410-mRNA-1 |
| chr3_2 | three_prime_UTR | 19881624 | 19882042 | 19881624 | ID=Msa0398410-mRNA-1:three_prime_utr;Parent=Msa0398410-mRNA-1 |
| Gene Sequence |
| Protein sequence |
